# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1qjcA 158 4.91e-16 c.26.1.3 63328 1od6A 160 6.35e-16 c.26.1.3 86836 1yumA 242 1.05e-15 1k4mA 213 1.56e-15 c.26.1.3 77258 1tfuA 157 3.59e-15 c.26.1.3 106859 2h29A 189 4.70e-15 1kamA 194 9.33e-15 c.26.1.3 72254 1f9aA 168 1.37e-14 c.26.1.3 31602 1nuuA 252 6.20e-13 c.26.1.3 86209 1ej2A 181 6.91e-13 c.26.1.3 59414 1cozA 129 9.77e-13 c.26.1.2 31598 1mrzA 293 2.11e-12 b.43.5.1,c.26.1.3 91452,91453 1lw7A 365 2.97e-12 c.26.1.3,c.37.1.1 74295,74296 1m8jA 181 3.06e-12 c.26.1.3 84875 1kqnA 279 5.93e-12 c.26.1.3 77492 2qjoA 341 9.99e-11 2qjtA 352 1.37e-05 1g8fA 511 0.01387 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2a84A 300 0.01529 c.26.1.4 126389 1n2eA 300 0.02109 c.26.1.4 85268 1v8fA 276 0.03737 c.26.1.4 100503 1v47A 349 0.04718 b.122.1.3,c.26.1.5 100292,100293 1ihoA 283 0.06810 c.26.1.4 62390 2cyaA 364 0.09242 1n3lA 372 0.3509 c.26.1.1 79966 2yxnA 322 0.5889 1j1uA 306 0.7206 c.26.1.1 83980 4ts1A 319 0.8001 c.26.1.1 31565 1r6xA 395 0.8689 b.122.1.3,c.26.1.5 97167,97168 1jhdA 396 0.9871 b.122.1.3,c.26.1.5 66712,66713 2cybA 323 1.025 2ip1A 432 1.936 1r6uA 437 4.926 c.26.1.1 97163 1wjgA 137 5.869 c.26.2.4 114696 1xt8A 292 6.287 c.94.1.1 122293 1owlA 484 7.234 a.99.1.1,c.28.1.1 93647,93648 1jmvA 141 7.748 c.26.2.4 66897 2z08A 137 8.719 1y42X 392 9.679 2vc6A 292 10.17 2purA 292 11.62 1xkyA 301 11.75 c.1.10.1 122094 2ehhA 294 12.29 1h3fA 432 13.01 c.26.1.1,d.66.1.4 76631,76632 2ojpA 292 13.04 2rfgA 297 13.44 2pidA 356 14.12 2yzrA 330 14.32 1lst 239 14.58 2j5bA 348 16.01 1oywA 523 16.29 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1fkx 349 16.48 1qnf 484 17.03 1s0uA 408 17.32 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1wq3A 322 17.55 1yi8A 351 18.15 2atsA 292 18.55 c.1.10.1 127306 1tezA 474 19.40 a.99.1.1,c.28.1.1 112409,112410 1o5kA 306 19.67 c.1.10.1 92504 2ag6A 314 19.95 1w3iA 293 21.43 c.1.10.1 109152 1a4mA 349 22.05 c.1.9.1 29014 3d0cA 314 22.36 1hzpA 335 23.03 c.95.1.2,c.95.1.2 61455,61456 2a6lA 292 25.28 c.1.10.1 126285 1rd5A 262 25.90 c.1.2.4 111772 1qmgA 524 26.05 a.100.1.2,c.2.1.6 18785,30182 2v25A 259 26.16 2a6nA 292 26.92 c.1.10.1 126289 2v9dA 343 27.28 2v3vA 723 29.07 1jilA 420 29.22 c.26.1.1 66745 1rzmA 338 30.70 c.1.10.4 105137 1dhpA 292 31.14 c.1.10.1 29097 2j07A 420 31.47 a.99.1.1,c.28.1.1 137891,137892 1tq8A 163 32.23 c.26.2.4 107204 2r91A 286 34.21 1tqjA 230 34.99 c.1.2.2 107228 2ts1 419 36.25 2gwgA 350 40.06 c.1.9.15 135805 2r8wA 332 40.65 1jx6A 342 41.38 c.93.1.1 67406 2napA 723 41.70 b.52.2.2,c.81.1.1 26926,35334 1v6tA 255 42.13 c.6.2.5 113550 2nuwA 288 42.20 1mixA 206 42.58 a.11.2.1,b.55.1.5 79166,79167 2c3zA 222 44.41 1d2rA 326 45.32 c.26.1.1 31572 2pcqA 283 47.60 1wdnA 226 47.81 c.94.1.1 35816 1t5iA 172 48.01 c.37.1.19 106450 1xbtA 193 48.06 c.37.1.24,g.39.1.14 115080,115081 3bl6A 230 49.47 1mzjA 339 54.63 c.95.1.2,c.95.1.2 79700,79701 1ru8A 232 54.83 c.26.2.1 97849 2gouA 365 55.08 2dumA 170 55.14 2hmcA 344 58.24 1m1nB 522 60.06 c.92.2.3 78418 1u3dA 509 60.37 a.99.1.1,c.28.1.1 107638,107639 1i6lA 328 61.34 c.26.1.1 66041 2bg5A 324 61.45 1ir6A 424 65.62 c.107.1.2 71342 1i4nA 251 68.26 c.1.2.4 71114 1efvA 315 68.33 c.26.2.3,c.31.1.2 31633,31728 1s3iA 310 68.56 b.46.1.1,c.65.1.1 98435,98436 2couA 109 71.44 1vr6A 350 72.77 c.1.10.4 120439 2cycA 375 72.86 1xdwA 331 73.72 1j9lA 247 75.50 c.106.1.1 62762 1n7kA 234 75.62 c.1.10.1 85374 1mumA 295 76.71 c.1.12.7 85108 2tpsA 227 78.80 c.1.3.1 28591 1tfrA 305 79.17 a.60.7.1,c.120.1.2 18081,33351 1w1iE 357 80.56 c.1.9.1 109051 1ym3A 215 83.08 3coqA 89 84.24 1ho1A 242 84.92 c.1.24.1 61097 1gggA 226 85.29 c.94.1.1 35817 1hlvA 131 87.34 a.4.1.7,a.4.1.7 65854,65855 1uanA 227 89.00 c.134.1.1 99135