# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b6tA 159 4.05e-18 1b6tA c.26.1.3 31600 1qjcA 158 5.29e-18 1b6tA c.26.1.3 63328 1cozA 129 7.86e-18 1cozA c.26.1.2 31598 1od6A 160 5.62e-16 c.26.1.3 86836 1tfuA 157 4.22e-14 c.26.1.3 106859 1kamA 194 7.20e-14 c.26.1.3 72254 1yumA 242 7.33e-14 1k4mA 213 4.68e-13 c.26.1.3 77258 2h29A 189 1.81e-11 1lw7A 365 1.80e-07 c.26.1.3,c.37.1.1 74295,74296 1f9aA 168 2.07e-07 1f9aA c.26.1.3 31602 2qjoA 341 6.74e-07 1kkuA 279 2.62e-06 c.26.1.3 72661 1nuuA 252 3.16e-06 c.26.1.3 86209 1kqnA 279 4.62e-06 c.26.1.3 77492 2qjtA 352 5.13e-06 1ej2A 181 1.47e-05 1f9aA c.26.1.3 59414 1mrzA 293 2.42e-05 b.43.5.1,c.26.1.3 91452,91453 1m8jA 181 3.28e-05 c.26.1.3 84875 1ihoA 283 5.48e-03 1ihoA c.26.1.4 62390 1v8fA 276 7.36e-03 c.26.1.4 100503 1n2eA 300 2.00e-02 c.26.1.4 85268 1jhdA 396 2.27e-02 b.122.1.3,c.26.1.5 66712,66713 2a84A 300 9.49e-02 c.26.1.4 126389 1hybA 181 1.47e-01 1f9aA c.26.1.3 61399 1ulyA 192 1.11e+00 a.4.5.58 113297 1j34A 129 1.16e+00 d.169.1.1 84048 1v47A 349 1.18e+00 b.122.1.3,c.26.1.5 100292,100293 1vbkA 307 1.39e+00 c.26.2.6,d.308.1.1 119957,119958 2brxA 244 1.51e+00 c.73.1.3 129028 2ebjA 192 1.83e+00 2ip1A 432 1.98e+00 1s0uA 408 2.01e+00 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2chuA 296 2.40e+00 c.92.2.4 130485 1r6xA 395 2.60e+00 b.122.1.3,c.26.1.5 97167,97168 1r6uA 437 2.83e+00 c.26.1.1 97163 1ixxA 129 3.90e+00 1ixxB d.169.1.1 42335 2qiwA 255 4.04e+00 1bkdS 439 4.62e+00 1bkdS a.117.1.1 19111 1w15A 153 4.77e+00 b.7.1.2 109041 1vp8A 201 5.04e+00 c.49.1.2 113947 1pg6A 243 5.23e+00 b.82.5.2 94673 1vjrA 271 5.84e+00 c.108.1.14 100832 1wehA 171 6.54e+00 c.129.1.1 114551 1g8fA 511 6.84e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1pieA 419 6.84e+00 d.14.1.5,d.58.26.7 94706,94707 3b2nA 133 7.24e+00 1vqtA 213 7.67e+00 c.1.2.3 120417 2e87A 357 8.04e+00 1ccwA 137 8.47e+00 1be1 c.23.6.1 31238 1j1nA 492 9.92e+00 c.94.1.1 83978 2sas 185 1.01e+01 2sas 2sasA 185 1.01e+01 a.39.1.5 17258 1nvvS 481 1.02e+01 a.117.1.1 86279 3c3pA 210 1.02e+01 2j9cA 119 1.05e+01 1aazA 87 1.06e+01 1aba c.47.1.1 32761 1vlmA 219 1.06e+01 c.66.1.41 108836 1wotA 98 1.08e+01 d.218.1.5 109470 2i2qA 137 1.10e+01 1j1uA 306 1.11e+01 c.26.1.1 83980 1i3kA 348 1.22e+01 1xel c.2.1.2 61595 1mjhA 162 1.22e+01 1mjhA c.26.2.4 31639 2r5oA 188 1.23e+01 1ek6A 348 1.27e+01 1xel c.2.1.2 29800 1qqcA 773 1.31e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1q0pA 223 1.36e+01 c.62.1.1 95507 2ag6A 314 1.39e+01 2jgyA 279 1.42e+01 1x1eA 239 1.47e+01 2r4vA 247 1.51e+01 2fwrA 472 1.56e+01 c.37.1.19,c.37.1.19 134253,134254 2bl5A 140 1.58e+01 d.51.1.1 128728 3cniA 156 1.59e+01 2dafA 118 1.61e+01 2ekpA 239 1.62e+01 1aba 87 1.62e+01 1aba 1abaA 87 1.62e+01 c.47.1.1 32760 2rffA 111 1.64e+01 2d16A 162 1.65e+01 2ii0A 490 1.67e+01 a.117.1.1 137425 1qmvA 197 1.88e+01 1qq2A c.47.1.10 33066 1w2qA 127 1.95e+01 2gb7A 305 1.96e+01 1vr3A 191 2.00e+01 b.82.1.6 120431 1c4xA 285 2.01e+01 1c4xA c.69.1.10 34684 1efdN 266 2.03e+01 1efdN c.92.2.1 35597 2ig6A 150 2.04e+01 2yv5A 302 2.08e+01 1wr8A 231 2.08e+01 c.108.1.10 114836 2i6jA 161 2.11e+01 4ts1A 319 2.14e+01 2ts1 c.26.1.1 31565 1bf6A 291 2.18e+01 1pscA c.1.9.3 29065 1jilA 420 2.20e+01 c.26.1.1 66745 1be1 137 2.27e+01 1be1 1ep3A 311 2.28e+01 2dorA c.1.4.1 28597 1budA 197 2.31e+01 1atlA d.92.1.9 40328 1x9gA 200 2.35e+01 c.33.1.3 109527 1zyeA 220 2.38e+01 c.47.1.10 125817 2fexA 188 2.45e+01 c.23.16.2 133354 1jmvA 141 2.47e+01 c.26.2.4 66897 2pcqA 283 2.57e+01 1ehiA 377 2.69e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1qwgA 251 2.73e+01 c.1.27.1 96473 1ftpA 133 2.74e+01 1hmt b.60.1.2 27199 1b55A 169 2.85e+01 1btkA b.55.1.1 26963 2fdxA 138 2.85e+01 c.23.5.1 31192 1u1jA 765 2.94e+01 c.1.22.2,c.1.22.2 107590,107591 1i6wA 181 3.02e+01 1i6wA c.69.1.18 61859 2ph7A 246 3.05e+01 1k0rA 366 3.07e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1kanA 253 3.10e+01 1knyA a.24.16.1,d.218.1.1 75878,75879 1ya5T 90 3.11e+01 2i7hA 189 3.19e+01 5nul 138 3.23e+01 5nul 5nulA 138 3.23e+01 c.23.5.1 31191 2hgcA 102 3.28e+01 1jj2S 119 3.30e+01 1ffkQ b.34.5.1 63104 2pn8A 211 3.32e+01 1uehA 253 3.42e+01 c.101.1.1 99259 3b40A 417 3.42e+01 3bofA 566 3.44e+01 2c0dA 221 3.45e+01 1knyA 253 3.46e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1j08A 226 3.49e+01 c.47.1.2,c.47.1.2 83855,83856 1widA 130 3.50e+01 b.142.1.2 114667 2jbaA 127 3.50e+01 2dumA 170 3.50e+01 1twfA 1733 3.54e+01 e.29.1.2 112725 1aqkL 216 3.58e+01 8fabA b.1.1.1,b.1.1.2 20192,21208 2fdrA 229 3.59e+01 c.108.1.6 133319 1vcsA 102 3.68e+01 a.47.2.1 119985 1tb3A 352 3.76e+01 c.1.4.1 119205 2qh9A 184 3.77e+01 3ciwA 348 3.92e+01 2ts1 419 4.03e+01 2ts1 1ispA 181 4.07e+01 c.69.1.18 76778 3cqtA 79 4.13e+01 2qbuA 232 4.20e+01 1c76A 136 4.25e+01 2sak d.15.5.1 37718 1xn9A 101 4.29e+01 d.12.1.3 115578 1vqoT 120 4.34e+01 b.34.5.1 120381 2pjkA 178 4.34e+01 1qo2A 241 4.43e+01 1qo2A c.1.2.1 28533 2p3yA 491 4.46e+01 2asbA 251 4.50e+01 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2cm5A 166 4.53e+01 b.7.1.2 130613 2oyrA 258 4.60e+01 1mdbA 539 4.61e+01 e.23.1.1 79008 1aq0A 306 4.66e+01 1aq0A c.1.8.3 28842 2uubQ 105 4.67e+01 b.40.4.5 139948 1bh5A 183 4.67e+01 1qipA d.32.1.1 38476 1vmjA 151 4.72e+01 d.273.1.1 113679 2z08A 137 4.75e+01 1zzmA 259 4.75e+01 c.1.9.12 125911 2h8lA 252 4.81e+01 1v6tA 255 4.83e+01 c.6.2.5 113550 2vqeQ 105 4.85e+01 2peqA 134 4.90e+01 1jkgA 140 4.90e+01 d.17.4.2 66795 1q52A 314 4.95e+01 c.14.1.3 95846 1nu0A 138 4.98e+01 c.55.3.8 92165 1yzfA 195 4.98e+01 c.23.10.5 124275 1sk7A 198 4.98e+01 a.132.1.2 105671 1s57A 153 4.99e+01 d.58.6.1 112028 1shfA 59 5.13e+01 1bbzA b.34.2.1 24462 2pezA 179 5.23e+01 1svcP 365 5.27e+01 1a3qA b.1.18.1,b.2.5.3 21924,22443 2rn7A 108 5.29e+01 1t0yA 122 5.31e+01 d.15.1.1 99066 3b9oA 440 5.32e+01 2q83A 346 5.52e+01 1wmhA 89 5.54e+01 d.15.2.2 114744 1mtyG 162 5.55e+01 1mtyG a.23.3.1 16498 2oycA 306 5.59e+01 2o1eA 312 5.62e+01 1q7zA 566 5.64e+01 c.1.21.2,c.1.26.1 96090,96091 1s1eA 224 5.83e+01 a.39.1.5 112007 1a8y 367 5.89e+01 1a8y 1a8yA 367 5.89e+01 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1azgB 67 5.93e+01 1bbzA b.34.2.1 24471 2chdA 142 5.95e+01 1ofuA 320 6.05e+01 c.32.1.1,d.79.2.1 86972,86973 1a0nB 69 6.12e+01 1bbzA b.34.2.1 24469 1k0mA 241 6.15e+01 a.45.1.1,c.47.1.5 67949,67950 2b81A 323 6.21e+01 2ev0A 142 6.21e+01 a.4.5.24,a.76.1.1 132413,132414 1deoA 233 6.37e+01 1deoA c.23.10.4 31345 1b00A 127 6.39e+01 3chy c.23.1.1 31122 2ebeA 106 6.40e+01 3ccyA 203 6.44e+01 1qapA 296 6.48e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 2pusA 852 6.51e+01 2nq5A 755 6.55e+01 2qtdA 105 6.56e+01 2gk4A 232 6.61e+01 2hi1A 330 6.65e+01 1ghsA 306 6.70e+01 1aq0A c.1.8.3 28840 1ituA 369 6.71e+01 c.1.9.7 71423 3cc8A 230 6.77e+01 1j6uA 469 6.82e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2c4wA 176 6.85e+01 2i5eA 211 6.87e+01 2z1nA 260 6.96e+01 2i57A 438 6.97e+01 3b8xA 390 6.97e+01 2c4eA 302 6.98e+01 2c1dB 137 7.10e+01 2yxnA 322 7.19e+01 1tc5A 194 7.20e+01 c.110.1.1 106752 2actA 220 7.30e+01 d.3.1.1 37002 3c6cA 316 7.39e+01 1ttwA 138 7.45e+01 d.198.1.1 107308 1fvuA 133 7.46e+01 1ixxB d.169.1.1 42345 1uz5A 402 7.59e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1avzC 57 7.65e+01 1bbzA b.34.2.1 24467 2c4nA 250 7.84e+01 c.108.1.14 129837 1fjgQ 105 7.87e+01 1fjfQ b.40.4.5 25352 1r4kA 169 7.94e+01 b.34.14.1 96997