# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1qjcA 158 3.89e-14 c.26.1.3 63328 1od6A 160 7.65e-14 c.26.1.3 86836 1tfuA 157 3.73e-13 c.26.1.3 106859 1yumA 242 8.39e-13 1k4mA 213 3.13e-12 c.26.1.3 77258 1f9aA 168 4.06e-12 c.26.1.3 31602 2h29A 189 8.10e-12 1kamA 194 9.27e-12 c.26.1.3 72254 1cozA 129 6.02e-11 c.26.1.2 31598 1ej2A 181 2.41e-10 c.26.1.3 59414 1mrzA 293 3.05e-10 b.43.5.1,c.26.1.3 91452,91453 1m8jA 181 6.58e-10 c.26.1.3 84875 1lw7A 365 2.76e-09 c.26.1.3,c.37.1.1 74295,74296 2qjoA 341 8.88e-09 1nuuA 252 1.08e-08 c.26.1.3 86209 1kqnA 279 2.43e-08 c.26.1.3 77492 2qjtA 352 0.000333 1v8fA 276 0.02709 c.26.1.4 100503 1n2eA 300 0.02738 c.26.1.4 85268 2a84A 300 0.05762 c.26.1.4 126389 1ihoA 283 0.06441 c.26.1.4 62390 1g8fA 511 0.1347 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1v47A 349 0.2179 b.122.1.3,c.26.1.5 100292,100293 1owlA 484 1.030 a.99.1.1,c.28.1.1 93647,93648 1wjgA 137 1.558 c.26.2.4 114696 2z08A 137 2.333 1r6xA 395 2.373 b.122.1.3,c.26.1.5 97167,97168 2yxnA 322 2.484 1jhdA 396 2.618 b.122.1.3,c.26.1.5 66712,66713 2cyaA 364 2.792 1j1uA 306 3.142 c.26.1.1 83980 1n3lA 372 3.173 c.26.1.1 79966 1qnf 484 3.304 4ts1A 319 3.522 c.26.1.1 31565 1tezA 474 4.007 a.99.1.1,c.28.1.1 112409,112410 1jmvA 141 5.016 c.26.2.4 66897 1j9lA 247 7.464 c.106.1.1 62762 1qmgA 524 7.718 a.100.1.2,c.2.1.6 18785,30182 1u3dA 509 8.309 a.99.1.1,c.28.1.1 107638,107639 2j07A 420 8.596 a.99.1.1,c.28.1.1 137891,137892 2ip1A 432 9.840 1r6uA 437 11.71 c.26.1.1 97163 1wq3A 322 13.40 1a4mA 349 14.32 c.1.9.1 29014 2gouA 365 15.00 1ru8A 232 16.26 c.26.2.1 97849 1np7A 489 16.31 a.99.1.1,c.28.1.1 80677,80678 1fkx 349 16.50 2r14A 377 17.98 2ac2A 309 19.44 2pidA 356 20.14 1y42X 392 20.78 1vypX 364 20.99 c.1.4.1 108905 1ujqA 305 23.23 c.1.12.7 99463 2dumA 170 23.81 1zgdA 312 24.58 2j5bA 348 25.73 2e6cA 244 26.37 1tqjA 230 28.81 c.1.2.2 107228 1deoA 233 30.40 c.23.10.4 31345 1icpA 376 31.84 c.1.4.1 62270 1rd5A 262 33.37 c.1.2.4 111772 2ag6A 314 33.94 1vr6A 350 34.82 c.1.10.4 120439 1mjhA 162 36.37 c.26.2.4 31639 1rzmA 338 37.33 c.1.10.4 105137 2acvA 463 37.37 1mumA 295 37.44 c.1.12.7 85108 2h1vA 310 37.48 1xg4A 295 37.89 1i39A 225 38.95 c.55.3.1 61585 1s0uA 408 41.03 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2bb3A 221 42.66 c.90.1.1 128257 2yzrA 330 43.03 2px7A 236 44.29 1w1iE 357 44.86 c.1.9.1 109051 1qycA 308 45.27 c.2.1.2 96581 1vyrA 364 45.27 c.1.4.1 108906 1efvA 315 45.56 c.26.2.3,c.31.1.2 31633,31728 1hzpA 335 46.61 c.95.1.2,c.95.1.2 61455,61456 1uanA 227 46.82 c.134.1.1 99135 1zowA 313 48.04 2hjpA 290 48.48 1m5wA 243 49.62 c.1.24.1 84836 1mzjA 339 50.94 c.95.1.2,c.95.1.2 79700,79701 2j4dA 525 50.95 1p1xA 260 51.52 c.1.10.1 104060 1yxyA 234 52.26 c.1.2.5 124203 2a0nA 265 52.76 c.1.2.1 125961 2abbA 364 52.85 c.1.4.1 126517 1ho1A 242 53.01 c.1.24.1 61097 2ac4A 309 54.02 1w3iA 293 56.16 c.1.10.1 109152 1hnjA 317 56.93 c.95.1.2,c.95.1.2 35969,35970 2cybA 323 57.19 1w96A 554 60.74 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1ep3A 311 61.56 c.1.4.1 28597 1ekeA 230 61.64 c.55.3.1 33572 2nzlA 392 62.88 1v6tA 255 63.16 c.6.2.5 113550 2r91A 286 63.63 2pfsA 150 64.00 1tq8A 163 64.26 c.26.2.4 107204 1dorA 311 64.45 c.1.4.1 28595 1rrmA 386 65.58 e.22.1.2 105081 1o60A 292 66.29 c.1.10.4 92532 1hrkA 359 67.64 c.92.1.1 61228 2nvoA 535 69.70 1lst 239 72.36 1s3iA 310 73.03 b.46.1.1,c.65.1.1 98435,98436 1u9cA 224 73.56 c.23.16.2 113234 1mzhA 225 75.54 c.1.10.1 79698 1wv2A 265 75.99 c.1.31.1 114910 1w85A 368 76.65 c.36.1.11 114335 1gqnA 252 76.74 c.1.10.1 90514 1umdA 367 77.00 c.36.1.11 99599 2c0dA 221 78.52 1prxA 224 79.21 c.47.1.10 33076 1vh7A 265 79.75 c.1.2.1 100646 2napA 723 79.86 b.52.2.2,c.81.1.1 26926,35334 1g67A 225 80.47 c.1.3.1 60311 2o14A 375 81.15 1qfeA 252 83.91 c.1.10.1 29167 2yv5A 302 85.10 2db3A 434 89.58