# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1qjcA 158 2.71e-05 c.26.1.3 63328 1od6A 160 6.06e-05 c.26.1.3 86836 1tfuA 157 0.000108 c.26.1.3 106859 2h29A 189 0.000395 1k4mA 213 0.000691 c.26.1.3 77258 1yumA 242 0.000765 1f9aA 168 0.000795 c.26.1.3 31602 1m8jA 181 0.001070 c.26.1.3 84875 1cozA 129 0.002024 c.26.1.2 31598 1ej2A 181 0.002478 c.26.1.3 59414 1kamA 194 0.002552 c.26.1.3 72254 1mrzA 293 0.009523 b.43.5.1,c.26.1.3 91452,91453 1kqnA 279 0.03178 c.26.1.3 77492 1lw7A 365 0.1066 c.26.1.3,c.37.1.1 74295,74296 1nuuA 252 0.1513 c.26.1.3 86209 1v8fA 276 0.2010 c.26.1.4 100503 2qjtA 352 0.3396 1n2eA 300 0.4808 c.26.1.4 85268 2qjoA 341 0.4871 4ts1A 319 0.5611 c.26.1.1 31565 2yxnA 322 0.6166 1jilA 420 0.8372 c.26.1.1 66745 1v47A 349 0.8641 b.122.1.3,c.26.1.5 100292,100293 1ihoA 283 0.9492 c.26.1.4 62390 2ts1 419 1.004 1wq3A 322 1.487 2cybA 323 2.095 1j1uA 306 2.233 c.26.1.1 83980 2a84A 300 3.166 c.26.1.4 126389 2pidA 356 3.999 2cyaA 364 4.235 1y8qB 640 4.385 1h3fA 432 5.266 c.26.1.1,d.66.1.4 76631,76632 1r6xA 395 5.387 b.122.1.3,c.26.1.5 97167,97168 1y42X 392 6.225 1n3lA 372 7.356 c.26.1.1 79966 2ag6A 314 7.877 2culA 232 8.114 c.3.1.7 130813 1zud1 251 9.238 2j5bA 348 10.77 1jw9B 249 12.26 c.111.1.1 67377 1trb 320 13.38 3cggA 195 15.45 1vl2A 421 20.27 c.26.2.1,d.210.1.1 108708,108709 1nofA 383 20.72 b.71.1.2,c.1.8.3 92020,92021 1jhdA 396 23.22 b.122.1.3,c.26.1.5 66712,66713 2yxdA 183 23.44 2bw0A 329 26.92 b.46.1.1,c.65.1.1 129303,129304 1np7A 489 27.80 a.99.1.1,c.28.1.1 80677,80678 1s3iA 310 27.84 b.46.1.1,c.65.1.1 98435,98436 1pe1A 267 27.85 c.1.10.4 94591 1u3dA 509 30.01 a.99.1.1,c.28.1.1 107638,107639 2nwrA 267 31.14 2cycA 375 31.16 1j09A 468 31.88 a.97.1.1,c.26.1.1 77025,77026 2eq6A 464 32.05 1drw 273 32.57 1zhaA 267 34.75 3grs 478 35.57 2fuvA 549 35.83 1korA 400 36.26 c.26.2.1,d.210.1.1 72824,72825 1v5xA 203 36.43 c.1.2.4 100377 2r9zA 463 36.43 1owlA 484 39.99 a.99.1.1,c.28.1.1 93647,93648 1fbnA 230 41.19 c.66.1.3 34181 1v1aA 309 42.28 c.72.1.1 100249 1nzjA 298 42.80 c.26.1.1 92377 2dfaA 250 44.05 c.6.2.5 131469 1trbA 320 44.58 c.3.1.5,c.3.1.5 30529,30530 3d1cA 369 44.68 1g8sA 230 44.85 c.66.1.3 90507 1hyuA 521 45.57 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2pwyA 258 46.25 1tezA 474 46.48 a.99.1.1,c.28.1.1 112409,112410 1wy7A 207 50.04 c.66.1.32 121433 2exxA 306 50.84 1yvvA 336 51.14 2qghA 425 51.72 2b82A 211 51.79 c.108.1.12 128057 2gasA 307 54.02 1o17A 345 54.59 a.46.2.1,c.27.1.1 80765,80766 2dcnA 311 54.92 c.72.1.1 131374 2ip1A 432 56.67 3grsA 478 56.77 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1v6tA 255 58.18 c.6.2.5 113550 1zk7A 467 58.46 2az4A 429 58.82 d.157.1.10 127597 1fl2A 310 59.17 c.3.1.5,c.3.1.5 59869,59870 2pbfA 227 60.37 2yvlA 248 60.84 1b74A 254 62.50 c.78.2.1,c.78.2.1 35264,35265 2ggoA 401 64.65 2q3uA 383 64.98 d.126.1.6 139809 1i6lA 328 65.84 c.26.1.1 66041 2gpyA 233 65.96 1wznA 252 66.30 c.66.1.43 121525 1fmtA 314 66.92 b.46.1.1,c.65.1.1 25758,34174 1s0uA 408 67.75 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1r6uA 437 68.23 c.26.1.1 97163 2fk8A 318 70.98 c.66.1.18 133648 1g8fA 511 71.69 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2e57A 637 73.01 1dv1A 449 73.06 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1ff9A 450 74.60 c.2.1.3,d.81.1.2 30039,39954 1nal1 297 75.35 1qmgA 524 75.41 a.100.1.2,c.2.1.6 18785,30182 1x6vA 630 76.29 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2cvjA 180 76.55 2pxxA 215 77.96 3cvoA 202 78.23 2q0lA 311 80.36 1x19A 359 81.27 1qtqA 553 84.03 b.53.1.2,c.26.1.1 26940,31579 3bxoA 239 84.93 2blnA 305 85.29 b.46.1.1,c.65.1.1 128734,128735 2j07A 420 85.70 a.99.1.1,c.28.1.1 137891,137892 1w4xA 542 85.89 c.3.1.5,c.3.1.5 109171,109172 2ywlA 180 86.24 1krhA 338 87.00 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1qycA 308 87.33 c.2.1.2 96581