# command:# Seed set to 1216816559 # command:# Prefix for input files set to # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.6500 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9000 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5.0000 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5000 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5000 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5000 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8.0000 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10.0000 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12.0000 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:CPU_time= 27.147 sec, elapsed time= 27.281 sec. # command:# Prefix for input files set to # command:# Making conformation for sequence T0506 numbered 1 through 254 Created new target T0506 from T0506.upper-only.a2m # command:# command:# No conformations to remove in PopConform # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 4 alphabets from alpha.alphabet # command:# Prefix for input files set to # command:# reading script from file try1.costfcn # reading predictions from T0506.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0506.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # reading script from file T0506.dssp-ehl2.constraints # HelixConstraint # Added 27 helix constraints for (T0506)E25 through (T0506)S37 # StrandConstraint # Added 8 Strand constraints for (T0506)T55 through (T0506)I61 # StrandConstraint # Added 4 Strand constraints for (T0506)P67 through (T0506)A71 # HelixConstraint # Added 9 helix constraints for (T0506)L74 through (T0506)M81 # StrandConstraint # Added 6 Strand constraints for (T0506)I87 through (T0506)A92 # StrandConstraint # Added 14 Strand constraints for (T0506)R104 through (T0506)R113 # HelixConstraint # Added 19 helix constraints for (T0506)V119 through (T0506)R129 # StrandConstraint # Added 20 Strand constraints for (T0506)R143 through (T0506)N155 # StrandConstraint Warning: can't construct Strand constraints for (T0506)A162 and (T0506)S163 as there are no CA atoms with usable spacing # HelixConstraint # Added 2 helix constraints for (T0506)T166 through (T0506)L170 # HelixConstraint # Added 35 helix constraints for (T0506)A177 through (T0506)L191 # HelixConstraint # Added 17 helix constraints for (T0506)K195 through (T0506)A205 # StrandConstraint # Added 6 Strand constraints for (T0506)W212 through (T0506)I217 # StrandConstraint # Added 1 Strand constraints for (T0506)D223 through (T0506)A225 # StrandConstraint # Added 2 Strand constraints for (T0506)A231 through (T0506)W234 # HelixConstraint # Added 19 helix constraints for (T0506)L242 through (T0506)L252 # reading script from file T0506.undertaker-align.sheets # SheetConstraint # Added 29 sheet constraints for (T0506)D220--(T0506)A225 (T0506)F235--(T0506)L230 with (T0506)D220 of first strand Hbonded # SheetConstraint # Added 12 sheet constraints for (T0506)K213--(T0506)T215 (T0506)A225--(T0506)D223 with (T0506)K213 of first strand Hbonded # SheetConstraint # Added 11 sheet constraints for (T0506)S216--(T0506)D218 (T0506)D223--(T0506)G221 with (T0506)S216 of first strand Hbonded # SheetConstraint # Added 28 sheet constraints for (T0506)G151--(T0506)G156 (T0506)I165--(T0506)R160 with (T0506)V152 of first strand Hbonded # SheetConstraint # Added 33 sheet constraints for (T0506)P103--(T0506)G109 (T0506)G156--(T0506)E150 with (T0506)R104 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)V108--(T0506)I114 (T0506)E150--(T0506)L144 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 23 sheet constraints for (T0506)P67--(T0506)A71 (T0506)L147--(T0506)R143 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 43 sheet constraints for (T0506)A85--(T0506)A92 (T0506)A111--(T0506)R104 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 15 sheet constraints for (T0506)I59--(T0506)E62 (T0506)F69--(T0506)T66 with (T0506)G60 of first strand Hbonded # SheetConstraint # Added 44 sheet constraints for (T0506)R38--(T0506)L45 (T0506)I59--(T0506)P52 with (T0506)R38 of first strand Hbonded # SheetConstraint # Added 6 sheet constraints for (T0506)A225--(T0506)S226 (T0506)L230--(T0506)D229 with (T0506)S226 of first strand Hbonded # SheetConstraint # Added 33 sheet constraints for (T0506)P103--(T0506)G109 (T0506)G156--(T0506)E150 with (T0506)R104 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)V108--(T0506)I114 (T0506)E150--(T0506)L144 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 21 sheet constraints for (T0506)T66--(T0506)F70 (T0506)R148--(T0506)L144 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)A85--(T0506)L91 (T0506)A111--(T0506)L105 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 15 sheet constraints for (T0506)I59--(T0506)E62 (T0506)F69--(T0506)T66 with (T0506)G60 of first strand Hbonded # SheetConstraint # Added 52 sheet constraints for (T0506)R38--(T0506)D46 (T0506)I59--(T0506)Y51 with (T0506)R38 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)T106--(T0506)R110 (T0506)N155--(T0506)G151 with (T0506)T106 of first strand Hbonded # SheetConstraint # Added 24 sheet constraints for (T0506)R110--(T0506)I114 (T0506)E150--(T0506)R146 with (T0506)R110 of first strand Hbonded # SheetConstraint # Added 36 sheet constraints for (T0506)P67--(T0506)G73 (T0506)T149--(T0506)R143 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)A85--(T0506)L91 (T0506)A111--(T0506)L105 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 15 sheet constraints for (T0506)I59--(T0506)E62 (T0506)F69--(T0506)T66 with (T0506)G60 of first strand Hbonded # SheetConstraint # Added 38 sheet constraints for (T0506)A40--(T0506)D46 (T0506)T57--(T0506)Y51 with (T0506)A40 of first strand Hbonded # SheetConstraint # Added 36 sheet constraints for (T0506)E150--(T0506)G156 (T0506)F235--(T0506)D229 with (T0506)E150 of first strand Hbonded # SheetConstraint # Added 28 sheet constraints for (T0506)L105--(T0506)R110 (T0506)I154--(T0506)T149 with (T0506)T106 of first strand Hbonded # SheetConstraint # Added 24 sheet constraints for (T0506)R110--(T0506)I114 (T0506)R148--(T0506)L144 with (T0506)R110 of first strand Hbonded # SheetConstraint # Added 35 sheet constraints for (T0506)T66--(T0506)A72 (T0506)R148--(T0506)T142 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)A85--(T0506)L91 (T0506)A111--(T0506)L105 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 15 sheet constraints for (T0506)I59--(T0506)E62 (T0506)F69--(T0506)T66 with (T0506)G60 of first strand Hbonded # SheetConstraint # Added 44 sheet constraints for (T0506)T39--(T0506)D46 (T0506)N58--(T0506)Y51 with (T0506)A40 of first strand Hbonded # SheetConstraint # Added 23 sheet constraints for (T0506)R104--(T0506)V108 (T0506)N155--(T0506)G151 with (T0506)R104 of first strand Hbonded # SheetConstraint # Added 29 sheet constraints for (T0506)V108--(T0506)R113 (T0506)E150--(T0506)Y145 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 42 sheet constraints for (T0506)T66--(T0506)G73 (T0506)R148--(T0506)D141 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 43 sheet constraints for (T0506)A85--(T0506)A92 (T0506)A111--(T0506)R104 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 44 sheet constraints for (T0506)T39--(T0506)D46 (T0506)N58--(T0506)Y51 with (T0506)A40 of first strand Hbonded # SheetConstraint # Added 14 sheet constraints for (T0506)I154--(T0506)G157 (T0506)A231--(T0506)S228 with (T0506)I154 of first strand Hbonded # SheetConstraint # Added 33 sheet constraints for (T0506)P103--(T0506)G109 (T0506)G156--(T0506)E150 with (T0506)R104 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)V108--(T0506)I114 (T0506)E150--(T0506)L144 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 42 sheet constraints for (T0506)T66--(T0506)G73 (T0506)R148--(T0506)D141 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 43 sheet constraints for (T0506)A85--(T0506)A92 (T0506)A111--(T0506)R104 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 52 sheet constraints for (T0506)R38--(T0506)D46 (T0506)I59--(T0506)Y51 with (T0506)R38 of first strand Hbonded # SheetConstraint # Added 14 sheet constraints for (T0506)T106--(T0506)G109 (T0506)Q153--(T0506)E150 with (T0506)T106 of first strand Hbonded # SheetConstraint # Added 42 sheet constraints for (T0506)V108--(T0506)G115 (T0506)E150--(T0506)R143 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 42 sheet constraints for (T0506)G65--(T0506)A72 (T0506)T149--(T0506)T142 with (T0506)G65 of first strand Hbonded # SheetConstraint # Added 29 sheet constraints for (T0506)I87--(T0506)A92 (T0506)G109--(T0506)R104 with (T0506)I87 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 15 sheet constraints for (T0506)I59--(T0506)E62 (T0506)F69--(T0506)T66 with (T0506)G60 of first strand Hbonded # SheetConstraint # Added 38 sheet constraints for (T0506)A40--(T0506)D46 (T0506)T57--(T0506)Y51 with (T0506)A40 of first strand Hbonded # SheetConstraint # Added 33 sheet constraints for (T0506)P103--(T0506)G109 (T0506)G156--(T0506)E150 with (T0506)R104 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)V108--(T0506)I114 (T0506)E150--(T0506)L144 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 42 sheet constraints for (T0506)T66--(T0506)G73 (T0506)R148--(T0506)D141 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 35 sheet constraints for (T0506)R86--(T0506)A92 (T0506)R110--(T0506)R104 with (T0506)I87 of first strand Hbonded # SheetConstraint # Added 30 sheet constraints for (T0506)A40--(T0506)L45 (T0506)L91--(T0506)R86 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)T39--(T0506)A43 (T0506)N58--(T0506)T54 with (T0506)A40 of first strand Hbonded # SheetConstraint # Added 20 sheet constraints for (T0506)Q153--(T0506)G157 (T0506)W234--(T0506)L230 with (T0506)I154 of first strand Hbonded # SheetConstraint # Added 15 sheet constraints for (T0506)L105--(T0506)V108 (T0506)I154--(T0506)G151 with (T0506)T106 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)V108--(T0506)I114 (T0506)E150--(T0506)L144 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 23 sheet constraints for (T0506)P67--(T0506)A71 (T0506)L147--(T0506)R143 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)A85--(T0506)L91 (T0506)A111--(T0506)L105 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 44 sheet constraints for (T0506)R38--(T0506)L45 (T0506)I59--(T0506)P52 with (T0506)R38 of first strand Hbonded # SheetConstraint # Added 33 sheet constraints for (T0506)P103--(T0506)G109 (T0506)G156--(T0506)E150 with (T0506)R104 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)V108--(T0506)I114 (T0506)E150--(T0506)L144 with (T0506)V108 of first strand Hbonded # SheetConstraint # Added 23 sheet constraints for (T0506)P67--(T0506)A71 (T0506)L147--(T0506)R143 with (T0506)P67 of first strand Hbonded # SheetConstraint # Added 37 sheet constraints for (T0506)A85--(T0506)L91 (T0506)A111--(T0506)L105 with (T0506)A85 of first strand Hbonded # SheetConstraint # Added 22 sheet constraints for (T0506)A40--(T0506)T44 (T0506)L91--(T0506)I87 with (T0506)A41 of first strand Hbonded # SheetConstraint # Added 9 sheet constraints for (T0506)I59--(T0506)I61 (T0506)F69--(T0506)P67 with (T0506)G60 of first strand Hbonded # SheetConstraint # Added 44 sheet constraints for (T0506)R38--(T0506)L45 (T0506)I59--(T0506)P52 with (T0506)R38 of first strand Hbonded # reading script from file rr.constraints # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.938 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.932 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.932 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.930 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.930 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.930 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.928 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.928 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.927 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.927 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.926 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.926 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.925 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.925 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.924 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.924 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.923 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.923 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.923 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.922 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.922 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.922 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.921 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.921 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.920 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.920 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.920 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.919 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.919 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.919 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.919 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.918 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.918 # Constraint # added constraint: constraint((T0506)L224.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.918 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.918 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.918 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.918 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.917 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.917 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.917 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.917 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.917 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.916 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.915 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.915 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.915 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.914 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.913 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.913 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.913 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.913 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.913 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)Y53.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.912 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.911 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.911 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.911 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.911 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.911 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.910 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A41.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)Y53.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.909 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.908 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.907 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.907 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)T55.CB) [> -10.000 = 7.000 < 14.000] w=0.907 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.907 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.907 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.907 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.906 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.906 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.906 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.905 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.904 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.904 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.904 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.904 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.904 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.904 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)Y53.CB) [> -10.000 = 7.000 < 14.000] w=0.904 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.903 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.903 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.903 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.903 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.903 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.903 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.903 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.902 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.901 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.900 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.900 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.900 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.900 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.899 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.899 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.899 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.899 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.898 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.898 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.897 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.897 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.897 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.897 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.897 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.896 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.896 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.896 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.896 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.896 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.896 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.896 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.895 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.894 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.893 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.893 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.893 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.893 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.893 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.892 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L42.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.891 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.890 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.889 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.889 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.889 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.889 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.889 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A40.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.888 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.887 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)I61.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.886 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)D223.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.885 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A92.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.884 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.883 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.882 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.882 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.882 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.882 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.882 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.882 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.881 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.880 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)R148.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.879 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)F94.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.878 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)T66.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A92.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I61.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.877 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.876 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.875 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.874 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.874 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.874 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.874 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.874 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.874 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.873 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.872 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)G151.CA, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)V108.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)R148.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.871 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.870 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.869 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.868 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.867 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)P93.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)E150.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.866 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.865 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L42.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)V108.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.864 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.863 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.862 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.861 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.861 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.861 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.861 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.861 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.861 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.861 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I61.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.860 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.859 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.858 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.857 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)E62.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.856 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)G73.CA, (T0506)P93.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)F94.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.855 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.854 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.853 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A43.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)P93.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.852 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)V108.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.851 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)G151.CA) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.850 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.849 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)L224.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.848 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.847 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.847 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.847 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.847 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.847 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.847 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.846 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.845 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)A236.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.844 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.843 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.842 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)L224.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.841 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.840 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)L224.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.839 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)L76.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A43.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.838 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)R148.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.837 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.836 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.835 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)D112.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)T44.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)L224.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.834 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.833 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)Y53.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)G206.CA, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.832 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.831 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.830 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.830 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.830 # Constraint # added constraint: constraint((T0506)A225.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.830 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.830 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.830 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)D112.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)E150.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.829 # Constraint # added constraint: constraint((T0506)R200.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.828 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)R148.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.827 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)E150.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)D223.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)R79.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.826 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.825 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.824 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)D112.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)L224.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)T66.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.823 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.822 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)R31.CB, (T0506)A40.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.821 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.820 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)E150.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)D112.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)E62.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.819 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)K213.CB, (T0506)K243.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.818 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)D112.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.817 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)T166.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.816 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.815 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.815 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.815 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.815 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.815 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.815 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.815 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.814 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)V239.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)R148.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.813 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.812 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.812 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.812 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.812 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.812 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.812 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.812 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.811 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.810 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.809 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)T66.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.808 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.807 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)D223.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.806 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)R79.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.805 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)D112.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.804 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)L233.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.803 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.802 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.801 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.800 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.800 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.800 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.800 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.800 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)L224.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.799 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)A85.CB, (T0506)D112.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.798 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)S37.CB, (T0506)T55.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)Y53.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.797 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.796 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.795 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.794 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.793 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)G73.CA, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.792 # Constraint # added constraint: constraint((T0506)G95.CA, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)V27.CB, (T0506)S37.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.791 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)N80.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.790 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)S163.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.789 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.788 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.788 # Constraint # added constraint: constraint((T0506)A231.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.788 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.788 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.788 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.788 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.787 # Constraint # added constraint: constraint((T0506)G196.CA, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.787 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)G95.CA) [> -10.000 = 7.000 < 14.000] w=0.787 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.787 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.787 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.787 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)G95.CA, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.786 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)P63.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.785 # Constraint # added constraint: constraint((T0506)E197.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.784 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)R79.CB) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.783 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)P93.CB) [> -10.000 = 7.000 < 14.000] w=0.782 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.782 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.782 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.782 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.782 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.782 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)V119.CB) [> -10.000 = 7.000 < 14.000] w=0.782 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.781 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)G151.CA) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)G206.CA, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.780 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)P140.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.779 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)L233.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.778 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)F235.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)E118.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A85.CB) [> -10.000 = 7.000 < 14.000] w=0.777 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.776 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)V119.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.775 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)S138.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.774 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)D84.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)L204.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.773 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)A236.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.772 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)G73.CA, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)G196.CA, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.771 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)I194.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)A183.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.770 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)D112.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.769 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)N80.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.768 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)A205.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)G95.CA) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.767 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.766 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.765 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.764 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)G151.CA) [> -10.000 = 7.000 < 14.000] w=0.763 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)G196.CA, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.762 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.761 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)E150.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.760 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.759 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.759 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.759 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.759 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L45.CB) [> -10.000 = 7.000 < 14.000] w=0.759 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.759 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.759 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.758 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)E185.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L45.CB) [> -10.000 = 7.000 < 14.000] w=0.757 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)A231.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)V119.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.756 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.755 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)A159.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)I222.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)A225.CB, (T0506)E240.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.754 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.753 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.753 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.753 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.753 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.753 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.753 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.752 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.752 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.752 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.752 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.752 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.752 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L76.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.751 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.750 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)K96.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)I217.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.749 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.748 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.748 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.748 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.748 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.748 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)V119.CB) [> -10.000 = 7.000 < 14.000] w=0.747 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.747 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.747 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.747 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.747 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.746 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.746 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.746 # Constraint # added constraint: constraint((T0506)F235.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.746 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.746 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.746 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.746 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)P219.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)G157.CA, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.745 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.744 # Constraint # added constraint: constraint((T0506)R143.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.744 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.744 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.744 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.744 # Constraint # added constraint: constraint((T0506)A225.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.744 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.744 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L45.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.743 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)F235.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.742 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)A124.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.741 # Constraint # added constraint: constraint((T0506)S226.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)S37.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)L233.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.740 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.739 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.739 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.739 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.739 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.739 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.739 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.739 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)R232.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.738 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)G210.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.737 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G65.CA) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.736 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.735 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.734 # Constraint # added constraint: constraint((T0506)D220.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.734 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.734 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.734 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.734 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.734 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.733 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.732 # Constraint # added constraint: constraint((T0506)N164.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.731 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.730 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.729 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)D223.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)T166.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.728 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)N161.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.727 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)A26.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.726 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.725 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.724 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.724 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.724 # Constraint # added constraint: constraint((T0506)G210.CA, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.724 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.724 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)G156.CA, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.723 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)D220.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)S226.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.722 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)L230.CB, (T0506)E240.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)G95.CA) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)G151.CA) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)A205.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.721 # Constraint # added constraint: constraint((T0506)A85.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)G73.CA) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)S226.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)G115.CA) [> -10.000 = 7.000 < 14.000] w=0.720 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)G151.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)D220.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)G95.CA, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.719 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)A124.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)T215.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)E150.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.718 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.717 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.717 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.717 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.717 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.717 # Constraint # added constraint: constraint((T0506)P140.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.717 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.716 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)N80.CB) [> -10.000 = 7.000 < 14.000] w=0.715 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.714 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.714 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.714 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.714 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.714 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.714 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.714 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.713 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.713 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.713 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.713 # Constraint # added constraint: constraint((T0506)V239.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.713 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.713 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)S88.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)G65.CA) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.712 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.711 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.711 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.711 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.711 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.711 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.710 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.709 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)G156.CA, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.708 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)G156.CA, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)I61.CB) [> -10.000 = 7.000 < 14.000] w=0.707 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)A26.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.706 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.705 # Constraint # added constraint: constraint((T0506)L233.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.705 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.705 # Constraint # added constraint: constraint((T0506)S49.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.705 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.705 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.705 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.704 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.704 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)A124.CB) [> -10.000 = 7.000 < 14.000] w=0.704 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)G115.CA) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.703 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)K96.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)P140.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)R31.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.702 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)S216.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.701 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)L121.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)S37.CB, (T0506)Y53.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.700 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)G95.CA) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.699 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.698 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)V119.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)I61.CB) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.697 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.696 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)G151.CA) [> -10.000 = 7.000 < 14.000] w=0.695 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.694 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.694 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.694 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)V29.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.693 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)F235.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.692 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)E150.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)D220.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.691 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)R200.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)R232.CB, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.690 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)P158.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.689 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)L204.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.688 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)P23.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.687 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)P11.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.686 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.685 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.685 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.685 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.685 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.685 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.685 # Constraint # added constraint: constraint((T0506)D223.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)G97.CA) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.684 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.683 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.683 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.683 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.683 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.682 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.682 # Constraint # added constraint: constraint((T0506)E118.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.682 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.682 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.682 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.682 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.682 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)D64.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.681 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)E197.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.680 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)G210.CA, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)R31.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.679 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.678 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.678 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.678 # Constraint # added constraint: constraint((T0506)R31.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.678 # Constraint # added constraint: constraint((T0506)D84.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.678 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.678 # Constraint # added constraint: constraint((T0506)P219.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.678 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)S37.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)G157.CA, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.677 # Constraint # added constraint: constraint((T0506)G156.CA, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.676 # Constraint # added constraint: constraint((T0506)P23.CB, (T0506)V33.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)S138.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)S37.CB, (T0506)T106.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)G97.CA) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.675 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.674 # Constraint # added constraint: constraint((T0506)D173.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.674 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.674 # Constraint # added constraint: constraint((T0506)V29.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.674 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.674 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.674 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)G65.CA) [> -10.000 = 7.000 < 14.000] w=0.674 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)E240.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.673 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)V27.CB, (T0506)V108.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)E240.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.672 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.671 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.670 # Constraint # added constraint: constraint((T0506)R211.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.669 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)D220.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.668 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.667 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)K96.CB) [> -10.000 = 7.000 < 14.000] w=0.667 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.667 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.667 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.667 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.667 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.667 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)T166.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.666 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.665 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.664 # Constraint # added constraint: constraint((T0506)A124.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)L76.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.663 # Constraint # added constraint: constraint((T0506)G151.CA, (T0506)A183.CB) [> -10.000 = 7.000 < 14.000] w=0.662 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.662 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.662 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.662 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.662 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.662 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.662 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.661 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.661 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.661 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.661 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.661 # Constraint # added constraint: constraint((T0506)P140.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.661 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.660 # Constraint # added constraint: constraint((T0506)D173.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.660 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.660 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)E185.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)W234.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.659 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.658 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.658 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.658 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.658 # Constraint # added constraint: constraint((T0506)V8.CB, (T0506)L45.CB) [> -10.000 = 7.000 < 14.000] w=0.658 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.658 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.657 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)T44.CB) [> -10.000 = 7.000 < 14.000] w=0.657 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.657 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.657 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.657 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.657 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.657 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)A205.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)K96.CB, (T0506)G151.CA) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.656 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)G97.CA) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)G115.CA) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)S228.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.655 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)D84.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.654 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)E197.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)P63.CB, (T0506)R148.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)V119.CB) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.653 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.652 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.652 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.652 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.652 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.652 # Constraint # added constraint: constraint((T0506)R200.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.652 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.652 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)D169.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)A128.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.651 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)E118.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.650 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)G73.CA, (T0506)E82.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)A231.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)R143.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.649 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)A177.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)S138.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.648 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.647 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.647 # Constraint # added constraint: constraint((T0506)T66.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.647 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.647 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.647 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)G60.CA) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)R31.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)Y51.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.646 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.645 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)R79.CB) [> -10.000 = 7.000 < 14.000] w=0.645 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.645 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.645 # Constraint # added constraint: constraint((T0506)A22.CB, (T0506)P67.CB) [> -10.000 = 7.000 < 14.000] w=0.645 # Constraint # added constraint: constraint((T0506)G206.CA, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.645 # Constraint # added constraint: constraint((T0506)R79.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.645 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)P23.CB, (T0506)T54.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)V119.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.644 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)K96.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.643 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.642 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.642 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.642 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.642 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.641 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.640 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.639 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.639 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.639 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.639 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.639 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.638 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.638 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.638 # Constraint # added constraint: constraint((T0506)R31.CB, (T0506)L42.CB) [> -10.000 = 7.000 < 14.000] w=0.638 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.638 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.638 # Constraint # added constraint: constraint((T0506)V27.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)D112.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)L76.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.637 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.636 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)A128.CB, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.635 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)G73.CA, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.634 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)F94.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.633 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.632 # Constraint # added constraint: constraint((T0506)S37.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)I9.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)D112.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.631 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)L42.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.630 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.629 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.629 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)R79.CB) [> -10.000 = 7.000 < 14.000] w=0.629 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.629 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.629 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.629 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.629 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.628 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)K132.CB) [> -10.000 = 7.000 < 14.000] w=0.628 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.628 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.628 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.628 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.628 # Constraint # added constraint: constraint((T0506)A128.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.628 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.627 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.627 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.627 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.627 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.627 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)A236.CB) [> -10.000 = 7.000 < 14.000] w=0.627 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)V33.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)P23.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)W212.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.626 # Constraint # added constraint: constraint((T0506)A128.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)N164.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.625 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.624 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.624 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.624 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.624 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.624 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)V119.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.623 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)E179.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.622 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.621 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.620 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.620 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)K208.CB) [> -10.000 = 7.000 < 14.000] w=0.620 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A236.CB) [> -10.000 = 7.000 < 14.000] w=0.620 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)V29.CB, (T0506)T90.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.619 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.618 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)V4.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)P23.CB, (T0506)A41.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)R143.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.617 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)A205.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.616 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)E82.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.615 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)G221.CA, (T0506)E237.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.614 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)G196.CA, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)S175.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.613 # Constraint # added constraint: constraint((T0506)D173.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.612 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)K132.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)K134.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L76.CB) [> -10.000 = 7.000 < 14.000] w=0.611 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.610 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.610 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.610 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)T83.CB) [> -10.000 = 7.000 < 14.000] w=0.610 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.610 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.610 # Constraint # added constraint: constraint((T0506)N80.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)E150.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)K96.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.609 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.608 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)T166.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)I9.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)G65.CA) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)A30.CB) [> -10.000 = 7.000 < 14.000] w=0.607 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.606 # Constraint # added constraint: constraint((T0506)G156.CA, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)V119.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.605 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.604 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L121.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)N164.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.603 # Constraint # added constraint: constraint((T0506)A124.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)T83.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)D84.CB, (T0506)R113.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.602 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.601 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.601 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.601 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.601 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.601 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.600 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.599 # Constraint # added constraint: constraint((T0506)S226.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.599 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.599 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)G65.CA) [> -10.000 = 7.000 < 14.000] w=0.599 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.599 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.599 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.598 # Constraint # added constraint: constraint((T0506)L230.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.597 # Constraint # added constraint: constraint((T0506)G115.CA, (T0506)R146.CB) [> -10.000 = 7.000 < 14.000] w=0.597 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.597 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.597 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.597 # Constraint # added constraint: constraint((T0506)R200.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.597 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)L76.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)R31.CB, (T0506)T44.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.596 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.595 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.595 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)G65.CA) [> -10.000 = 7.000 < 14.000] w=0.595 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.595 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.595 # Constraint # added constraint: constraint((T0506)K96.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.595 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.595 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.594 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.594 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.594 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.594 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.594 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.594 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.593 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.593 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.593 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.593 # Constraint # added constraint: constraint((T0506)D173.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.593 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.592 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.592 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.592 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.592 # Constraint # added constraint: constraint((T0506)A5.CB, (T0506)I16.CB) [> -10.000 = 7.000 < 14.000] w=0.592 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.592 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)A122.CB) [> -10.000 = 7.000 < 14.000] w=0.591 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.591 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.591 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.591 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.591 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.590 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.590 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.590 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.590 # Constraint # added constraint: constraint((T0506)G95.CA, (T0506)V119.CB) [> -10.000 = 7.000 < 14.000] w=0.590 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.590 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.590 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.589 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.588 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.588 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.588 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.588 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.588 # Constraint # added constraint: constraint((T0506)E62.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.588 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.587 # Constraint # added constraint: constraint((T0506)G73.CA, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.587 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.587 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.587 # Constraint # added constraint: constraint((T0506)V27.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.587 # Constraint # added constraint: constraint((T0506)D112.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.587 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.587 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)P23.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)L137.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.586 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)L45.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)S199.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)R104.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.585 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.584 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.584 # Constraint # added constraint: constraint((T0506)R143.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.584 # Constraint # added constraint: constraint((T0506)V203.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.584 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)N161.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.583 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)I214.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.582 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.581 # Constraint # added constraint: constraint((T0506)G95.CA, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.580 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.580 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.580 # Constraint # added constraint: constraint((T0506)V27.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.580 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.580 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)N80.CB) [> -10.000 = 7.000 < 14.000] w=0.580 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)D169.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)G210.CA, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)V4.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.579 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.578 # Constraint # added constraint: constraint((T0506)A198.CB, (T0506)Q244.CB) [> -10.000 = 7.000 < 14.000] w=0.578 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.578 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.578 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.577 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)V33.CB) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.576 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.575 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.575 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.575 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.575 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.575 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.575 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.575 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.574 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.574 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.573 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.573 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)S88.CB) [> -10.000 = 7.000 < 14.000] w=0.572 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.572 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.572 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.572 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.571 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.571 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.571 # Constraint # added constraint: constraint((T0506)A159.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.571 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.571 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.570 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.570 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L121.CB) [> -10.000 = 7.000 < 14.000] w=0.570 # Constraint # added constraint: constraint((T0506)I9.CB, (T0506)V33.CB) [> -10.000 = 7.000 < 14.000] w=0.570 # Constraint # added constraint: constraint((T0506)T36.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.570 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.570 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.569 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.569 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)L105.CB) [> -10.000 = 7.000 < 14.000] w=0.569 # Constraint # added constraint: constraint((T0506)I9.CB, (T0506)L45.CB) [> -10.000 = 7.000 < 14.000] w=0.568 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.568 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.568 # Constraint # added constraint: constraint((T0506)T36.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.568 # Constraint # added constraint: constraint((T0506)N80.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.568 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.568 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.567 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.567 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)K134.CB) [> -10.000 = 7.000 < 14.000] w=0.567 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.566 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.566 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.566 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.566 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.566 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)G97.CA, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.565 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)R86.CB) [> -10.000 = 7.000 < 14.000] w=0.564 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.564 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.564 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.564 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)A162.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)G73.CA, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)E118.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.563 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)R200.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.562 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)T209.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)G115.CA, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)T54.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.561 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)E118.CB) [> -10.000 = 7.000 < 14.000] w=0.560 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.560 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.560 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.560 # Constraint # added constraint: constraint((T0506)G13.CA, (T0506)V29.CB) [> -10.000 = 7.000 < 14.000] w=0.560 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.560 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.560 # Constraint # added constraint: constraint((T0506)A85.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.559 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)L42.CB) [> -10.000 = 7.000 < 14.000] w=0.559 # Constraint # added constraint: constraint((T0506)I9.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.559 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.559 # Constraint # added constraint: constraint((T0506)A26.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.559 # Constraint # added constraint: constraint((T0506)F69.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.559 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.559 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.558 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.558 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.558 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.558 # Constraint # added constraint: constraint((T0506)G157.CA, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.558 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.558 # Constraint # added constraint: constraint((T0506)D141.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.557 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.557 # Constraint # added constraint: constraint((T0506)R86.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.557 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.556 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.556 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.556 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.556 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.556 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.556 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.556 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.555 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.555 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.555 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.555 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.555 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.555 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.554 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.554 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.554 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.554 # Constraint # added constraint: constraint((T0506)G196.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.554 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)A236.CB) [> -10.000 = 7.000 < 14.000] w=0.553 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.553 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.553 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.553 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.553 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.553 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.552 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.552 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.552 # Constraint # added constraint: constraint((T0506)G50.CA, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.552 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.552 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.551 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.551 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)P103.CB, (T0506)D169.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)A184.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)N58.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)N161.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.550 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.549 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.549 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.549 # Constraint # added constraint: constraint((T0506)R232.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.549 # Constraint # added constraint: constraint((T0506)S138.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)T83.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)T57.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)G210.CA, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)R110.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)V4.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.548 # Constraint # added constraint: constraint((T0506)E197.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.547 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.547 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)K134.CB) [> -10.000 = 7.000 < 14.000] w=0.547 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.547 # Constraint # added constraint: constraint((T0506)D173.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.547 # Constraint # added constraint: constraint((T0506)V89.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.546 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.546 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.545 # Constraint # added constraint: constraint((T0506)P47.CB, (T0506)T75.CB) [> -10.000 = 7.000 < 14.000] w=0.545 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.545 # Constraint # added constraint: constraint((T0506)A193.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.545 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.545 # Constraint # added constraint: constraint((T0506)D220.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.545 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.545 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.544 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.544 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.544 # Constraint # added constraint: constraint((T0506)S49.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.544 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.544 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.544 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.544 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)P158.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)G157.CA, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.543 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)T57.CB, (T0506)T83.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)M181.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)V29.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.542 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.541 # Constraint # added constraint: constraint((T0506)P93.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.541 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.541 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.541 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.541 # Constraint # added constraint: constraint((T0506)P167.CB, (T0506)A182.CB) [> -10.000 = 7.000 < 14.000] w=0.541 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.540 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.540 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.540 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.540 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.540 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.540 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.540 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.539 # Constraint # added constraint: constraint((T0506)R190.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.539 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.539 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.539 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)G95.CA) [> -10.000 = 7.000 < 14.000] w=0.539 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.538 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.538 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.538 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.538 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.538 # Constraint # added constraint: constraint((T0506)D173.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.538 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.538 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.537 # Constraint # added constraint: constraint((T0506)L100.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.537 # Constraint # added constraint: constraint((T0506)A41.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.537 # Constraint # added constraint: constraint((T0506)I59.CB, (T0506)A128.CB) [> -10.000 = 7.000 < 14.000] w=0.537 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.537 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.536 # Constraint # added constraint: constraint((T0506)A159.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.536 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.536 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.536 # Constraint # added constraint: constraint((T0506)N161.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.536 # Constraint # added constraint: constraint((T0506)F68.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.535 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.535 # Constraint # added constraint: constraint((T0506)A30.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.535 # Constraint # added constraint: constraint((T0506)V152.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.535 # Constraint # added constraint: constraint((T0506)L201.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.535 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.535 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.534 # Constraint # added constraint: constraint((T0506)T149.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.534 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.534 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.534 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)A78.CB) [> -10.000 = 7.000 < 14.000] w=0.534 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.534 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.534 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.533 # Constraint # added constraint: constraint((T0506)F235.CB, (T0506)Q244.CB) [> -10.000 = 7.000 < 14.000] w=0.533 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.533 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.533 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.533 # Constraint # added constraint: constraint((T0506)P158.CB, (T0506)T215.CB) [> -10.000 = 7.000 < 14.000] w=0.533 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.532 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.532 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.532 # Constraint # added constraint: constraint((T0506)R38.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.532 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.531 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.531 # Constraint # added constraint: constraint((T0506)P140.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.531 # Constraint # added constraint: constraint((T0506)E187.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.531 # Constraint # added constraint: constraint((T0506)A159.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.531 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.531 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.530 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.530 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.530 # Constraint # added constraint: constraint((T0506)Q153.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.530 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.530 # Constraint # added constraint: constraint((T0506)V29.CB, (T0506)F70.CB) [> -10.000 = 7.000 < 14.000] w=0.530 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.530 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.529 # Constraint # added constraint: constraint((T0506)Y130.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.529 # Constraint # added constraint: constraint((T0506)R146.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.529 # Constraint # added constraint: constraint((T0506)R171.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.529 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.528 # Constraint # added constraint: constraint((T0506)V29.CB, (T0506)A92.CB) [> -10.000 = 7.000 < 14.000] w=0.528 # Constraint # added constraint: constraint((T0506)R143.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.528 # Constraint # added constraint: constraint((T0506)T36.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.528 # Constraint # added constraint: constraint((T0506)R104.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.528 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.528 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.527 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.527 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.527 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.526 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.526 # Constraint # added constraint: constraint((T0506)S186.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.526 # Constraint # added constraint: constraint((T0506)R125.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.526 # Constraint # added constraint: constraint((T0506)A159.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.526 # Constraint # added constraint: constraint((T0506)A85.CB, (T0506)G115.CA) [> -10.000 = 7.000 < 14.000] w=0.526 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)K132.CB) [> -10.000 = 7.000 < 14.000] w=0.526 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.525 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.525 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.525 # Constraint # added constraint: constraint((T0506)L105.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.525 # Constraint # added constraint: constraint((T0506)L139.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.525 # Constraint # added constraint: constraint((T0506)L74.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.524 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.524 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.524 # Constraint # added constraint: constraint((T0506)A85.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.524 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.524 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)G50.CA) [> -10.000 = 7.000 < 14.000] w=0.524 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.523 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.523 # Constraint # added constraint: constraint((T0506)L191.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.523 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.523 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.523 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.522 # Constraint # added constraint: constraint((T0506)R160.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.522 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.522 # Constraint # added constraint: constraint((T0506)N80.CB, (T0506)F94.CB) [> -10.000 = 7.000 < 14.000] w=0.522 # Constraint # added constraint: constraint((T0506)V4.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.522 # Constraint # added constraint: constraint((T0506)K96.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.521 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.521 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.521 # Constraint # added constraint: constraint((T0506)A78.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.521 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.521 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)Y53.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)L42.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)E197.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)A202.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)E118.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.520 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.519 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.519 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.519 # Constraint # added constraint: constraint((T0506)L174.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.519 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.519 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)F94.CB) [> -10.000 = 7.000 < 14.000] w=0.519 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.519 # Constraint # added constraint: constraint((T0506)A26.CB, (T0506)L91.CB) [> -10.000 = 7.000 < 14.000] w=0.518 # Constraint # added constraint: constraint((T0506)A56.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.518 # Constraint # added constraint: constraint((T0506)Y126.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.518 # Constraint # added constraint: constraint((T0506)T14.CB, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.518 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.518 # Constraint # added constraint: constraint((T0506)I194.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.518 # Constraint # added constraint: constraint((T0506)Y51.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)K195.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)I154.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)T44.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)L91.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)A177.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)E82.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)I114.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.517 # Constraint # added constraint: constraint((T0506)G60.CA, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.516 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.516 # Constraint # added constraint: constraint((T0506)L144.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.516 # Constraint # added constraint: constraint((T0506)A122.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.516 # Constraint # added constraint: constraint((T0506)Y136.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.516 # Constraint # added constraint: constraint((T0506)L135.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.516 # Constraint # added constraint: constraint((T0506)A43.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)L147.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)A188.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)D173.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)I165.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)G151.CA, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)T90.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.515 # Constraint # added constraint: constraint((T0506)G156.CA, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.514 # Constraint # added constraint: constraint((T0506)A92.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.514 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)A85.CB) [> -10.000 = 7.000 < 14.000] w=0.514 # Constraint # added constraint: constraint((T0506)L204.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.514 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.514 # Constraint # added constraint: constraint((T0506)A71.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.514 # Constraint # added constraint: constraint((T0506)T142.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.514 # Constraint # added constraint: constraint((T0506)I127.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.513 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.513 # Constraint # added constraint: constraint((T0506)L34.CB, (T0506)I114.CB) [> -10.000 = 7.000 < 14.000] w=0.513 # Constraint # added constraint: constraint((T0506)A133.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.513 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.513 # Constraint # added constraint: constraint((T0506)L180.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.512 # Constraint # added constraint: constraint((T0506)H35.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.512 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.512 # Constraint # added constraint: constraint((T0506)T36.CB, (T0506)L102.CB) [> -10.000 = 7.000 < 14.000] w=0.512 # Constraint # added constraint: constraint((T0506)R113.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.512 # Constraint # added constraint: constraint((T0506)F94.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.511 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.510 # Constraint # added constraint: constraint((T0506)G157.CA, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.510 # Constraint # added constraint: constraint((T0506)T75.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.510 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.510 # Constraint # added constraint: constraint((T0506)F70.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.510 # Constraint # added constraint: constraint((T0506)L170.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.509 # Constraint # added constraint: constraint((T0506)A85.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.509 # Constraint # added constraint: constraint((T0506)V33.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.509 # Constraint # added constraint: constraint((T0506)D46.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.508 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.508 # Constraint # added constraint: constraint((T0506)S226.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.508 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.508 # Constraint # added constraint: constraint((T0506)D218.CB, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.508 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.507 # Constraint # added constraint: constraint((T0506)H77.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.507 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.507 # Constraint # added constraint: constraint((T0506)P67.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)A72.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)V108.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)A177.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)T101.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)Y145.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)N161.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)D84.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)A159.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)P52.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.506 # Constraint # added constraint: constraint((T0506)T106.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.505 # Constraint # added constraint: constraint((T0506)L45.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.505 # Constraint # added constraint: constraint((T0506)M81.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.505 # Constraint # added constraint: constraint((T0506)A159.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.505 # Constraint # added constraint: constraint((T0506)A207.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)R238.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)I87.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)G109.CA, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)L107.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)A40.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)A111.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)I61.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)T39.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.504 # Constraint # added constraint: constraint((T0506)A99.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.502 # Constraint # added constraint: constraint((T0506)P18.CB, (T0506)S216.CB) [> -10.000 = 7.000 < 14.000] w=0.502 # Constraint # added constraint: constraint((T0506)R129.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.502 # Constraint # added constraint: constraint((T0506)V239.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.501 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.501 # Constraint # added constraint: constraint((T0506)G65.CA, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.501 # Constraint # added constraint: constraint((T0506)N155.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.500 # Constraint # added constraint: constraint((T0506)T55.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.500 # Constraint # added constraint: constraint((T0506)L102.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.500 # Constraint # added constraint: constraint((T0506)I123.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.500 # Constraint # added constraint: constraint((T0506)N192.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.500 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)I123.CB) [> -10.000 = 7.000 < 14.000] w=0.500 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.499 # Constraint # added constraint: bonus constraint((T0506)T142.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.499 # Constraint # added constraint: bonus constraint((T0506)A122.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.499 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.499 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)D46.CB) [> -10.000 = 7.000 < 14.000] w=0.499 # Constraint # added constraint: bonus constraint((T0506)R104.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.499 # Constraint # added constraint: bonus constraint((T0506)I59.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.498 # Constraint # added constraint: bonus constraint((T0506)T57.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.498 # Constraint # added constraint: bonus constraint((T0506)R31.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.498 # Constraint # added constraint: bonus constraint((T0506)L91.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.498 # Constraint # added constraint: bonus constraint((T0506)I165.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.498 # Constraint # added constraint: bonus constraint((T0506)L144.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.498 # Constraint # added constraint: bonus constraint((T0506)E179.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.497 # Constraint # added constraint: bonus constraint((T0506)L144.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.497 # Constraint # added constraint: bonus constraint((T0506)E187.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.496 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.496 # Constraint # added constraint: bonus constraint((T0506)A162.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.496 # Constraint # added constraint: bonus constraint((T0506)A41.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.496 # Constraint # added constraint: bonus constraint((T0506)T44.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.496 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.496 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.496 # Constraint # added constraint: bonus constraint((T0506)S199.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)S88.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)D84.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)E197.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)I123.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.495 # Constraint # added constraint: bonus constraint((T0506)L201.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)I123.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)L144.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)L180.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)T90.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)L170.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.494 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.493 # Constraint # added constraint: bonus constraint((T0506)V27.CB, (T0506)R110.CB) [> -10.000 = 7.000 < 14.000] w=0.493 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.493 # Constraint # added constraint: bonus constraint((T0506)Y130.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.493 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.493 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.492 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.492 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.492 # Constraint # added constraint: bonus constraint((T0506)R129.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.492 # Constraint # added constraint: bonus constraint((T0506)R171.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.492 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.491 # Constraint # added constraint: bonus constraint((T0506)I165.CB, (T0506)S175.CB) [> -10.000 = 7.000 < 14.000] w=0.491 # Constraint # added constraint: bonus constraint((T0506)R38.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.491 # Constraint # added constraint: bonus constraint((T0506)A72.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)D112.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)D84.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)I165.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)T142.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)A43.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)S199.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.490 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.489 # Constraint # added constraint: bonus constraint((T0506)A122.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.489 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.489 # Constraint # added constraint: bonus constraint((T0506)A177.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.489 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.488 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.488 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.488 # Constraint # added constraint: bonus constraint((T0506)V152.CB, (T0506)T172.CB) [> -10.000 = 7.000 < 14.000] w=0.488 # Constraint # added constraint: bonus constraint((T0506)I123.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)E118.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)H35.CB, (T0506)A72.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)E187.CB, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)A184.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)R232.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)G157.CA, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)L91.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.487 # Constraint # added constraint: bonus constraint((T0506)Y51.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.486 # Constraint # added constraint: bonus constraint((T0506)L201.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.486 # Constraint # added constraint: bonus constraint((T0506)D84.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.486 # Constraint # added constraint: bonus constraint((T0506)Q153.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.486 # Constraint # added constraint: bonus constraint((T0506)E118.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.485 # Constraint # added constraint: bonus constraint((T0506)T55.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.485 # Constraint # added constraint: bonus constraint((T0506)A40.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.485 # Constraint # added constraint: bonus constraint((T0506)F69.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.484 # Constraint # added constraint: bonus constraint((T0506)T44.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.484 # Constraint # added constraint: bonus constraint((T0506)T57.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.484 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.484 # Constraint # added constraint: bonus constraint((T0506)L42.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.484 # Constraint # added constraint: bonus constraint((T0506)N58.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.484 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.483 # Constraint # added constraint: bonus constraint((T0506)P167.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.482 # Constraint # added constraint: bonus constraint((T0506)L170.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.482 # Constraint # added constraint: bonus constraint((T0506)Q153.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.482 # Constraint # added constraint: bonus constraint((T0506)A40.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.482 # Constraint # added constraint: bonus constraint((T0506)R38.CB, (T0506)F94.CB) [> -10.000 = 7.000 < 14.000] w=0.482 # Constraint # added constraint: bonus constraint((T0506)L180.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.482 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.481 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.481 # Constraint # added constraint: bonus constraint((T0506)F69.CB, (T0506)A128.CB) [> -10.000 = 7.000 < 14.000] w=0.481 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.481 # Constraint # added constraint: bonus constraint((T0506)A111.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.481 # Constraint # added constraint: bonus constraint((T0506)S186.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.481 # Constraint # added constraint: bonus constraint((T0506)L204.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.480 # Constraint # added constraint: bonus constraint((T0506)A162.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.480 # Constraint # added constraint: bonus constraint((T0506)F69.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.480 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)A183.CB) [> -10.000 = 7.000 < 14.000] w=0.480 # Constraint # added constraint: bonus constraint((T0506)E25.CB, (T0506)T66.CB) [> -10.000 = 7.000 < 14.000] w=0.479 # Constraint # added constraint: bonus constraint((T0506)H35.CB, (T0506)A71.CB) [> -10.000 = 7.000 < 14.000] w=0.479 # Constraint # added constraint: bonus constraint((T0506)I123.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.479 # Constraint # added constraint: bonus constraint((T0506)A193.CB, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.479 # Constraint # added constraint: bonus constraint((T0506)S163.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.479 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.479 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)V27.CB, (T0506)G151.CA) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)V119.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)E62.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)N80.CB) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)I9.CB, (T0506)L42.CB) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)K96.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.478 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)G115.CA) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)P93.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)L121.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)N58.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)T55.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.477 # Constraint # added constraint: bonus constraint((T0506)A111.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.476 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.476 # Constraint # added constraint: bonus constraint((T0506)G157.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.476 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.476 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.476 # Constraint # added constraint: bonus constraint((T0506)S175.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.476 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.476 # Constraint # added constraint: bonus constraint((T0506)A40.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.475 # Constraint # added constraint: bonus constraint((T0506)P140.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.475 # Constraint # added constraint: bonus constraint((T0506)M181.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.475 # Constraint # added constraint: bonus constraint((T0506)G97.CA, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.475 # Constraint # added constraint: bonus constraint((T0506)S138.CB, (T0506)A162.CB) [> -10.000 = 7.000 < 14.000] w=0.475 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)Q244.CB) [> -10.000 = 7.000 < 14.000] w=0.475 # Constraint # added constraint: bonus constraint((T0506)T90.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)S88.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)V27.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)P7.CB, (T0506)P52.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)P158.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.474 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)G157.CA, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)V239.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)A198.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)R104.CB, (T0506)K208.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)H35.CB, (T0506)I59.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)S175.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)M181.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.473 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.472 # Constraint # added constraint: bonus constraint((T0506)R232.CB, (T0506)K247.CB) [> -10.000 = 7.000 < 14.000] w=0.472 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.472 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.472 # Constraint # added constraint: bonus constraint((T0506)E187.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.472 # Constraint # added constraint: bonus constraint((T0506)V89.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.472 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)A30.CB) [> -10.000 = 7.000 < 14.000] w=0.471 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.471 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.471 # Constraint # added constraint: bonus constraint((T0506)R38.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.470 # Constraint # added constraint: bonus constraint((T0506)L42.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.470 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.470 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)E118.CB) [> -10.000 = 7.000 < 14.000] w=0.469 # Constraint # added constraint: bonus constraint((T0506)E118.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.469 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.469 # Constraint # added constraint: bonus constraint((T0506)A122.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.469 # Constraint # added constraint: bonus constraint((T0506)L170.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.469 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.469 # Constraint # added constraint: bonus constraint((T0506)Q153.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.469 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.468 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.468 # Constraint # added constraint: bonus constraint((T0506)A20.CB, (T0506)P93.CB) [> -10.000 = 7.000 < 14.000] w=0.468 # Constraint # added constraint: bonus constraint((T0506)A41.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.467 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.467 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.467 # Constraint # added constraint: bonus constraint((T0506)A71.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.467 # Constraint # added constraint: bonus constraint((T0506)L180.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.467 # Constraint # added constraint: bonus constraint((T0506)A43.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.467 # Constraint # added constraint: bonus constraint((T0506)L102.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.467 # Constraint # added constraint: bonus constraint((T0506)E62.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)Y51.CB, (T0506)N164.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)A122.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)P47.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)P47.CB, (T0506)K96.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)I165.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)F68.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)D112.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.466 # Constraint # added constraint: bonus constraint((T0506)R38.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)L180.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)L102.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)K132.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.465 # Constraint # added constraint: bonus constraint((T0506)T54.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.464 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.464 # Constraint # added constraint: bonus constraint((T0506)G95.CA, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.464 # Constraint # added constraint: bonus constraint((T0506)L180.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.464 # Constraint # added constraint: bonus constraint((T0506)T57.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.464 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.464 # Constraint # added constraint: bonus constraint((T0506)S175.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)D98.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)M181.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)R104.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)T142.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)A111.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)A111.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.463 # Constraint # added constraint: bonus constraint((T0506)R143.CB, (T0506)E237.CB) [> -10.000 = 7.000 < 14.000] w=0.462 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.462 # Constraint # added constraint: bonus constraint((T0506)R200.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.462 # Constraint # added constraint: bonus constraint((T0506)I59.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.462 # Constraint # added constraint: bonus constraint((T0506)L139.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.462 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.462 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)T166.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)S19.CB, (T0506)V108.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)A122.CB, (T0506)S163.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)A111.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)L100.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.461 # Constraint # added constraint: bonus constraint((T0506)R129.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.460 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.460 # Constraint # added constraint: bonus constraint((T0506)E185.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.460 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.460 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.460 # Constraint # added constraint: bonus constraint((T0506)A122.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)F235.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)P158.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)E62.CB, (T0506)L100.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)S216.CB, (T0506)K247.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)G97.CA) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)T101.CB, (T0506)Y126.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)Y53.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.459 # Constraint # added constraint: bonus constraint((T0506)T44.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)T149.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)S199.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)Y145.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)L100.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)I123.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.458 # Constraint # added constraint: bonus constraint((T0506)T44.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)A122.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)R146.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.457 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.456 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)D169.CB) [> -10.000 = 7.000 < 14.000] w=0.456 # Constraint # added constraint: bonus constraint((T0506)L76.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.456 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.456 # Constraint # added constraint: bonus constraint((T0506)A133.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.456 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.456 # Constraint # added constraint: bonus constraint((T0506)T39.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.456 # Constraint # added constraint: bonus constraint((T0506)N58.CB, (T0506)G97.CA) [> -10.000 = 7.000 < 14.000] w=0.455 # Constraint # added constraint: bonus constraint((T0506)T39.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.455 # Constraint # added constraint: bonus constraint((T0506)G157.CA, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)L91.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)I154.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)A207.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)P93.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)A188.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)G221.CA, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.454 # Constraint # added constraint: bonus constraint((T0506)A205.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)E150.CB, (T0506)S175.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)D98.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)I194.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)Y53.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)F68.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.453 # Constraint # added constraint: bonus constraint((T0506)S19.CB, (T0506)R143.CB) [> -10.000 = 7.000 < 14.000] w=0.452 # Constraint # added constraint: bonus constraint((T0506)S163.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.452 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.452 # Constraint # added constraint: bonus constraint((T0506)R31.CB, (T0506)L107.CB) [> -10.000 = 7.000 < 14.000] w=0.452 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.452 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)T83.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)L135.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.451 # Constraint # added constraint: bonus constraint((T0506)T209.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.450 # Constraint # added constraint: bonus constraint((T0506)L121.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.450 # Constraint # added constraint: bonus constraint((T0506)A5.CB, (T0506)A22.CB) [> -10.000 = 7.000 < 14.000] w=0.450 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.450 # Constraint # added constraint: bonus constraint((T0506)P219.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.450 # Constraint # added constraint: bonus constraint((T0506)L100.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.450 # Constraint # added constraint: bonus constraint((T0506)R129.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.450 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)L201.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)T66.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)L76.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)L191.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)Q153.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)L121.CB, (T0506)L204.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)Y53.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.449 # Constraint # added constraint: bonus constraint((T0506)K96.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)F69.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)A43.CB, (T0506)G97.CA) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)N164.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)P93.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)R38.CB, (T0506)R125.CB) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)G97.CA) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)L102.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.448 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.447 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.447 # Constraint # added constraint: bonus constraint((T0506)A111.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.447 # Constraint # added constraint: bonus constraint((T0506)P131.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.446 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.446 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.446 # Constraint # added constraint: bonus constraint((T0506)P116.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.446 # Constraint # added constraint: bonus constraint((T0506)E150.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.446 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.445 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.445 # Constraint # added constraint: bonus constraint((T0506)Y53.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.445 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)V29.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)I165.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)D98.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)Q153.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.444 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)R211.CB) [> -10.000 = 7.000 < 14.000] w=0.443 # Constraint # added constraint: bonus constraint((T0506)P158.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.443 # Constraint # added constraint: bonus constraint((T0506)V152.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.443 # Constraint # added constraint: bonus constraint((T0506)A133.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.443 # Constraint # added constraint: bonus constraint((T0506)G157.CA, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.443 # Constraint # added constraint: bonus constraint((T0506)A72.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.442 # Constraint # added constraint: bonus constraint((T0506)L170.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.442 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.442 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.442 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.442 # Constraint # added constraint: bonus constraint((T0506)V203.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.441 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.441 # Constraint # added constraint: bonus constraint((T0506)H35.CB, (T0506)R129.CB) [> -10.000 = 7.000 < 14.000] w=0.441 # Constraint # added constraint: bonus constraint((T0506)W212.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.441 # Constraint # added constraint: bonus constraint((T0506)I123.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.441 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.441 # Constraint # added constraint: bonus constraint((T0506)H35.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.441 # Constraint # added constraint: bonus constraint((T0506)L139.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)A198.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)A78.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)P67.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)P120.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)L230.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.440 # Constraint # added constraint: bonus constraint((T0506)R38.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.439 # Constraint # added constraint: bonus constraint((T0506)V27.CB, (T0506)I87.CB) [> -10.000 = 7.000 < 14.000] w=0.439 # Constraint # added constraint: bonus constraint((T0506)R160.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.439 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.439 # Constraint # added constraint: bonus constraint((T0506)G196.CA, (T0506)A227.CB) [> -10.000 = 7.000 < 14.000] w=0.439 # Constraint # added constraint: bonus constraint((T0506)L107.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.439 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)L191.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)D98.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)L191.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)R160.CB, (T0506)T172.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)S228.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)G21.CA, (T0506)K213.CB) [> -10.000 = 7.000 < 14.000] w=0.438 # Constraint # added constraint: bonus constraint((T0506)P63.CB, (T0506)E150.CB) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)A56.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)D218.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)V29.CB, (T0506)N80.CB) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)L139.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.437 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.436 # Constraint # added constraint: bonus constraint((T0506)P103.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.436 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)K134.CB) [> -10.000 = 7.000 < 14.000] w=0.436 # Constraint # added constraint: bonus constraint((T0506)S37.CB, (T0506)L74.CB) [> -10.000 = 7.000 < 14.000] w=0.436 # Constraint # added constraint: bonus constraint((T0506)K132.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.436 # Constraint # added constraint: bonus constraint((T0506)A85.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.436 # Constraint # added constraint: bonus constraint((T0506)P103.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.436 # Constraint # added constraint: bonus constraint((T0506)G151.CA, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.435 # Constraint # added constraint: bonus constraint((T0506)L76.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.435 # Constraint # added constraint: bonus constraint((T0506)F68.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.435 # Constraint # added constraint: bonus constraint((T0506)S37.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.435 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.435 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.435 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.435 # Constraint # added constraint: bonus constraint((T0506)A72.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)R125.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)T142.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)F68.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)A133.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)L204.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.434 # Constraint # added constraint: bonus constraint((T0506)D98.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.433 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.433 # Constraint # added constraint: bonus constraint((T0506)A159.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.433 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.433 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.433 # Constraint # added constraint: bonus constraint((T0506)T101.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.433 # Constraint # added constraint: bonus constraint((T0506)R38.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)F68.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)D218.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)A205.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)V203.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)Y145.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)A41.CB, (T0506)P167.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)S163.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)L76.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)L42.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.432 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)S199.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)T83.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)R86.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)R129.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)Y51.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)L137.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)L201.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.431 # Constraint # added constraint: bonus constraint((T0506)A78.CB, (T0506)L147.CB) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)L201.CB) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)L91.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)A162.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)T44.CB, (T0506)P158.CB) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)T57.CB, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)G73.CA, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.430 # Constraint # added constraint: bonus constraint((T0506)N80.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)R79.CB, (T0506)Q153.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)P158.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)R211.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)I154.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)D223.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)F68.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)S199.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.429 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)R160.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)L180.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)I87.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)R104.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)T55.CB, (T0506)A159.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)I59.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)G221.CA, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)A205.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.428 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)R79.CB) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)G157.CA, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)K132.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)I165.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)I154.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.427 # Constraint # added constraint: bonus constraint((T0506)G97.CA, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)A128.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)R200.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)F69.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)D84.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)L170.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)H77.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)T14.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)T166.CB) [> -10.000 = 7.000 < 14.000] w=0.426 # Constraint # added constraint: bonus constraint((T0506)A184.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)R232.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)L42.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)A43.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)I165.CB) [> -10.000 = 7.000 < 14.000] w=0.425 # Constraint # added constraint: bonus constraint((T0506)L102.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.424 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.424 # Constraint # added constraint: bonus constraint((T0506)T106.CB, (T0506)Y130.CB) [> -10.000 = 7.000 < 14.000] w=0.424 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.424 # Constraint # added constraint: bonus constraint((T0506)A159.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.424 # Constraint # added constraint: bonus constraint((T0506)V152.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.424 # Constraint # added constraint: bonus constraint((T0506)E187.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.423 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)K195.CB) [> -10.000 = 7.000 < 14.000] w=0.423 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.423 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.423 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)G156.CA) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)S19.CB, (T0506)L135.CB) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)L107.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)S37.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)D98.CB) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)T14.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.422 # Constraint # added constraint: bonus constraint((T0506)A198.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)L121.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)L100.CB, (T0506)L230.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)Q244.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)A5.CB, (T0506)F68.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)Y53.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)V8.CB, (T0506)P93.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.421 # Constraint # added constraint: bonus constraint((T0506)N161.CB, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.420 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.420 # Constraint # added constraint: bonus constraint((T0506)P67.CB, (T0506)D141.CB) [> -10.000 = 7.000 < 14.000] w=0.420 # Constraint # added constraint: bonus constraint((T0506)D84.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.420 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.420 # Constraint # added constraint: bonus constraint((T0506)R86.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.420 # Constraint # added constraint: bonus constraint((T0506)T142.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.420 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.419 # Constraint # added constraint: bonus constraint((T0506)L105.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.419 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.419 # Constraint # added constraint: bonus constraint((T0506)A78.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.419 # Constraint # added constraint: bonus constraint((T0506)F24.CB, (T0506)P219.CB) [> -10.000 = 7.000 < 14.000] w=0.419 # Constraint # added constraint: bonus constraint((T0506)G73.CA, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.419 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.418 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)I222.CB) [> -10.000 = 7.000 < 14.000] w=0.418 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.418 # Constraint # added constraint: bonus constraint((T0506)L230.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.418 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.418 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.418 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)F69.CB) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)Y130.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)A205.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)P93.CB, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)P67.CB, (T0506)N192.CB) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)A198.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)A188.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.417 # Constraint # added constraint: bonus constraint((T0506)R125.CB, (T0506)R160.CB) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)G210.CA, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)D98.CB, (T0506)Y136.CB) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)G109.CA) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)P103.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)A72.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.416 # Constraint # added constraint: bonus constraint((T0506)I87.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)K96.CB, (T0506)L139.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)G50.CA) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)S226.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)R86.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)L100.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)I154.CB, (T0506)A250.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.415 # Constraint # added constraint: bonus constraint((T0506)G50.CA, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.414 # Constraint # added constraint: bonus constraint((T0506)T106.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.414 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.414 # Constraint # added constraint: bonus constraint((T0506)G13.CA, (T0506)A56.CB) [> -10.000 = 7.000 < 14.000] w=0.414 # Constraint # added constraint: bonus constraint((T0506)I194.CB, (T0506)G206.CA) [> -10.000 = 7.000 < 14.000] w=0.414 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.414 # Constraint # added constraint: bonus constraint((T0506)L139.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.414 # Constraint # added constraint: bonus constraint((T0506)L100.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.413 # Constraint # added constraint: bonus constraint((T0506)A202.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.413 # Constraint # added constraint: bonus constraint((T0506)T66.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.413 # Constraint # added constraint: bonus constraint((T0506)E187.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.413 # Constraint # added constraint: bonus constraint((T0506)E25.CB, (T0506)N58.CB) [> -10.000 = 7.000 < 14.000] w=0.413 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.413 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)M181.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)P158.CB, (T0506)G210.CA) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)A133.CB, (T0506)A184.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)A43.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)G210.CA, (T0506)F245.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)L135.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)Y145.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.412 # Constraint # added constraint: bonus constraint((T0506)L174.CB, (T0506)D223.CB) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)A5.CB, (T0506)G21.CA) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)I194.CB) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)A99.CB, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)D173.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)A159.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)G60.CA, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)R129.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.411 # Constraint # added constraint: bonus constraint((T0506)G157.CA, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)D220.CB, (T0506)Q244.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)T55.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)R200.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)A207.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)A128.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)T209.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)L139.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.410 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)V152.CB) [> -10.000 = 7.000 < 14.000] w=0.409 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.409 # Constraint # added constraint: bonus constraint((T0506)K96.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.409 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)W212.CB) [> -10.000 = 7.000 < 14.000] w=0.409 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)E62.CB) [> -10.000 = 7.000 < 14.000] w=0.409 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)A231.CB) [> -10.000 = 7.000 < 14.000] w=0.409 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.409 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)R113.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)V33.CB, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)L74.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)F94.CB, (T0506)R171.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)R125.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)I9.CB, (T0506)T149.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)A5.CB, (T0506)I214.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)R104.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)R160.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)G221.CA) [> -10.000 = 7.000 < 14.000] w=0.408 # Constraint # added constraint: bonus constraint((T0506)A71.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)A198.CB, (T0506)T241.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)H35.CB, (T0506)H77.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)S19.CB, (T0506)A40.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)A202.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)Y136.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)L121.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)A133.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)A78.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.407 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)N155.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)R129.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)L201.CB, (T0506)R238.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)L42.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)M181.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)T90.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)A177.CB, (T0506)A225.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)L144.CB, (T0506)L242.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)D112.CB, (T0506)A128.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)T44.CB, (T0506)Q244.CB) [> -10.000 = 7.000 < 14.000] w=0.406 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)P18.CB, (T0506)G65.CA) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)G65.CA, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)A30.CB, (T0506)T142.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)L107.CB, (T0506)D173.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)A26.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)V89.CB, (T0506)E187.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)R104.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)L100.CB, (T0506)S138.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)D218.CB, (T0506)Q244.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)T14.CB, (T0506)L144.CB) [> -10.000 = 7.000 < 14.000] w=0.405 # Constraint # added constraint: bonus constraint((T0506)A162.CB, (T0506)L252.CB) [> -10.000 = 7.000 < 14.000] w=0.404 # Constraint # added constraint: bonus constraint((T0506)T14.CB, (T0506)A111.CB) [> -10.000 = 7.000 < 14.000] w=0.404 # Constraint # added constraint: bonus constraint((T0506)V29.CB, (T0506)A133.CB) [> -10.000 = 7.000 < 14.000] w=0.404 # Constraint # added constraint: bonus constraint((T0506)D84.CB, (T0506)P103.CB) [> -10.000 = 7.000 < 14.000] w=0.404 # Constraint # added constraint: bonus constraint((T0506)G115.CA, (T0506)E197.CB) [> -10.000 = 7.000 < 14.000] w=0.404 # Constraint # added constraint: bonus constraint((T0506)L107.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.404 # Constraint # added constraint: bonus constraint((T0506)P52.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)N155.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)S199.CB, (T0506)Q251.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)G156.CA, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)F69.CB, (T0506)L180.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)I61.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)I114.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)G95.CA, (T0506)K134.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)A40.CB, (T0506)D84.CB) [> -10.000 = 7.000 < 14.000] w=0.403 # Constraint # added constraint: bonus constraint((T0506)L139.CB, (T0506)D220.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)A56.CB, (T0506)A188.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)G115.CA, (T0506)I154.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)T75.CB, (T0506)E246.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)P47.CB, (T0506)G157.CA) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)T172.CB, (T0506)A198.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)Y126.CB, (T0506)L174.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)V119.CB, (T0506)L224.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)A26.CB, (T0506)V89.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)S37.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)L137.CB, (T0506)L233.CB) [> -10.000 = 7.000 < 14.000] w=0.402 # Constraint # added constraint: bonus constraint((T0506)L45.CB, (T0506)M81.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)R238.CB, (T0506)K247.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)F235.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)P103.CB, (T0506)D218.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)P140.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)L147.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)G109.CA, (T0506)A248.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)I127.CB, (T0506)I217.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)L201.CB, (T0506)R232.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)E197.CB, (T0506)S228.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)F70.CB, (T0506)R190.CB) [> -10.000 = 7.000 < 14.000] w=0.401 # Constraint # added constraint: bonus constraint((T0506)P158.CB, (T0506)L170.CB) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)S163.CB, (T0506)L191.CB) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)M81.CB, (T0506)A99.CB) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)P158.CB, (T0506)G196.CA) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)I127.CB) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)N80.CB, (T0506)T101.CB) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)Q153.CB, (T0506)G176.CA) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)K195.CB, (T0506)V239.CB) [> -10.000 = 7.000 < 14.000] w=0.400 # Constraint # added constraint: bonus constraint((T0506)L34.CB, (T0506)L249.CB) [> -10.000 = 7.000 < 14.000] w=0.400 # command:CPU_time= 37.728 sec, elapsed time= 38.930 sec. # command:# Making generic fragment library # fragment library contains # type length num_fragments num_indexes_used # n-terminus 1 1957 20 (100.000%) # n-terminus 2 1932 333 (83.250%) # middle 1 481122 20 (100.000%) # middle 2 474896 400 (100.000%) # middle 3 468898 7988 (99.850%) # middle 4 463038 120397 (75.248%) # c-terminus 1 1914 20 (100.000%) # c-terminus 2 1887 372 (93.000%) # ss-bonds 1042 # command:CPU_time= 47.432 sec, elapsed time= 48.639 sec. # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:Warning: Couldn't open file Template.atoms or Template.atoms.gz for input Trying Template.atoms Error: Couldn't open file Template.atoms or Template.atoms.gz for input # command:# reading script from file T0506.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2arzA/T0506-2arzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2arzA expands to /projects/compbio/data/pdb/2arz.pdb.gz 2arzA:Skipped atom 565, because occupancy 0.5 <= existing 0.500 in 2arzA Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 2arzA Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 2arzA # T0506 read from 2arzA/T0506-2arzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2arzA read from 2arzA/T0506-2arzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2arzA to template set # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS # choosing archetypes in rotamer library T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEEL 2arzA 150 :PLANPF T0506 181 :MAAAESEATRLNAIKGEASRLAV 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 12 number of extra gaps= 6 total=12 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_70948868.pdb -s /var/tmp/to_scwrl_70948868.seq -o /var/tmp/from_scwrl_70948868.pdb > /var/tmp/scwrl_70948868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70948868.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2iabA/T0506-2iabA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2iabA expands to /projects/compbio/data/pdb/2iab.pdb.gz 2iabA:Skipped atom 61, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 63, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 73, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 75, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 77, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 2iabA Skipped atom 643, because occupancy 0.500 <= existing 0.500 in 2iabA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0506 read from 2iabA/T0506-2iabA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2iabA read from 2iabA/T0506-2iabA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2iabA to template set # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIG 2iabA 81 :DLVLVEGTALPLE T0506 116 :PDEVPLAIARY 2iabA 99 :DGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASDL 2iabA 139 :LSGRELMRDGEW Number of specific fragments extracted= 10 number of extra gaps= 1 total=22 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2049279418.pdb -s /var/tmp/to_scwrl_2049279418.seq -o /var/tmp/from_scwrl_2049279418.pdb > /var/tmp/scwrl_2049279418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2049279418.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ig6A/T0506-2ig6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ig6A expands to /projects/compbio/data/pdb/2ig6.pdb.gz 2ig6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2ig6A Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 2ig6A Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2ig6A Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 2ig6A Skipped atom 507, because occupancy 0.300 <= existing 0.700 in 2ig6A Skipped atom 511, because occupancy 0.300 <= existing 0.700 in 2ig6A Skipped atom 513, because occupancy 0.300 <= existing 0.700 in 2ig6A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 928, because occupancy 0.500 <= existing 0.500 in 2ig6A Skipped atom 932, because occupancy 0.500 <= existing 0.500 in 2ig6A Skipped atom 934, because occupancy 0.500 <= existing 0.500 in 2ig6A Skipped atom 936, because occupancy 0.500 <= existing 0.500 in 2ig6A # T0506 read from 2ig6A/T0506-2ig6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ig6A read from 2ig6A/T0506-2ig6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2ig6A to template set # found chain 2ig6A in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2ig6A)H-11 T0506 10 :TPRG 2ig6A -10 :HHHH T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTAT 2ig6A 21 :GDQPRVRPF T0506 58 :NIGIE 2ig6A 31 :AVFEY T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 36 :EGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASN 2ig6A 120 :CSFKGENET Number of specific fragments extracted= 9 number of extra gaps= 0 total=31 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1839374556.pdb -s /var/tmp/to_scwrl_1839374556.seq -o /var/tmp/from_scwrl_1839374556.pdb > /var/tmp/scwrl_1839374556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1839374556.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2re7A/T0506-2re7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2re7A expands to /projects/compbio/data/pdb/2re7.pdb.gz 2re7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0506 read from 2re7A/T0506-2re7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2re7A read from 2re7A/T0506-2re7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2re7A to template set # found chain 2re7A in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IE 2re7A 41 :VN T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 44 :DNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIA 2re7A 94 :AKLDELWS T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=40 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1946818335.pdb -s /var/tmp/to_scwrl_1946818335.seq -o /var/tmp/from_scwrl_1946818335.pdb > /var/tmp/scwrl_1946818335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946818335.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2hhzA/T0506-2hhzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2hhzA expands to /projects/compbio/data/pdb/2hhz.pdb.gz 2hhzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 2hhzA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 2hhzA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 2hhzA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 2hhzA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 510, because occupancy 0.500 <= existing 0.500 in 2hhzA Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 2hhzA Skipped atom 516, because occupancy 0.500 <= existing 0.500 in 2hhzA Skipped atom 518, because occupancy 0.500 <= existing 0.500 in 2hhzA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0506 read from 2hhzA/T0506-2hhzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2hhzA read from 2hhzA/T0506-2hhzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2hhzA to template set # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)A236 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTAT 2hhzA 23 :EYGNPHARHA T0506 58 :NIGIEPD 2hhzA 34 :ITAANEE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2hhzA 41 :GIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGP 2hhzA 77 :VRVEGTARPVEN T0506 121 :LAIARYIARYPKAKLYL 2hhzA 89 :DYLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 229 :DLARLWF 2hhzA 132 :HKYIFSI Number of specific fragments extracted= 10 number of extra gaps= 1 total=50 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2052490463.pdb -s /var/tmp/to_scwrl_2052490463.seq -o /var/tmp/from_scwrl_2052490463.pdb > /var/tmp/scwrl_2052490463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2052490463.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2i51A/T0506-2i51A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2i51A expands to /projects/compbio/data/pdb/2i51.pdb.gz 2i51A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 14, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 20, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 73, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 77, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 79, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 81, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 83, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 366, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 410, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 2i51A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2i51A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2i51A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 2i51A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 784, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 786, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 788, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 790, because occupancy 0.500 <= existing 0.500 in 2i51A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1410, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1414, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1416, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1418, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1420, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1422, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1424, because occupancy 0.500 <= existing 0.500 in 2i51A Skipped atom 1426, because occupancy 0.500 <= existing 0.500 in 2i51A # T0506 read from 2i51A/T0506-2i51A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2i51A read from 2i51A/T0506-2i51A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2i51A to template set # found chain 2i51A in template set T0506 15 :KIEP 2i51A 2 :SLAP T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPD 2i51A 47 :FLED T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 52 :NQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRI 2i51A 85 :EQFRMAGDLTLI T0506 115 :GP 2i51A 99 :DD T0506 117 :DEVPLAIARYIA 2i51A 104 :DLQPARIAMWQE T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 227 :ASDLA 2i51A 173 :PQNRW Number of specific fragments extracted= 12 number of extra gaps= 0 total=62 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1188487760.pdb -s /var/tmp/to_scwrl_1188487760.seq -o /var/tmp/from_scwrl_1188487760.pdb > /var/tmp/scwrl_1188487760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188487760.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2qeaA/T0506-2qeaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2qeaA expands to /projects/compbio/data/pdb/2qea.pdb.gz 2qeaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 2qeaA Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 2qeaA Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 2qeaA Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 2qeaA Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 2qeaA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 2qeaA Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 2qeaA Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 2qeaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0506 read from 2qeaA/T0506-2qeaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2qeaA read from 2qeaA/T0506-2qeaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2qeaA to template set # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATL 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIK T0506 48 :VSG 2qeaA 24 :GQG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPL 2qeaA 90 :EALDE T0506 125 :RYIARYPKA 2qeaA 99 :VADAWFDGG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2qeaA 108 :QHDPDVCLLKFTPASGEISITEGG T0506 178 :EELMAAAESEAT 2qeaA 132 :GARFLYEIAKAH Number of specific fragments extracted= 10 number of extra gaps= 0 total=72 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_369791169.pdb -s /var/tmp/to_scwrl_369791169.seq -o /var/tmp/from_scwrl_369791169.pdb > /var/tmp/scwrl_369791169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_369791169.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2htdA/T0506-2htdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2htdA expands to /projects/compbio/data/pdb/2htd.pdb.gz 2htdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 91, because occupancy 0.300 <= existing 0.700 in 2htdA Skipped atom 95, because occupancy 0.300 <= existing 0.700 in 2htdA Skipped atom 97, because occupancy 0.300 <= existing 0.700 in 2htdA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 369, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 373, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 375, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 377, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 379, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 509, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 513, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 515, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 517, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 519, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 521, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 523, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 525, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 606, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 610, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 612, because occupancy 0.400 <= existing 0.600 in 2htdA Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 650, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 683, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 901, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 905, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 907, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 909, because occupancy 0.500 <= existing 0.500 in 2htdA Skipped atom 911, because occupancy 0.500 <= existing 0.500 in 2htdA # T0506 read from 2htdA/T0506-2htdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2htdA read from 2htdA/T0506-2htdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2htdA to template set # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVRVARD 2htdA 2 :KKLNTNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTAT 2htdA 29 :ADGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 40 :SMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPD 2htdA 80 :TAVRVLATAEVHEDD T0506 120 :PLAIA 2htdA 95 :DYAKK T0506 126 :YIAR 2htdA 100 :VLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=81 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_854342045.pdb -s /var/tmp/to_scwrl_854342045.seq -o /var/tmp/from_scwrl_854342045.pdb > /var/tmp/scwrl_854342045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854342045.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ou5A/T0506-2ou5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ou5A expands to /projects/compbio/data/pdb/2ou5.pdb.gz 2ou5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 7, because occupancy 0.500 <= existing 0.500 in 2ou5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 2ou5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 13, because occupancy 0.500 <= existing 0.500 in 2ou5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 15, because occupancy 0.370 <= existing 0.380 in 2ou5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 2ou5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1058, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1062, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1064, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1066, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1282, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1284, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 2ou5A Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 2ou5A # T0506 read from 2ou5A/T0506-2ou5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ou5A read from 2ou5A/T0506-2ou5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2ou5A to template set # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 24 :FEAVRVARDVLHT 2ou5A 7 :TGLLDTVWQQFGR T0506 37 :SRTAALATLD 2ou5A 28 :ARHPTLATIG T0506 48 :VSG 2ou5A 38 :TDG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEPDGT 2ou5A 51 :ASHAEA T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2ou5A 58 :LEFHTDAASPKVAHIRRDARVAIHI T0506 93 :PFGK 2ou5A 83 :WIPK T0506 101 :TL 2ou5A 87 :AS T0506 105 :LTLVGRADRI 2ou5A 91 :VRAKAIAKIL T0506 115 :GPD 2ou5A 103 :DPN T0506 126 :YIARYPK 2ou5A 106 :LFAQLPE T0506 133 :AKLYLSL 2ou5A 115 :RMNYQGP T0506 140 :PD 2ou5A 135 :PN T0506 142 :TRLYRLRTEGVQINGGPAR 2ou5A 138 :FTRLICHLSEIDVLHLTTP T0506 230 :LARLW 2ou5A 157 :HQRAV Number of specific fragments extracted= 15 number of extra gaps= 1 total=96 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_506942226.pdb -s /var/tmp/to_scwrl_506942226.seq -o /var/tmp/from_scwrl_506942226.pdb > /var/tmp/scwrl_506942226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_506942226.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ol5A/T0506-2ol5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ol5A expands to /projects/compbio/data/pdb/2ol5.pdb.gz 2ol5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0506 read from 2ol5A/T0506-2ol5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ol5A read from 2ol5A/T0506-2ol5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2ol5A to template set # found chain 2ol5A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETD 2ol5A 51 :LYGHFARSNPQWNDIQHQ T0506 86 :RISVTLAP 2ol5A 69 :TVLAIFHG T0506 94 :FGKG 2ol5A 86 :YETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 175 :SGAEELMAAAESEATRL 2ol5A 169 :NHPAHRQERIIKQLEQM T0506 192 :NAIKGEASR 2ol5A 190 :EKRIASLMK Number of specific fragments extracted= 12 number of extra gaps= 1 total=108 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_551345807.pdb -s /var/tmp/to_scwrl_551345807.seq -o /var/tmp/from_scwrl_551345807.pdb > /var/tmp/scwrl_551345807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_551345807.pdb Number of alignments=10 # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 10 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 11: T0506+T0506-2arzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:2arzA at pool[6] 226.423 cost/residue, 433 clashes 0.328 breaks # command:# naming current conformation T0506.try1-al1 # command:# reading script from file T0506.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2arzA/T0506-2arzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2arzA/T0506-2arzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2arzA read from 2arzA/T0506-2arzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLSG 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFA T0506 181 :MAAAESEATRLNAIKGEASRLAVLA 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=115 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1612323354.pdb -s /var/tmp/to_scwrl_1612323354.seq -o /var/tmp/from_scwrl_1612323354.pdb > /var/tmp/scwrl_1612323354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1612323354.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ig6A/T0506-2ig6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2ig6A/T0506-2ig6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ig6A read from 2ig6A/T0506-2ig6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGKG 2ig6A 63 :GMNKKG T0506 103 :PRLTLVGRADRIGPD 2ig6A 69 :QWIRLTGEVANDDRR T0506 121 :LAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 84 :EVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 225 :ASASDLARLWF 2ig6A 119 :ICSFKGENETF Number of specific fragments extracted= 6 number of extra gaps= 0 total=121 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1399432347.pdb -s /var/tmp/to_scwrl_1399432347.seq -o /var/tmp/from_scwrl_1399432347.pdb > /var/tmp/scwrl_1399432347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399432347.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2iabA/T0506-2iabA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2iabA/T0506-2iabA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2iabA read from 2iabA/T0506-2iabA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2iabA 51 :TFLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDE 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 119 :VPLAIARY 2iabA 102 :GDTFAEKT T0506 134 :KLYLSLPD 2iabA 112 :DPRRLTTS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE T0506 168 :AD 2iabA 136 :AN T0506 218 :DPDGIDLASASDLA 2iabA 138 :ELSGRELMRDGEWL Number of specific fragments extracted= 8 number of extra gaps= 1 total=129 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1688139799.pdb -s /var/tmp/to_scwrl_1688139799.seq -o /var/tmp/from_scwrl_1688139799.pdb > /var/tmp/scwrl_1688139799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688139799.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2hhzA/T0506-2hhzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2hhzA/T0506-2hhzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2hhzA read from 2hhzA/T0506-2hhzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLDP 2hhzA 3 :LKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAI 2hhzA 72 :YLIQVVRVEGTARPVENDYLKTVF T0506 128 :ARYPKAKLYL 2hhzA 96 :ADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS Number of specific fragments extracted= 6 number of extra gaps= 1 total=135 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_513538158.pdb -s /var/tmp/to_scwrl_513538158.seq -o /var/tmp/from_scwrl_513538158.pdb > /var/tmp/scwrl_513538158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_513538158.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2htdA/T0506-2htdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2htdA/T0506-2htdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2htdA read from 2htdA/T0506-2htdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVRVAR 2htdA 2 :KKLNTNKLTEEQVNLFK T0506 39 :TAALATLDP 2htdA 21 :LVYLATVDA T0506 49 :SGYPYTTA 2htdA 30 :DGNPQVGP T0506 62 :EP 2htdA 38 :KG T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPD 2htdA 80 :TAVRVLATAEVHEDD T0506 120 :PLAIARY 2htdA 95 :DYAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=144 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_982172963.pdb -s /var/tmp/to_scwrl_982172963.seq -o /var/tmp/from_scwrl_982172963.pdb > /var/tmp/scwrl_982172963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_982172963.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2re7A/T0506-2re7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2re7A/T0506-2re7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2re7A read from 2re7A/T0506-2re7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)P23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 20 :AG 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PD 2re7A 92 :DK T0506 118 :EVPLA 2re7A 95 :KLDEL T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQI 2re7A 113 :EDANIQLIKVVPHGVEC Number of specific fragments extracted= 10 number of extra gaps= 2 total=154 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1972432425.pdb -s /var/tmp/to_scwrl_1972432425.seq -o /var/tmp/from_scwrl_1972432425.pdb > /var/tmp/scwrl_1972432425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1972432425.pdb Number of alignments=16 # command:# reading script from file T0506.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2arzA/T0506-2arzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2arzA/T0506-2arzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2arzA read from 2arzA/T0506-2arzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLSG 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFA T0506 181 :MAAAESEATRLNAIKGEASRLAVLA 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=161 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_219202302.pdb -s /var/tmp/to_scwrl_219202302.seq -o /var/tmp/from_scwrl_219202302.pdb > /var/tmp/scwrl_219202302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219202302.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2iabA/T0506-2iabA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2iabA/T0506-2iabA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2iabA read from 2iabA/T0506-2iabA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIG 2iabA 81 :DLVLVEGTALPLE T0506 116 :PDEVPLAIARY 2iabA 99 :DGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASDL 2iabA 139 :LSGRELMRDGEW Number of specific fragments extracted= 10 number of extra gaps= 1 total=171 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_153132334.pdb -s /var/tmp/to_scwrl_153132334.seq -o /var/tmp/from_scwrl_153132334.pdb > /var/tmp/scwrl_153132334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_153132334.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ig6A/T0506-2ig6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2ig6A/T0506-2ig6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ig6A read from 2ig6A/T0506-2ig6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2ig6A)H-11 T0506 10 :TPRG 2ig6A -10 :HHHH T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTAT 2ig6A 21 :GDQPRVRPF T0506 58 :NIGIE 2ig6A 31 :AVFEY T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 36 :EGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASN 2ig6A 120 :CSFKGENET Number of specific fragments extracted= 9 number of extra gaps= 0 total=180 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1694841343.pdb -s /var/tmp/to_scwrl_1694841343.seq -o /var/tmp/from_scwrl_1694841343.pdb > /var/tmp/scwrl_1694841343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1694841343.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2hhzA/T0506-2hhzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2hhzA/T0506-2hhzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2hhzA read from 2hhzA/T0506-2hhzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)A236 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTAT 2hhzA 23 :EYGNPHARHA T0506 58 :NIGIEPD 2hhzA 34 :ITAANEE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2hhzA 41 :GIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGP 2hhzA 77 :VRVEGTARPVEN T0506 121 :LAIARYIARYPKAKLYL 2hhzA 89 :DYLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 229 :DLARLWF 2hhzA 132 :HKYIFSI Number of specific fragments extracted= 10 number of extra gaps= 1 total=190 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_974716829.pdb -s /var/tmp/to_scwrl_974716829.seq -o /var/tmp/from_scwrl_974716829.pdb > /var/tmp/scwrl_974716829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_974716829.pdb Number of alignments=20 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2re7A/T0506-2re7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2re7A/T0506-2re7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2re7A read from 2re7A/T0506-2re7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IE 2re7A 41 :VN T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 44 :DNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIA 2re7A 94 :AKLDELWS T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=199 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1382963712.pdb -s /var/tmp/to_scwrl_1382963712.seq -o /var/tmp/from_scwrl_1382963712.pdb > /var/tmp/scwrl_1382963712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382963712.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2i51A/T0506-2i51A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2i51A/T0506-2i51A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2i51A read from 2i51A/T0506-2i51A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2i51A in template set T0506 15 :KIEP 2i51A 2 :SLAP T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPD 2i51A 47 :FLED T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 52 :NQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRI 2i51A 85 :EQFRMAGDLTLI T0506 115 :GP 2i51A 99 :DD T0506 117 :DEVPLAIARYIA 2i51A 104 :DLQPARIAMWQE T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 227 :ASDLA 2i51A 173 :PQNRW Number of specific fragments extracted= 12 number of extra gaps= 0 total=211 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_961596315.pdb -s /var/tmp/to_scwrl_961596315.seq -o /var/tmp/from_scwrl_961596315.pdb > /var/tmp/scwrl_961596315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_961596315.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2htdA/T0506-2htdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2htdA/T0506-2htdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2htdA read from 2htdA/T0506-2htdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVRVARD 2htdA 2 :KKLNTNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTAT 2htdA 29 :ADGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 40 :SMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPD 2htdA 80 :TAVRVLATAEVHEDD T0506 120 :PLAIA 2htdA 95 :DYAKK T0506 126 :YIAR 2htdA 100 :VLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=220 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_927343013.pdb -s /var/tmp/to_scwrl_927343013.seq -o /var/tmp/from_scwrl_927343013.pdb > /var/tmp/scwrl_927343013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_927343013.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2qeaA/T0506-2qeaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2qeaA/T0506-2qeaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2qeaA read from 2qeaA/T0506-2qeaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATL 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIK T0506 48 :VSG 2qeaA 24 :GQG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPL 2qeaA 90 :EALDE T0506 125 :RYIARYPKA 2qeaA 99 :VADAWFDGG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2qeaA 108 :QHDPDVCLLKFTPASGEISITEGG T0506 178 :EELMAAAESEAT 2qeaA 132 :GARFLYEIAKAH Number of specific fragments extracted= 10 number of extra gaps= 0 total=230 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1283492998.pdb -s /var/tmp/to_scwrl_1283492998.seq -o /var/tmp/from_scwrl_1283492998.pdb > /var/tmp/scwrl_1283492998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1283492998.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ou5A/T0506-2ou5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0506 read from 2ou5A/T0506-2ou5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ou5A read from 2ou5A/T0506-2ou5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 24 :FEAVRVARDVLHT 2ou5A 7 :TGLLDTVWQQFGR T0506 37 :SRTAALATLD 2ou5A 28 :ARHPTLATIG T0506 48 :VSG 2ou5A 38 :TDG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEPDGT 2ou5A 51 :ASHAEA T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2ou5A 58 :LEFHTDAASPKVAHIRRDARVAIHI T0506 93 :PFGK 2ou5A 83 :WIPK T0506 101 :TL 2ou5A 87 :AS T0506 105 :LTLVGRADRI 2ou5A 91 :VRAKAIAKIL T0506 115 :GPD 2ou5A 103 :DPN T0506 126 :YIARYPK 2ou5A 106 :LFAQLPE T0506 133 :AKLYLSL 2ou5A 115 :RMNYQGP T0506 140 :PD 2ou5A 135 :PN T0506 142 :TRLYRLRTEGVQINGGPAR 2ou5A 138 :FTRLICHLSEIDVLHLTTP T0506 230 :LARLW 2ou5A 157 :HQRAV Number of specific fragments extracted= 15 number of extra gaps= 1 total=245 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1616756733.pdb -s /var/tmp/to_scwrl_1616756733.seq -o /var/tmp/from_scwrl_1616756733.pdb > /var/tmp/scwrl_1616756733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1616756733.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3cp3A/T0506-3cp3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 3cp3A expands to /projects/compbio/data/pdb/3cp3.pdb.gz 3cp3A:Skipped atom 115, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 117, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 119, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 121, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 123, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 125, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 222, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 251, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 253, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 255, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 364, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 366, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 400, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 402, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 404, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 406, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 408, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 410, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 412, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 414, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 416, because occupancy 0.400 <= existing 0.600 in 3cp3A Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1046, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1048, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1050, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1052, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1056, because occupancy 0.500 <= existing 0.500 in 3cp3A Skipped atom 1058, because occupancy 0.500 <= existing 0.500 in 3cp3A # T0506 read from 3cp3A/T0506-3cp3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 3cp3A read from 3cp3A/T0506-3cp3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 3cp3A to template set # found chain 3cp3A in template set Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 28 :RVARDVLHTSRTAALATLD 3cp3A 15 :SDSLSRLSSESVGRLVVHR T0506 48 :VSG 3cp3A 34 :KDD T0506 52 :PYTTATNIGIE 3cp3A 37 :LDIFPVNFVLD T0506 64 :DGT 3cp3A 51 :EQP T0506 67 :PFFFA 3cp3A 55 :VYFRT T0506 84 :DARISVTL 3cp3A 71 :NSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 132 :K 3cp3A 108 :D T0506 133 :AKLYLSLPDTRLYRLRTEGVQING 3cp3A 112 :LKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 1 total=255 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1567630879.pdb -s /var/tmp/to_scwrl_1567630879.seq -o /var/tmp/from_scwrl_1567630879.pdb > /var/tmp/scwrl_1567630879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1567630879.pdb Number of alignments=26 # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 26 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 27: T0506.try1-al1+T0506-2arzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:2arzA at pool[17] 218.462 cost/residue, 287 clashes 0.329 breaks # command:# naming current conformation T0506.try1-al2 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file all-align.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ci0A expands to /projects/compbio/data/pdb/1ci0.pdb.gz 1ci0A:# T0506 read from all-align.a2m # 1ci0A read from all-align.a2m # adding 1ci0A to template set # found chain 1ci0A in template set Warning: unaligning (T0506)P219 because last residue in template chain is (1ci0A)P228 T0506 10 :TPRGTKIEPSA 1ci0A 25 :TLNEKQLTDDP T0506 21 :GAPFEAVRVARD 1ci0A 37 :DLFTKWFNEAKE T0506 33 :VLHTSRTAALATLDPVSGYPYTTATNIGIEPDG 1ci0A 51 :RETLPEAITFSSAELPSGRVSSRILLFKELDHR T0506 67 :PFFFAAG 1ci0A 84 :GFTIYSN T0506 74 :LTLHARNMETDARISVTLAP 1ci0A 93 :TSRKAHDIATNPNAAIVFFW T0506 104 :RLTLVGRADRIGPDE 1ci0A 118 :QVRVEGITEHVNRET T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLR 1ci0A 133 :SERYFKTRPRGSKIGAWASRQSDVIKNRE T0506 149 :TEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLN 1ci0A 164 :DELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLH T0506 199 :SRLAVLAGAKTGRWKITSID 1ci0A 208 :DRFVYRRKTENDPWKVVRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=264 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_367452208.pdb -s /var/tmp/to_scwrl_367452208.seq -o /var/tmp/from_scwrl_367452208.pdb > /var/tmp/scwrl_367452208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367452208.pdb Number of alignments=27 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 38 :RTAALATLDPVSGYPYTTATNIGIEPDG 1ci0A 56 :EAITFSSAELPSGRVSSRILLFKELDHR T0506 67 :PFFFAAG 1ci0A 84 :GFTIYSN T0506 74 :LTLHARNMETDARISVTLAP 1ci0A 93 :TSRKAHDIATNPNAAIVFFW T0506 101 :T 1ci0A 114 :D T0506 102 :LPRLTLVGRADRIGPDE 1ci0A 116 :QRQVRVEGITEHVNRET T0506 120 :PLAIARYIARYPKAKLYLSL 1ci0A 133 :SERYFKTRPRGSKIGAWASR Number of specific fragments extracted= 6 number of extra gaps= 0 total=270 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_640665578.pdb -s /var/tmp/to_scwrl_640665578.seq -o /var/tmp/from_scwrl_640665578.pdb > /var/tmp/scwrl_640665578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_640665578.pdb Number of alignments=28 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 1 :MLDVAPP 1ci0A 25 :TLNEKQL T0506 12 :RGTKIEPSAGAPFEAVR 1ci0A 32 :TDDPIDLFTKWFNEAKE T0506 32 :DVLHT 1ci0A 49 :DPRET T0506 37 :SRTAALATLDPVSGYPYTTATNI 1ci0A 55 :PEAITFSSAELPSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFF T0506 98 :DALTLPRLTLVGRADRIGPDEVP 1ci0A 112 :WKDLQRQVRVEGITEHVNRETSE T0506 125 :RYIARYPKAKLYLSLPDTRLYRL 1ci0A 135 :RYFKTRPRGSKIGAWASRQSDVI T0506 240 :ETLKQFEKALAQLLK 1ci0A 158 :KNREELDELTQKNTE Number of specific fragments extracted= 8 number of extra gaps= 0 total=278 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_104462467.pdb -s /var/tmp/to_scwrl_104462467.seq -o /var/tmp/from_scwrl_104462467.pdb > /var/tmp/scwrl_104462467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104462467.pdb Number of alignments=29 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 3 :DVAPP 1ci0A 27 :NEKQL T0506 12 :RGTKIEPSAGAPFEAVR 1ci0A 32 :TDDPIDLFTKWFNEAKE T0506 32 :DVLHT 1ci0A 49 :DPRET T0506 37 :SRTAALATLDPVSGYPYTTATNI 1ci0A 55 :PEAITFSSAELPSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFF T0506 98 :DALTLPRLTLVGRADRIGPDEVP 1ci0A 112 :WKDLQRQVRVEGITEHVNRETSE T0506 125 :RYIARYPKAKLYLSLPDTRLYRL 1ci0A 135 :RYFKTRPRGSKIGAWASRQSDVI T0506 240 :ETLKQFEKALAQ 1ci0A 158 :KNREELDELTQK T0506 252 :LLK 1ci0A 226 :LAP Number of specific fragments extracted= 9 number of extra gaps= 0 total=287 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_303562939.pdb -s /var/tmp/to_scwrl_303562939.seq -o /var/tmp/from_scwrl_303562939.pdb > /var/tmp/scwrl_303562939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_303562939.pdb Number of alignments=30 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 31 :RDVLHT 1ci0A 48 :EDPRET T0506 37 :SRTAALATLDPVSGYPYTTATNI 1ci0A 55 :PEAITFSSAELPSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFF T0506 98 :DALTLPRLTLVGRADRIGPDEVP 1ci0A 112 :WKDLQRQVRVEGITEHVNRETSE T0506 125 :RYIARYPKAKLYLSLPD 1ci0A 135 :RYFKTRPRGSKIGAWAS Number of specific fragments extracted= 5 number of extra gaps= 0 total=292 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_847195990.pdb -s /var/tmp/to_scwrl_847195990.seq -o /var/tmp/from_scwrl_847195990.pdb > /var/tmp/scwrl_847195990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847195990.pdb Number of alignments=31 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 29 :VARDVLHT 1ci0A 46 :AKEDPRET T0506 37 :SRTAALATLDPVSGYPYTTATNI 1ci0A 55 :PEAITFSSAELPSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFF T0506 98 :DALTLPRLTLVGRADRIGPDEVP 1ci0A 112 :WKDLQRQVRVEGITEHVNRETSE T0506 125 :RYIARYPKAKLYLSLPDTRLYRL 1ci0A 135 :RYFKTRPRGSKIGAWASRQSDVI T0506 206 :GAKTGRWKITSIDPDGIDL 1ci0A 180 :IPCPDYWGGLRIVPLEIEF Number of specific fragments extracted= 6 number of extra gaps= 0 total=298 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_512582791.pdb -s /var/tmp/to_scwrl_512582791.seq -o /var/tmp/from_scwrl_512582791.pdb > /var/tmp/scwrl_512582791.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512582791.pdb Number of alignments=32 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)P219 because last residue in template chain is (1ci0A)P228 T0506 13 :GTKIEPSAGAPFEAVRVARDVLHTS 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKED T0506 38 :RTAALATLDPVSGYPYT 1ci0A 56 :EAITFSSAELPSGRVSS T0506 55 :TATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1ci0A 74 :ILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQR T0506 104 :RLTLVGRADRIGPDEV 1ci0A 118 :QVRVEGITEHVNRETS T0506 142 :TRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLN 1ci0A 134 :ERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPD T0506 193 :AIKGEASRLAVLAGAKTGRWKITSID 1ci0A 202 :RPSRLHDRFVYRRKTENDPWKVVRLA Number of specific fragments extracted= 6 number of extra gaps= 0 total=304 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_103389612.pdb -s /var/tmp/to_scwrl_103389612.seq -o /var/tmp/from_scwrl_103389612.pdb > /var/tmp/scwrl_103389612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_103389612.pdb Number of alignments=33 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P219 because last residue in template chain is (1ci0A)P228 T0506 1 :MLDVAPPVITPRGT 1ci0A 25 :TLNEKQLTDDPIDL T0506 19 :SAGAPFEAVRV 1ci0A 39 :FTKWFNEAKED T0506 32 :DVLHTSRTAALATLDPVSGYPYTT 1ci0A 50 :PRETLPEAITFSSAELPSGRVSSR T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1ci0A 75 :LLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQR T0506 104 :RLTLVGRADRIGPDEV 1ci0A 118 :QVRVEGITEHVNRETS T0506 143 :RLYRLRTEGVQINGGPARNASNI 1ci0A 135 :RYFKTRPRGSKIGAWASRQSDVI T0506 175 :SGAEELMAAAESEATRLNAIK 1ci0A 158 :KNREELDELTQKNTERFKDAE T0506 196 :GE 1ci0A 201 :GR T0506 198 :ASRLAVLAGAKTGRWKITSID 1ci0A 207 :HDRFVYRRKTENDPWKVVRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=313 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1628792119.pdb -s /var/tmp/to_scwrl_1628792119.seq -o /var/tmp/from_scwrl_1628792119.pdb > /var/tmp/scwrl_1628792119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628792119.pdb Number of alignments=34 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 41 :ALATLDPVSGYPYT 1ci0A 59 :TFSSAELPSGRVSS T0506 55 :TATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1ci0A 74 :ILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQR T0506 104 :RLTLVGRADRIGPDEV 1ci0A 118 :QVRVEGITEHVNRETS Number of specific fragments extracted= 3 number of extra gaps= 0 total=316 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_933742614.pdb -s /var/tmp/to_scwrl_933742614.seq -o /var/tmp/from_scwrl_933742614.pdb > /var/tmp/scwrl_933742614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933742614.pdb Number of alignments=35 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 37 :SRTAALATLDPVSGYPYTT 1ci0A 55 :PEAITFSSAELPSGRVSSR T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1ci0A 75 :LLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQR T0506 104 :RLTLVGRADRIGPDEVP 1ci0A 118 :QVRVEGITEHVNRETSE Number of specific fragments extracted= 3 number of extra gaps= 0 total=319 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1171357314.pdb -s /var/tmp/to_scwrl_1171357314.seq -o /var/tmp/from_scwrl_1171357314.pdb > /var/tmp/scwrl_1171357314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1171357314.pdb Number of alignments=36 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 11 :PRGTKI 1ci0A 141 :PRGSKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=320 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=320 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFV T0506 168 :ADLRTDLSGA 1ci0A 218 :NDPWKVVRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=329 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1666847886.pdb -s /var/tmp/to_scwrl_1666847886.seq -o /var/tmp/from_scwrl_1666847886.pdb > /var/tmp/scwrl_1666847886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1666847886.pdb Number of alignments=37 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)E178 because last residue in template chain is (1ci0A)P228 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1ci0A 36 :IDLFTKWFNEAKEDPRETLPEAITFSS T0506 48 :VS 1ci0A 63 :AE T0506 50 :GYPYTTATNIG 1ci0A 68 :GRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFV T0506 168 :ADLRTDLSGA 1ci0A 218 :NDPWKVVRLA Number of specific fragments extracted= 8 number of extra gaps= 0 total=337 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1110458192.pdb -s /var/tmp/to_scwrl_1110458192.seq -o /var/tmp/from_scwrl_1110458192.pdb > /var/tmp/scwrl_1110458192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1110458192.pdb Number of alignments=38 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1ci0A 36 :IDLFTKWFNEAKEDPRETLPEAITFSS T0506 48 :V 1ci0A 63 :A T0506 49 :SGYPYTTATNIG 1ci0A 67 :SGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKT T0506 243 :KQFEKALAQLLK 1ci0A 217 :ENDPWKVVRLAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=347 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1190158709.pdb -s /var/tmp/to_scwrl_1190158709.seq -o /var/tmp/from_scwrl_1190158709.pdb > /var/tmp/scwrl_1190158709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1190158709.pdb Number of alignments=39 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNIT 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRF T0506 223 :DLA 1ci0A 211 :VYR T0506 227 :ASDLARLW 1ci0A 220 :PWKVVRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=357 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1654034946.pdb -s /var/tmp/to_scwrl_1654034946.seq -o /var/tmp/from_scwrl_1654034946.pdb > /var/tmp/scwrl_1654034946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1654034946.pdb Number of alignments=40 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFV T0506 224 :L 1ci0A 212 :Y T0506 227 :ASDLARLW 1ci0A 220 :PWKVVRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=367 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1822009692.pdb -s /var/tmp/to_scwrl_1822009692.seq -o /var/tmp/from_scwrl_1822009692.pdb > /var/tmp/scwrl_1822009692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1822009692.pdb Number of alignments=41 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)F235 because last residue in template chain is (1ci0A)P228 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNIT 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRF T0506 223 :D 1ci0A 211 :V T0506 227 :ASDLARLW 1ci0A 220 :PWKVVRLA Number of specific fragments extracted= 8 number of extra gaps= 0 total=375 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_573601844.pdb -s /var/tmp/to_scwrl_573601844.seq -o /var/tmp/from_scwrl_573601844.pdb > /var/tmp/scwrl_573601844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573601844.pdb Number of alignments=42 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)P219 because last residue in template chain is (1ci0A)P228 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFV T0506 204 :LAGAKTGRWKITSID 1ci0A 213 :RRKTENDPWKVVRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=384 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1781381208.pdb -s /var/tmp/to_scwrl_1781381208.seq -o /var/tmp/from_scwrl_1781381208.pdb > /var/tmp/scwrl_1781381208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1781381208.pdb Number of alignments=43 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)E178 because last residue in template chain is (1ci0A)P228 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDV 1ci0A 36 :IDLFTKWFNEAKED T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIG 1ci0A 52 :ETLPEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFV T0506 168 :ADLRTDLSGA 1ci0A 218 :NDPWKVVRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=393 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_753437961.pdb -s /var/tmp/to_scwrl_753437961.seq -o /var/tmp/from_scwrl_753437961.pdb > /var/tmp/scwrl_753437961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753437961.pdb Number of alignments=44 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 27 :VRVARDVLHT 1ci0A 36 :IDLFTKWFNE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDG 1ci0A 80 :LDHRG T0506 67 :PFFFAAGL 1ci0A 85 :FTIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDR T0506 222 :IDLAS 1ci0A 210 :FVYRR T0506 227 :ASDLARLW 1ci0A 220 :PWKVVRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=403 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_782125747.pdb -s /var/tmp/to_scwrl_782125747.seq -o /var/tmp/from_scwrl_782125747.pdb > /var/tmp/scwrl_782125747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_782125747.pdb Number of alignments=45 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)E237 because last residue in template chain is (1ci0A)P228 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 23 :PFEAVRVARD 1ci0A 39 :FTKWFNEAKE T0506 35 :HTSRTAALATLDPVSGYPYTTATNIG 1ci0A 53 :TLPEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIG 1ci0A 117 :RQVRVEGITEHVN T0506 116 :PDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASN 1ci0A 160 :REELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHD T0506 223 :DLAS 1ci0A 209 :RFVY T0506 227 :ASDLAR 1ci0A 220 :PWKVVR T0506 235 :FA 1ci0A 226 :LA Number of specific fragments extracted= 9 number of extra gaps= 0 total=412 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_269621968.pdb -s /var/tmp/to_scwrl_269621968.seq -o /var/tmp/from_scwrl_269621968.pdb > /var/tmp/scwrl_269621968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_269621968.pdb Number of alignments=46 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)F235 because last residue in template chain is (1ci0A)P228 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDR T0506 222 :IDLA 1ci0A 210 :FVYR T0506 227 :ASDLARLW 1ci0A 220 :PWKVVRLA Number of specific fragments extracted= 8 number of extra gaps= 0 total=420 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1378316241.pdb -s /var/tmp/to_scwrl_1378316241.seq -o /var/tmp/from_scwrl_1378316241.pdb > /var/tmp/scwrl_1378316241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1378316241.pdb Number of alignments=47 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)F235 because last residue in template chain is (1ci0A)P228 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNIT 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRF T0506 223 :DL 1ci0A 211 :VY T0506 227 :ASDLARLW 1ci0A 220 :PWKVVRLA Number of specific fragments extracted= 8 number of extra gaps= 0 total=428 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_460158080.pdb -s /var/tmp/to_scwrl_460158080.seq -o /var/tmp/from_scwrl_460158080.pdb > /var/tmp/scwrl_460158080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460158080.pdb Number of alignments=48 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFV Number of specific fragments extracted= 8 number of extra gaps= 0 total=436 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_820200277.pdb -s /var/tmp/to_scwrl_820200277.seq -o /var/tmp/from_scwrl_820200277.pdb > /var/tmp/scwrl_820200277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820200277.pdb Number of alignments=49 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1ci0A 36 :IDLFTKWFNEAKEDPRETLPEAITFSS T0506 48 :VS 1ci0A 63 :AE T0506 50 :GYPYTTATNIG 1ci0A 68 :GRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFV Number of specific fragments extracted= 7 number of extra gaps= 0 total=443 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1010896700.pdb -s /var/tmp/to_scwrl_1010896700.seq -o /var/tmp/from_scwrl_1010896700.pdb > /var/tmp/scwrl_1010896700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1010896700.pdb Number of alignments=50 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1ci0A 36 :IDLFTKWFNEAKEDPRETLPEAITFSS T0506 48 :V 1ci0A 63 :A T0506 49 :SGYPYTTATNIG 1ci0A 67 :SGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPA 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVY Number of specific fragments extracted= 9 number of extra gaps= 0 total=452 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2136688634.pdb -s /var/tmp/to_scwrl_2136688634.seq -o /var/tmp/from_scwrl_2136688634.pdb > /var/tmp/scwrl_2136688634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2136688634.pdb Number of alignments=51 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDR Number of specific fragments extracted= 8 number of extra gaps= 0 total=460 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_421954019.pdb -s /var/tmp/to_scwrl_421954019.seq -o /var/tmp/from_scwrl_421954019.pdb > /var/tmp/scwrl_421954019.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_421954019.pdb Number of alignments=52 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDR Number of specific fragments extracted= 8 number of extra gaps= 0 total=468 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1392960198.pdb -s /var/tmp/to_scwrl_1392960198.seq -o /var/tmp/from_scwrl_1392960198.pdb > /var/tmp/scwrl_1392960198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1392960198.pdb Number of alignments=53 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDR Number of specific fragments extracted= 6 number of extra gaps= 0 total=474 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1905567147.pdb -s /var/tmp/to_scwrl_1905567147.seq -o /var/tmp/from_scwrl_1905567147.pdb > /var/tmp/scwrl_1905567147.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1905567147.pdb Number of alignments=54 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNIT 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRF Number of specific fragments extracted= 8 number of extra gaps= 0 total=482 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_334731550.pdb -s /var/tmp/to_scwrl_334731550.seq -o /var/tmp/from_scwrl_334731550.pdb > /var/tmp/scwrl_334731550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334731550.pdb Number of alignments=55 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDV 1ci0A 36 :IDLFTKWFNEAKED T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIG 1ci0A 52 :ETLPEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGT 1ci0A 80 :LDHRGF T0506 68 :FFFAAGL 1ci0A 86 :TIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASN 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHD Number of specific fragments extracted= 8 number of extra gaps= 0 total=490 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_115079780.pdb -s /var/tmp/to_scwrl_115079780.seq -o /var/tmp/from_scwrl_115079780.pdb > /var/tmp/scwrl_115079780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115079780.pdb Number of alignments=56 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 27 :VRVARDVLHT 1ci0A 36 :IDLFTKWFNE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDG 1ci0A 80 :LDHRG T0506 67 :PFFFAAGL 1ci0A 85 :FTIYSNWG T0506 75 :TLHARNMETDARISVTLAPFGKG 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASN 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHD Number of specific fragments extracted= 8 number of extra gaps= 0 total=498 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1536920130.pdb -s /var/tmp/to_scwrl_1536920130.seq -o /var/tmp/from_scwrl_1536920130.pdb > /var/tmp/scwrl_1536920130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536920130.pdb Number of alignments=57 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 23 :PFEAVRVARD 1ci0A 39 :FTKWFNEAKE T0506 35 :HTSRTAALATLDPVSGYPYTTATNIG 1ci0A 53 :TLPEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIG 1ci0A 117 :RQVRVEGITEHVN T0506 116 :PDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNAS 1ci0A 160 :REELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLH Number of specific fragments extracted= 6 number of extra gaps= 0 total=504 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_702183758.pdb -s /var/tmp/to_scwrl_702183758.seq -o /var/tmp/from_scwrl_702183758.pdb > /var/tmp/scwrl_702183758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_702183758.pdb Number of alignments=58 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASN 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHD Number of specific fragments extracted= 6 number of extra gaps= 0 total=510 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_755745358.pdb -s /var/tmp/to_scwrl_755745358.seq -o /var/tmp/from_scwrl_755745358.pdb > /var/tmp/scwrl_755745358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755745358.pdb Number of alignments=59 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1ci0A)F24 T0506 8 :VITPRGTKIEP 1ci0A 25 :TLNEKQLTDDP T0506 20 :AGAPFEAVRVARDVLHT 1ci0A 36 :IDLFTKWFNEAKEDPRE T0506 37 :SRTAALATLDPVSGYPYTTATNIG 1ci0A 55 :PEAITFSSAELPSGRVSSRILLFK T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ci0A 117 :RQVRVEGITEHVNRETSERYFKTRPR T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1ci0A 173 :RFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDR Number of specific fragments extracted= 6 number of extra gaps= 0 total=516 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1641382597.pdb -s /var/tmp/to_scwrl_1641382597.seq -o /var/tmp/from_scwrl_1641382597.pdb > /var/tmp/scwrl_1641382597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1641382597.pdb Number of alignments=60 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 19 :SAGAPFEAVRVAR 1ci0A 28 :EKQLTDDPIDLFT T0506 47 :PVSGYPYTTATNIGIEP 1ci0A 64 :ELPSGRVSSRILLFKEL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 83 :RGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYLS 1ci0A 132 :TSERYFKTRPRGSKIGA T0506 163 :SNITPADLRTDLSGAEELMAAAESEATR 1ci0A 149 :WASRQSDVIKNREELDELTQKNTERFKD T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=523 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1005746697.pdb -s /var/tmp/to_scwrl_1005746697.seq -o /var/tmp/from_scwrl_1005746697.pdb > /var/tmp/scwrl_1005746697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005746697.pdb Number of alignments=61 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (1ci0A)F24 T0506 44 :TLD 1ci0A 25 :TLN T0506 47 :PVSGYPYTTATNIGIEP 1ci0A 50 :PRETLPEAITFSSAELP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 83 :RGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKA 1ci0A 132 :TSERYFKTRPRG T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVLA 1ci0A 144 :SKIGAWASRQSDVIKNREELDELTQKNTERFKDA T0506 206 :GAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 1ci0A 180 :IPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=530 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1602941347.pdb -s /var/tmp/to_scwrl_1602941347.seq -o /var/tmp/from_scwrl_1602941347.pdb > /var/tmp/scwrl_1602941347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602941347.pdb Number of alignments=62 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (1ci0A)F24 T0506 25 :EAVR 1ci0A 25 :TLNE T0506 31 :RDVLHTSR 1ci0A 29 :KQLTDDPI T0506 41 :ALAT 1ci0A 37 :DLFT T0506 47 :PVSGYPYTTATNIGIEP 1ci0A 64 :ELPSGRVSSRILLFKEL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 83 :RGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYLSL 1ci0A 132 :TSERYFKTRPRGSKIGAW T0506 164 :NITPAD 1ci0A 150 :ASRQSD T0506 184 :AESEATRLNAIKGEASRLAVLA 1ci0A 156 :VIKNREELDELTQKNTERFKDA T0506 206 :G 1ci0A 180 :I T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=541 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_6481742.pdb -s /var/tmp/to_scwrl_6481742.seq -o /var/tmp/from_scwrl_6481742.pdb > /var/tmp/scwrl_6481742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6481742.pdb Number of alignments=63 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1ci0A)F24 T0506 15 :KIEPSAGAPFEAVRVARDVLHTSR 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 41 :ALATLDPVSGYPYTTATNI 1ci0A 59 :TFSSAELPSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 98 :D 1ci0A 155 :D T0506 112 :DRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGG 1ci0A 156 :VIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQG T0506 225 :ASASDLARLWFAERVET 1ci0A 202 :RPSRLHDRFVYRRKTEN T0506 250 :AQLLK 1ci0A 224 :VRLAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=548 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1109136309.pdb -s /var/tmp/to_scwrl_1109136309.seq -o /var/tmp/from_scwrl_1109136309.pdb > /var/tmp/scwrl_1109136309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1109136309.pdb Number of alignments=64 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1ci0A)F24 T0506 15 :KIEPSAGAPFEAVRVARDVLHTSR 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 39 :TAALATLD 1ci0A 57 :AITFSSAE T0506 48 :VSGYPYTTATNI 1ci0A 66 :PSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYL 1ci0A 132 :TSERYFKTRPRGSKIG T0506 162 :ASNITPADLRTDLSGAEELMA 1ci0A 148 :AWASRQSDVIKNREELDELTQ T0506 186 :SEA 1ci0A 169 :KNT T0506 204 :LAGAK 1ci0A 172 :ERFKD T0506 209 :TGRWKITSIDPDGIDLASASDLA 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSR T0506 232 :RLWFAERVET 1ci0A 209 :RFVYRRKTEN T0506 251 :QLLK 1ci0A 225 :RLAP Number of specific fragments extracted= 12 number of extra gaps= 0 total=560 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1084249820.pdb -s /var/tmp/to_scwrl_1084249820.seq -o /var/tmp/from_scwrl_1084249820.pdb > /var/tmp/scwrl_1084249820.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084249820.pdb Number of alignments=65 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1ci0A)F24 T0506 15 :KIEPSAGAPFEAVRVARDVLHTSR 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 41 :ALATLD 1ci0A 59 :TFSSAE T0506 48 :VSGYPYTTATNI 1ci0A 66 :PSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPK 1ci0A 132 :TSERYFKTRPR T0506 133 :A 1ci0A 147 :G T0506 135 :LYLS 1ci0A 148 :AWAS T0506 139 :LPDTR 1ci0A 153 :QSDVI T0506 164 :N 1ci0A 158 :K T0506 192 :NAIKGEASRLAVLAGAK 1ci0A 159 :NREELDELTQKNTERFK T0506 209 :TGRWKITSIDPDGIDLASAS 1ci0A 183 :PDYWGGLRIVPLEIEFWQGR T0506 229 :DLARLWFAERVETL 1ci0A 206 :LHDRFVYRRKTEND T0506 251 :QLLK 1ci0A 225 :RLAP Number of specific fragments extracted= 14 number of extra gaps= 0 total=574 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_940224356.pdb -s /var/tmp/to_scwrl_940224356.seq -o /var/tmp/from_scwrl_940224356.pdb > /var/tmp/scwrl_940224356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_940224356.pdb Number of alignments=66 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1ci0A)F24 T0506 15 :KIEPSAGAPFEAVRVARDVLHTSR 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 46 :DPVSGYPYTTATNIGIEP 1ci0A 49 :DPRETLPEAITFSSAELP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 83 :RGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYLS 1ci0A 132 :TSERYFKTRPRGSKIGA T0506 139 :LPDT 1ci0A 153 :QSDV T0506 163 :SN 1ci0A 157 :IK T0506 192 :NAIKGEASRLAVLAGAK 1ci0A 159 :NREELDELTQKNTERFK T0506 209 :TGRWKITSIDPDGIDLASASDLA 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSR T0506 232 :RLWFAERVET 1ci0A 209 :RFVYRRKTEN T0506 242 :LKQ 1ci0A 220 :PWK T0506 249 :LAQLLK 1ci0A 223 :VVRLAP Number of specific fragments extracted= 12 number of extra gaps= 0 total=586 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_133009977.pdb -s /var/tmp/to_scwrl_133009977.seq -o /var/tmp/from_scwrl_133009977.pdb > /var/tmp/scwrl_133009977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_133009977.pdb Number of alignments=67 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (1ci0A)F24 T0506 25 :EA 1ci0A 25 :TL T0506 27 :VRVARDV 1ci0A 36 :IDLFTKW T0506 47 :PVSGYPYTTATNIGIEP 1ci0A 50 :PRETLPEAITFSSAELP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 83 :RGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDE 1ci0A 117 :RQVRVEGITEHVNRET T0506 123 :IARYIARYPKAKLY 1ci0A 133 :SERYFKTRPRGSKI T0506 161 :NASNITPADLRTDLSGAEELMAAAESEATRLNA 1ci0A 147 :GAWASRQSDVIKNREELDELTQKNTERFKDAED T0506 209 :TGRWKITSIDPDGIDLASASDLA 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSR T0506 232 :RLWFAERVETLKQF 1ci0A 210 :FVYRRKTENDPWKV T0506 250 :AQLLK 1ci0A 224 :VRLAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=596 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_603614060.pdb -s /var/tmp/to_scwrl_603614060.seq -o /var/tmp/from_scwrl_603614060.pdb > /var/tmp/scwrl_603614060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_603614060.pdb Number of alignments=68 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1ci0A)F24 T0506 16 :IEPSAGAPFEAVRVARDVLHTSR 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAK T0506 45 :LDPVSGYPYTTATNIGIEP 1ci0A 48 :EDPRETLPEAITFSSAELP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 83 :RGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYLS 1ci0A 132 :TSERYFKTRPRGSKIGA T0506 139 :LPDTR 1ci0A 153 :QSDVI T0506 164 :NITPAD 1ci0A 158 :KNREEL T0506 178 :EELMAAAES 1ci0A 164 :DELTQKNTE T0506 205 :AGAK 1ci0A 173 :RFKD T0506 209 :TGRWKITSIDPDGIDLASASDLA 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSR T0506 232 :RLWFAERVET 1ci0A 209 :RFVYRRKTEN T0506 242 :L 1ci0A 220 :P T0506 250 :AQLLK 1ci0A 224 :VRLAP Number of specific fragments extracted= 13 number of extra gaps= 0 total=609 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2050682549.pdb -s /var/tmp/to_scwrl_2050682549.seq -o /var/tmp/from_scwrl_2050682549.pdb > /var/tmp/scwrl_2050682549.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050682549.pdb Number of alignments=69 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1ci0A)F24 Warning: unaligning (T0506)R238 because last residue in template chain is (1ci0A)P228 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRT 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 46 :DPVSGYPYTTATNIGIEP 1ci0A 49 :DPRETLPEAITFSSAELP T0506 64 :DGTPFFFAAGL 1ci0A 81 :DHRGFTIYSNW T0506 75 :TLHARNMETDARISVTLAPFGK 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDL T0506 102 :LPRLTLVGRADRIG 1ci0A 116 :QRQVRVEGITEHVN T0506 116 :PDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGG 1ci0A 160 :REELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQG T0506 173 :DLSGA 1ci0A 202 :RPSRL T0506 222 :IDLAS 1ci0A 207 :HDRFV T0506 227 :ASDLARLWFAE 1ci0A 217 :ENDPWKVVRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=618 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1323168686.pdb -s /var/tmp/to_scwrl_1323168686.seq -o /var/tmp/from_scwrl_1323168686.pdb > /var/tmp/scwrl_1323168686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1323168686.pdb Number of alignments=70 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1ci0A)F24 T0506 15 :KIEPSAGAPFEAVRVARDVLHTSR 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 46 :DPVSGYPYTTATNIGIEP 1ci0A 49 :DPRETLPEAITFSSAELP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 83 :RGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPK 1ci0A 132 :TSERYFKTRPR T0506 134 :KLYLS 1ci0A 147 :GAWAS T0506 139 :LPDTR 1ci0A 153 :QSDVI T0506 191 :LNAIKGEASRLAVLAGAK 1ci0A 158 :KNREELDELTQKNTERFK T0506 209 :TGRWKITSIDPDGIDLASASDLA 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSR T0506 232 :RLWFAERVE 1ci0A 209 :RFVYRRKTE T0506 241 :TLKQF 1ci0A 219 :DPWKV T0506 250 :AQLLK 1ci0A 224 :VRLAP Number of specific fragments extracted= 12 number of extra gaps= 0 total=630 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_110165359.pdb -s /var/tmp/to_scwrl_110165359.seq -o /var/tmp/from_scwrl_110165359.pdb > /var/tmp/scwrl_110165359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110165359.pdb Number of alignments=71 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1ci0A)F24 T0506 15 :KIEPSAGAPFEAVRVARDVLHTSR 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 41 :ALATLD 1ci0A 59 :TFSSAE T0506 48 :VSGYPYTTATNI 1ci0A 66 :PSGRVSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLY 1ci0A 132 :TSERYFKTRPRGSKI T0506 167 :PADLRTDLSGA 1ci0A 147 :GAWASRQSDVI T0506 191 :LNAIKGEASRLAVLAGAK 1ci0A 158 :KNREELDELTQKNTERFK T0506 209 :TGRWKITSIDPDGIDLASASDLA 1ci0A 183 :PDYWGGLRIVPLEIEFWQGRPSR T0506 232 :RLWFAERVETL 1ci0A 209 :RFVYRRKTEND T0506 252 :LLK 1ci0A 226 :LAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=641 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1725208594.pdb -s /var/tmp/to_scwrl_1725208594.seq -o /var/tmp/from_scwrl_1725208594.pdb > /var/tmp/scwrl_1725208594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1725208594.pdb Number of alignments=72 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKL 1ci0A 132 :TSERYFKTRPRGSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=644 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1896770530.pdb -s /var/tmp/to_scwrl_1896770530.seq -o /var/tmp/from_scwrl_1896770530.pdb > /var/tmp/scwrl_1896770530.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1896770530.pdb Number of alignments=73 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYP 1ci0A 132 :TSERYFKTRP Number of specific fragments extracted= 3 number of extra gaps= 0 total=647 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1891546567.pdb -s /var/tmp/to_scwrl_1891546567.seq -o /var/tmp/from_scwrl_1891546567.pdb > /var/tmp/scwrl_1891546567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891546567.pdb Number of alignments=74 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAK 1ci0A 132 :TSERYFKTRPRGS Number of specific fragments extracted= 3 number of extra gaps= 0 total=650 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_331162908.pdb -s /var/tmp/to_scwrl_331162908.seq -o /var/tmp/from_scwrl_331162908.pdb > /var/tmp/scwrl_331162908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_331162908.pdb Number of alignments=75 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 62 :EPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 81 :DHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAK 1ci0A 132 :TSERYFKTRPRGS Number of specific fragments extracted= 3 number of extra gaps= 0 total=653 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_531412630.pdb -s /var/tmp/to_scwrl_531412630.seq -o /var/tmp/from_scwrl_531412630.pdb > /var/tmp/scwrl_531412630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_531412630.pdb Number of alignments=76 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 77 :FKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAK 1ci0A 132 :TSERYFKTRPRGS Number of specific fragments extracted= 3 number of extra gaps= 0 total=656 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_13684888.pdb -s /var/tmp/to_scwrl_13684888.seq -o /var/tmp/from_scwrl_13684888.pdb > /var/tmp/scwrl_13684888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13684888.pdb Number of alignments=77 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 75 :LLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAK 1ci0A 132 :TSERYFKTRPRGS Number of specific fragments extracted= 3 number of extra gaps= 0 total=659 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1709479150.pdb -s /var/tmp/to_scwrl_1709479150.seq -o /var/tmp/from_scwrl_1709479150.pdb > /var/tmp/scwrl_1709479150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1709479150.pdb Number of alignments=78 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 57 :TNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 76 :LFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYLS 1ci0A 132 :TSERYFKTRPRGSKIGA T0506 139 :LPDT 1ci0A 153 :QSDV T0506 163 :SN 1ci0A 157 :IK T0506 192 :NAIKGEASRLAVLAGAK 1ci0A 159 :NREELDELTQKNTERFK T0506 209 :TGRWKITSIDPDGIDLASAS 1ci0A 183 :PDYWGGLRIVPLEIEFWQGR Number of specific fragments extracted= 7 number of extra gaps= 0 total=666 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_991570710.pdb -s /var/tmp/to_scwrl_991570710.seq -o /var/tmp/from_scwrl_991570710.pdb > /var/tmp/scwrl_991570710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_991570710.pdb Number of alignments=79 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPDE 1ci0A 117 :RQVRVEGITEHVNRET T0506 123 :IARYIARYPK 1ci0A 133 :SERYFKTRPR Number of specific fragments extracted= 3 number of extra gaps= 0 total=669 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_833885166.pdb -s /var/tmp/to_scwrl_833885166.seq -o /var/tmp/from_scwrl_833885166.pdb > /var/tmp/scwrl_833885166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833885166.pdb Number of alignments=80 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 47 :PVSGYPYTTATNI 1ci0A 65 :LPSGRVSSRILLF T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 80 :LDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYLS 1ci0A 132 :TSERYFKTRPRGSKIGA T0506 139 :LPDTR 1ci0A 153 :QSDVI T0506 164 :NITPAD 1ci0A 158 :KNREEL T0506 178 :EELMAAAES 1ci0A 164 :DELTQKNTE T0506 205 :AGAK 1ci0A 173 :RFKD T0506 209 :TGRWKITSIDPDGIDLASAS 1ci0A 183 :PDYWGGLRIVPLEIEFWQGR Number of specific fragments extracted= 9 number of extra gaps= 0 total=678 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_572892203.pdb -s /var/tmp/to_scwrl_572892203.seq -o /var/tmp/from_scwrl_572892203.pdb > /var/tmp/scwrl_572892203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_572892203.pdb Number of alignments=81 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1ci0A)F24 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRT 1ci0A 25 :TLNEKQLTDDPIDLFTKWFNEAKE T0506 46 :DPVSGYPYTTATNIGIEP 1ci0A 49 :DPRETLPEAITFSSAELP T0506 64 :DGTPFFFAAGL 1ci0A 81 :DHRGFTIYSNW T0506 75 :TLHARNMETDARISVTLAPFGK 1ci0A 94 :SRKAHDIATNPNAAIVFFWKDL T0506 102 :LPRLTLVGRADRIG 1ci0A 116 :QRQVRVEGITEHVN T0506 116 :PDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGG 1ci0A 160 :REELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQG Number of specific fragments extracted= 6 number of extra gaps= 0 total=684 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_980775698.pdb -s /var/tmp/to_scwrl_980775698.seq -o /var/tmp/from_scwrl_980775698.pdb > /var/tmp/scwrl_980775698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_980775698.pdb Number of alignments=82 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 52 :PYTTATNI 1ci0A 70 :VSSRILLF T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 79 :ELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKAKLYLS 1ci0A 132 :TSERYFKTRPRGSKIGA T0506 139 :LPDTR 1ci0A 153 :QSDVI T0506 191 :LNAIKGEASRLAVLAGAK 1ci0A 158 :KNREELDELTQKNTERFK T0506 209 :TGRWKITSIDPDGIDL 1ci0A 183 :PDYWGGLRIVPLEIEF Number of specific fragments extracted= 7 number of extra gaps= 0 total=691 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1255839184.pdb -s /var/tmp/to_scwrl_1255839184.seq -o /var/tmp/from_scwrl_1255839184.pdb > /var/tmp/scwrl_1255839184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1255839184.pdb Number of alignments=83 # 1ci0A read from all-align.a2m # found chain 1ci0A in template set T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ci0A 75 :LLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQ T0506 103 :PRLTLVGRADRIGPD 1ci0A 117 :RQVRVEGITEHVNRE T0506 122 :AIARYIARYPKA 1ci0A 132 :TSERYFKTRPRG Number of specific fragments extracted= 3 number of extra gaps= 0 total=694 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1965852401.pdb -s /var/tmp/to_scwrl_1965852401.seq -o /var/tmp/from_scwrl_1965852401.pdb > /var/tmp/scwrl_1965852401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1965852401.pdb Number of alignments=84 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P219 because last residue in template chain is (1dnlA)P218 T0506 10 :TPRGTKIEPSA 1dnlA 21 :GLRRRDLPADP T0506 21 :GAPFEAVRVARD 1dnlA 33 :TLFERWLSQACE T0506 34 :LHTSRTAALATLDP 1dnlA 47 :LADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDG 1dnlA 61 :HGQPYQRIVLLKHYDEK T0506 67 :PFFFAAG 1dnlA 78 :GMVFYTN T0506 74 :LTLHARNMETDARISVTLAP 1dnlA 86 :GSRKAHQIENNPRVSLLFPW T0506 104 :RLTLVGRADRIGPDE 1dnlA 111 :QVMVIGKAERLSTLE T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLR 1dnlA 126 :VMKYFHSRPRDSQIGAWVSKQSSRISARG T0506 149 :TEGVQINGGPAR 1dnlA 157 :ESKFLELKQKFQ T0506 162 :ASNITPADLRTDLSGAEELMAAAESEATRLN 1dnlA 169 :QGEVPLPSFWGGFRVSLEQIEFWQGGEHRLH T0506 199 :SRLAVLAG 1dnlA 200 :DRFLYQRE T0506 209 :TGRWKITSID 1dnlA 208 :NDAWKIDRLA Number of specific fragments extracted= 12 number of extra gaps= 0 total=706 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_738859198.pdb -s /var/tmp/to_scwrl_738859198.seq -o /var/tmp/from_scwrl_738859198.pdb > /var/tmp/scwrl_738859198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738859198.pdb Number of alignments=85 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 38 :RTAALATLDP 1dnlA 51 :TAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDG 1dnlA 61 :HGQPYQRIVLLKHYDEK T0506 67 :PFFFAAG 1dnlA 78 :GMVFYTN T0506 74 :LTLHARNMETDARISVTLAP 1dnlA 86 :GSRKAHQIENNPRVSLLFPW T0506 101 :T 1dnlA 107 :T T0506 102 :LPRLTLVGRADRIGPDE 1dnlA 109 :ERQVMVIGKAERLSTLE T0506 120 :PLAIARYIARYPKAKLYLSL 1dnlA 126 :VMKYFHSRPRDSQIGAWVSK Number of specific fragments extracted= 7 number of extra gaps= 0 total=713 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1590570735.pdb -s /var/tmp/to_scwrl_1590570735.seq -o /var/tmp/from_scwrl_1590570735.pdb > /var/tmp/scwrl_1590570735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590570735.pdb Number of alignments=86 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDP 1dnlA 21 :GLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGPDEV 1dnlA 111 :QVMVIGKAERLSTLEV T0506 121 :LAIARYIARYPKAKLYLSLPDTR 1dnlA 127 :MKYFHSRPRDSQIGAWVSKQSSR T0506 239 :VETLKQFEKALAQLLK 1dnlA 150 :ISARGILESKFLELKQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=718 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2080932181.pdb -s /var/tmp/to_scwrl_2080932181.seq -o /var/tmp/from_scwrl_2080932181.pdb > /var/tmp/scwrl_2080932181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080932181.pdb Number of alignments=87 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDP 1dnlA 21 :GLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGPDEV 1dnlA 111 :QVMVIGKAERLSTLEV T0506 124 :ARYIARYPKAKLYLSLP 1dnlA 127 :MKYFHSRPRDSQIGAWV T0506 141 :DT 1dnlA 147 :SS T0506 239 :VETLKQFEKALAQ 1dnlA 150 :ISARGILESKFLE T0506 252 :LLK 1dnlA 216 :LAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=725 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_128295681.pdb -s /var/tmp/to_scwrl_128295681.seq -o /var/tmp/from_scwrl_128295681.pdb > /var/tmp/scwrl_128295681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_128295681.pdb Number of alignments=88 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 31 :RDVLHTSRTAALATLDP 1dnlA 44 :EAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGPDEV 1dnlA 111 :QVMVIGKAERLSTLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=728 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_145270846.pdb -s /var/tmp/to_scwrl_145270846.seq -o /var/tmp/from_scwrl_145270846.pdb > /var/tmp/scwrl_145270846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_145270846.pdb Number of alignments=89 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 30 :ARDVLHTSRTAALATLDP 1dnlA 43 :CEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGPDEV 1dnlA 111 :QVMVIGKAERLSTLEV T0506 124 :ARYIARYPKAKLY 1dnlA 127 :MKYFHSRPRDSQI Number of specific fragments extracted= 4 number of extra gaps= 0 total=732 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_689193892.pdb -s /var/tmp/to_scwrl_689193892.seq -o /var/tmp/from_scwrl_689193892.pdb > /var/tmp/scwrl_689193892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_689193892.pdb Number of alignments=90 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1dnlA 21 :GLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVD T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 60 :EHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1dnlA 110 :RQVMVIGKAERLSTLEV T0506 158 :PARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAER 1dnlA 127 :MKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRE T0506 244 :QFEKALAQLLK 1dnlA 208 :NDAWKIDRLAP Number of specific fragments extracted= 5 number of extra gaps= 0 total=737 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1769678279.pdb -s /var/tmp/to_scwrl_1769678279.seq -o /var/tmp/from_scwrl_1769678279.pdb > /var/tmp/scwrl_1769678279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1769678279.pdb Number of alignments=91 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 1 :MLDVAPPVITPRGT 1dnlA 21 :GLRRRDLPADPLTL T0506 19 :SAGAPFEAVRV 1dnlA 35 :FERWLSQACEA T0506 33 :VLHTSRTAALATLDP 1dnlA 46 :KLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1dnlA 110 :RQVMVIGKAERLSTLEV T0506 142 :TRLYRLRTEGVQINGGPARNASNI 1dnlA 127 :MKYFHSRPRDSQIGAWVSKQSSRI T0506 175 :SGAEELMAAAESEATRL 1dnlA 151 :SARGILESKFLELKQKF T0506 193 :AIKG 1dnlA 168 :QQGE T0506 206 :GAKTGRWKITSIDPDGIDLA 1dnlA 172 :VPLPSFWGGFRVSLEQIEFW T0506 226 :SASDLARLWFAER 1dnlA 195 :EHRLHDRFLYQRE T0506 244 :QFEKALAQLLK 1dnlA 208 :NDAWKIDRLAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=748 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1151017543.pdb -s /var/tmp/to_scwrl_1151017543.seq -o /var/tmp/from_scwrl_1151017543.pdb > /var/tmp/scwrl_1151017543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1151017543.pdb Number of alignments=92 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P219 because last residue in template chain is (1dnlA)P218 T0506 210 :GRWKITSID 1dnlA 209 :DAWKIDRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=749 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 36 :TSRTAALATLDP 1dnlA 49 :DPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1dnlA 110 :RQVMVIGKAERLSTLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=752 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_144651593.pdb -s /var/tmp/to_scwrl_144651593.seq -o /var/tmp/from_scwrl_144651593.pdb > /var/tmp/scwrl_144651593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_144651593.pdb Number of alignments=93 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 104 :RLTLVGRADRIGPDEV 1dnlA 111 :QVMVIGKAERLSTLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=753 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFP T0506 94 :F 1dnlA 105 :W T0506 100 :LTLPR 1dnlA 106 :HTLER T0506 105 :LTLVGRADRIGPDEV 1dnlA 112 :VMVIGKAERLSTLEV T0506 124 :ARYIA 1dnlA 127 :MKYFH Number of specific fragments extracted= 5 number of extra gaps= 0 total=758 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1776160021.pdb -s /var/tmp/to_scwrl_1776160021.seq -o /var/tmp/from_scwrl_1776160021.pdb > /var/tmp/scwrl_1776160021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776160021.pdb Number of alignments=94 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=767 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_112670206.pdb -s /var/tmp/to_scwrl_112670206.seq -o /var/tmp/from_scwrl_112670206.pdb > /var/tmp/scwrl_112670206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_112670206.pdb Number of alignments=95 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=776 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1228901413.pdb -s /var/tmp/to_scwrl_1228901413.seq -o /var/tmp/from_scwrl_1228901413.pdb > /var/tmp/scwrl_1228901413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228901413.pdb Number of alignments=96 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=785 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_568900730.pdb -s /var/tmp/to_scwrl_568900730.seq -o /var/tmp/from_scwrl_568900730.pdb > /var/tmp/scwrl_568900730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_568900730.pdb Number of alignments=97 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)P219 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITP 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFL T0506 205 :AGAKTGRWKITSID 1dnlA 204 :YQRENDAWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=795 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_245680183.pdb -s /var/tmp/to_scwrl_245680183.seq -o /var/tmp/from_scwrl_245680183.pdb > /var/tmp/scwrl_245680183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_245680183.pdb Number of alignments=98 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITP 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFL T0506 227 :ASDLARLW 1dnlA 210 :AWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=805 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1832515473.pdb -s /var/tmp/to_scwrl_1832515473.seq -o /var/tmp/from_scwrl_1832515473.pdb > /var/tmp/scwrl_1832515473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1832515473.pdb Number of alignments=99 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR T0506 213 :KITSIDPDGIDLAS 1dnlA 202 :FLYQRENDAWKIDR Number of specific fragments extracted= 10 number of extra gaps= 0 total=815 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_472099632.pdb -s /var/tmp/to_scwrl_472099632.seq -o /var/tmp/from_scwrl_472099632.pdb > /var/tmp/scwrl_472099632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_472099632.pdb Number of alignments=100 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)P219 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITP 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFL T0506 205 :AGAKTGRWKITSID 1dnlA 204 :YQRENDAWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=825 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1568848869.pdb -s /var/tmp/to_scwrl_1568848869.seq -o /var/tmp/from_scwrl_1568848869.pdb > /var/tmp/scwrl_1568848869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1568848869.pdb Number of alignments=101 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=834 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1942680832.pdb -s /var/tmp/to_scwrl_1942680832.seq -o /var/tmp/from_scwrl_1942680832.pdb > /var/tmp/scwrl_1942680832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1942680832.pdb Number of alignments=102 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)E237 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1dnlA 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD T0506 223 :DLAS 1dnlA 201 :RFLY T0506 227 :ASDLARLW 1dnlA 210 :AWKIDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=845 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_49824579.pdb -s /var/tmp/to_scwrl_49824579.seq -o /var/tmp/from_scwrl_49824579.pdb > /var/tmp/scwrl_49824579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49824579.pdb Number of alignments=103 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)E237 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 23 :PFEAVRVARDV 1dnlA 35 :FERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1dnlA 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFH T0506 128 :A 1dnlA 132 :S T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD T0506 223 :DLAS 1dnlA 201 :RFLY T0506 227 :ASDLARLWFA 1dnlA 208 :NDAWKIDRLA Number of specific fragments extracted= 12 number of extra gaps= 0 total=857 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1318135752.pdb -s /var/tmp/to_scwrl_1318135752.seq -o /var/tmp/from_scwrl_1318135752.pdb > /var/tmp/scwrl_1318135752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1318135752.pdb Number of alignments=104 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNIT 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRF T0506 225 :AS 1dnlA 203 :LY T0506 227 :ASDLARLW 1dnlA 210 :AWKIDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=868 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1686743753.pdb -s /var/tmp/to_scwrl_1686743753.seq -o /var/tmp/from_scwrl_1686743753.pdb > /var/tmp/scwrl_1686743753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686743753.pdb Number of alignments=105 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNAS 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLH T0506 211 :RWKITSIDPDGIDLAS 1dnlA 200 :DRFLYQRENDAWKIDR Number of specific fragments extracted= 10 number of extra gaps= 0 total=878 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_380987488.pdb -s /var/tmp/to_scwrl_380987488.seq -o /var/tmp/from_scwrl_380987488.pdb > /var/tmp/scwrl_380987488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_380987488.pdb Number of alignments=106 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSG 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWK Number of specific fragments extracted= 9 number of extra gaps= 0 total=887 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1849548383.pdb -s /var/tmp/to_scwrl_1849548383.seq -o /var/tmp/from_scwrl_1849548383.pdb > /var/tmp/scwrl_1849548383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1849548383.pdb Number of alignments=107 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1dnlA)P218 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=896 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1700428641.pdb -s /var/tmp/to_scwrl_1700428641.seq -o /var/tmp/from_scwrl_1700428641.pdb > /var/tmp/scwrl_1700428641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700428641.pdb Number of alignments=108 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLS 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAW Number of specific fragments extracted= 9 number of extra gaps= 0 total=905 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2090466638.pdb -s /var/tmp/to_scwrl_2090466638.seq -o /var/tmp/from_scwrl_2090466638.pdb > /var/tmp/scwrl_2090466638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2090466638.pdb Number of alignments=109 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=914 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_693635446.pdb -s /var/tmp/to_scwrl_693635446.seq -o /var/tmp/from_scwrl_693635446.pdb > /var/tmp/scwrl_693635446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_693635446.pdb Number of alignments=110 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=923 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_386830160.pdb -s /var/tmp/to_scwrl_386830160.seq -o /var/tmp/from_scwrl_386830160.pdb > /var/tmp/scwrl_386830160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_386830160.pdb Number of alignments=111 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=932 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_515875194.pdb -s /var/tmp/to_scwrl_515875194.seq -o /var/tmp/from_scwrl_515875194.pdb > /var/tmp/scwrl_515875194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_515875194.pdb Number of alignments=112 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=941 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1674411143.pdb -s /var/tmp/to_scwrl_1674411143.seq -o /var/tmp/from_scwrl_1674411143.pdb > /var/tmp/scwrl_1674411143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1674411143.pdb Number of alignments=113 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=950 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1642669345.pdb -s /var/tmp/to_scwrl_1642669345.seq -o /var/tmp/from_scwrl_1642669345.pdb > /var/tmp/scwrl_1642669345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642669345.pdb Number of alignments=114 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1dnlA 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=959 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_334243948.pdb -s /var/tmp/to_scwrl_334243948.seq -o /var/tmp/from_scwrl_334243948.pdb > /var/tmp/scwrl_334243948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334243948.pdb Number of alignments=115 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 23 :PFEAVRVARDV 1dnlA 35 :FERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1dnlA 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFH T0506 128 :A 1dnlA 132 :S T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNAS 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLH Number of specific fragments extracted= 10 number of extra gaps= 0 total=969 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_265786694.pdb -s /var/tmp/to_scwrl_265786694.seq -o /var/tmp/from_scwrl_265786694.pdb > /var/tmp/scwrl_265786694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265786694.pdb Number of alignments=116 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=978 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1085756433.pdb -s /var/tmp/to_scwrl_1085756433.seq -o /var/tmp/from_scwrl_1085756433.pdb > /var/tmp/scwrl_1085756433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1085756433.pdb Number of alignments=117 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1dnlA)G20 T0506 8 :VITPRGTKIEP 1dnlA 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1dnlA 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1dnlA 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1dnlA 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1dnlA 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1dnlA 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1dnlA 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1dnlA 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=987 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_267692482.pdb -s /var/tmp/to_scwrl_267692482.seq -o /var/tmp/from_scwrl_267692482.pdb > /var/tmp/scwrl_267692482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_267692482.pdb Number of alignments=118 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :VAPPVITPR 1dnlA 21 :GLRRRDLPA T0506 13 :GTKIEPSAGAPFEAVRV 1dnlA 37 :RWLSQACEAKLADPTAM T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLSLPDTR 1dnlA 126 :VMKYFHSRPRDSQIGAWVSKQS T0506 162 :ASNITPADLRTDLSGAEELMAA 1dnlA 148 :SRISARGILESKFLELKQKFQQ T0506 205 :AG 1dnlA 170 :GE T0506 209 :TGRWKITSIDPDGIDLASASDLAR 1dnlA 175 :PSFWGGFRVSLEQIEFWQGGEHRL T0506 234 :WFAERVETLKQFE 1dnlA 199 :HDRFLYQRENDAW T0506 248 :ALAQLLK 1dnlA 212 :KIDRLAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=998 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_394082376.pdb -s /var/tmp/to_scwrl_394082376.seq -o /var/tmp/from_scwrl_394082376.pdb > /var/tmp/scwrl_394082376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_394082376.pdb Number of alignments=119 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :VAPPVITPRGTKIEPSAGAPFEAVRV 1dnlA 21 :GLRRRDLPADPLTLFERWLSQACEAK T0506 34 :LHTSRTAALATLDP 1dnlA 47 :LADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGP 1dnlA 110 :RQVMVIGKAERLST T0506 120 :PLAIARYIARYPKAKLYLSL 1dnlA 124 :LEVMKYFHSRPRDSQIGAWV T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLAGAK 1dnlA 144 :SKQSSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVETLKQF 1dnlA 175 :PSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAW T0506 248 :ALAQLLK 1dnlA 212 :KIDRLAP Number of specific fragments extracted= 8 number of extra gaps= 0 total=1006 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1231027279.pdb -s /var/tmp/to_scwrl_1231027279.seq -o /var/tmp/from_scwrl_1231027279.pdb > /var/tmp/scwrl_1231027279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1231027279.pdb Number of alignments=120 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :VAPPVITPRGTKIEPSAGAP 1dnlA 21 :GLRRRDLPADPLTLFERWLS T0506 26 :AVRVAR 1dnlA 41 :QACEAK T0506 34 :LHTSRTAALATLDP 1dnlA 47 :LADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLSLPD 1dnlA 126 :VMKYFHSRPRDSQIGAWVSK T0506 181 :MAAAESEATRLNAIKGEASRLAVLAGAK 1dnlA 146 :QSSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDG 1dnlA 175 :PSFWGGFRVSLEQ T0506 224 :LASASDLARLWFAERVETLKQFEKALAQLLK 1dnlA 188 :IEFWQGGEHRLHDRFLYQRENDAWKIDRLAP Number of specific fragments extracted= 9 number of extra gaps= 0 total=1015 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_956886374.pdb -s /var/tmp/to_scwrl_956886374.seq -o /var/tmp/from_scwrl_956886374.pdb > /var/tmp/scwrl_956886374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_956886374.pdb Number of alignments=121 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :VA 1dnlA 21 :GL T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALA 1dnlA 23 :RRRDLPADPLTLFERWLSQACEAKLA T0506 46 :D 1dnlA 51 :T T0506 47 :PVSGYPYTTATNI 1dnlA 59 :DEHGQPYQRIVLL T0506 60 :GIEPDGT 1dnlA 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGP 1dnlA 110 :RQVMVIGKAERLST T0506 120 :PLAIARYIARYPKAKLYLS 1dnlA 124 :LEVMKYFHSRPRDSQIGAW T0506 162 :ASNITPADL 1dnlA 148 :SRISARGIL T0506 197 :EASRLAVLAGA 1dnlA 157 :ESKFLELKQKF T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVET 1dnlA 185 :LEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1026 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_16277008.pdb -s /var/tmp/to_scwrl_16277008.seq -o /var/tmp/from_scwrl_16277008.pdb > /var/tmp/scwrl_16277008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16277008.pdb Number of alignments=122 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)P219 because last residue in template chain is (1dnlA)P218 T0506 4 :V 1dnlA 21 :G T0506 16 :IEPSAGAPFEAVRVARDVLHTSRT 1dnlA 22 :LRRRDLPADPLTLFERWLSQACEA T0506 40 :AALATLDP 1dnlA 53 :MVVATVDE T0506 49 :SGYPYTTATNI 1dnlA 61 :HGQPYQRIVLL T0506 60 :GIEPDGT 1dnlA 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 121 :LAIARYIARYPKAKLYLS 1dnlA 151 :SARGILESKFLELKQKFQ T0506 139 :LPDTRLYRLRTEGVQINGG 1dnlA 175 :PSFWGGFRVSLEQIEFWQG T0506 159 :AR 1dnlA 194 :GE T0506 162 :ASNITPAD 1dnlA 196 :HRLHDRFL T0506 209 :TGRWKITSID 1dnlA 208 :NDAWKIDRLA Number of specific fragments extracted= 12 number of extra gaps= 0 total=1038 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_234561176.pdb -s /var/tmp/to_scwrl_234561176.seq -o /var/tmp/from_scwrl_234561176.pdb > /var/tmp/scwrl_234561176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_234561176.pdb Number of alignments=123 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :V 1dnlA 21 :G T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 1dnlA 22 :LRRRDLPADPLTLFERWLSQACEA T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLS 1dnlA 126 :VMKYFHSRPRDSQIGAW T0506 140 :P 1dnlA 146 :Q T0506 182 :AAAESEATRLNAIKGEASRLAVLAGAK 1dnlA 147 :SSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1dnlA 175 :PSFWGGFRVSLEQIEFWQGGEHR T0506 232 :RLWFAERVE 1dnlA 202 :FLYQRENDA T0506 252 :LLK 1dnlA 216 :LAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=1049 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1101537966.pdb -s /var/tmp/to_scwrl_1101537966.seq -o /var/tmp/from_scwrl_1101537966.pdb > /var/tmp/scwrl_1101537966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101537966.pdb Number of alignments=124 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :VAP 1dnlA 21 :GLR T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1dnlA 24 :RRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPD 1dnlA 110 :RQVMVIGKAERLSTL T0506 121 :LAIARYIARYPKAKLYLSLPDTR 1dnlA 125 :EVMKYFHSRPRDSQIGAWVSKQS T0506 183 :AAESEATRLNAIKGEASRLAVLAGAK 1dnlA 148 :SRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASAS 1dnlA 175 :PSFWGGFRVSLEQIEFWQGG T0506 229 :DLARLWFAERVETL 1dnlA 199 :HDRFLYQRENDAWK T0506 249 :LAQLLK 1dnlA 213 :IDRLAP Number of specific fragments extracted= 9 number of extra gaps= 0 total=1058 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1792437029.pdb -s /var/tmp/to_scwrl_1792437029.seq -o /var/tmp/from_scwrl_1792437029.pdb > /var/tmp/scwrl_1792437029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1792437029.pdb Number of alignments=125 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :VAPPVITP 1dnlA 21 :GLRRRDLP T0506 24 :FEAVRVARDVLHTSRTAAL 1dnlA 29 :ADPLTLFERWLSQACEAKL T0506 43 :ATLDP 1dnlA 56 :ATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLSLPDT 1dnlA 126 :VMKYFHSRPRDSQIGAWVSKQ T0506 161 :NASNITPADLRTDL 1dnlA 147 :SSRISARGILESKF T0506 196 :GEASRLAVLAGAK 1dnlA 161 :LELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVETLKQF 1dnlA 175 :PSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAW T0506 248 :ALAQLLK 1dnlA 212 :KIDRLAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=1068 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_347231382.pdb -s /var/tmp/to_scwrl_347231382.seq -o /var/tmp/from_scwrl_347231382.pdb > /var/tmp/scwrl_347231382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347231382.pdb Number of alignments=126 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)K15 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)V239 because last residue in template chain is (1dnlA)P218 T0506 16 :IEPSAGAPFEAVRVARDVLHTS 1dnlA 21 :GLRRRDLPADPLTLFERWLSQA T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 119 :VPLAIARYI 1dnlA 135 :RDSQIGAWV T0506 128 :ARYPKAKLYLS 1dnlA 158 :SKFLELKQKFQ T0506 139 :LPDTRLYRLRTEGVQINGG 1dnlA 175 :PSFWGGFRVSLEQIEFWQG T0506 166 :TPADL 1dnlA 194 :GEHRL T0506 178 :E 1dnlA 199 :H T0506 211 :R 1dnlA 200 :D T0506 222 :IDLASASDLARLWFAER 1dnlA 201 :RFLYQRENDAWKIDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1079 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_182955733.pdb -s /var/tmp/to_scwrl_182955733.seq -o /var/tmp/from_scwrl_182955733.pdb > /var/tmp/scwrl_182955733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_182955733.pdb Number of alignments=127 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)K15 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)E237 because last residue in template chain is (1dnlA)P218 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRT 1dnlA 21 :GLRRRDLPADPLTLFERWLSQACE T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFP T0506 98 :DALTLPRLTLVGRADRIGPDE 1dnlA 105 :WHTLERQVMVIGKAERLSTLE T0506 122 :AIARYIARYPK 1dnlA 126 :VMKYFHSRPRD T0506 135 :LYLS 1dnlA 141 :AWVS T0506 169 :DLRTDLSGAEELMAAAESEATRLNA 1dnlA 145 :KQSSRISARGILESKFLELKQKFQQ T0506 208 :K 1dnlA 170 :G T0506 209 :TGRWKITSIDPDGIDLAS 1dnlA 175 :PSFWGGFRVSLEQIEFWQ T0506 227 :ASDLARLWFA 1dnlA 208 :NDAWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1089 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_213854112.pdb -s /var/tmp/to_scwrl_213854112.seq -o /var/tmp/from_scwrl_213854112.pdb > /var/tmp/scwrl_213854112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_213854112.pdb Number of alignments=128 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)K15 because first residue in template chain is (1dnlA)G20 Warning: unaligning (T0506)V239 because last residue in template chain is (1dnlA)P218 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 1dnlA 21 :GLRRRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLS 1dnlA 126 :VMKYFHSRPRDSQIGAW T0506 141 :D 1dnlA 147 :S T0506 172 :TDLS 1dnlA 148 :SRIS T0506 187 :EATRLN 1dnlA 152 :ARGILE T0506 196 :GEASRLAVLAGAK 1dnlA 158 :SKFLELKQKFQQG T0506 209 :TGRWKITSIDPDGIDLASAS 1dnlA 175 :PSFWGGFRVSLEQIEFWQGG T0506 229 :DLARLWFAER 1dnlA 208 :NDAWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1099 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_592911565.pdb -s /var/tmp/to_scwrl_592911565.seq -o /var/tmp/from_scwrl_592911565.pdb > /var/tmp/scwrl_592911565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_592911565.pdb Number of alignments=129 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1dnlA)G20 T0506 4 :VAPPVITP 1dnlA 21 :GLRRRDLP T0506 23 :PFEAVRVARDVLHTS 1dnlA 29 :ADPLTLFERWLSQAC T0506 39 :TA 1dnlA 44 :EA T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPD 1dnlA 110 :RQVMVIGKAERLSTL T0506 121 :LAIARYIARYPKAKLYL 1dnlA 125 :EVMKYFHSRPRDSQIGA T0506 169 :DLRTD 1dnlA 142 :WVSKQ T0506 182 :AAAESEATRLNAIKGEASRLAVLAGAK 1dnlA 147 :SSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1dnlA 175 :PSFWGGFRVSLEQIEFWQGGEHR T0506 232 :RLWFAER 1dnlA 202 :FLYQREN T0506 252 :LLK 1dnlA 216 :LAP Number of specific fragments extracted= 12 number of extra gaps= 0 total=1111 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2015471206.pdb -s /var/tmp/to_scwrl_2015471206.seq -o /var/tmp/from_scwrl_2015471206.pdb > /var/tmp/scwrl_2015471206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015471206.pdb Number of alignments=130 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYI 1dnlA 126 :VMKYFH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1115 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_685953745.pdb -s /var/tmp/to_scwrl_685953745.seq -o /var/tmp/from_scwrl_685953745.pdb > /var/tmp/scwrl_685953745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_685953745.pdb Number of alignments=131 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIG 1dnlA 110 :RQVMVIGKAERLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1118 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_14276787.pdb -s /var/tmp/to_scwrl_14276787.seq -o /var/tmp/from_scwrl_14276787.pdb > /var/tmp/scwrl_14276787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_14276787.pdb Number of alignments=132 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE Number of specific fragments extracted= 3 number of extra gaps= 0 total=1121 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1810668392.pdb -s /var/tmp/to_scwrl_1810668392.seq -o /var/tmp/from_scwrl_1810668392.pdb > /var/tmp/scwrl_1810668392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1810668392.pdb Number of alignments=133 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNI 1dnlA 61 :HGQPYQRIVLL T0506 60 :GIEPDGT 1dnlA 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYP 1dnlA 126 :VMKYFHSRPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=1127 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_735778324.pdb -s /var/tmp/to_scwrl_735778324.seq -o /var/tmp/from_scwrl_735778324.pdb > /var/tmp/scwrl_735778324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735778324.pdb Number of alignments=134 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNI 1dnlA 61 :HGQPYQRIVLL T0506 60 :GIEPDGT 1dnlA 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1dnlA 110 :RQVMVIGKAERLSTLEV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1132 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1332412540.pdb -s /var/tmp/to_scwrl_1332412540.seq -o /var/tmp/from_scwrl_1332412540.pdb > /var/tmp/scwrl_1332412540.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332412540.pdb Number of alignments=135 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIAR 1dnlA 126 :VMKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=1136 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1349928498.pdb -s /var/tmp/to_scwrl_1349928498.seq -o /var/tmp/from_scwrl_1349928498.pdb > /var/tmp/scwrl_1349928498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349928498.pdb Number of alignments=136 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIAR 1dnlA 126 :VMKYFHSR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1140 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1116765811.pdb -s /var/tmp/to_scwrl_1116765811.seq -o /var/tmp/from_scwrl_1116765811.pdb > /var/tmp/scwrl_1116765811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1116765811.pdb Number of alignments=137 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 42 :LATLDP 1dnlA 55 :VATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIAR 1dnlA 126 :VMKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=1144 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1034477277.pdb -s /var/tmp/to_scwrl_1034477277.seq -o /var/tmp/from_scwrl_1034477277.pdb > /var/tmp/scwrl_1034477277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1034477277.pdb Number of alignments=138 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 18 :PSAGAPFEAVRVARDVLHTS 1dnlA 23 :RRRDLPADPLTLFERWLSQA T0506 38 :RTAALATLDP 1dnlA 51 :TAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLS 1dnlA 126 :VMKYFHSRPRDSQIGAW T0506 170 :LRTDLSGAEELMAAAESE 1dnlA 146 :QSSRISARGILESKFLEL T0506 202 :AVLAGAK 1dnlA 164 :KQKFQQG T0506 209 :TGRWKITSIDPDGIDLASASD 1dnlA 175 :PSFWGGFRVSLEQIEFWQGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=1152 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_902873493.pdb -s /var/tmp/to_scwrl_902873493.seq -o /var/tmp/from_scwrl_902873493.pdb > /var/tmp/scwrl_902873493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902873493.pdb Number of alignments=139 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 16 :IEPSAGAPFEAVRVARDVLHTSRT 1dnlA 21 :GLRRRDLPADPLTLFERWLSQACE T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFP T0506 98 :DALTLPRLTLVGRADRIGPDE 1dnlA 105 :WHTLERQVMVIGKAERLSTLE T0506 122 :AIARYIARYPK 1dnlA 126 :VMKYFHSRPRD T0506 135 :LYLS 1dnlA 141 :AWVS T0506 169 :DLRTDLSGAEELMAAAESEATRLNA 1dnlA 145 :KQSSRISARGILESKFLELKQKFQQ T0506 208 :K 1dnlA 170 :G T0506 209 :TGRWKITSIDPDGIDLASAS 1dnlA 175 :PSFWGGFRVSLEQIEFWQGG Number of specific fragments extracted= 9 number of extra gaps= 0 total=1161 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1059748803.pdb -s /var/tmp/to_scwrl_1059748803.seq -o /var/tmp/from_scwrl_1059748803.pdb > /var/tmp/scwrl_1059748803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1059748803.pdb Number of alignments=140 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AIARY 1dnlA 126 :VMKYF Number of specific fragments extracted= 4 number of extra gaps= 0 total=1165 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1728112722.pdb -s /var/tmp/to_scwrl_1728112722.seq -o /var/tmp/from_scwrl_1728112722.pdb > /var/tmp/scwrl_1728112722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728112722.pdb Number of alignments=141 # 1dnlA read from all-align.a2m # found chain 1dnlA in training set T0506 41 :ALATLDP 1dnlA 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1dnlA 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1dnlA 110 :RQVMVIGKAERLSTLE T0506 122 :AI 1dnlA 126 :VM Number of specific fragments extracted= 4 number of extra gaps= 0 total=1169 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1289703653.pdb -s /var/tmp/to_scwrl_1289703653.seq -o /var/tmp/from_scwrl_1289703653.pdb > /var/tmp/scwrl_1289703653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1289703653.pdb Number of alignments=142 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)L174 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLDP 1flmA 2 :LPGTFFEVLKNEGVVAIATQGE T0506 50 :GYPYTTATN 1flmA 25 :GPHLVNTWN T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKV T0506 97 :GDALTLPRLTLVGRADRIGPDEVPLAIARYI 1flmA 75 :GRNGPGTGFLIRGSAAFRTDGPEFEAIARFK T0506 164 :NITPADLRTD 1flmA 112 :VITVVSAEQT Number of specific fragments extracted= 5 number of extra gaps= 0 total=1174 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1575623996.pdb -s /var/tmp/to_scwrl_1575623996.seq -o /var/tmp/from_scwrl_1575623996.pdb > /var/tmp/scwrl_1575623996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1575623996.pdb Number of alignments=143 # 1flmA read from all-align.a2m # found chain 1flmA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1174 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)R146 because last residue in template chain is (1flmA)L122 T0506 1 :MLD 1flmA 1 :MLP T0506 28 :RVARDVLHTSRTAALATLDPVSGYPYTT 1flmA 4 :GTFFEVLKNEGVVAIATQGEDGPHLVNT T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPR 1flmA 33 :NSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGT T0506 105 :LTLVGRADRIGPDEVPLAIARY 1flmA 83 :FLIRGSAAFRTDGPEFEAIARF T0506 129 :RYPKAKLYLSLPDTRLY 1flmA 105 :KWARAALVITVVSAEQT Number of specific fragments extracted= 5 number of extra gaps= 0 total=1179 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1255040219.pdb -s /var/tmp/to_scwrl_1255040219.seq -o /var/tmp/from_scwrl_1255040219.pdb > /var/tmp/scwrl_1255040219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1255040219.pdb Number of alignments=144 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 1 :MLD 1flmA 1 :MLP T0506 31 :RDVLHTSRTAALATLDPVSGYPY 1flmA 7 :FEVLKNEGVVAIATQGEDGPHLV T0506 54 :TTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1flmA 31 :TWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKV T0506 97 :GDALTLPRLTLVGRADRIGPDEVPLAIA 1flmA 75 :GRNGPGTGFLIRGSAAFRTDGPEFEAIA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1183 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_784889352.pdb -s /var/tmp/to_scwrl_784889352.seq -o /var/tmp/from_scwrl_784889352.pdb > /var/tmp/scwrl_784889352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784889352.pdb Number of alignments=145 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1184 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1909867944.pdb -s /var/tmp/to_scwrl_1909867944.seq -o /var/tmp/from_scwrl_1909867944.pdb > /var/tmp/scwrl_1909867944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909867944.pdb Number of alignments=146 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 33 :VLHTSRTAALATLDPVSGYPY 1flmA 9 :VLKNEGVVAIATQGEDGPHLV T0506 54 :TTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 31 :TWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1186 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1520826913.pdb -s /var/tmp/to_scwrl_1520826913.seq -o /var/tmp/from_scwrl_1520826913.pdb > /var/tmp/scwrl_1520826913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1520826913.pdb Number of alignments=147 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 1 :MLD 1flmA 1 :MLP T0506 28 :RVARDVLHTSRTAALATLDPVSGYPYTTATN 1flmA 4 :GTFFEVLKNEGVVAIATQGEDGPHLVNTWNS T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARY 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDGPEFEAIARF T0506 129 :RYPKAKLYLSLPDTRLY 1flmA 105 :KWARAALVITVVSAEQT Number of specific fragments extracted= 5 number of extra gaps= 0 total=1191 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1870645785.pdb -s /var/tmp/to_scwrl_1870645785.seq -o /var/tmp/from_scwrl_1870645785.pdb > /var/tmp/scwrl_1870645785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870645785.pdb Number of alignments=148 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 1 :MLD 1flmA 1 :MLP T0506 31 :RDVLHTSRTAALATLDPVSGYPY 1flmA 7 :FEVLKNEGVVAIATQGEDGPHLV T0506 54 :TTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 31 :TWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAI 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDGPEFEAI T0506 128 :ARYPKAKLYLSLPDTRLYR 1flmA 102 :ARFKWARAALVITVVSAEQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1196 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_30076779.pdb -s /var/tmp/to_scwrl_30076779.seq -o /var/tmp/from_scwrl_30076779.pdb > /var/tmp/scwrl_30076779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30076779.pdb Number of alignments=149 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1197 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1914909289.pdb -s /var/tmp/to_scwrl_1914909289.seq -o /var/tmp/from_scwrl_1914909289.pdb > /var/tmp/scwrl_1914909289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914909289.pdb Number of alignments=150 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 32 :DVLHTSRTAALATLDPVSGYPY 1flmA 8 :EVLKNEGVVAIATQGEDGPHLV T0506 54 :TTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 31 :TWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1199 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_954189418.pdb -s /var/tmp/to_scwrl_954189418.seq -o /var/tmp/from_scwrl_954189418.pdb > /var/tmp/scwrl_954189418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_954189418.pdb Number of alignments=151 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 139 :LPDTRLYRLRTEGV 1flmA 2 :LPGTFFEVLKNEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1200 # 1flmA read from all-align.a2m # found chain 1flmA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1200 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)R171 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIARY 1flmA 96 :PEFEAIARFK T0506 132 :KAK 1flmA 106 :WAR T0506 139 :L 1flmA 109 :A T0506 144 :LYRLRTEGVQ 1flmA 110 :ALVITVVSAE T0506 169 :DL 1flmA 120 :QT Number of specific fragments extracted= 11 number of extra gaps= 0 total=1211 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_986963154.pdb -s /var/tmp/to_scwrl_986963154.seq -o /var/tmp/from_scwrl_986963154.pdb > /var/tmp/scwrl_986963154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986963154.pdb Number of alignments=152 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIARYIARY 1flmA 96 :PEFEAIARFKWARA T0506 144 :LYRLRTEGVQIN 1flmA 110 :ALVITVVSAEQT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1219 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1931186297.pdb -s /var/tmp/to_scwrl_1931186297.seq -o /var/tmp/from_scwrl_1931186297.pdb > /var/tmp/scwrl_1931186297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931186297.pdb Number of alignments=153 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIARYIARY 1flmA 96 :PEFEAIARFKWARA T0506 144 :LYRLRTEGVQIN 1flmA 110 :ALVITVVSAEQT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1227 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1188750594.pdb -s /var/tmp/to_scwrl_1188750594.seq -o /var/tmp/from_scwrl_1188750594.pdb > /var/tmp/scwrl_1188750594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188750594.pdb Number of alignments=154 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIA 1flmA 96 :PEFEAIAR T0506 130 :YPKA 1flmA 104 :FKWA T0506 138 :S 1flmA 108 :R T0506 143 :RLYRLRTEGVQIN 1flmA 109 :AALVITVVSAEQT Number of specific fragments extracted= 10 number of extra gaps= 0 total=1237 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2088501120.pdb -s /var/tmp/to_scwrl_2088501120.seq -o /var/tmp/from_scwrl_2088501120.pdb > /var/tmp/scwrl_2088501120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2088501120.pdb Number of alignments=155 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIA 1flmA 96 :PEFEAIAR T0506 130 :YPKA 1flmA 104 :FKWA T0506 138 :S 1flmA 108 :R T0506 143 :RLYRLRTEGVQIN 1flmA 109 :AALVITVVSAEQT Number of specific fragments extracted= 10 number of extra gaps= 0 total=1247 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1576139679.pdb -s /var/tmp/to_scwrl_1576139679.seq -o /var/tmp/from_scwrl_1576139679.pdb > /var/tmp/scwrl_1576139679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1576139679.pdb Number of alignments=156 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLA 1flmA 96 :PEFEAI T0506 128 :ARYPKA 1flmA 102 :ARFKWA T0506 142 :TRLYRLRTEGVQIN 1flmA 108 :RAALVITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1256 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1535981976.pdb -s /var/tmp/to_scwrl_1535981976.seq -o /var/tmp/from_scwrl_1535981976.pdb > /var/tmp/scwrl_1535981976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1535981976.pdb Number of alignments=157 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLA 1flmA 96 :PEFEAI T0506 137 :LSL 1flmA 102 :ARF T0506 140 :PDTRLYRLRTEGVQIN 1flmA 106 :WARAALVITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1265 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_123973207.pdb -s /var/tmp/to_scwrl_123973207.seq -o /var/tmp/from_scwrl_123973207.pdb > /var/tmp/scwrl_123973207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_123973207.pdb Number of alignments=158 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIA 1flmA 96 :PEFEAIAR T0506 130 :YPKAK 1flmA 104 :FKWAR T0506 143 :RLYRLRTEGVQIN 1flmA 109 :AALVITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1274 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1789993792.pdb -s /var/tmp/to_scwrl_1789993792.seq -o /var/tmp/from_scwrl_1789993792.pdb > /var/tmp/scwrl_1789993792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1789993792.pdb Number of alignments=159 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPL 1flmA 96 :PEFEA T0506 127 :IARYPKAK 1flmA 101 :IARFKWAR T0506 143 :RLYRLRTEGVQIN 1flmA 109 :AALVITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1283 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2128893542.pdb -s /var/tmp/to_scwrl_2128893542.seq -o /var/tmp/from_scwrl_2128893542.pdb > /var/tmp/scwrl_2128893542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2128893542.pdb Number of alignments=160 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 75 :GRNG T0506 101 :TLPRLTLVGRADRIGP 1flmA 79 :PGTGFLIRGSAAFRTD T0506 117 :DEVP 1flmA 96 :PEFE T0506 126 :YIARYPKAK 1flmA 100 :AIARFKWAR T0506 143 :RLYRLRTEGVQIN 1flmA 109 :AALVITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1292 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2139444413.pdb -s /var/tmp/to_scwrl_2139444413.seq -o /var/tmp/from_scwrl_2139444413.pdb > /var/tmp/scwrl_2139444413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2139444413.pdb Number of alignments=161 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPL 1flmA 96 :PEFEA T0506 127 :IARYPKA 1flmA 101 :IARFKWA T0506 142 :TRLYRLRTEGVQIN 1flmA 108 :RAALVITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1301 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_328463890.pdb -s /var/tmp/to_scwrl_328463890.seq -o /var/tmp/from_scwrl_328463890.pdb > /var/tmp/scwrl_328463890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328463890.pdb Number of alignments=162 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)G156 because last residue in template chain is (1flmA)L122 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLA 1flmA 96 :PEFEAI T0506 132 :KAKLYL 1flmA 102 :ARFKWA T0506 142 :TRLYRLRTEGVQIN 1flmA 108 :RAALVITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1310 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2143170329.pdb -s /var/tmp/to_scwrl_2143170329.seq -o /var/tmp/from_scwrl_2143170329.pdb > /var/tmp/scwrl_2143170329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143170329.pdb Number of alignments=163 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIA 1flmA 96 :PEFEAIAR Number of specific fragments extracted= 7 number of extra gaps= 0 total=1317 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1802629158.pdb -s /var/tmp/to_scwrl_1802629158.seq -o /var/tmp/from_scwrl_1802629158.pdb > /var/tmp/scwrl_1802629158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802629158.pdb Number of alignments=164 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIA 1flmA 96 :PEFEAIAR Number of specific fragments extracted= 7 number of extra gaps= 0 total=1324 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1064242214.pdb -s /var/tmp/to_scwrl_1064242214.seq -o /var/tmp/from_scwrl_1064242214.pdb > /var/tmp/scwrl_1064242214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064242214.pdb Number of alignments=165 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIAR 1flmA 96 :PEFEAIARF Number of specific fragments extracted= 7 number of extra gaps= 0 total=1331 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1328099222.pdb -s /var/tmp/to_scwrl_1328099222.seq -o /var/tmp/from_scwrl_1328099222.pdb > /var/tmp/scwrl_1328099222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328099222.pdb Number of alignments=166 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 29 :VARDVLHTSRTAALATLD 1flmA 5 :TFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIA 1flmA 96 :PEFEAIAR T0506 130 :YPKA 1flmA 104 :FKWA T0506 138 :S 1flmA 108 :R T0506 143 :RLYRLRTEGVQ 1flmA 109 :AALVITVVSAE Number of specific fragments extracted= 10 number of extra gaps= 0 total=1341 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1005074010.pdb -s /var/tmp/to_scwrl_1005074010.seq -o /var/tmp/from_scwrl_1005074010.pdb > /var/tmp/scwrl_1005074010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005074010.pdb Number of alignments=167 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 28 :RVARDVLHTSRTAALATLD 1flmA 4 :GTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAIA 1flmA 96 :PEFEAIAR T0506 130 :YPKA 1flmA 104 :FKWA T0506 138 :S 1flmA 108 :R T0506 143 :RLYRLRTEGVQ 1flmA 109 :AALVITVVSAE Number of specific fragments extracted= 10 number of extra gaps= 0 total=1351 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_33524379.pdb -s /var/tmp/to_scwrl_33524379.seq -o /var/tmp/from_scwrl_33524379.pdb > /var/tmp/scwrl_33524379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_33524379.pdb Number of alignments=168 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 27 :VRVARDVLHTSRTAALATLD 1flmA 3 :PGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLA 1flmA 96 :PEFEAI T0506 128 :ARYPKA 1flmA 102 :ARFKWA T0506 142 :TRLYRLRTEGVQ 1flmA 108 :RAALVITVVSAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=1360 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_215092852.pdb -s /var/tmp/to_scwrl_215092852.seq -o /var/tmp/from_scwrl_215092852.pdb > /var/tmp/scwrl_215092852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215092852.pdb Number of alignments=169 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 27 :VRVARDVLHTSRTAALATLD 1flmA 3 :PGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLA 1flmA 96 :PEFEAI T0506 137 :LSL 1flmA 102 :ARF T0506 140 :PDTRLYRLRTEGVQ 1flmA 106 :WARAALVITVVSAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=1369 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1907947503.pdb -s /var/tmp/to_scwrl_1907947503.seq -o /var/tmp/from_scwrl_1907947503.pdb > /var/tmp/scwrl_1907947503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1907947503.pdb Number of alignments=170 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)E25 because first residue in template chain is (1flmA)M1 T0506 26 :AVRVARDVLHTSRTAALATLD 1flmA 2 :LPGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLAI 1flmA 96 :PEFEAIA Number of specific fragments extracted= 7 number of extra gaps= 0 total=1376 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1093273181.pdb -s /var/tmp/to_scwrl_1093273181.seq -o /var/tmp/from_scwrl_1093273181.pdb > /var/tmp/scwrl_1093273181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093273181.pdb Number of alignments=171 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 27 :VRVARDVLHTSRTAALATLD 1flmA 3 :PGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPL 1flmA 96 :PEFEA T0506 127 :IARYPKAK 1flmA 101 :IARFKWAR T0506 143 :RLYRLRTEGVQ 1flmA 109 :AALVITVVSAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=1385 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1943205575.pdb -s /var/tmp/to_scwrl_1943205575.seq -o /var/tmp/from_scwrl_1943205575.pdb > /var/tmp/scwrl_1943205575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943205575.pdb Number of alignments=172 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 28 :RVARDVLHTSRTAALATLD 1flmA 4 :GTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 75 :GRNG T0506 101 :TLPRLTLVGRADRIGP 1flmA 79 :PGTGFLIRGSAAFRTD T0506 117 :DEVP 1flmA 96 :PEFE T0506 126 :YIARYPKAK 1flmA 100 :AIARFKWAR T0506 143 :RLYRLRTEGVQI 1flmA 109 :AALVITVVSAEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=1394 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1050167510.pdb -s /var/tmp/to_scwrl_1050167510.seq -o /var/tmp/from_scwrl_1050167510.pdb > /var/tmp/scwrl_1050167510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1050167510.pdb Number of alignments=173 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 27 :VRVARDVLHTSRTAALATLD 1flmA 3 :PGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPL 1flmA 96 :PEFEA T0506 127 :IARYPKA 1flmA 101 :IARFKWA T0506 142 :TRLYRLRTEGVQI 1flmA 108 :RAALVITVVSAEQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=1403 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_521413532.pdb -s /var/tmp/to_scwrl_521413532.seq -o /var/tmp/from_scwrl_521413532.pdb > /var/tmp/scwrl_521413532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_521413532.pdb Number of alignments=174 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 27 :VRVARDVLHTSRTAALATLD 1flmA 3 :PGTFFEVLKNEGVVAIATQG T0506 48 :VSG 1flmA 23 :EDG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGS T0506 94 :FGKG 1flmA 77 :NGPG T0506 103 :PRLTLVGRADRIGP 1flmA 81 :TGFLIRGSAAFRTD T0506 117 :DEVPLA 1flmA 96 :PEFEAI T0506 132 :KAKLYL 1flmA 102 :ARFKWA T0506 142 :TRLYRLRTEGVQ 1flmA 108 :RAALVITVVSAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=1412 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1050762148.pdb -s /var/tmp/to_scwrl_1050762148.seq -o /var/tmp/from_scwrl_1050762148.pdb > /var/tmp/scwrl_1050762148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1050762148.pdb Number of alignments=175 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)L170 because last residue in template chain is (1flmA)L122 T0506 1 :MLDVAPPV 1flmA 1 :MLPGTFFE T0506 33 :VLHTSRTAALATLDP 1flmA 9 :VLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLAIARYIARY 1flmA 97 :EFEAIARFKWARA T0506 154 :IN 1flmA 111 :LV T0506 161 :NASNITPAD 1flmA 113 :ITVVSAEQT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1420 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1835056861.pdb -s /var/tmp/to_scwrl_1835056861.seq -o /var/tmp/from_scwrl_1835056861.pdb > /var/tmp/scwrl_1835056861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1835056861.pdb Number of alignments=176 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)L170 because last residue in template chain is (1flmA)L122 T0506 1 :MLDVAPP 1flmA 1 :MLPGTFF T0506 32 :DVLHTSRTAALATLDP 1flmA 8 :EVLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLAIARYIARYPKA 1flmA 97 :EFEAIARFKWARAALV T0506 161 :NASNITPAD 1flmA 113 :ITVVSAEQT Number of specific fragments extracted= 7 number of extra gaps= 0 total=1427 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_283797829.pdb -s /var/tmp/to_scwrl_283797829.seq -o /var/tmp/from_scwrl_283797829.pdb > /var/tmp/scwrl_283797829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_283797829.pdb Number of alignments=177 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)L170 because last residue in template chain is (1flmA)L122 T0506 1 :MLDVAPP 1flmA 1 :MLPGTFF T0506 32 :DVLHTSRTAALATLDP 1flmA 8 :EVLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLAIARYIARYPKA 1flmA 97 :EFEAIARFKWARAALV T0506 161 :NASNITPAD 1flmA 113 :ITVVSAEQT Number of specific fragments extracted= 7 number of extra gaps= 0 total=1434 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_424105414.pdb -s /var/tmp/to_scwrl_424105414.seq -o /var/tmp/from_scwrl_424105414.pdb > /var/tmp/scwrl_424105414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_424105414.pdb Number of alignments=178 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)L170 because last residue in template chain is (1flmA)L122 T0506 1 :MLDVAPP 1flmA 1 :MLPGTFF T0506 32 :DVLHTSRTAALATLDP 1flmA 8 :EVLKNEGVVAIATQGE T0506 49 :SG 1flmA 24 :DG T0506 52 :PYTTATN 1flmA 26 :PHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 131 :PKAKLYLSLPDTR 1flmA 96 :PEFEAIARFKWAR T0506 144 :LYRLRTEGVQIN 1flmA 110 :ALVITVVSAEQT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1442 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1558218999.pdb -s /var/tmp/to_scwrl_1558218999.seq -o /var/tmp/from_scwrl_1558218999.pdb > /var/tmp/scwrl_1558218999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1558218999.pdb Number of alignments=179 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)L170 because last residue in template chain is (1flmA)L122 T0506 1 :ML 1flmA 1 :ML T0506 23 :PFEAVR 1flmA 3 :PGTFFE T0506 33 :VLHTSRTAALATLDP 1flmA 9 :VLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAG T0506 100 :LTLP 1flmA 76 :RNGP T0506 104 :RLTLVGRADRIGPD 1flmA 82 :GFLIRGSAAFRTDG T0506 118 :EVPLAIA 1flmA 97 :EFEAIAR T0506 126 :Y 1flmA 104 :F T0506 135 :LYLS 1flmA 105 :KWAR T0506 145 :YRLRTEGV 1flmA 111 :LVITVVSA T0506 167 :PAD 1flmA 119 :EQT Number of specific fragments extracted= 12 number of extra gaps= 0 total=1454 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_313874609.pdb -s /var/tmp/to_scwrl_313874609.seq -o /var/tmp/from_scwrl_313874609.pdb > /var/tmp/scwrl_313874609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_313874609.pdb Number of alignments=180 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)N155 because last residue in template chain is (1flmA)L122 T0506 1 :MLDV 1flmA 1 :MLPG T0506 26 :AV 1flmA 5 :TF T0506 31 :RDVLHTSRTAALATLDP 1flmA 7 :FEVLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EV 1flmA 97 :EF T0506 132 :KAKLYLSLPDTRLYRLRTEGVQI 1flmA 99 :EAIARFKWARAALVITVVSAEQT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1462 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_191531057.pdb -s /var/tmp/to_scwrl_191531057.seq -o /var/tmp/from_scwrl_191531057.pdb > /var/tmp/scwrl_191531057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_191531057.pdb Number of alignments=181 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)N155 because last residue in template chain is (1flmA)L122 T0506 1 :MLDVAP 1flmA 1 :MLPGTF T0506 31 :RDVLHTSRTAALATLDP 1flmA 7 :FEVLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 131 :PKAKLYLS 1flmA 96 :PEFEAIAR T0506 139 :LPDTRLYRLRTEGVQI 1flmA 106 :WARAALVITVVSAEQT Number of specific fragments extracted= 7 number of extra gaps= 0 total=1469 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_364924770.pdb -s /var/tmp/to_scwrl_364924770.seq -o /var/tmp/from_scwrl_364924770.pdb > /var/tmp/scwrl_364924770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364924770.pdb Number of alignments=182 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)L170 because last residue in template chain is (1flmA)L122 T0506 1 :MLDVAPP 1flmA 1 :MLPGTFF T0506 32 :DVLHTSRTAALATLDP 1flmA 8 :EVLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLAIAR 1flmA 97 :EFEAIARF T0506 131 :PKAKLYL 1flmA 105 :KWARAAL T0506 146 :R 1flmA 112 :V T0506 161 :NASNITPAD 1flmA 113 :ITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1478 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1300837762.pdb -s /var/tmp/to_scwrl_1300837762.seq -o /var/tmp/from_scwrl_1300837762.pdb > /var/tmp/scwrl_1300837762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300837762.pdb Number of alignments=183 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)A22 because first residue in template chain is (1flmA)M1 Warning: unaligning (T0506)L174 because last residue in template chain is (1flmA)L122 T0506 23 :PFEAVRV 1flmA 2 :LPGTFFE T0506 33 :VLHTSRTAALATLD 1flmA 9 :VLKNEGVVAIATQG T0506 49 :SGYPYTTATN 1flmA 23 :EDGPHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPDE 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDGP T0506 132 :KAKLYLS 1flmA 97 :EFEAIAR T0506 139 :LPDTR 1flmA 106 :WARAA T0506 145 :YRLRTEGVQIN 1flmA 111 :LVITVVSAEQT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1486 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2122717354.pdb -s /var/tmp/to_scwrl_2122717354.seq -o /var/tmp/from_scwrl_2122717354.pdb > /var/tmp/scwrl_2122717354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2122717354.pdb Number of alignments=184 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 1 :M 1flmA 1 :M T0506 22 :A 1flmA 2 :L T0506 24 :FEAVRV 1flmA 3 :PGTFFE T0506 33 :VLHTSRTAALATLD 1flmA 9 :VLKNEGVVAIATQG T0506 49 :SGYPYTTATN 1flmA 23 :EDGPHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLG T0506 93 :PFGKG 1flmA 74 :AGRNG T0506 101 :TLPRLTLVGRADRIGPD 1flmA 79 :PGTGFLIRGSAAFRTDG T0506 118 :EV 1flmA 97 :EF T0506 128 :ARYP 1flmA 99 :EAIA T0506 138 :SLPDT 1flmA 103 :RFKWA T0506 143 :RLYRLRTEGVQIN 1flmA 109 :AALVITVVSAEQT Number of specific fragments extracted= 12 number of extra gaps= 0 total=1498 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1553675364.pdb -s /var/tmp/to_scwrl_1553675364.seq -o /var/tmp/from_scwrl_1553675364.pdb > /var/tmp/scwrl_1553675364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553675364.pdb Number of alignments=185 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)L174 because last residue in template chain is (1flmA)L122 T0506 1 :MLDVA 1flmA 1 :MLPGT T0506 27 :V 1flmA 6 :F T0506 31 :RDVLHTSRTAALATLD 1flmA 7 :FEVLKNEGVVAIATQG T0506 49 :SGYPYTTATNIGIEP 1flmA 23 :EDGPHLVNTWNSYLK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 131 :PKAKLYLS 1flmA 96 :PEFEAIAR T0506 139 :LPDTRL 1flmA 106 :WARAAL T0506 146 :RLRTEGVQIN 1flmA 112 :VITVVSAEQT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1507 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1241855235.pdb -s /var/tmp/to_scwrl_1241855235.seq -o /var/tmp/from_scwrl_1241855235.pdb > /var/tmp/scwrl_1241855235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1241855235.pdb Number of alignments=186 # 1flmA read from all-align.a2m # found chain 1flmA in training set Warning: unaligning (T0506)N155 because last residue in template chain is (1flmA)L122 T0506 1 :MLD 1flmA 1 :MLP T0506 24 :FEAV 1flmA 4 :GTFF T0506 32 :DVLHTSRTAALATLDP 1flmA 8 :EVLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLA 1flmA 97 :EFEAI T0506 135 :LYLSLPDTRLYRLRTEGVQI 1flmA 102 :ARFKWARAALVITVVSAEQT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1515 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1551373387.pdb -s /var/tmp/to_scwrl_1551373387.seq -o /var/tmp/from_scwrl_1551373387.pdb > /var/tmp/scwrl_1551373387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1551373387.pdb Number of alignments=187 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLAIA 1flmA 97 :EFEAIAR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1518 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_942173695.pdb -s /var/tmp/to_scwrl_942173695.seq -o /var/tmp/from_scwrl_942173695.pdb > /var/tmp/scwrl_942173695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942173695.pdb Number of alignments=188 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 33 :VLHTSRTAALATLDP 1flmA 9 :VLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARY 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDGPEFEAIARF Number of specific fragments extracted= 4 number of extra gaps= 0 total=1522 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1365828442.pdb -s /var/tmp/to_scwrl_1365828442.seq -o /var/tmp/from_scwrl_1365828442.pdb > /var/tmp/scwrl_1365828442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1365828442.pdb Number of alignments=189 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 36 :TSRTAALATLDP 1flmA 12 :NEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLAI 1flmA 97 :EFEAIA Number of specific fragments extracted= 5 number of extra gaps= 0 total=1527 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1193883532.pdb -s /var/tmp/to_scwrl_1193883532.seq -o /var/tmp/from_scwrl_1193883532.pdb > /var/tmp/scwrl_1193883532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193883532.pdb Number of alignments=190 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1529 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_923583590.pdb -s /var/tmp/to_scwrl_923583590.seq -o /var/tmp/from_scwrl_923583590.pdb > /var/tmp/scwrl_923583590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923583590.pdb Number of alignments=191 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 41 :ALATLDP 1flmA 17 :AIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAG T0506 100 :LTLP 1flmA 76 :RNGP T0506 104 :RLTLVGRADR 1flmA 82 :GFLIRGSAAF Number of specific fragments extracted= 5 number of extra gaps= 0 total=1534 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1357789209.pdb -s /var/tmp/to_scwrl_1357789209.seq -o /var/tmp/from_scwrl_1357789209.pdb > /var/tmp/scwrl_1357789209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1357789209.pdb Number of alignments=192 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 33 :VLHTSRTAALATLDP 1flmA 9 :VLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EV 1flmA 97 :EF Number of specific fragments extracted= 5 number of extra gaps= 0 total=1539 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1522347422.pdb -s /var/tmp/to_scwrl_1522347422.seq -o /var/tmp/from_scwrl_1522347422.pdb > /var/tmp/scwrl_1522347422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522347422.pdb Number of alignments=193 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 34 :LHTSRTAALATLDP 1flmA 10 :LKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 131 :PKAKL 1flmA 96 :PEFEA Number of specific fragments extracted= 5 number of extra gaps= 0 total=1544 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_919270272.pdb -s /var/tmp/to_scwrl_919270272.seq -o /var/tmp/from_scwrl_919270272.pdb > /var/tmp/scwrl_919270272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_919270272.pdb Number of alignments=194 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPLA 1flmA 97 :EFEAI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1547 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1012934721.pdb -s /var/tmp/to_scwrl_1012934721.seq -o /var/tmp/from_scwrl_1012934721.pdb > /var/tmp/scwrl_1012934721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1012934721.pdb Number of alignments=195 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 42 :LATLD 1flmA 18 :IATQG T0506 49 :SGYPYTTATN 1flmA 23 :EDGPHLVNTW T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVP 1flmA 97 :EFE T0506 133 :AKLYLSLPDTR 1flmA 100 :AIARFKWARAA T0506 145 :YRLRTEGV 1flmA 111 :LVITVVSA Number of specific fragments extracted= 7 number of extra gaps= 0 total=1554 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_439105989.pdb -s /var/tmp/to_scwrl_439105989.seq -o /var/tmp/from_scwrl_439105989.pdb > /var/tmp/scwrl_439105989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439105989.pdb Number of alignments=196 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1flmA 36 :LKVLDGNRIVVPVGGMHKTEANVARDERVLMTLG T0506 93 :PFGKG 1flmA 74 :AGRNG T0506 101 :TLPRLTLVGRADRIGPD 1flmA 79 :PGTGFLIRGSAAFRTDG T0506 118 :EV 1flmA 97 :EF T0506 128 :ARYP 1flmA 99 :EAIA T0506 138 :SLPDT 1flmA 103 :RFKWA T0506 143 :RLYRLRTEGVQ 1flmA 109 :AALVITVVSAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=1561 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_99885848.pdb -s /var/tmp/to_scwrl_99885848.seq -o /var/tmp/from_scwrl_99885848.pdb > /var/tmp/scwrl_99885848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_99885848.pdb Number of alignments=197 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 33 :VLHTSRTAALATLD 1flmA 9 :VLKNEGVVAIATQG T0506 49 :SGYPYTTATNIGIEP 1flmA 23 :EDGPHLVNTWNSYLK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 131 :PKAKLYLS 1flmA 96 :PEFEAIAR T0506 139 :LPDTRLY 1flmA 106 :WARAALV T0506 147 :LRTEG 1flmA 113 :ITVVS Number of specific fragments extracted= 7 number of extra gaps= 0 total=1568 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2018008731.pdb -s /var/tmp/to_scwrl_2018008731.seq -o /var/tmp/from_scwrl_2018008731.pdb > /var/tmp/scwrl_2018008731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2018008731.pdb Number of alignments=198 # 1flmA read from all-align.a2m # found chain 1flmA in training set T0506 33 :VLHTSRTAALATLDP 1flmA 9 :VLKNEGVVAIATQGE T0506 49 :SGYPYTTATNIGIEP 1flmA 24 :DGPHLVNTWNSYLKV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1flmA 41 :GNRIVVPVGGMHKTEANVARDERVLMTLGSRK T0506 96 :KGDALTLPRLTLVGRADRIGPD 1flmA 74 :AGRNGPGTGFLIRGSAAFRTDG T0506 118 :EVPL 1flmA 97 :EFEA Number of specific fragments extracted= 5 number of extra gaps= 0 total=1573 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_472630368.pdb -s /var/tmp/to_scwrl_472630368.seq -o /var/tmp/from_scwrl_472630368.pdb > /var/tmp/scwrl_472630368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_472630368.pdb Number of alignments=199 1g79A expands to /projects/compbio/data/pdb/1g79.pdb.gz 1g79A:Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 811, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 1326, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 1328, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 1330, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 1332, because occupancy 0.500 <= existing 0.500 in 1g79A Skipped atom 1334, because occupancy 0.500 <= existing 0.500 in 1g79A # 1g79A read from all-align.a2m # adding 1g79A to template set # found chain 1g79A in template set Warning: unaligning (T0506)P219 because last residue in template chain is (1g79A)P218 T0506 10 :TPRGTKIEPSA 1g79A 21 :GLRRRDLPADP T0506 21 :GAPFEAVRVARD 1g79A 33 :TLFERWLSQACE T0506 34 :LHTSRTAALATLDP 1g79A 47 :LADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDG 1g79A 61 :HGQPYQRIVLLKHYDEK T0506 67 :PFFFAAG 1g79A 78 :GMVFYTN T0506 74 :LTLHARNMETDARISVTLAP 1g79A 86 :GSRKAHQIENNPRVSLLFPW T0506 104 :RLTLVGRADRIGPDE 1g79A 111 :QVMVIGKAERLSTLE T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLR 1g79A 126 :VMKYFHSRPRDSQIGAWVSKQSSRISARG T0506 149 :TEGVQINGGPAR 1g79A 157 :ESKFLELKQKFQ T0506 162 :ASNITPADLRTDLSGAEELMAAAESEATRLN 1g79A 169 :QGEVPLPSFWGGFRVSLEQIEFWQGGEHRLH T0506 199 :SRLAVLAG 1g79A 200 :DRFLYQRE T0506 209 :TGRWKITSID 1g79A 208 :NDAWKIDRLA Number of specific fragments extracted= 12 number of extra gaps= 0 total=1585 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_314978700.pdb -s /var/tmp/to_scwrl_314978700.seq -o /var/tmp/from_scwrl_314978700.pdb > /var/tmp/scwrl_314978700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_314978700.pdb Number of alignments=200 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 38 :RTAALATLDP 1g79A 51 :TAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDG 1g79A 61 :HGQPYQRIVLLKHYDEK T0506 67 :PFFFAAG 1g79A 78 :GMVFYTN T0506 74 :LTLHARNMETDARISVTLAP 1g79A 86 :GSRKAHQIENNPRVSLLFPW T0506 101 :T 1g79A 107 :T T0506 102 :LPRLTLVGRADRIGPDE 1g79A 109 :ERQVMVIGKAERLSTLE T0506 120 :PLAIARYIARYPKAKLYLSL 1g79A 126 :VMKYFHSRPRDSQIGAWVSK Number of specific fragments extracted= 7 number of extra gaps= 0 total=1592 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1778472587.pdb -s /var/tmp/to_scwrl_1778472587.seq -o /var/tmp/from_scwrl_1778472587.pdb > /var/tmp/scwrl_1778472587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1778472587.pdb Number of alignments=201 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 1 :MLDVAPPVI 1g79A 21 :GLRRRDLPA T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDP 1g79A 30 :DPLTLFERWLSQACEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGP 1g79A 111 :QVMVIGKAERLST T0506 206 :GAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQ 1g79A 124 :LEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1597 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1565903550.pdb -s /var/tmp/to_scwrl_1565903550.seq -o /var/tmp/from_scwrl_1565903550.pdb > /var/tmp/scwrl_1565903550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1565903550.pdb Number of alignments=202 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 1 :MLDVAPPVITPR 1g79A 21 :GLRRRDLPADPL T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1g79A 33 :TLFERWLSQACEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNI 1g79A 61 :HGQPYQRIVLL T0506 61 :IEPDGTPFFFAAGL 1g79A 72 :KHYDEKGMVFYTNL T0506 75 :TLHARNMETDARISVTLAPFGKGD 1g79A 87 :SRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGP 1g79A 111 :QVMVIGKAERLST T0506 196 :GEASRLAVLAGAKT 1g79A 134 :PRDSQIGAWVSKQS T0506 210 :GRWKITSIDPDGID 1g79A 176 :SFWGGFRVSLEQIE T0506 224 :LASASDLARLWFAERV 1g79A 192 :QGGEHRLHDRFLYQRE T0506 246 :EKALAQLLK 1g79A 210 :AWKIDRLAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=1607 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_110700628.pdb -s /var/tmp/to_scwrl_110700628.seq -o /var/tmp/from_scwrl_110700628.pdb > /var/tmp/scwrl_110700628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110700628.pdb Number of alignments=203 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 28 :RVARDVLHTSRTAALATLDP 1g79A 41 :QACEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGPDEVP 1g79A 111 :QVMVIGKAERLSTLEVM T0506 122 :AIARYIARYPKAKLYLSLPDTRL 1g79A 128 :KYFHSRPRDSQIGAWVSKQSSRI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1611 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_681156450.pdb -s /var/tmp/to_scwrl_681156450.seq -o /var/tmp/from_scwrl_681156450.pdb > /var/tmp/scwrl_681156450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681156450.pdb Number of alignments=204 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 28 :RVARDVLHTSRTAALATLDP 1g79A 41 :QACEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNI 1g79A 61 :HGQPYQRIVLL T0506 61 :IEPDGTPFFFAAGL 1g79A 72 :KHYDEKGMVFYTNL T0506 75 :TLHARNMETDARISVTLAPFGKGD 1g79A 87 :SRKAHQIENNPRVSLLFPWHTLER T0506 104 :RLTLVGRADRIGPDEVP 1g79A 111 :QVMVIGKAERLSTLEVM T0506 122 :AIARYIARYPKAKLYLSLPDTRL 1g79A 128 :KYFHSRPRDSQIGAWVSKQSSRI Number of specific fragments extracted= 6 number of extra gaps= 0 total=1617 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2087317082.pdb -s /var/tmp/to_scwrl_2087317082.seq -o /var/tmp/from_scwrl_2087317082.pdb > /var/tmp/scwrl_2087317082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087317082.pdb Number of alignments=205 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1g79A 21 :GLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVD T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 60 :EHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1g79A 110 :RQVMVIGKAERLSTLEV T0506 168 :ADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTG 1g79A 127 :MKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQ T0506 211 :RWKITSIDPDGIDLASASDL 1g79A 177 :FWGGFRVSLEQIEFWQGGEH T0506 231 :ARLWFAER 1g79A 200 :DRFLYQRE T0506 244 :QFEKALAQLLK 1g79A 208 :NDAWKIDRLAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=1624 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1161462775.pdb -s /var/tmp/to_scwrl_1161462775.seq -o /var/tmp/from_scwrl_1161462775.pdb > /var/tmp/scwrl_1161462775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1161462775.pdb Number of alignments=206 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1g79A)G20 T0506 13 :GTKIEPSAGAPFEA 1g79A 21 :GLRRRDLPADPLTL T0506 27 :VRVARDVLHTSRTAALATLDP 1g79A 40 :SQACEAKLADPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1g79A 110 :RQVMVIGKAERLSTLEV T0506 142 :TRLYRLRTEGVQINGGPARNASNI 1g79A 127 :MKYFHSRPRDSQIGAWVSKQSSRI T0506 175 :SGAEELMAAAESEATRL 1g79A 151 :SARGILESKFLELKQKF T0506 194 :IKGE 1g79A 168 :QQGE T0506 206 :GAKTGRWKITSIDPDGIDLASAS 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGG T0506 229 :DLARLWFAER 1g79A 198 :LHDRFLYQRE T0506 244 :QFEKALAQLLK 1g79A 208 :NDAWKIDRLAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=1634 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_368729664.pdb -s /var/tmp/to_scwrl_368729664.seq -o /var/tmp/from_scwrl_368729664.pdb > /var/tmp/scwrl_368729664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368729664.pdb Number of alignments=207 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P219 because last residue in template chain is (1g79A)P218 T0506 210 :GRWKITSID 1g79A 209 :DAWKIDRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1635 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 36 :TSRTAALATLDP 1g79A 49 :DPTAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1g79A 110 :RQVMVIGKAERLSTLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1638 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_223631264.pdb -s /var/tmp/to_scwrl_223631264.seq -o /var/tmp/from_scwrl_223631264.pdb > /var/tmp/scwrl_223631264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223631264.pdb Number of alignments=208 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 104 :RLTLVGRADRIGPDEV 1g79A 111 :QVMVIGKAERLSTLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1639 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFP T0506 94 :F 1g79A 105 :W T0506 100 :LTLPR 1g79A 106 :HTLER T0506 105 :LTLVGRADRIGPDEV 1g79A 112 :VMVIGKAERLSTLEV T0506 124 :ARYIA 1g79A 127 :MKYFH Number of specific fragments extracted= 5 number of extra gaps= 0 total=1644 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1585568190.pdb -s /var/tmp/to_scwrl_1585568190.seq -o /var/tmp/from_scwrl_1585568190.pdb > /var/tmp/scwrl_1585568190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585568190.pdb Number of alignments=209 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1653 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1926948663.pdb -s /var/tmp/to_scwrl_1926948663.seq -o /var/tmp/from_scwrl_1926948663.pdb > /var/tmp/scwrl_1926948663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1926948663.pdb Number of alignments=210 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1662 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_537505873.pdb -s /var/tmp/to_scwrl_537505873.seq -o /var/tmp/from_scwrl_537505873.pdb > /var/tmp/scwrl_537505873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_537505873.pdb Number of alignments=211 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1671 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1777099247.pdb -s /var/tmp/to_scwrl_1777099247.seq -o /var/tmp/from_scwrl_1777099247.pdb > /var/tmp/scwrl_1777099247.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1777099247.pdb Number of alignments=212 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)P219 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITP 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFL T0506 205 :AGAKTGRWKITSID 1g79A 204 :YQRENDAWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1681 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_144389786.pdb -s /var/tmp/to_scwrl_144389786.seq -o /var/tmp/from_scwrl_144389786.pdb > /var/tmp/scwrl_144389786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_144389786.pdb Number of alignments=213 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITP 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFL T0506 227 :ASDLARLW 1g79A 210 :AWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1691 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1838343635.pdb -s /var/tmp/to_scwrl_1838343635.seq -o /var/tmp/from_scwrl_1838343635.pdb > /var/tmp/scwrl_1838343635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838343635.pdb Number of alignments=214 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR T0506 213 :KITSIDPDGIDLAS 1g79A 202 :FLYQRENDAWKIDR Number of specific fragments extracted= 10 number of extra gaps= 0 total=1701 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1752332954.pdb -s /var/tmp/to_scwrl_1752332954.seq -o /var/tmp/from_scwrl_1752332954.pdb > /var/tmp/scwrl_1752332954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1752332954.pdb Number of alignments=215 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)P219 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITP 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFL T0506 205 :AGAKTGRWKITSID 1g79A 204 :YQRENDAWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1711 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1698065151.pdb -s /var/tmp/to_scwrl_1698065151.seq -o /var/tmp/from_scwrl_1698065151.pdb > /var/tmp/scwrl_1698065151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1698065151.pdb Number of alignments=216 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1720 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_932715225.pdb -s /var/tmp/to_scwrl_932715225.seq -o /var/tmp/from_scwrl_932715225.pdb > /var/tmp/scwrl_932715225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_932715225.pdb Number of alignments=217 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1g79A 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD T0506 223 :DLAS 1g79A 201 :RFLY T0506 227 :ASDLARLW 1g79A 210 :AWKIDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1731 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1156222694.pdb -s /var/tmp/to_scwrl_1156222694.seq -o /var/tmp/from_scwrl_1156222694.pdb > /var/tmp/scwrl_1156222694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156222694.pdb Number of alignments=218 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)E237 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 24 :FEAVRVARDV 1g79A 36 :ERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1g79A 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAI 1g79A 110 :RQVMVIGKAERLSTLEVMKYF T0506 125 :RYIA 1g79A 137 :SQIG T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD T0506 223 :DLAS 1g79A 201 :RFLY T0506 227 :ASDLARLWFA 1g79A 208 :NDAWKIDRLA Number of specific fragments extracted= 12 number of extra gaps= 0 total=1743 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_492755199.pdb -s /var/tmp/to_scwrl_492755199.seq -o /var/tmp/from_scwrl_492755199.pdb > /var/tmp/scwrl_492755199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_492755199.pdb Number of alignments=219 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD T0506 212 :WKITSIDPDGID 1g79A 201 :RFLYQRENDAWK T0506 230 :LARLW 1g79A 213 :IDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1754 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_151060020.pdb -s /var/tmp/to_scwrl_151060020.seq -o /var/tmp/from_scwrl_151060020.pdb > /var/tmp/scwrl_151060020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151060020.pdb Number of alignments=220 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNAS 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLH T0506 211 :RWKITSIDPDGIDLAS 1g79A 200 :DRFLYQRENDAWKIDR Number of specific fragments extracted= 10 number of extra gaps= 0 total=1764 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_202622580.pdb -s /var/tmp/to_scwrl_202622580.seq -o /var/tmp/from_scwrl_202622580.pdb > /var/tmp/scwrl_202622580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202622580.pdb Number of alignments=221 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDL 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1773 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1416338788.pdb -s /var/tmp/to_scwrl_1416338788.seq -o /var/tmp/from_scwrl_1416338788.pdb > /var/tmp/scwrl_1416338788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416338788.pdb Number of alignments=222 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)A182 because last residue in template chain is (1g79A)P218 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1782 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1508849229.pdb -s /var/tmp/to_scwrl_1508849229.seq -o /var/tmp/from_scwrl_1508849229.pdb > /var/tmp/scwrl_1508849229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508849229.pdb Number of alignments=223 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLS 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAW Number of specific fragments extracted= 9 number of extra gaps= 0 total=1791 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1724970002.pdb -s /var/tmp/to_scwrl_1724970002.seq -o /var/tmp/from_scwrl_1724970002.pdb > /var/tmp/scwrl_1724970002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724970002.pdb Number of alignments=224 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1800 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_188125413.pdb -s /var/tmp/to_scwrl_188125413.seq -o /var/tmp/from_scwrl_188125413.pdb > /var/tmp/scwrl_188125413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_188125413.pdb Number of alignments=225 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=1809 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_374300304.pdb -s /var/tmp/to_scwrl_374300304.seq -o /var/tmp/from_scwrl_374300304.pdb > /var/tmp/scwrl_374300304.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_374300304.pdb Number of alignments=226 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1818 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_16592345.pdb -s /var/tmp/to_scwrl_16592345.seq -o /var/tmp/from_scwrl_16592345.pdb > /var/tmp/scwrl_16592345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16592345.pdb Number of alignments=227 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1827 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_288011261.pdb -s /var/tmp/to_scwrl_288011261.seq -o /var/tmp/from_scwrl_288011261.pdb > /var/tmp/scwrl_288011261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_288011261.pdb Number of alignments=228 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=1836 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_244825388.pdb -s /var/tmp/to_scwrl_244825388.seq -o /var/tmp/from_scwrl_244825388.pdb > /var/tmp/scwrl_244825388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_244825388.pdb Number of alignments=229 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1g79A 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=1845 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_489222713.pdb -s /var/tmp/to_scwrl_489222713.seq -o /var/tmp/from_scwrl_489222713.pdb > /var/tmp/scwrl_489222713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_489222713.pdb Number of alignments=230 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 24 :FEAVRVARDV 1g79A 36 :ERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDG 1g79A 74 :YDEKG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 79 :MVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAI 1g79A 110 :RQVMVIGKAERLSTLEVMKYF T0506 125 :RYIA 1g79A 137 :SQIG T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNAS 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLH Number of specific fragments extracted= 10 number of extra gaps= 0 total=1855 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_602989962.pdb -s /var/tmp/to_scwrl_602989962.seq -o /var/tmp/from_scwrl_602989962.pdb > /var/tmp/scwrl_602989962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602989962.pdb Number of alignments=231 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=1864 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2023297975.pdb -s /var/tmp/to_scwrl_2023297975.seq -o /var/tmp/from_scwrl_2023297975.pdb > /var/tmp/scwrl_2023297975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2023297975.pdb Number of alignments=232 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1g79A)G20 T0506 8 :VITPRGTKIEP 1g79A 21 :GLRRRDLPADP T0506 20 :AGAPFEAVRVARDV 1g79A 32 :LTLFERWLSQACEA T0506 34 :LHTSRTAALATLD 1g79A 47 :LADPTAMVVATVD T0506 48 :VSGYPYTTATNIG 1g79A 60 :EHGQPYQRIVLLK T0506 61 :IEPDGT 1g79A 74 :YDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1g79A 110 :RQVMVIGKAERLSTLEVMKYFHSRPR T0506 129 :RYPKAK 1g79A 166 :KFQQGE T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASN 1g79A 172 :VPLPSFWGGFRVSLEQIEFWQGGEHRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=1873 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2055126263.pdb -s /var/tmp/to_scwrl_2055126263.seq -o /var/tmp/from_scwrl_2055126263.pdb > /var/tmp/scwrl_2055126263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2055126263.pdb Number of alignments=233 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 16 :IEPSAGAPFEAVRVARDVLHTS 1g79A 21 :GLRRRDLPADPLTLFERWLSQA T0506 38 :RTAALATLDP 1g79A 51 :TAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLSLPDTR 1g79A 126 :VMKYFHSRPRDSQIGAWVSKQS T0506 162 :ASNITPADLRTDLSGAEELMAAA 1g79A 148 :SRISARGILESKFLELKQKFQQG T0506 209 :TGRWKITSIDPDGIDLASASDLA 1g79A 175 :PSFWGGFRVSLEQIEFWQGGEHR T0506 233 :LWFAERVETLKQFE 1g79A 198 :LHDRFLYQRENDAW T0506 248 :ALAQLLK 1g79A 212 :KIDRLAP Number of specific fragments extracted= 9 number of extra gaps= 0 total=1882 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_713690590.pdb -s /var/tmp/to_scwrl_713690590.seq -o /var/tmp/from_scwrl_713690590.pdb > /var/tmp/scwrl_713690590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_713690590.pdb Number of alignments=234 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1g79A 24 :RRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGP 1g79A 110 :RQVMVIGKAERLST T0506 120 :PLAIARYIARYPKAKLYLSL 1g79A 124 :LEVMKYFHSRPRDSQIGAWV T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLAGAK 1g79A 144 :SKQSSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVETLKQF 1g79A 175 :PSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAW T0506 248 :ALAQLLK 1g79A 212 :KIDRLAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=1889 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_556970778.pdb -s /var/tmp/to_scwrl_556970778.seq -o /var/tmp/from_scwrl_556970778.pdb > /var/tmp/scwrl_556970778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_556970778.pdb Number of alignments=235 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1g79A 24 :RRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLSLPD 1g79A 126 :VMKYFHSRPRDSQIGAWVSK T0506 181 :MAAAESEATRLNAIKGEASRLAVLAGAK 1g79A 146 :QSSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDG 1g79A 175 :PSFWGGFRVSLEQ T0506 224 :LASASDLARLWFAERVETLKQFEKALAQLLK 1g79A 188 :IEFWQGGEHRLHDRFLYQRENDAWKIDRLAP Number of specific fragments extracted= 7 number of extra gaps= 0 total=1896 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1994959698.pdb -s /var/tmp/to_scwrl_1994959698.seq -o /var/tmp/from_scwrl_1994959698.pdb > /var/tmp/scwrl_1994959698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994959698.pdb Number of alignments=236 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)L242 because last residue in template chain is (1g79A)P218 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALA 1g79A 21 :GLRRRDLPADPLTLFERWLSQACEAKLA T0506 46 :D 1g79A 51 :T T0506 47 :PVSGYPYTTATNI 1g79A 59 :DEHGQPYQRIVLL T0506 60 :GIEPDGT 1g79A 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPD 1g79A 110 :RQVMVIGKAERLSTL T0506 121 :LAIARYIARYPKAKLYLS 1g79A 125 :EVMKYFHSRPRDSQIGAW T0506 141 :D 1g79A 147 :S T0506 162 :ASNITPADLRT 1g79A 148 :SRISARGILES T0506 197 :EASRLAVLAGAK 1g79A 159 :KFLELKQKFQQG T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVET 1g79A 185 :LEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1907 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1875153366.pdb -s /var/tmp/to_scwrl_1875153366.seq -o /var/tmp/from_scwrl_1875153366.pdb > /var/tmp/scwrl_1875153366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1875153366.pdb Number of alignments=237 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)P219 because last residue in template chain is (1g79A)P218 T0506 19 :SAGAPFEAVRVARDVLHTSRT 1g79A 25 :RDLPADPLTLFERWLSQACEA T0506 40 :AALATLDP 1g79A 53 :MVVATVDE T0506 49 :SGYPYTTATNI 1g79A 61 :HGQPYQRIVLL T0506 60 :GIEPDGT 1g79A 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 121 :LAIARYIARYPKAKLYLS 1g79A 151 :SARGILESKFLELKQKFQ T0506 139 :LPDTRLYRLRTEGVQINGG 1g79A 175 :PSFWGGFRVSLEQIEFWQG T0506 159 :ARNASNI 1g79A 194 :GEHRLHD T0506 167 :P 1g79A 201 :R T0506 170 :L 1g79A 202 :F T0506 209 :TGRWKITSID 1g79A 208 :NDAWKIDRLA Number of specific fragments extracted= 12 number of extra gaps= 0 total=1919 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_925700442.pdb -s /var/tmp/to_scwrl_925700442.seq -o /var/tmp/from_scwrl_925700442.pdb > /var/tmp/scwrl_925700442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925700442.pdb Number of alignments=238 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 1g79A 21 :GLRRRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLS 1g79A 126 :VMKYFHSRPRDSQIGAW T0506 173 :D 1g79A 146 :Q T0506 182 :AAAESEATRLNAIK 1g79A 147 :SSRISARGILESKF T0506 199 :SRLAVLAGAK 1g79A 161 :LELKQKFQQG T0506 209 :TGRWKITSIDPDGIDLASAS 1g79A 175 :PSFWGGFRVSLEQIEFWQGG T0506 229 :DLARLWFAER 1g79A 199 :HDRFLYQREN T0506 239 :V 1g79A 215 :R T0506 252 :LLK 1g79A 216 :LAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=1930 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_71107316.pdb -s /var/tmp/to_scwrl_71107316.seq -o /var/tmp/from_scwrl_71107316.pdb > /var/tmp/scwrl_71107316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71107316.pdb Number of alignments=239 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1g79A 24 :RRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPD 1g79A 110 :RQVMVIGKAERLSTL T0506 121 :LAIARYIARYPKAKLYLSLPDT 1g79A 125 :EVMKYFHSRPRDSQIGAWVSKQ T0506 182 :AAAESEATRLNAIKGEASRLAVLAGAK 1g79A 147 :SSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASAS 1g79A 175 :PSFWGGFRVSLEQIEFWQGG T0506 229 :DLARLWFAERVETL 1g79A 199 :HDRFLYQRENDAWK T0506 249 :LAQLLK 1g79A 213 :IDRLAP Number of specific fragments extracted= 8 number of extra gaps= 0 total=1938 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1313237909.pdb -s /var/tmp/to_scwrl_1313237909.seq -o /var/tmp/from_scwrl_1313237909.pdb > /var/tmp/scwrl_1313237909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1313237909.pdb Number of alignments=240 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1g79A 24 :RRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLSLPDT 1g79A 126 :VMKYFHSRPRDSQIGAWVSKQ T0506 161 :NASNITPADLRTDLS 1g79A 147 :SSRISARGILESKFL T0506 186 :SEATRLNAIKG 1g79A 162 :ELKQKFQQGEV T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVETLKQF 1g79A 175 :PSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAW T0506 248 :ALAQLLK 1g79A 212 :KIDRLAP Number of specific fragments extracted= 8 number of extra gaps= 0 total=1946 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_705165458.pdb -s /var/tmp/to_scwrl_705165458.seq -o /var/tmp/from_scwrl_705165458.pdb > /var/tmp/scwrl_705165458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_705165458.pdb Number of alignments=241 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)V239 because last residue in template chain is (1g79A)P218 T0506 16 :IEPSAGAPFEAVRVARDVLHTS 1g79A 21 :GLRRRDLPADPLTLFERWLSQA T0506 38 :RTAALATLDP 1g79A 51 :TAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 119 :VPLAIARYI 1g79A 135 :RDSQIGAWV T0506 128 :ARYPKAKLYLS 1g79A 158 :SKFLELKQKFQ T0506 139 :LPDTRLYRLRTEGVQINGG 1g79A 175 :PSFWGGFRVSLEQIEFWQG T0506 166 :TPADL 1g79A 194 :GEHRL T0506 178 :E 1g79A 199 :H T0506 211 :R 1g79A 200 :D T0506 222 :IDLASASDLARLWFAER 1g79A 201 :RFLYQRENDAWKIDRLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1957 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_608613189.pdb -s /var/tmp/to_scwrl_608613189.seq -o /var/tmp/from_scwrl_608613189.pdb > /var/tmp/scwrl_608613189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_608613189.pdb Number of alignments=242 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1g79A)G20 Warning: unaligning (T0506)E237 because last residue in template chain is (1g79A)P218 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRT 1g79A 21 :GLRRRDLPADPLTLFERWLSQACE T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPF 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWH T0506 100 :LTLPRLTLVGRADRIGPDE 1g79A 107 :TLERQVMVIGKAERLSTLE T0506 119 :VPLAIARYI 1g79A 135 :RDSQIGAWV T0506 138 :S 1g79A 144 :S T0506 169 :DLRTDLSGAEELMAAAESEATRLN 1g79A 145 :KQSSRISARGILESKFLELKQKFQ T0506 207 :AK 1g79A 169 :QG T0506 209 :TGRWKITSIDPDGIDLAS 1g79A 175 :PSFWGGFRVSLEQIEFWQ T0506 227 :ASDLARLWFA 1g79A 208 :NDAWKIDRLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1967 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_942853510.pdb -s /var/tmp/to_scwrl_942853510.seq -o /var/tmp/from_scwrl_942853510.pdb > /var/tmp/scwrl_942853510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942853510.pdb Number of alignments=243 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)V239 because last residue in template chain is (1g79A)P218 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 1g79A 21 :GLRRRDLPADPLTLFERWLSQACEAKLADPT T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 59 :DEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 119 :VPLAIARYIARYPKAKL 1g79A 153 :RGILESKFLELKQKFQQ T0506 139 :LPDTRLYRLRTEGVQINGGP 1g79A 175 :PSFWGGFRVSLEQIEFWQGG T0506 167 :PA 1g79A 195 :EH T0506 208 :KTGRW 1g79A 197 :RLHDR T0506 223 :DLASASDLARLWFAER 1g79A 202 :FLYQRENDAWKIDRLA Number of specific fragments extracted= 8 number of extra gaps= 0 total=1975 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_849555244.pdb -s /var/tmp/to_scwrl_849555244.seq -o /var/tmp/from_scwrl_849555244.pdb > /var/tmp/scwrl_849555244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_849555244.pdb Number of alignments=244 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTA 1g79A 21 :GLRRRDLPADPLTLFERWLSQACEA T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPD 1g79A 110 :RQVMVIGKAERLSTL T0506 121 :LAIARYIARYPKAKLYL 1g79A 125 :EVMKYFHSRPRDSQIGA T0506 169 :DLRT 1g79A 142 :WVSK T0506 181 :MAAAESEATRLNAIKGEASRLAVLAGAK 1g79A 146 :QSSRISARGILESKFLELKQKFQQGEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1g79A 175 :PSFWGGFRVSLEQIEFWQGGEHR T0506 232 :RLWFAER 1g79A 202 :FLYQREN T0506 252 :LLK 1g79A 216 :LAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=1985 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_299473178.pdb -s /var/tmp/to_scwrl_299473178.seq -o /var/tmp/from_scwrl_299473178.pdb > /var/tmp/scwrl_299473178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_299473178.pdb Number of alignments=245 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIA 1g79A 126 :VMKYFHS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1989 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_547702817.pdb -s /var/tmp/to_scwrl_547702817.seq -o /var/tmp/from_scwrl_547702817.pdb > /var/tmp/scwrl_547702817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547702817.pdb Number of alignments=246 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIG 1g79A 110 :RQVMVIGKAERLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1992 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_400136748.pdb -s /var/tmp/to_scwrl_400136748.seq -o /var/tmp/from_scwrl_400136748.pdb > /var/tmp/scwrl_400136748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_400136748.pdb Number of alignments=247 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE Number of specific fragments extracted= 3 number of extra gaps= 0 total=1995 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1232188402.pdb -s /var/tmp/to_scwrl_1232188402.seq -o /var/tmp/from_scwrl_1232188402.pdb > /var/tmp/scwrl_1232188402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1232188402.pdb Number of alignments=248 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNI 1g79A 61 :HGQPYQRIVLL T0506 60 :GIEPDGT 1g79A 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIA 1g79A 126 :VMKYFHS Number of specific fragments extracted= 6 number of extra gaps= 0 total=2001 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1703925512.pdb -s /var/tmp/to_scwrl_1703925512.seq -o /var/tmp/from_scwrl_1703925512.pdb > /var/tmp/scwrl_1703925512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703925512.pdb Number of alignments=249 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNI 1g79A 61 :HGQPYQRIVLL T0506 60 :GIEPDGT 1g79A 73 :HYDEKGM T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 80 :VFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARY 1g79A 126 :VMKYF Number of specific fragments extracted= 6 number of extra gaps= 0 total=2007 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_892891947.pdb -s /var/tmp/to_scwrl_892891947.seq -o /var/tmp/from_scwrl_892891947.pdb > /var/tmp/scwrl_892891947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892891947.pdb Number of alignments=250 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1g79A 110 :RQVMVIGKAERLSTLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2010 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1383248422.pdb -s /var/tmp/to_scwrl_1383248422.seq -o /var/tmp/from_scwrl_1383248422.pdb > /var/tmp/scwrl_1383248422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1383248422.pdb Number of alignments=251 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARY 1g79A 126 :VMKYFHSRP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2014 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1906548092.pdb -s /var/tmp/to_scwrl_1906548092.seq -o /var/tmp/from_scwrl_1906548092.pdb > /var/tmp/scwrl_1906548092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1906548092.pdb Number of alignments=252 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 42 :LATLDP 1g79A 55 :VATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDEV 1g79A 110 :RQVMVIGKAERLSTLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2017 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_161747088.pdb -s /var/tmp/to_scwrl_161747088.seq -o /var/tmp/from_scwrl_161747088.pdb > /var/tmp/scwrl_161747088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161747088.pdb Number of alignments=253 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 16 :IEPSAGAPFEAVRVARDVLHTS 1g79A 21 :GLRRRDLPADPLTLFERWLSQA T0506 38 :RTAALATLDP 1g79A 51 :TAMVVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIARYIARYPKAKLYLS 1g79A 126 :VMKYFHSRPRDSQIGAW T0506 169 :DLRTDLSGAEELMAAAESE 1g79A 145 :KQSSRISARGILESKFLEL T0506 202 :AVLAGA 1g79A 164 :KQKFQQ T0506 209 :TGRWKITSIDPDGIDLASASD 1g79A 175 :PSFWGGFRVSLEQIEFWQGGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2025 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_744614006.pdb -s /var/tmp/to_scwrl_744614006.seq -o /var/tmp/from_scwrl_744614006.pdb > /var/tmp/scwrl_744614006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_744614006.pdb Number of alignments=254 # 1g79A read from all-align.a2m # found chain 1g79A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1g79A)G20 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRT 1g79A 21 :GLRRRDLPADPLTLFERWLSQACE T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPF 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWH T0506 100 :LTLPRLTLVGRADRIGPDE 1g79A 107 :TLERQVMVIGKAERLSTLE T0506 119 :VPLAIARYI 1g79A 135 :RDSQIGAWV T0506 138 :S 1g79A 144 :S T0506 169 :DLRTDLSGAEELMAAAESEATRLN 1g79A 145 :KQSSRISARGILESKFLELKQKFQ T0506 207 :AK 1g79A 169 :QG T0506 209 :TGRWKITSIDPDGIDLASASD 1g79A 175 :PSFWGGFRVSLEQIEFWQGGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=2034 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1484034448.pdb -s /var/tmp/to_scwrl_1484034448.seq -o /var/tmp/from_scwrl_1484034448.pdb > /var/tmp/scwrl_1484034448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1484034448.pdb Number of alignments=255 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AIA 1g79A 126 :VMK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2038 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_349872502.pdb -s /var/tmp/to_scwrl_349872502.seq -o /var/tmp/from_scwrl_349872502.pdb > /var/tmp/scwrl_349872502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349872502.pdb Number of alignments=256 # 1g79A read from all-align.a2m # found chain 1g79A in template set T0506 41 :ALATLDP 1g79A 54 :VVATVDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1g79A 61 :HGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLE T0506 103 :PRLTLVGRADRIGPDE 1g79A 110 :RQVMVIGKAERLSTLE T0506 122 :AI 1g79A 126 :VM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2042 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1118914309.pdb -s /var/tmp/to_scwrl_1118914309.seq -o /var/tmp/from_scwrl_1118914309.pdb > /var/tmp/scwrl_1118914309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118914309.pdb Number of alignments=257 1nrgA expands to /projects/compbio/data/pdb/1nrg.pdb.gz 1nrgA:Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 1442, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 1444, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 1446, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 1448, because occupancy 0.500 <= existing 0.500 in 1nrgA Skipped atom 1450, because occupancy 0.500 <= existing 0.500 in 1nrgA # 1nrgA read from all-align.a2m # adding 1nrgA to template set # found chain 1nrgA in template set Warning: unaligning (T0506)P6 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P7 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 9 :ITPRGTKIEPSAGAPFEAVR 1nrgA 52 :HLTSLDPVKQFAAWFEEAVQ T0506 31 :RDVLHTSRTAALATLDP 1nrgA 72 :CPDIGEANAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR T0506 104 :RLTLVGRADRIGPDEV 1nrgA 139 :QVRVEGPVKKLPEEEA T0506 121 :LAIARYIARYPKAKLYLSLPDTRL 1nrgA 155 :ECYFHSRPKSSQIGAVVSHQSSVI T0506 185 :ESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASD 1nrgA 179 :PDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQT T0506 230 :LARLWFAERVETLKQFEKALAQLLK 1nrgA 227 :HDRIVFRRGLPTGDSPLGPMTHRGE Number of specific fragments extracted= 7 number of extra gaps= 0 total=2049 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1500626793.pdb -s /var/tmp/to_scwrl_1500626793.seq -o /var/tmp/from_scwrl_1500626793.pdb > /var/tmp/scwrl_1500626793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500626793.pdb Number of alignments=258 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)P6 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P7 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 9 :ITPRGTKIEPSAGAPFEAVR 1nrgA 52 :HLTSLDPVKQFAAWFEEAVQ T0506 31 :RDVLHTSRTAALATLDP 1nrgA 72 :CPDIGEANAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR T0506 104 :RLTLVGRADRIGPDEV 1nrgA 139 :QVRVEGPVKKLPEEEA T0506 121 :LAIARYIARYPKAKLYLSLPDTRL 1nrgA 155 :ECYFHSRPKSSQIGAVVSHQSSVI T0506 191 :LNAIKGEASRL 1nrgA 185 :RKKNEELEQLY T0506 205 :AGAKT 1nrgA 196 :QDQEV T0506 210 :GRWKITSIDPDGIDLASASD 1nrgA 204 :KSWGGYVLYPQVMEFWQGQT T0506 230 :LARLWFAERVETLKQFEKALAQLL 1nrgA 227 :HDRIVFRRGLPTGDSPLGPMTHRG Number of specific fragments extracted= 9 number of extra gaps= 0 total=2058 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_637883763.pdb -s /var/tmp/to_scwrl_637883763.seq -o /var/tmp/from_scwrl_637883763.pdb > /var/tmp/scwrl_637883763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637883763.pdb Number of alignments=259 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 29 :VARDVLHTSRTAALATLDP 1nrgA 70 :VQCPDIGEANAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR T0506 104 :RLTLVGRADRIGPDEV 1nrgA 139 :QVRVEGPVKKLPEEEA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2061 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1363739697.pdb -s /var/tmp/to_scwrl_1363739697.seq -o /var/tmp/from_scwrl_1363739697.pdb > /var/tmp/scwrl_1363739697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1363739697.pdb Number of alignments=260 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 30 :ARDVLHTSRTAALATLDP 1nrgA 71 :QCPDIGEANAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR T0506 104 :RLTLVGRADRIGPDEVPLAIAR 1nrgA 139 :QVRVEGPVKKLPEEEAECYFHS T0506 127 :IARYPKAKLYLSLPDTRL 1nrgA 161 :RPKSSQIGAVVSHQSSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2065 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1989849506.pdb -s /var/tmp/to_scwrl_1989849506.seq -o /var/tmp/from_scwrl_1989849506.pdb > /var/tmp/scwrl_1989849506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1989849506.pdb Number of alignments=261 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)K15 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 17 :EPSAGAPFEAVRVARDVLHTS 1nrgA 52 :HLTSLDPVKQFAAWFEEAVQC T0506 38 :RTAALATLDP 1nrgA 79 :NAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR T0506 104 :RLTLVGRADRIGPDEVP 1nrgA 139 :QVRVEGPVKKLPEEEAE T0506 169 :DLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGR 1nrgA 156 :CYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQ T0506 212 :WKITSIDPDGIDLASASD 1nrgA 206 :WGGYVLYPQVMEFWQGQT T0506 230 :LARLWFAERVETLKQFEKALAQLLK 1nrgA 227 :HDRIVFRRGLPTGDSPLGPMTHRGE Number of specific fragments extracted= 7 number of extra gaps= 0 total=2072 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1240873724.pdb -s /var/tmp/to_scwrl_1240873724.seq -o /var/tmp/from_scwrl_1240873724.pdb > /var/tmp/scwrl_1240873724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1240873724.pdb Number of alignments=262 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)K15 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 17 :EPSAGAPFEAVR 1nrgA 52 :HLTSLDPVKQFA T0506 29 :VARD 1nrgA 69 :AVQC T0506 33 :VLHTSRTAALATLDP 1nrgA 74 :DIGEANAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR T0506 104 :RLTLVGRADRIGPDEVP 1nrgA 139 :QVRVEGPVKKLPEEEAE T0506 169 :DLRTDLSGAEELMAAAESEATRLNAI 1nrgA 156 :CYFHSRPKSSQIGAVVSHQSSVIPDR T0506 195 :KGE 1nrgA 197 :DQE T0506 206 :GAKTGRWKITSIDPDGIDLASASD 1nrgA 200 :VPKPKSWGGYVLYPQVMEFWQGQT T0506 230 :LARLWFAERVETLKQFEKAL 1nrgA 227 :HDRIVFRRGLPTGDSPLGPM T0506 250 :AQLLK 1nrgA 257 :ERLAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=2082 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1239554025.pdb -s /var/tmp/to_scwrl_1239554025.seq -o /var/tmp/from_scwrl_1239554025.pdb > /var/tmp/scwrl_1239554025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239554025.pdb Number of alignments=263 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)P219 because last residue in template chain is (1nrgA)P261 T0506 210 :GRWKITSID 1nrgA 252 :EDWLYERLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2083 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 38 :RTAALATLDP 1nrgA 79 :NAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR T0506 104 :RLTLVGRADRIGPDEVP 1nrgA 139 :QVRVEGPVKKLPEEEAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2086 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1897492123.pdb -s /var/tmp/to_scwrl_1897492123.seq -o /var/tmp/from_scwrl_1897492123.pdb > /var/tmp/scwrl_1897492123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1897492123.pdb Number of alignments=264 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 60 :GIEPDGTPFF 1nrgA 101 :GFGKDGFRFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2087 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2087 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD T0506 165 :ITPADLRTDLSGAEELMAAAESEATR 1nrgA 232 :FRRGLPTGDSPLGPMTHRGEEDWLYE T0506 251 :QLLK 1nrgA 258 :RLAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=2097 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1954564315.pdb -s /var/tmp/to_scwrl_1954564315.seq -o /var/tmp/from_scwrl_1954564315.pdb > /var/tmp/scwrl_1954564315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954564315.pdb Number of alignments=265 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)I194 because last residue in template chain is (1nrgA)P261 T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD T0506 165 :ITPADLRTDLSGAEELMAAAESEATRLNA 1nrgA 232 :FRRGLPTGDSPLGPMTHRGEEDWLYERLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=2106 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1796524803.pdb -s /var/tmp/to_scwrl_1796524803.seq -o /var/tmp/from_scwrl_1796524803.pdb > /var/tmp/scwrl_1796524803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1796524803.pdb Number of alignments=266 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)I194 because last residue in template chain is (1nrgA)P261 T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD T0506 165 :ITPADLRTDLSGAEELMAAAESEATRLNA 1nrgA 232 :FRRGLPTGDSPLGPMTHRGEEDWLYERLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=2115 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1744968174.pdb -s /var/tmp/to_scwrl_1744968174.seq -o /var/tmp/from_scwrl_1744968174.pdb > /var/tmp/scwrl_1744968174.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744968174.pdb Number of alignments=267 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNIT 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRI T0506 217 :IDPD 1nrgA 231 :VFRR T0506 227 :ASDLARLW 1nrgA 253 :DWLYERLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=2125 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1682234034.pdb -s /var/tmp/to_scwrl_1682234034.seq -o /var/tmp/from_scwrl_1682234034.pdb > /var/tmp/scwrl_1682234034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682234034.pdb Number of alignments=268 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIV T0506 224 :L 1nrgA 232 :F T0506 227 :ASDLARLW 1nrgA 253 :DWLYERLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=2135 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_574741598.pdb -s /var/tmp/to_scwrl_574741598.seq -o /var/tmp/from_scwrl_574741598.pdb > /var/tmp/scwrl_574741598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574741598.pdb Number of alignments=269 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)F235 because last residue in template chain is (1nrgA)P261 T0506 23 :PFEAVRVARDV 1nrgA 62 :FAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNIT 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRI T0506 213 :K 1nrgA 231 :V T0506 224 :LA 1nrgA 232 :FR T0506 227 :ASDLARLW 1nrgA 253 :DWLYERLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=2146 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1816075490.pdb -s /var/tmp/to_scwrl_1816075490.seq -o /var/tmp/from_scwrl_1816075490.pdb > /var/tmp/scwrl_1816075490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1816075490.pdb Number of alignments=270 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIV T0506 209 :TGRWKITSIDPDGIDLAS 1nrgA 232 :FRRGLPTGDSPLGPMTHR T0506 227 :ASDLARLW 1nrgA 253 :DWLYERLA Number of specific fragments extracted= 10 number of extra gaps= 0 total=2156 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_847988297.pdb -s /var/tmp/to_scwrl_847988297.seq -o /var/tmp/from_scwrl_847988297.pdb > /var/tmp/scwrl_847988297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847988297.pdb Number of alignments=271 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)I194 because last residue in template chain is (1nrgA)P261 T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD T0506 165 :ITPADLRTDLSGAEELMAAAESEATRLNA 1nrgA 232 :FRRGLPTGDSPLGPMTHRGEEDWLYERLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=2165 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1279907055.pdb -s /var/tmp/to_scwrl_1279907055.seq -o /var/tmp/from_scwrl_1279907055.pdb > /var/tmp/scwrl_1279907055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1279907055.pdb Number of alignments=272 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 Warning: unaligning (T0506)E237 because last residue in template chain is (1nrgA)P261 T0506 20 :AGAPFEAVRVARDVLH 1nrgA 52 :HLTSLDPVKQFAAWFE T0506 36 :TSRTAALATLDP 1nrgA 77 :EANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDG 1nrgA 102 :FGKDG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 107 :FRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDR T0506 222 :IDLAS 1nrgA 230 :IVFRR T0506 227 :ASDLARL 1nrgA 253 :DWLYERL T0506 236 :A 1nrgA 260 :A Number of specific fragments extracted= 11 number of extra gaps= 1 total=2176 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_277205033.pdb -s /var/tmp/to_scwrl_277205033.seq -o /var/tmp/from_scwrl_277205033.pdb > /var/tmp/scwrl_277205033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277205033.pdb Number of alignments=273 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)E237 because last residue in template chain is (1nrgA)P261 T0506 19 :SAG 1nrgA 53 :LTS T0506 23 :PFEAVRVARDV 1nrgA 62 :FAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPD 1nrgA 102 :FGKD T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 106 :GFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD T0506 221 :GIDLAS 1nrgA 229 :RIVFRR T0506 227 :ASDLARLWFA 1nrgA 251 :EEDWLYERLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=2187 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1790841806.pdb -s /var/tmp/to_scwrl_1790841806.seq -o /var/tmp/from_scwrl_1790841806.pdb > /var/tmp/scwrl_1790841806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790841806.pdb Number of alignments=274 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)F235 because last residue in template chain is (1nrgA)P261 T0506 21 :GA 1nrgA 55 :SL T0506 23 :PFEAVRVARDV 1nrgA 62 :FAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDR T0506 222 :IDLAS 1nrgA 230 :IVFRR T0506 227 :ASDLARLW 1nrgA 253 :DWLYERLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=2198 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2129462299.pdb -s /var/tmp/to_scwrl_2129462299.seq -o /var/tmp/from_scwrl_2129462299.pdb > /var/tmp/scwrl_2129462299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2129462299.pdb Number of alignments=275 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)F235 because last residue in template chain is (1nrgA)P261 T0506 19 :SAGAPFEAVRVARDV 1nrgA 58 :PVKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDR T0506 212 :WK 1nrgA 230 :IV T0506 224 :LA 1nrgA 232 :FR T0506 227 :ASDLARLW 1nrgA 253 :DWLYERLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=2209 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_576678211.pdb -s /var/tmp/to_scwrl_576678211.seq -o /var/tmp/from_scwrl_576678211.pdb > /var/tmp/scwrl_576678211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_576678211.pdb Number of alignments=276 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)R12 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 13 :GTK 1nrgA 52 :HLT T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD T0506 165 :ITPADLRTDLSGAEELMAAAESEAT 1nrgA 232 :FRRGLPTGDSPLGPMTHRGEEDWLY Number of specific fragments extracted= 11 number of extra gaps= 0 total=2220 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_191060976.pdb -s /var/tmp/to_scwrl_191060976.seq -o /var/tmp/from_scwrl_191060976.pdb > /var/tmp/scwrl_191060976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_191060976.pdb Number of alignments=277 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 17 :EP 1nrgA 57 :DP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIV Number of specific fragments extracted= 9 number of extra gaps= 0 total=2229 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_382115401.pdb -s /var/tmp/to_scwrl_382115401.seq -o /var/tmp/from_scwrl_382115401.pdb > /var/tmp/scwrl_382115401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_382115401.pdb Number of alignments=278 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD T0506 165 :ITPADLRTDLSGAEELMAAAESE 1nrgA 232 :FRRGLPTGDSPLGPMTHRGEEDW Number of specific fragments extracted= 10 number of extra gaps= 0 total=2239 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1808866613.pdb -s /var/tmp/to_scwrl_1808866613.seq -o /var/tmp/from_scwrl_1808866613.pdb > /var/tmp/scwrl_1808866613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1808866613.pdb Number of alignments=279 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=2248 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1894986488.pdb -s /var/tmp/to_scwrl_1894986488.seq -o /var/tmp/from_scwrl_1894986488.pdb > /var/tmp/scwrl_1894986488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1894986488.pdb Number of alignments=280 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=2257 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1275007347.pdb -s /var/tmp/to_scwrl_1275007347.seq -o /var/tmp/from_scwrl_1275007347.pdb > /var/tmp/scwrl_1275007347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275007347.pdb Number of alignments=281 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDR Number of specific fragments extracted= 9 number of extra gaps= 0 total=2266 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1044631389.pdb -s /var/tmp/to_scwrl_1044631389.seq -o /var/tmp/from_scwrl_1044631389.pdb > /var/tmp/scwrl_1044631389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1044631389.pdb Number of alignments=282 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)R12 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 13 :GTK 1nrgA 52 :HLT T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASNI 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDR Number of specific fragments extracted= 10 number of extra gaps= 0 total=2276 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1654050934.pdb -s /var/tmp/to_scwrl_1654050934.seq -o /var/tmp/from_scwrl_1654050934.pdb > /var/tmp/scwrl_1654050934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1654050934.pdb Number of alignments=283 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 15 :K 1nrgA 54 :T T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD Number of specific fragments extracted= 10 number of extra gaps= 0 total=2286 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1436754436.pdb -s /var/tmp/to_scwrl_1436754436.seq -o /var/tmp/from_scwrl_1436754436.pdb > /var/tmp/scwrl_1436754436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1436754436.pdb Number of alignments=284 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)R12 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 13 :GT 1nrgA 52 :HL T0506 22 :APFEAVRVARDVLH 1nrgA 54 :TSLDPVKQFAAWFE T0506 36 :TSRTAALATLDP 1nrgA 77 :EANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDG 1nrgA 102 :FGKDG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 107 :FRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=2295 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1789245394.pdb -s /var/tmp/to_scwrl_1789245394.seq -o /var/tmp/from_scwrl_1789245394.pdb > /var/tmp/scwrl_1789245394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1789245394.pdb Number of alignments=285 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 24 :FEAVRVARDV 1nrgA 63 :AAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPD 1nrgA 102 :FGKD T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 106 :GFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD Number of specific fragments extracted= 8 number of extra gaps= 0 total=2303 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_990601736.pdb -s /var/tmp/to_scwrl_990601736.seq -o /var/tmp/from_scwrl_990601736.pdb > /var/tmp/scwrl_990601736.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_990601736.pdb Number of alignments=286 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD Number of specific fragments extracted= 9 number of extra gaps= 0 total=2312 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1786626938.pdb -s /var/tmp/to_scwrl_1786626938.seq -o /var/tmp/from_scwrl_1786626938.pdb > /var/tmp/scwrl_1786626938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1786626938.pdb Number of alignments=287 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)R12 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 13 :GTK 1nrgA 52 :HLT T0506 16 :IEP 1nrgA 56 :LDP T0506 20 :AGAPFEAVRVARDV 1nrgA 59 :VKQFAAWFEEAVQC T0506 34 :LHTSRTAALATLDP 1nrgA 75 :IGEANAMCLATCTR T0506 49 :SGYPYTTATNIG 1nrgA 89 :DGKPSARMLLLK T0506 61 :IEPDGT 1nrgA 102 :FGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1nrgA 138 :RQVRVEGPVKKLPEEEAECYFHSRPK T0506 129 :RYPK 1nrgA 194 :LYQD T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNRLHD Number of specific fragments extracted= 10 number of extra gaps= 0 total=2322 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_760676057.pdb -s /var/tmp/to_scwrl_760676057.seq -o /var/tmp/from_scwrl_760676057.pdb > /var/tmp/scwrl_760676057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_760676057.pdb Number of alignments=288 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 23 :PFEAVRVARDVLHTSRTA 1nrgA 52 :HLTSLDPVKQFAAWFEEA T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 161 :NASNITPADLRTDLSGAEELMAA 1nrgA 175 :SSVIPDREYLRKKNEELEQLYQD T0506 204 :LAGAKTGRWKITSIDPDGIDLASASDLA 1nrgA 198 :QEVPKPKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETLKQFEK 1nrgA 229 :RIVFRRGLPTGDSPLG T0506 248 :ALAQLLK 1nrgA 255 :LYERLAP Number of specific fragments extracted= 9 number of extra gaps= 0 total=2331 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_343744882.pdb -s /var/tmp/to_scwrl_343744882.seq -o /var/tmp/from_scwrl_343744882.pdb > /var/tmp/scwrl_343744882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_343744882.pdb Number of alignments=289 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 23 :PFEAVRVARDVLHTSRTAA 1nrgA 52 :HLTSLDPVKQFAAWFEEAV T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKA 1nrgA 154 :AECYFHSRPKS T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAK 1nrgA 165 :SQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETLKQFEKAL 1nrgA 229 :RIVFRRGLPTGDSPLGPM T0506 250 :AQLLK 1nrgA 257 :ERLAP Number of specific fragments extracted= 9 number of extra gaps= 0 total=2340 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_277027054.pdb -s /var/tmp/to_scwrl_277027054.seq -o /var/tmp/from_scwrl_277027054.pdb > /var/tmp/scwrl_277027054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277027054.pdb Number of alignments=290 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 23 :PFEAVRVARDVLHTSRTAA 1nrgA 52 :HLTSLDPVKQFAAWFEEAV T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 177 :AEELMAAAESEATRLNAIKGEASRLAVLAGAK 1nrgA 170 :VVSHQSSVIPDREYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETLKQFEKAL 1nrgA 229 :RIVFRRGLPTGDSPLGPM T0506 250 :AQLLK 1nrgA 257 :ERLAP Number of specific fragments extracted= 9 number of extra gaps= 0 total=2349 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2124415754.pdb -s /var/tmp/to_scwrl_2124415754.seq -o /var/tmp/from_scwrl_2124415754.pdb > /var/tmp/scwrl_2124415754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124415754.pdb Number of alignments=291 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 29 :VARDVLHTSRTAA 1nrgA 58 :PVKQFAAWFEEAV T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGTP 1nrgA 101 :GFGKDGFR T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 109 :FFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 160 :RNASNITPADL 1nrgA 174 :QSSVIPDREYL T0506 196 :GEASRLAVLAGAK 1nrgA 185 :RKKNEELEQLYQD T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETLK 1nrgA 229 :RIVFRRGLPTGD Number of specific fragments extracted= 11 number of extra gaps= 0 total=2360 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_186110741.pdb -s /var/tmp/to_scwrl_186110741.seq -o /var/tmp/from_scwrl_186110741.pdb > /var/tmp/scwrl_186110741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_186110741.pdb Number of alignments=292 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 29 :VARDVLHTSRTA 1nrgA 58 :PVKQFAAWFEEA T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGT 1nrgA 101 :GFGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 165 :ITPADLRTDL 1nrgA 172 :SHQSSVIPDR T0506 193 :AIKGEASRLAVLAGAK 1nrgA 182 :EYLRKKNEELEQLYQD T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETL 1nrgA 229 :RIVFRRGLPTG Number of specific fragments extracted= 11 number of extra gaps= 0 total=2371 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1517900779.pdb -s /var/tmp/to_scwrl_1517900779.seq -o /var/tmp/from_scwrl_1517900779.pdb > /var/tmp/scwrl_1517900779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1517900779.pdb Number of alignments=293 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 19 :SAGAPFEAVRVARDVLHT 1nrgA 52 :HLTSLDPVKQFAAWFEEA T0506 37 :SRTAALATLDP 1nrgA 78 :ANAMCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 171 :RTDL 1nrgA 171 :VSHQ T0506 182 :AAAESEATRLNAIKGEASRLAVLAGAK 1nrgA 175 :SSVIPDREYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ T0506 229 :DLARLWFAERVETLKQF 1nrgA 226 :LHDRIVFRRGLPTGDSP Number of specific fragments extracted= 9 number of extra gaps= 0 total=2380 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1216486132.pdb -s /var/tmp/to_scwrl_1216486132.seq -o /var/tmp/from_scwrl_1216486132.pdb > /var/tmp/scwrl_1216486132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1216486132.pdb Number of alignments=294 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 23 :PFEAVRVARDVLHTSRTAA 1nrgA 52 :HLTSLDPVKQFAAWFEEAV T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 140 :PD 1nrgA 173 :HQ T0506 161 :NASNIT 1nrgA 175 :SSVIPD T0506 188 :ATRLNAIKGEASRLAVLAGAK 1nrgA 181 :REYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETLKQFEKAL 1nrgA 229 :RIVFRRGLPTGDSPLGPM T0506 251 :QLLK 1nrgA 258 :RLAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=2391 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2083602864.pdb -s /var/tmp/to_scwrl_2083602864.seq -o /var/tmp/from_scwrl_2083602864.pdb > /var/tmp/scwrl_2083602864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083602864.pdb Number of alignments=295 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 23 :PFEAVRVARDVLHTSRTA 1nrgA 52 :HLTSLDPVKQFAAWFEEA T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 160 :RNASNITPADLRTDLSGAE 1nrgA 174 :QSSVIPDREYLRKKNEELE T0506 189 :TRLNAIK 1nrgA 193 :QLYQDQE T0506 207 :AK 1nrgA 200 :VP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETLKQFEK 1nrgA 229 :RIVFRRGLPTGDSPLG T0506 248 :ALAQLLK 1nrgA 255 :LYERLAP Number of specific fragments extracted= 11 number of extra gaps= 0 total=2402 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1324981447.pdb -s /var/tmp/to_scwrl_1324981447.seq -o /var/tmp/from_scwrl_1324981447.pdb > /var/tmp/scwrl_1324981447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324981447.pdb Number of alignments=296 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 20 :AGAPFEAVRVARDVLHTS 1nrgA 52 :HLTSLDPVKQFAAWFEEA T0506 38 :RTAALATLDP 1nrgA 79 :NAMCLATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGTP 1nrgA 101 :GFGKDGFR T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 109 :FFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 168 :ADLRTDLSGAEELMAAAESE 1nrgA 172 :SHQSSVIPDREYLRKKNEEL T0506 203 :VLAGAK 1nrgA 192 :EQLYQD T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ T0506 229 :DLARLWFAERVETL 1nrgA 226 :LHDRIVFRRGLPTG T0506 252 :LLK 1nrgA 259 :LAP Number of specific fragments extracted= 12 number of extra gaps= 0 total=2414 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_865527289.pdb -s /var/tmp/to_scwrl_865527289.seq -o /var/tmp/from_scwrl_865527289.pdb > /var/tmp/scwrl_865527289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_865527289.pdb Number of alignments=297 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 20 :AGAPFEAVRVARDVLHTSRT 1nrgA 52 :HLTSLDPVKQFAAWFEEAVQ T0506 40 :AALATLDP 1nrgA 81 :MCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYW T0506 99 :ALTLPRLTLVGRADRIGPDE 1nrgA 134 :EPLNRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLY 1nrgA 154 :AECYFHSRPKSSQI T0506 166 :TPADLRTDLSGAEELMAAAESEATRLN 1nrgA 170 :VVSHQSSVIPDREYLRKKNEELEQLYQ T0506 208 :K 1nrgA 197 :D T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ T0506 229 :DLARLWFAERVETL 1nrgA 226 :LHDRIVFRRGLPTG Number of specific fragments extracted= 9 number of extra gaps= 0 total=2423 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1681087392.pdb -s /var/tmp/to_scwrl_1681087392.seq -o /var/tmp/from_scwrl_1681087392.pdb > /var/tmp/scwrl_1681087392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681087392.pdb Number of alignments=298 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 23 :PFEAVRVARDVLHTSRTAA 1nrgA 52 :HLTSLDPVKQFAAWFEEAV T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGT 1nrgA 101 :GFGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 170 :LRTDLSGAEELM 1nrgA 170 :VVSHQSSVIPDR T0506 189 :TRLNAIKGEASRLAVLAGA 1nrgA 182 :EYLRKKNEELEQLYQDQEV T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ T0506 229 :DLARLWFAERVETLKQF 1nrgA 226 :LHDRIVFRRGLPTGDSP Number of specific fragments extracted= 11 number of extra gaps= 0 total=2434 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_859731835.pdb -s /var/tmp/to_scwrl_859731835.seq -o /var/tmp/from_scwrl_859731835.pdb > /var/tmp/scwrl_859731835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_859731835.pdb Number of alignments=299 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 23 :PFEAVRVARDVLHTSRTA 1nrgA 52 :HLTSLDPVKQFAAWFEEA T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEP T0506 101 :TLPRLTLVGRADRIGPDE 1nrgA 136 :LNRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYL 1nrgA 154 :AECYFHSRPKSSQIG T0506 169 :DLRT 1nrgA 169 :AVVS T0506 180 :LMAAAESEATRLNAIKGEASRLAVLAGAK 1nrgA 173 :HQSSVIPDREYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVETLKQF 1nrgA 229 :RIVFRRGLPTGDSP T0506 252 :LLK 1nrgA 259 :LAP Number of specific fragments extracted= 10 number of extra gaps= 0 total=2444 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1440268886.pdb -s /var/tmp/to_scwrl_1440268886.seq -o /var/tmp/from_scwrl_1440268886.pdb > /var/tmp/scwrl_1440268886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1440268886.pdb Number of alignments=300 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAK 1nrgA 154 :AECYFHSRPKSS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2448 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1349679235.pdb -s /var/tmp/to_scwrl_1349679235.seq -o /var/tmp/from_scwrl_1349679235.pdb > /var/tmp/scwrl_1349679235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349679235.pdb Number of alignments=301 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKA 1nrgA 154 :AECYFHSRPKS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2452 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1707720131.pdb -s /var/tmp/to_scwrl_1707720131.seq -o /var/tmp/from_scwrl_1707720131.pdb > /var/tmp/scwrl_1707720131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1707720131.pdb Number of alignments=302 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKA 1nrgA 154 :AECYFHSRPKS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2456 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_572692295.pdb -s /var/tmp/to_scwrl_572692295.seq -o /var/tmp/from_scwrl_572692295.pdb > /var/tmp/scwrl_572692295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_572692295.pdb Number of alignments=303 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGTP 1nrgA 101 :GFGKDGFR T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 109 :FFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKA 1nrgA 154 :AECYFHSRPKS Number of specific fragments extracted= 6 number of extra gaps= 0 total=2462 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1626884268.pdb -s /var/tmp/to_scwrl_1626884268.seq -o /var/tmp/from_scwrl_1626884268.pdb > /var/tmp/scwrl_1626884268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626884268.pdb Number of alignments=304 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGT 1nrgA 101 :GFGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAK 1nrgA 154 :AECYFHSRPKSS Number of specific fragments extracted= 6 number of extra gaps= 0 total=2468 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1351078290.pdb -s /var/tmp/to_scwrl_1351078290.seq -o /var/tmp/from_scwrl_1351078290.pdb > /var/tmp/scwrl_1351078290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351078290.pdb Number of alignments=305 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 171 :RTDL 1nrgA 171 :VSHQ T0506 182 :AAAESEATRLNAIKGEASRLAVLAGAK 1nrgA 175 :SSVIPDREYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ T0506 229 :DLARLWFAERVET 1nrgA 226 :LHDRIVFRRGLPT Number of specific fragments extracted= 8 number of extra gaps= 0 total=2476 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_554670948.pdb -s /var/tmp/to_scwrl_554670948.seq -o /var/tmp/from_scwrl_554670948.pdb > /var/tmp/scwrl_554670948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554670948.pdb Number of alignments=306 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 140 :PD 1nrgA 173 :HQ T0506 161 :NASNIT 1nrgA 175 :SSVIPD T0506 188 :ATRLNAIKGEASRLAVLAGAK 1nrgA 181 :REYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAERVET 1nrgA 229 :RIVFRRGLPT Number of specific fragments extracted= 9 number of extra gaps= 0 total=2485 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_56078832.pdb -s /var/tmp/to_scwrl_56078832.seq -o /var/tmp/from_scwrl_56078832.pdb > /var/tmp/scwrl_56078832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_56078832.pdb Number of alignments=307 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 42 :LATLDP 1nrgA 83 :LATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLN T0506 103 :PRLTLVGRADRIGPDE 1nrgA 138 :RQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKA 1nrgA 154 :AECYFHSRPKS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2489 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1542139266.pdb -s /var/tmp/to_scwrl_1542139266.seq -o /var/tmp/from_scwrl_1542139266.pdb > /var/tmp/scwrl_1542139266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1542139266.pdb Number of alignments=308 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGTP 1nrgA 101 :GFGKDGFR T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 109 :FFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 168 :ADLRTDLSGAEELMAAAESE 1nrgA 172 :SHQSSVIPDREYLRKKNEEL T0506 203 :VLAGAK 1nrgA 192 :EQLYQD T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ T0506 229 :DLARLWFAERVET 1nrgA 226 :LHDRIVFRRGLPT Number of specific fragments extracted= 10 number of extra gaps= 0 total=2499 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_936786349.pdb -s /var/tmp/to_scwrl_936786349.seq -o /var/tmp/from_scwrl_936786349.pdb > /var/tmp/scwrl_936786349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_936786349.pdb Number of alignments=309 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1nrgA)E49 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1nrgA)T51 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1nrgA)T51 T0506 20 :AGAPFEAVRVARDVLHTSRT 1nrgA 52 :HLTSLDPVKQFAAWFEEAVQ T0506 40 :AALATLDP 1nrgA 81 :MCLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYW T0506 99 :ALTLPRLTLVGRADRIGPDE 1nrgA 134 :EPLNRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLY 1nrgA 154 :AECYFHSRPKSSQI T0506 166 :TPADLRTDLSGAEELMAAAESEATRLN 1nrgA 170 :VVSHQSSVIPDREYLRKKNEELEQLYQ T0506 208 :K 1nrgA 197 :D T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ T0506 229 :DLARLWFAERVE 1nrgA 226 :LHDRIVFRRGLP Number of specific fragments extracted= 9 number of extra gaps= 0 total=2508 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1864945445.pdb -s /var/tmp/to_scwrl_1864945445.seq -o /var/tmp/from_scwrl_1864945445.pdb > /var/tmp/scwrl_1864945445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864945445.pdb Number of alignments=310 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNI 1nrgA 89 :DGKPSARMLLL T0506 60 :GIEPDGT 1nrgA 101 :GFGKDGF T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGK 1nrgA 108 :RFFTNFESRKGKELDSNPFASLVFYWEPL T0506 102 :LPRLTLVGRADRIGPDE 1nrgA 137 :NRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYLS 1nrgA 154 :AECYFHSRPKSSQIGA T0506 170 :LRTDLSGAEELM 1nrgA 170 :VVSHQSSVIPDR T0506 189 :TRLNAIKGEASRLAVLAGA 1nrgA 182 :EYLRKKNEELEQLYQDQEV T0506 209 :TGRWKITSIDPDGIDLASAS 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=2517 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1289642108.pdb -s /var/tmp/to_scwrl_1289642108.seq -o /var/tmp/from_scwrl_1289642108.pdb > /var/tmp/scwrl_1289642108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1289642108.pdb Number of alignments=311 # 1nrgA read from all-align.a2m # found chain 1nrgA in template set T0506 41 :ALATLDP 1nrgA 82 :CLATCTR T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1nrgA 89 :DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEP T0506 101 :TLPRLTLVGRADRIGPDE 1nrgA 136 :LNRQVRVEGPVKKLPEEE T0506 123 :IARYIARYPKAKLYL 1nrgA 154 :AECYFHSRPKSSQIG T0506 169 :DLRTD 1nrgA 169 :AVVSH T0506 181 :MAAAESEATRLNAIKGEASRLAVLAGAK 1nrgA 174 :QSSVIPDREYLRKKNEELEQLYQDQEVP T0506 209 :TGRWKITSIDPDGIDLASASDLA 1nrgA 203 :PKSWGGYVLYPQVMEFWQGQTNR T0506 232 :RLWFAER 1nrgA 229 :RIVFRRG Number of specific fragments extracted= 8 number of extra gaps= 0 total=2525 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_64310049.pdb -s /var/tmp/to_scwrl_64310049.seq -o /var/tmp/from_scwrl_64310049.pdb > /var/tmp/scwrl_64310049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64310049.pdb Number of alignments=312 1rfeA expands to /projects/compbio/data/pdb/1rfe.pdb.gz 1rfeA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 250, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 252, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 254, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 256, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 258, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 260, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 262, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 264, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 266, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 268, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 282, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 284, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 286, because occupancy 0.350 <= existing 0.650 in 1rfeA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: OD for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1077, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 1079, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 1081, because occupancy 0.350 <= existing 0.650 in 1rfeA Skipped atom 1083, because occupancy 0.350 <= existing 0.650 in 1rfeA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rfeA read from all-align.a2m # adding 1rfeA to template set # found chain 1rfeA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)T241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 24 :FEA 1rfeA 4 :KQR T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIEP 1rfeA 44 :YAVID T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 1rfeA 49 :GEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDT T0506 199 :SRLAVLAG 1rfeA 84 :LRGVSFEG T0506 213 :K 1rfeA 92 :V T0506 216 :SIDPDGIDLASASDLARLWFAERVE 1rfeA 95 :IVEEPEALHRVGVSVWERYTGPYTD T0506 244 :QFEKA 1rfeA 123 :PMVDQ Number of specific fragments extracted= 9 number of extra gaps= 2 total=2534 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_762093188.pdb -s /var/tmp/to_scwrl_762093188.seq -o /var/tmp/from_scwrl_762093188.pdb > /var/tmp/scwrl_762093188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762093188.pdb Number of alignments=313 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)T241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 24 :FEA 1rfeA 4 :KQR T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDT T0506 213 :K 1rfeA 92 :V T0506 216 :SIDPDGIDLASASDLARLWFAERVE 1rfeA 95 :IVEEPEALHRVGVSVWERYTGPYTD T0506 244 :QFEKA 1rfeA 123 :PMVDQ Number of specific fragments extracted= 8 number of extra gaps= 2 total=2542 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_796209396.pdb -s /var/tmp/to_scwrl_796209396.seq -o /var/tmp/from_scwrl_796209396.pdb > /var/tmp/scwrl_796209396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796209396.pdb Number of alignments=314 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 30 :ARDVLHTSRTAALATLDP 1rfeA 16 :IADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIEP 1rfeA 44 :YAVID T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 1rfeA 49 :GEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDT T0506 102 :LPRLTLVGR 1rfeA 84 :LRGVSFEGV T0506 113 :RIGPDEVPLAIARYI 1rfeA 95 :IVEEPEALHRVGVSV T0506 128 :AR 1rfeA 118 :TD T0506 133 :AKLYLSLPDTRLYRLRTEGVQI 1rfeA 123 :PMVDQMMNKRVGVRIVARRTRS Number of specific fragments extracted= 8 number of extra gaps= 2 total=2550 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1501064485.pdb -s /var/tmp/to_scwrl_1501064485.seq -o /var/tmp/from_scwrl_1501064485.pdb > /var/tmp/scwrl_1501064485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501064485.pdb Number of alignments=315 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 29 :VARDVLHTSRTAALATLDP 1rfeA 15 :EIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDT T0506 102 :LPRLTLVGR 1rfeA 84 :LRGVSFEGV T0506 113 :RIGPDEVPLAIA 1rfeA 95 :IVEEPEALHRVG T0506 125 :RYIARYPKA 1rfeA 108 :SVWERYTGP T0506 134 :KLYLSLPDTRLYRLRTEGVQ 1rfeA 124 :MVDQMMNKRVGVRIVARRTR Number of specific fragments extracted= 8 number of extra gaps= 2 total=2558 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_403854935.pdb -s /var/tmp/to_scwrl_403854935.seq -o /var/tmp/from_scwrl_403854935.pdb > /var/tmp/scwrl_403854935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_403854935.pdb Number of alignments=316 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L242 because last residue in template chain is (1rfeA)A162 T0506 1 :MLDVAPPVITPR 1rfeA 4 :KQRADIVMSEAE T0506 30 :ARDVLHTSRTAALATLDP 1rfeA 16 :IADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIEP 1rfeA 44 :YAVID T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 1rfeA 49 :GEIWLETKAKSQKAVNLRRDPRVSFLLEDGD T0506 98 :DALTLPRLTLVGR 1rfeA 80 :TYDTLRGVSFEGV T0506 113 :RIGPDEV 1rfeA 95 :IVEEPEA T0506 120 :PLAIARYIARY 1rfeA 103 :HRVGVSVWERY T0506 133 :AKLY 1rfeA 123 :PMVD T0506 207 :AKTGRWKITSIDPDGIDLASASDLARLWFAERVET 1rfeA 127 :QMMNKRVGVRIVARRTRSWDHRKLGLPHMSVGGST Number of specific fragments extracted= 10 number of extra gaps= 2 total=2568 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1786811131.pdb -s /var/tmp/to_scwrl_1786811131.seq -o /var/tmp/from_scwrl_1786811131.pdb > /var/tmp/scwrl_1786811131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1786811131.pdb Number of alignments=317 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L242 because last residue in template chain is (1rfeA)A162 T0506 1 :MLDVAPPVITPR 1rfeA 4 :KQRADIVMSEAE T0506 30 :ARDVLHTSRTAALATLDP 1rfeA 16 :IADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIEP 1rfeA 44 :YAVID T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 1rfeA 49 :GEIWLETKAKSQKAVNLRRDPRVSFLLEDGD T0506 98 :DALTLPRLTLVGR 1rfeA 80 :TYDTLRGVSFEGV T0506 113 :RIGPDEV 1rfeA 95 :IVEEPEA T0506 120 :PLAIARYIARYPKA 1rfeA 103 :HRVGVSVWERYTGP T0506 134 :KLY 1rfeA 124 :MVD T0506 207 :AKTGRWKITSIDPDGIDLASASDLARLWFAERVET 1rfeA 127 :QMMNKRVGVRIVARRTRSWDHRKLGLPHMSVGGST Number of specific fragments extracted= 10 number of extra gaps= 2 total=2578 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1140207776.pdb -s /var/tmp/to_scwrl_1140207776.seq -o /var/tmp/from_scwrl_1140207776.pdb > /var/tmp/scwrl_1140207776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140207776.pdb Number of alignments=318 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 31 :RDVLHTSRTAALATLDP 1rfeA 17 :ADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIEP 1rfeA 44 :YAVID T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 1rfeA 49 :GEIWLETKAKSQKAVNLRRDPRVSFLLEDGD T0506 98 :DALTLPRLTLVGR 1rfeA 80 :TYDTLRGVSFEGV T0506 113 :RIGPDEV 1rfeA 95 :IVEEPEA T0506 120 :PLAIARYIARY 1rfeA 103 :HRVGVSVWERY T0506 133 :AKLYLSLPDTRLYRLRTEGV 1rfeA 123 :PMVDQMMNKRVGVRIVARRT Number of specific fragments extracted= 8 number of extra gaps= 2 total=2586 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1164530992.pdb -s /var/tmp/to_scwrl_1164530992.seq -o /var/tmp/from_scwrl_1164530992.pdb > /var/tmp/scwrl_1164530992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164530992.pdb Number of alignments=319 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 31 :RDVLHTSRTAALATLDP 1rfeA 17 :ADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIEP 1rfeA 44 :YAVID T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 1rfeA 49 :GEIWLETKAKSQKAVNLRRDPRVSFLLEDGD T0506 98 :DALTLPRLTLVGR 1rfeA 80 :TYDTLRGVSFEGV T0506 113 :RIGPDEV 1rfeA 95 :IVEEPEA T0506 120 :PLAIARYIARY 1rfeA 103 :HRVGVSVWERY T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGG 1rfeA 123 :PMVDQMMNKRVGVRIVARRTRSWDH Number of specific fragments extracted= 8 number of extra gaps= 2 total=2594 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2130556013.pdb -s /var/tmp/to_scwrl_2130556013.seq -o /var/tmp/from_scwrl_2130556013.pdb > /var/tmp/scwrl_2130556013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130556013.pdb Number of alignments=320 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 T0506 32 :DVLHTSRTAALATLDP 1rfeA 18 :DFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2598 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1417234831.pdb -s /var/tmp/to_scwrl_1417234831.seq -o /var/tmp/from_scwrl_1417234831.pdb > /var/tmp/scwrl_1417234831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1417234831.pdb Number of alignments=321 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 T0506 31 :RDVLHTSRTAALATLDP 1rfeA 17 :ADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV Number of specific fragments extracted= 5 number of extra gaps= 1 total=2603 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1141463099.pdb -s /var/tmp/to_scwrl_1141463099.seq -o /var/tmp/from_scwrl_1141463099.pdb > /var/tmp/scwrl_1141463099.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1141463099.pdb Number of alignments=322 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)S186 because last residue in template chain is (1rfeA)A162 T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 4 :KQRADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGPAR 1rfeA 130 :NKRVGVRIVARRTRSWDHRKL T0506 175 :SGAEELMAAAE 1rfeA 151 :GLPHMSVGGST Number of specific fragments extracted= 11 number of extra gaps= 2 total=2614 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_169183107.pdb -s /var/tmp/to_scwrl_169183107.seq -o /var/tmp/from_scwrl_169183107.pdb > /var/tmp/scwrl_169183107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169183107.pdb Number of alignments=323 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)A188 because last residue in template chain is (1rfeA)A162 T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 4 :KQRADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGP 1rfeA 130 :NKRVGVRIVARRTRSWDHR T0506 175 :SGAEELMAAAESE 1rfeA 149 :KLGLPHMSVGGST Number of specific fragments extracted= 11 number of extra gaps= 2 total=2625 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_787651964.pdb -s /var/tmp/to_scwrl_787651964.seq -o /var/tmp/from_scwrl_787651964.pdb > /var/tmp/scwrl_787651964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787651964.pdb Number of alignments=324 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)A188 because last residue in template chain is (1rfeA)A162 T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 4 :KQRADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGPA 1rfeA 130 :NKRVGVRIVARRTRSWDHRK T0506 176 :GAEELMAAAESE 1rfeA 150 :LGLPHMSVGGST Number of specific fragments extracted= 11 number of extra gaps= 2 total=2636 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_210465586.pdb -s /var/tmp/to_scwrl_210465586.seq -o /var/tmp/from_scwrl_210465586.pdb > /var/tmp/scwrl_210465586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210465586.pdb Number of alignments=325 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 9 :ITPRGTK 1rfeA 4 :KQRADIV T0506 25 :EAVRVARDVLHTSRTAALATLDP 1rfeA 11 :MSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 140 :PDTRLYRLRTEGVQINGGPA 1rfeA 130 :NKRVGVRIVARRTRSWDHRK T0506 220 :DGIDLAS 1rfeA 150 :LGLPHMS Number of specific fragments extracted= 11 number of extra gaps= 2 total=2647 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_105302325.pdb -s /var/tmp/to_scwrl_105302325.seq -o /var/tmp/from_scwrl_105302325.pdb > /var/tmp/scwrl_105302325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_105302325.pdb Number of alignments=326 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)R171 because last residue in template chain is (1rfeA)A162 T0506 21 :GAPF 1rfeA 4 :KQRA T0506 25 :EAVRVARDVLHTSRTAALATLDP 1rfeA 11 :MSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARYPK 1rfeA 102 :LHRVGVSVWERYTG T0506 139 :L 1rfeA 116 :P T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD T0506 162 :ASNITPADL 1rfeA 153 :PHMSVGGST Number of specific fragments extracted= 11 number of extra gaps= 2 total=2658 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2112633411.pdb -s /var/tmp/to_scwrl_2112633411.seq -o /var/tmp/from_scwrl_2112633411.pdb > /var/tmp/scwrl_2112633411.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2112633411.pdb Number of alignments=327 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)G176 because last residue in template chain is (1rfeA)A162 T0506 9 :ITPRGTKIE 1rfeA 4 :KQRADIVMS T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :S 1rfeA 123 :P T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD T0506 157 :GPAR 1rfeA 156 :SVGG T0506 169 :D 1rfeA 160 :S T0506 175 :S 1rfeA 161 :T Number of specific fragments extracted= 14 number of extra gaps= 2 total=2672 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1075992874.pdb -s /var/tmp/to_scwrl_1075992874.seq -o /var/tmp/from_scwrl_1075992874.pdb > /var/tmp/scwrl_1075992874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075992874.pdb Number of alignments=328 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)G176 because last residue in template chain is (1rfeA)A162 T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 4 :KQRADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD T0506 157 :GPARN 1rfeA 151 :GLPHM T0506 163 :S 1rfeA 156 :S T0506 166 :TPAD 1rfeA 157 :VGGS T0506 175 :S 1rfeA 161 :T Number of specific fragments extracted= 14 number of extra gaps= 2 total=2686 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1786389717.pdb -s /var/tmp/to_scwrl_1786389717.seq -o /var/tmp/from_scwrl_1786389717.pdb > /var/tmp/scwrl_1786389717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1786389717.pdb Number of alignments=329 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)A188 because last residue in template chain is (1rfeA)A162 T0506 9 :ITPRGTKI 1rfeA 4 :KQRADIVM T0506 26 :AVRVARDVLHTSRTAALATLDP 1rfeA 12 :SEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PK 1rfeA 116 :PY T0506 135 :LY 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGPA 1rfeA 130 :NKRVGVRIVARRTRSWDHRK T0506 176 :GAEELMAAAESE 1rfeA 150 :LGLPHMSVGGST Number of specific fragments extracted= 12 number of extra gaps= 2 total=2698 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_824881599.pdb -s /var/tmp/to_scwrl_824881599.seq -o /var/tmp/from_scwrl_824881599.pdb > /var/tmp/scwrl_824881599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_824881599.pdb Number of alignments=330 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)M181 because last residue in template chain is (1rfeA)A162 T0506 9 :ITPRGTKIE 1rfeA 4 :KQRADIVMS T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD T0506 157 :GPARN 1rfeA 151 :GLPHM T0506 175 :SGAEEL 1rfeA 156 :SVGGST Number of specific fragments extracted= 13 number of extra gaps= 2 total=2711 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_368778115.pdb -s /var/tmp/to_scwrl_368778115.seq -o /var/tmp/from_scwrl_368778115.pdb > /var/tmp/scwrl_368778115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368778115.pdb Number of alignments=331 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)N161 because last residue in template chain is (1rfeA)A162 T0506 9 :ITPRGTKIEP 1rfeA 4 :KQRADIVMSE T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGP 1rfeA 95 :IVEE T0506 117 :DEVPLAIARYIARYPK 1rfeA 100 :EALHRVGVSVWERYTG T0506 133 :A 1rfeA 117 :Y T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD T0506 157 :GPAR 1rfeA 158 :GGST Number of specific fragments extracted= 11 number of extra gaps= 2 total=2722 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_988585306.pdb -s /var/tmp/to_scwrl_988585306.seq -o /var/tmp/from_scwrl_988585306.pdb > /var/tmp/scwrl_988585306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_988585306.pdb Number of alignments=332 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)G176 because last residue in template chain is (1rfeA)A162 T0506 9 :ITPRGTKIE 1rfeA 4 :KQRADIVMS T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD T0506 157 :GPA 1rfeA 151 :GLP T0506 163 :SNITPAD 1rfeA 154 :HMSVGGS T0506 175 :S 1rfeA 161 :T Number of specific fragments extracted= 14 number of extra gaps= 2 total=2736 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_385118083.pdb -s /var/tmp/to_scwrl_385118083.seq -o /var/tmp/from_scwrl_385118083.pdb > /var/tmp/scwrl_385118083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_385118083.pdb Number of alignments=333 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)T166 because last residue in template chain is (1rfeA)A162 T0506 9 :ITPRGT 1rfeA 4 :KQRADI T0506 24 :FEAVRVARDVLHTSRTAALATLDP 1rfeA 10 :VMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD T0506 157 :GPAR 1rfeA 151 :GLPH T0506 164 :NI 1rfeA 160 :ST Number of specific fragments extracted= 13 number of extra gaps= 2 total=2749 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_941470410.pdb -s /var/tmp/to_scwrl_941470410.seq -o /var/tmp/from_scwrl_941470410.pdb > /var/tmp/scwrl_941470410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_941470410.pdb Number of alignments=334 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 21 :GAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 7 :ADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGPA 1rfeA 130 :NKRVGVRIVARRTRSWDHRK Number of specific fragments extracted= 10 number of extra gaps= 2 total=2759 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_467985928.pdb -s /var/tmp/to_scwrl_467985928.seq -o /var/tmp/from_scwrl_467985928.pdb > /var/tmp/scwrl_467985928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467985928.pdb Number of alignments=335 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 5 :QRADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD Number of specific fragments extracted= 10 number of extra gaps= 2 total=2769 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1736196373.pdb -s /var/tmp/to_scwrl_1736196373.seq -o /var/tmp/from_scwrl_1736196373.pdb > /var/tmp/scwrl_1736196373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1736196373.pdb Number of alignments=336 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 22 :APFEAVRVARDVLHTSRTAALATLDP 1rfeA 8 :DIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGP 1rfeA 130 :NKRVGVRIVARRTRSWDHR Number of specific fragments extracted= 10 number of extra gaps= 2 total=2779 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1496141357.pdb -s /var/tmp/to_scwrl_1496141357.seq -o /var/tmp/from_scwrl_1496141357.pdb > /var/tmp/scwrl_1496141357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1496141357.pdb Number of alignments=337 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 25 :EAVRVARDVLHTSRTAALATLDP 1rfeA 11 :MSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 140 :PDTRLYRLRTEGVQINGGP 1rfeA 130 :NKRVGVRIVARRTRSWDHR Number of specific fragments extracted= 9 number of extra gaps= 2 total=2788 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_524064760.pdb -s /var/tmp/to_scwrl_524064760.seq -o /var/tmp/from_scwrl_524064760.pdb > /var/tmp/scwrl_524064760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_524064760.pdb Number of alignments=338 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 25 :EAVRVARDVLHTSRTAALATLDP 1rfeA 11 :MSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARYPK 1rfeA 102 :LHRVGVSVWERYTG T0506 139 :L 1rfeA 116 :P T0506 140 :PDTRLYRLRTEGVQINGG 1rfeA 130 :NKRVGVRIVARRTRSWDH Number of specific fragments extracted= 9 number of extra gaps= 2 total=2797 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1130851992.pdb -s /var/tmp/to_scwrl_1130851992.seq -o /var/tmp/from_scwrl_1130851992.pdb > /var/tmp/scwrl_1130851992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130851992.pdb Number of alignments=339 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 12 :RGTK 1rfeA 7 :ADIV T0506 25 :EAVRVARDVLHTSRTAALATLDP 1rfeA 11 :MSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :S 1rfeA 123 :P T0506 140 :PDTRLYRLRTEGVQINGGP 1rfeA 130 :NKRVGVRIVARRTRSWDHR Number of specific fragments extracted= 11 number of extra gaps= 2 total=2808 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_285444059.pdb -s /var/tmp/to_scwrl_285444059.seq -o /var/tmp/from_scwrl_285444059.pdb > /var/tmp/scwrl_285444059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285444059.pdb Number of alignments=340 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 6 :RADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQING 1rfeA 130 :NKRVGVRIVARRTRSWD Number of specific fragments extracted= 10 number of extra gaps= 2 total=2818 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_241526559.pdb -s /var/tmp/to_scwrl_241526559.seq -o /var/tmp/from_scwrl_241526559.pdb > /var/tmp/scwrl_241526559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_241526559.pdb Number of alignments=341 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 25 :EAVRVARDVLHTSRTAALATLDP 1rfeA 11 :MSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PK 1rfeA 116 :PY T0506 135 :LY 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGP 1rfeA 130 :NKRVGVRIVARRTRSWDHR Number of specific fragments extracted= 10 number of extra gaps= 2 total=2828 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_273010454.pdb -s /var/tmp/to_scwrl_273010454.seq -o /var/tmp/from_scwrl_273010454.pdb > /var/tmp/scwrl_273010454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_273010454.pdb Number of alignments=342 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 9 :ITPRGTKIE 1rfeA 4 :KQRADIVMS T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGPA 1rfeA 130 :NKRVGVRIVARRTRSWDHRK Number of specific fragments extracted= 11 number of extra gaps= 2 total=2839 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_349754109.pdb -s /var/tmp/to_scwrl_349754109.seq -o /var/tmp/from_scwrl_349754109.pdb > /var/tmp/scwrl_349754109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349754109.pdb Number of alignments=343 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 9 :ITPRGTKIEP 1rfeA 4 :KQRADIVMSE T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGP 1rfeA 95 :IVEE T0506 117 :DEVPLAIARYIARYPK 1rfeA 100 :EALHRVGVSVWERYTG T0506 133 :A 1rfeA 117 :Y T0506 140 :PDTRLYRLRTEGVQINGGPA 1rfeA 130 :NKRVGVRIVARRTRSWDHRK Number of specific fragments extracted= 10 number of extra gaps= 2 total=2849 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1003619747.pdb -s /var/tmp/to_scwrl_1003619747.seq -o /var/tmp/from_scwrl_1003619747.pdb > /var/tmp/scwrl_1003619747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1003619747.pdb Number of alignments=344 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 11 :PRGTKI 1rfeA 6 :RADIVM T0506 26 :AVRVARDVLHTSRTAALATLDP 1rfeA 12 :SEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGP 1rfeA 130 :NKRVGVRIVARRTRSWDHR Number of specific fragments extracted= 11 number of extra gaps= 2 total=2860 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1069219850.pdb -s /var/tmp/to_scwrl_1069219850.seq -o /var/tmp/from_scwrl_1069219850.pdb > /var/tmp/scwrl_1069219850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1069219850.pdb Number of alignments=345 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 11 :PRG 1rfeA 6 :RAD T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 1rfeA 9 :IVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGIE 1rfeA 44 :YAVI T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 1rfeA 48 :DGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTL T0506 103 :PRLTLVGR 1rfeA 85 :RGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 131 :PKAK 1rfeA 116 :PYTD T0506 138 :SL 1rfeA 123 :PM T0506 140 :PDTRLYRLRTEGVQINGGP 1rfeA 130 :NKRVGVRIVARRTRSWDHR Number of specific fragments extracted= 11 number of extra gaps= 2 total=2871 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1850818594.pdb -s /var/tmp/to_scwrl_1850818594.seq -o /var/tmp/from_scwrl_1850818594.pdb > /var/tmp/scwrl_1850818594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1850818594.pdb Number of alignments=346 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)G176 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)E178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L253 because last residue in template chain is (1rfeA)A162 T0506 8 :VITPRGTKIEPSAGA 1rfeA 4 :KQRADIVMSEAEIAD T0506 33 :VLHTSRTAALATLDP 1rfeA 19 :FVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 121 :LAIA 1rfeA 101 :ALHR T0506 161 :NASNITPADLRTDLS 1rfeA 105 :VGVSVWERYTGPYTD T0506 179 :ELMAAAES 1rfeA 123 :PMVDQMMN T0506 218 :DPDGIDLASASDLARLWFAERVETLKQFE 1rfeA 131 :KRVGVRIVARRTRSWDHRKLGLPHMSVGG T0506 251 :QL 1rfeA 160 :ST Number of specific fragments extracted= 12 number of extra gaps= 2 total=2883 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1407474681.pdb -s /var/tmp/to_scwrl_1407474681.seq -o /var/tmp/from_scwrl_1407474681.pdb > /var/tmp/scwrl_1407474681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407474681.pdb Number of alignments=347 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)R200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L249 because last residue in template chain is (1rfeA)A162 T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLDP 1rfeA 4 :KQRADIVMSEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPD 1rfeA 95 :IVEEP T0506 178 :EELMAAAESEATRLNAIKGE 1rfeA 100 :EALHRVGVSVWERYTGPYTD T0506 201 :LAVLAGAK 1rfeA 123 :PMVDQMMN T0506 219 :PDGIDLASASDLARLWFAERVETLKQFEKA 1rfeA 132 :RVGVRIVARRTRSWDHRKLGLPHMSVGGST Number of specific fragments extracted= 9 number of extra gaps= 2 total=2892 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_708547334.pdb -s /var/tmp/to_scwrl_708547334.seq -o /var/tmp/from_scwrl_708547334.pdb > /var/tmp/scwrl_708547334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708547334.pdb Number of alignments=348 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)R200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L249 because last residue in template chain is (1rfeA)A162 T0506 8 :VITPRGTKIE 1rfeA 4 :KQRADIVMSE T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 180 :LMAAAESEATRLNAIKGE 1rfeA 102 :LHRVGVSVWERYTGPYTD T0506 201 :LAVLAGAK 1rfeA 123 :PMVDQMMN T0506 218 :DPDGIDLASASDLARLWFAERVETLKQFEKA 1rfeA 131 :KRVGVRIVARRTRSWDHRKLGLPHMSVGGST Number of specific fragments extracted= 10 number of extra gaps= 2 total=2902 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_843542725.pdb -s /var/tmp/to_scwrl_843542725.seq -o /var/tmp/from_scwrl_843542725.pdb > /var/tmp/scwrl_843542725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843542725.pdb Number of alignments=349 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)R200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L253 because last residue in template chain is (1rfeA)A162 T0506 17 :EPSAGAPFEA 1rfeA 4 :KQRADIVMSE T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 192 :NAIKGE 1rfeA 114 :TGPYTD T0506 201 :LAVLAGAK 1rfeA 123 :PMVDQMMN T0506 219 :PDGIDLASASDLARLWFAERVETL 1rfeA 132 :RVGVRIVARRTRSWDHRKLGLPHM T0506 243 :KQF 1rfeA 158 :GGS T0506 252 :L 1rfeA 161 :T Number of specific fragments extracted= 13 number of extra gaps= 2 total=2915 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_424522027.pdb -s /var/tmp/to_scwrl_424522027.seq -o /var/tmp/from_scwrl_424522027.pdb > /var/tmp/scwrl_424522027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_424522027.pdb Number of alignments=350 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)L2 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)R200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)A231 because last residue in template chain is (1rfeA)A162 T0506 3 :DVAPPVITP 1rfeA 4 :KQRADIVMS T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 179 :ELMAAAESEATRLNAIKGE 1rfeA 101 :ALHRVGVSVWERYTGPYTD T0506 201 :LAVLAGAK 1rfeA 123 :PMVDQMMN T0506 209 :TGRWKITSIDP 1rfeA 137 :IVARRTRSWDH T0506 220 :DGI 1rfeA 150 :LGL T0506 223 :DLASASDL 1rfeA 154 :HMSVGGST Number of specific fragments extracted= 12 number of extra gaps= 2 total=2927 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_691619700.pdb -s /var/tmp/to_scwrl_691619700.seq -o /var/tmp/from_scwrl_691619700.pdb > /var/tmp/scwrl_691619700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691619700.pdb Number of alignments=351 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)G176 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)E178 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L253 because last residue in template chain is (1rfeA)A162 T0506 8 :VITPR 1rfeA 4 :KQRAD T0506 22 :APFE 1rfeA 9 :IVMS T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYI 1rfeA 102 :LHRVGVSVW T0506 167 :PADLRTDLS 1rfeA 111 :ERYTGPYTD T0506 179 :ELMAA 1rfeA 123 :PMVDQ T0506 206 :GAK 1rfeA 128 :MMN T0506 218 :DPDGIDLASASDLARLWFAERVETL 1rfeA 131 :KRVGVRIVARRTRSWDHRKLGLPHM T0506 252 :L 1rfeA 161 :T Number of specific fragments extracted= 14 number of extra gaps= 2 total=2941 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_113293909.pdb -s /var/tmp/to_scwrl_113293909.seq -o /var/tmp/from_scwrl_113293909.pdb > /var/tmp/scwrl_113293909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_113293909.pdb Number of alignments=352 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)V4 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)R200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L253 because last residue in template chain is (1rfeA)A162 T0506 17 :EPSAGAPFE 1rfeA 4 :KQRADIVMS T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 179 :ELMAAAESEATRLNAIKGE 1rfeA 101 :ALHRVGVSVWERYTGPYTD T0506 201 :LAVLAGAK 1rfeA 123 :PMVDQMMN T0506 219 :PDGIDLASASDLARLWFAERVETLK 1rfeA 132 :RVGVRIVARRTRSWDHRKLGLPHMS T0506 252 :L 1rfeA 161 :T Number of specific fragments extracted= 11 number of extra gaps= 2 total=2952 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1565985127.pdb -s /var/tmp/to_scwrl_1565985127.seq -o /var/tmp/from_scwrl_1565985127.pdb > /var/tmp/scwrl_1565985127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1565985127.pdb Number of alignments=353 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)L2 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A183 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)E185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)Q244 because last residue in template chain is (1rfeA)A162 T0506 3 :DVAPPV 1rfeA 4 :KQRADI T0506 14 :TKIEPSA 1rfeA 10 :VMSEAEI T0506 31 :RDVLHTSRTAALATLDP 1rfeA 17 :ADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARY 1rfeA 102 :LHRVGVSVWERY T0506 170 :L 1rfeA 114 :T T0506 178 :EELMA 1rfeA 115 :GPYTD T0506 186 :SEATRLNA 1rfeA 123 :PMVDQMMN T0506 218 :DPDGIDLASASDLARLWFAERVETLK 1rfeA 131 :KRVGVRIVARRTRSWDHRKLGLPHMS Number of specific fragments extracted= 13 number of extra gaps= 2 total=2965 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_860802808.pdb -s /var/tmp/to_scwrl_860802808.seq -o /var/tmp/from_scwrl_860802808.pdb > /var/tmp/scwrl_860802808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_860802808.pdb Number of alignments=354 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)Q244 because last residue in template chain is (1rfeA)A162 T0506 14 :TKIEPSAGAPFEAVR 1rfeA 4 :KQRADIVMSEAEIAD T0506 33 :VLHTSRTAALATLDP 1rfeA 19 :FVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARYP 1rfeA 102 :LHRVGVSVWERYT T0506 135 :LYLS 1rfeA 123 :PMVD T0506 139 :LPDTRLYRLRTEGVQI 1rfeA 129 :MNKRVGVRIVARRTRS T0506 164 :NITPADLRTDL 1rfeA 145 :WDHRKLGLPHM T0506 176 :G 1rfeA 156 :S T0506 239 :VETLK 1rfeA 157 :VGGST Number of specific fragments extracted= 13 number of extra gaps= 2 total=2978 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_900945873.pdb -s /var/tmp/to_scwrl_900945873.seq -o /var/tmp/from_scwrl_900945873.pdb > /var/tmp/scwrl_900945873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900945873.pdb Number of alignments=355 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)Q244 because last residue in template chain is (1rfeA)A162 T0506 15 :KIEPSAGAPFEAVR 1rfeA 4 :KQRADIVMSEAEIA T0506 32 :DVLHTSRTAALATLDP 1rfeA 18 :DFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPD 1rfeA 95 :IVEEP T0506 118 :EVPLAIARYIARY 1rfeA 101 :ALHRVGVSVWERY T0506 135 :LYLS 1rfeA 123 :PMVD T0506 139 :LPDTRLYRLRTEGVQINGG 1rfeA 129 :MNKRVGVRIVARRTRSWDH T0506 168 :ADLRTDLSGA 1rfeA 148 :RKLGLPHMSV T0506 240 :ETLK 1rfeA 158 :GGST Number of specific fragments extracted= 12 number of extra gaps= 2 total=2990 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1776450713.pdb -s /var/tmp/to_scwrl_1776450713.seq -o /var/tmp/from_scwrl_1776450713.pdb > /var/tmp/scwrl_1776450713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776450713.pdb Number of alignments=356 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L253 because last residue in template chain is (1rfeA)A162 T0506 8 :VITPRGTK 1rfeA 4 :KQRADIVM T0506 25 :E 1rfeA 12 :S T0506 27 :VRVARDVLHTSRTAALATLDP 1rfeA 13 :EAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARYP 1rfeA 102 :LHRVGVSVWERYT T0506 135 :LYLS 1rfeA 123 :PMVD T0506 139 :LPDTRLYRLRTEGVQINGG 1rfeA 129 :MNKRVGVRIVARRTRSWDH T0506 167 :P 1rfeA 148 :R T0506 169 :DLRTDLSGA 1rfeA 149 :KLGLPHMSV T0506 227 :ASD 1rfeA 158 :GGS T0506 243 :K 1rfeA 161 :T Number of specific fragments extracted= 15 number of extra gaps= 2 total=3005 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_966105133.pdb -s /var/tmp/to_scwrl_966105133.seq -o /var/tmp/from_scwrl_966105133.pdb > /var/tmp/scwrl_966105133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_966105133.pdb Number of alignments=357 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)L2 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)R200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 Warning: unaligning (T0506)L253 because last residue in template chain is (1rfeA)A162 T0506 3 :DV 1rfeA 4 :KQ T0506 7 :PVIT 1rfeA 6 :RADI T0506 14 :T 1rfeA 10 :V T0506 24 :F 1rfeA 11 :M T0506 26 :AVRVARDVLHTSRTAALATLDP 1rfeA 12 :SEAEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 179 :ELMAAAESEATRLNAIKGE 1rfeA 101 :ALHRVGVSVWERYTGPYTD T0506 201 :LAVLAGAK 1rfeA 123 :PMVDQMMN T0506 219 :PDGIDLASASDLARLWFAERVETL 1rfeA 132 :RVGVRIVARRTRSWDHRKLGLPHM T0506 252 :L 1rfeA 161 :T Number of specific fragments extracted= 14 number of extra gaps= 2 total=3019 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_866095637.pdb -s /var/tmp/to_scwrl_866095637.seq -o /var/tmp/from_scwrl_866095637.pdb > /var/tmp/scwrl_866095637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_866095637.pdb Number of alignments=358 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 33 :VLHTSRTAALATLDP 1rfeA 19 :FVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 121 :LAI 1rfeA 101 :ALH Number of specific fragments extracted= 7 number of extra gaps= 2 total=3026 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_704959941.pdb -s /var/tmp/to_scwrl_704959941.seq -o /var/tmp/from_scwrl_704959941.pdb > /var/tmp/scwrl_704959941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704959941.pdb Number of alignments=359 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 33 :VLHTSRTAALATLDP 1rfeA 19 :FVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE Number of specific fragments extracted= 6 number of extra gaps= 2 total=3032 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_605011203.pdb -s /var/tmp/to_scwrl_605011203.seq -o /var/tmp/from_scwrl_605011203.pdb > /var/tmp/scwrl_605011203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_605011203.pdb Number of alignments=360 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 33 :VLHTSRTAALATLDP 1rfeA 19 :FVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE Number of specific fragments extracted= 6 number of extra gaps= 2 total=3038 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1690977235.pdb -s /var/tmp/to_scwrl_1690977235.seq -o /var/tmp/from_scwrl_1690977235.pdb > /var/tmp/scwrl_1690977235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690977235.pdb Number of alignments=361 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 29 :VARDVLHTSRTAALATLDP 1rfeA 15 :EIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLA 1rfeA 102 :LHRV Number of specific fragments extracted= 7 number of extra gaps= 2 total=3045 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1073738056.pdb -s /var/tmp/to_scwrl_1073738056.seq -o /var/tmp/from_scwrl_1073738056.pdb > /var/tmp/scwrl_1073738056.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073738056.pdb Number of alignments=362 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 30 :ARDVLHTSRTAALATLDP 1rfeA 16 :IADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 122 :AI 1rfeA 102 :LH Number of specific fragments extracted= 7 number of extra gaps= 2 total=3052 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1593596508.pdb -s /var/tmp/to_scwrl_1593596508.seq -o /var/tmp/from_scwrl_1593596508.pdb > /var/tmp/scwrl_1593596508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593596508.pdb Number of alignments=363 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYI 1rfeA 102 :LHRVGVSVW Number of specific fragments extracted= 7 number of extra gaps= 2 total=3059 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2076095318.pdb -s /var/tmp/to_scwrl_2076095318.seq -o /var/tmp/from_scwrl_2076095318.pdb > /var/tmp/scwrl_2076095318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2076095318.pdb Number of alignments=364 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)R200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 179 :ELMAAAESEATRLNAIKGE 1rfeA 101 :ALHRVGVSVWERYTGPYTD T0506 201 :LAVLAGAK 1rfeA 123 :PMVDQMMN Number of specific fragments extracted= 8 number of extra gaps= 2 total=3067 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2015208466.pdb -s /var/tmp/to_scwrl_2015208466.seq -o /var/tmp/from_scwrl_2015208466.pdb > /var/tmp/scwrl_2015208466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015208466.pdb Number of alignments=365 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 33 :VLHTSRTAALATLDP 1rfeA 19 :FVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE Number of specific fragments extracted= 6 number of extra gaps= 2 total=3073 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2061582436.pdb -s /var/tmp/to_scwrl_2061582436.seq -o /var/tmp/from_scwrl_2061582436.pdb > /var/tmp/scwrl_2061582436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061582436.pdb Number of alignments=366 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 14 :TKIEPSAGAPFEAVR 1rfeA 4 :KQRADIVMSEAEIAD T0506 33 :VLHTSRTAALATLDP 1rfeA 19 :FVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARYP 1rfeA 102 :LHRVGVSVWERYT T0506 135 :LYLS 1rfeA 123 :PMVD T0506 139 :LPDTRLYRLRTEGVQING 1rfeA 129 :MNKRVGVRIVARRTRSWD Number of specific fragments extracted= 10 number of extra gaps= 2 total=3083 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1664808044.pdb -s /var/tmp/to_scwrl_1664808044.seq -o /var/tmp/from_scwrl_1664808044.pdb > /var/tmp/scwrl_1664808044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664808044.pdb Number of alignments=367 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (1rfeA)T3 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 15 :KIEPSAGAPFEAVR 1rfeA 4 :KQRADIVMSEAEIA T0506 32 :DVLHTSRTAALATLDP 1rfeA 18 :DFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPD 1rfeA 95 :IVEEP T0506 118 :EVPLAIARYIARY 1rfeA 101 :ALHRVGVSVWERY T0506 135 :LYLS 1rfeA 123 :PMVD T0506 139 :LPDTRLYRLRTEGVQING 1rfeA 129 :MNKRVGVRIVARRTRSWD Number of specific fragments extracted= 10 number of extra gaps= 2 total=3093 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1363866176.pdb -s /var/tmp/to_scwrl_1363866176.seq -o /var/tmp/from_scwrl_1363866176.pdb > /var/tmp/scwrl_1363866176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1363866176.pdb Number of alignments=368 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rfeA)K122 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rfeA)K122 T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTY T0506 100 :LTLPRLTLVGR 1rfeA 82 :DTLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 119 :VPLAIARYIARYP 1rfeA 102 :LHRVGVSVWERYT T0506 135 :LYLS 1rfeA 123 :PMVD T0506 139 :LPDTRLYRLRTEGVQING 1rfeA 129 :MNKRVGVRIVARRTRSWD Number of specific fragments extracted= 9 number of extra gaps= 2 total=3102 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_438163550.pdb -s /var/tmp/to_scwrl_438163550.seq -o /var/tmp/from_scwrl_438163550.pdb > /var/tmp/scwrl_438163550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_438163550.pdb Number of alignments=369 # 1rfeA read from all-align.a2m # found chain 1rfeA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)W43 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)W43 Warning: unaligning (T0506)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rfeA)E94 Warning: unaligning (T0506)D112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rfeA)E94 T0506 28 :RVARDVLHTSRTAALATLDP 1rfeA 14 :AEIADFVNSSRTGTLATIGP T0506 49 :SGYPYTTA 1rfeA 34 :DGQPHLTA T0506 59 :IGI 1rfeA 44 :YAV T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1rfeA 47 :IDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYD T0506 101 :TLPRLTLVGR 1rfeA 83 :TLRGVSFEGV T0506 113 :RIGPDE 1rfeA 95 :IVEEPE T0506 122 :AIAR 1rfeA 102 :LHRV Number of specific fragments extracted= 7 number of extra gaps= 2 total=3109 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_648176390.pdb -s /var/tmp/to_scwrl_648176390.seq -o /var/tmp/from_scwrl_648176390.pdb > /var/tmp/scwrl_648176390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_648176390.pdb Number of alignments=370 1t9mA expands to /projects/compbio/data/pdb/1t9m.pdb.gz 1t9mA:Skipped atom 572, because occupancy 0.500 <= existing 0.500 in 1t9mA Skipped atom 574, because occupancy 0.500 <= existing 0.500 in 1t9mA Skipped atom 576, because occupancy 0.500 <= existing 0.500 in 1t9mA Skipped atom 578, because occupancy 0.500 <= existing 0.500 in 1t9mA # 1t9mA read from all-align.a2m # adding 1t9mA to template set # found chain 1t9mA in template set Warning: unaligning (T0506)K243 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)Q244 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDP 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQ T0506 104 :RLTLVGRADRIGP 1t9mA 109 :QIILNGRAERLPD T0506 220 :DGIDLASASDLARLWFAERVETL 1t9mA 122 :ERADAQWLSRPYQTHPMSIASRQ T0506 245 :FEKALAQLLK 1t9mA 147 :TLADIHALRA Number of specific fragments extracted= 5 number of extra gaps= 1 total=3114 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1649310236.pdb -s /var/tmp/to_scwrl_1649310236.seq -o /var/tmp/from_scwrl_1649310236.pdb > /var/tmp/scwrl_1649310236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1649310236.pdb Number of alignments=371 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDP 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQ T0506 104 :RLTLVGRADRIGP 1t9mA 109 :QIILNGRAERLPD T0506 210 :GRWKITSIDPDGIDLASASDL 1t9mA 172 :PGYCLFELCLESVEFWGNGTE T0506 231 :ARLWF 1t9mA 196 :ERLRY Number of specific fragments extracted= 5 number of extra gaps= 0 total=3119 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_679690109.pdb -s /var/tmp/to_scwrl_679690109.seq -o /var/tmp/from_scwrl_679690109.pdb > /var/tmp/scwrl_679690109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_679690109.pdb Number of alignments=372 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 31 :RDVLHTSRTAALATLDP 1t9mA 42 :RYGVREPRALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQ T0506 104 :RLTLVGRADRIGPDEV 1t9mA 109 :QIILNGRAERLPDERA Number of specific fragments extracted= 3 number of extra gaps= 0 total=3122 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_921186845.pdb -s /var/tmp/to_scwrl_921186845.seq -o /var/tmp/from_scwrl_921186845.pdb > /var/tmp/scwrl_921186845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921186845.pdb Number of alignments=373 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 31 :RDVLHTSRTAALATLDP 1t9mA 42 :RYGVREPRALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQ T0506 104 :RLTLVGRADRIGPDEVP 1t9mA 109 :QIILNGRAERLPDERAD T0506 125 :RYIARYPKAKLY 1t9mA 126 :AQWLSRPYQTHP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3126 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1999064345.pdb -s /var/tmp/to_scwrl_1999064345.seq -o /var/tmp/from_scwrl_1999064345.pdb > /var/tmp/scwrl_1999064345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1999064345.pdb Number of alignments=374 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)A188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)T189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)R238 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)F245 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)E246 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAG 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHAD T0506 75 :TLHARNMETDARISVTLAPFGKG 1t9mA 85 :SQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEV 1t9mA 108 :QQIILNGRAERLPDERA T0506 168 :ADLRTDLSGAEELMAAAESE 1t9mA 125 :DAQWLSRPYQTHPMSIASRQ T0506 190 :RLNAIKGEASRLAVLAGAK 1t9mA 147 :TLADIHALRAEARRLAETD T0506 210 :GRWKITSIDPDGIDLASASDL 1t9mA 172 :PGYCLFELCLESVEFWGNGTE T0506 231 :ARLWFA 1t9mA 196 :ERLRYD T0506 244 :Q 1t9mA 204 :E T0506 247 :KALAQLLK 1t9mA 207 :WKHRYLQP Number of specific fragments extracted= 9 number of extra gaps= 3 total=3135 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1683309855.pdb -s /var/tmp/to_scwrl_1683309855.seq -o /var/tmp/from_scwrl_1683309855.pdb > /var/tmp/scwrl_1683309855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1683309855.pdb Number of alignments=375 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)A188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)T189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)R238 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)F245 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)E246 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVD T0506 48 :VSGYPYT 1t9mA 58 :GQGRPST T0506 55 :TATNIGIEPDGTPFFFAAG 1t9mA 66 :IVVIAELGERGVVFATHAD T0506 75 :TLHARNMETDARISVTLAPFGKG 1t9mA 85 :SQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEV 1t9mA 108 :QQIILNGRAERLPDERA T0506 174 :LSGAEELMAAAESE 1t9mA 131 :RPYQTHPMSIASRQ T0506 190 :RLNAIKGEASRLAVLAGA 1t9mA 147 :TLADIHALRAEARRLAET T0506 208 :KTGRWKITSIDPDGIDLASASDL 1t9mA 170 :RPPGYCLFELCLESVEFWGNGTE T0506 231 :ARLWFA 1t9mA 196 :ERLRYD T0506 244 :Q 1t9mA 204 :E T0506 247 :KALAQLLK 1t9mA 207 :WKHRYLQP Number of specific fragments extracted= 11 number of extra gaps= 3 total=3146 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1990406694.pdb -s /var/tmp/to_scwrl_1990406694.seq -o /var/tmp/from_scwrl_1990406694.pdb > /var/tmp/scwrl_1990406694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990406694.pdb Number of alignments=376 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 38 :RTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAG 1t9mA 49 :RALALATVDGQGRPSTRIVVIAELGERGVVFATHAD T0506 75 :TLHARNMETDARISVTLAPFGKG 1t9mA 85 :SQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEV 1t9mA 108 :QQIILNGRAERLPDERA Number of specific fragments extracted= 3 number of extra gaps= 0 total=3149 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1702399292.pdb -s /var/tmp/to_scwrl_1702399292.seq -o /var/tmp/from_scwrl_1702399292.pdb > /var/tmp/scwrl_1702399292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1702399292.pdb Number of alignments=377 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 35 :HTSRTAALATLD 1t9mA 46 :REPRALALATVD T0506 48 :VSGYPYT 1t9mA 58 :GQGRPST T0506 55 :TATNIGIEPDGTPFFFAAG 1t9mA 66 :IVVIAELGERGVVFATHAD T0506 75 :TLHARNMETDARISVTLAPFGKG 1t9mA 85 :SQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEV 1t9mA 108 :QQIILNGRAERLPDERA Number of specific fragments extracted= 5 number of extra gaps= 0 total=3154 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_943300890.pdb -s /var/tmp/to_scwrl_943300890.seq -o /var/tmp/from_scwrl_943300890.pdb > /var/tmp/scwrl_943300890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943300890.pdb Number of alignments=378 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 191 :LNAIKGEASRLAVLAG 1t9mA 151 :IHALRAEARRLAETDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=3155 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3155 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)L170 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)R171 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)A182 because last residue in template chain is (1t9mA)P214 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNASNITPAD 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLHERLRYD T0506 172 :T 1t9mA 204 :E T0506 175 :SGAEELM 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 12 number of extra gaps= 2 total=3167 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_551470382.pdb -s /var/tmp/to_scwrl_551470382.seq -o /var/tmp/from_scwrl_551470382.pdb > /var/tmp/scwrl_551470382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_551470382.pdb Number of alignments=379 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)L170 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)R171 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)A182 because last residue in template chain is (1t9mA)P214 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAKLYLSL 1t9mA 160 :RLAETDGPLPR T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPAD 1t9mA 172 :PGYCLFELCLESVEFWGNGTERLHERLRYD T0506 172 :T 1t9mA 204 :E T0506 175 :SGAEELM 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 12 number of extra gaps= 2 total=3179 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_398458370.pdb -s /var/tmp/to_scwrl_398458370.seq -o /var/tmp/from_scwrl_398458370.pdb > /var/tmp/scwrl_398458370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_398458370.pdb Number of alignments=380 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)L170 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)R171 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)A182 because last residue in template chain is (1t9mA)P214 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNASNITPAD 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLHERLRYD T0506 172 :T 1t9mA 204 :E T0506 175 :SGAEELM 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 12 number of extra gaps= 2 total=3191 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1367822917.pdb -s /var/tmp/to_scwrl_1367822917.seq -o /var/tmp/from_scwrl_1367822917.pdb > /var/tmp/scwrl_1367822917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1367822917.pdb Number of alignments=381 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTKI 1t9mA 12 :TGTIEAPFPEFEAPP T0506 17 :EP 1t9mA 28 :NP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNAS 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLH T0506 211 :RWKITS 1t9mA 196 :ERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 13 number of extra gaps= 2 total=3204 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1243090081.pdb -s /var/tmp/to_scwrl_1243090081.seq -o /var/tmp/from_scwrl_1243090081.pdb > /var/tmp/scwrl_1243090081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243090081.pdb Number of alignments=382 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQING 1t9mA 167 :PLPRPPGYCLFELCLESVEFWG T0506 157 :GPAR 1t9mA 190 :GTER T0506 209 :TGRWKITS 1t9mA 194 :LHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 14 number of extra gaps= 2 total=3218 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_511752279.pdb -s /var/tmp/to_scwrl_511752279.seq -o /var/tmp/from_scwrl_511752279.pdb > /var/tmp/scwrl_511752279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_511752279.pdb Number of alignments=383 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNA 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERL T0506 210 :GRWKITS 1t9mA 195 :HERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 13 number of extra gaps= 2 total=3231 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_786324398.pdb -s /var/tmp/to_scwrl_786324398.seq -o /var/tmp/from_scwrl_786324398.pdb > /var/tmp/scwrl_786324398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786324398.pdb Number of alignments=384 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARN 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTER T0506 209 :TGRWKITS 1t9mA 194 :LHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 13 number of extra gaps= 2 total=3244 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2103892889.pdb -s /var/tmp/to_scwrl_2103892889.seq -o /var/tmp/from_scwrl_2103892889.pdb > /var/tmp/scwrl_2103892889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2103892889.pdb Number of alignments=385 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I165 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)T166 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)A168 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)D169 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)A177 because last residue in template chain is (1t9mA)P214 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 131 :PKA 1t9mA 164 :TDG T0506 135 :LYLSLPDTRLYRLRTEGVQING 1t9mA 167 :PLPRPPGYCLFELCLESVEFWG T0506 157 :GPAR 1t9mA 190 :GTER T0506 161 :NASN 1t9mA 198 :LRYD T0506 167 :P 1t9mA 204 :E T0506 170 :LRTDLSG 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 14 number of extra gaps= 2 total=3258 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1412698151.pdb -s /var/tmp/to_scwrl_1412698151.seq -o /var/tmp/from_scwrl_1412698151.pdb > /var/tmp/scwrl_1412698151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412698151.pdb Number of alignments=386 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IE 1t9mA 72 :LG T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 74 :ERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAKLYLSL 1t9mA 160 :RLAETDGPLPR T0506 140 :PDTRLYRLRTEGVQINGGPARNASN 1t9mA 172 :PGYCLFELCLESVEFWGNGTERLHE T0506 223 :DLAS 1t9mA 197 :RLRY T0506 228 :SDLARL 1t9mA 207 :WKHRYL Number of specific fragments extracted= 12 number of extra gaps= 1 total=3270 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_415291464.pdb -s /var/tmp/to_scwrl_415291464.seq -o /var/tmp/from_scwrl_415291464.pdb > /var/tmp/scwrl_415291464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_415291464.pdb Number of alignments=387 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)A5 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)R238 because last residue in template chain is (1t9mA)P214 T0506 6 :PPVIT 1t9mA 12 :TGTIE T0506 11 :PRGTKIEP 1t9mA 22 :FEAPPANP T0506 24 :FEAVRVARDV 1t9mA 34 :RNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IE 1t9mA 72 :LG T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 74 :ERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVP 1t9mA 108 :QQIILNGRAERLPDERAD T0506 124 :ARYIA 1t9mA 126 :AQWLS T0506 129 :RYPKAKLYLSL 1t9mA 160 :RLAETDGPLPR T0506 140 :PDTRLYRLRTEGVQING 1t9mA 172 :PGYCLFELCLESVEFWG T0506 157 :GPARN 1t9mA 190 :GTERL T0506 221 :GIDLAS 1t9mA 195 :HERLRY T0506 228 :SDLARL 1t9mA 207 :WKHRYL T0506 237 :E 1t9mA 213 :Q Number of specific fragments extracted= 15 number of extra gaps= 1 total=3285 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_922514375.pdb -s /var/tmp/to_scwrl_922514375.seq -o /var/tmp/from_scwrl_922514375.pdb > /var/tmp/scwrl_922514375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_922514375.pdb Number of alignments=388 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IE 1t9mA 72 :LG T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 74 :ERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPAR 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTE T0506 208 :KTGRWKITS 1t9mA 193 :RLHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 13 number of extra gaps= 2 total=3298 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_131310141.pdb -s /var/tmp/to_scwrl_131310141.seq -o /var/tmp/from_scwrl_131310141.pdb > /var/tmp/scwrl_131310141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_131310141.pdb Number of alignments=389 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 131 :PKA 1t9mA 164 :TDG T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPAR 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTE T0506 208 :KTGRWKITS 1t9mA 193 :RLHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 13 number of extra gaps= 2 total=3311 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1120251404.pdb -s /var/tmp/to_scwrl_1120251404.seq -o /var/tmp/from_scwrl_1120251404.pdb > /var/tmp/scwrl_1120251404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120251404.pdb Number of alignments=390 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 4 :VAPPVITPRGTK 1t9mA 14 :TIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNASNITPAD 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLHERLRYD Number of specific fragments extracted= 10 number of extra gaps= 0 total=3321 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1527525577.pdb -s /var/tmp/to_scwrl_1527525577.seq -o /var/tmp/from_scwrl_1527525577.pdb > /var/tmp/scwrl_1527525577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527525577.pdb Number of alignments=391 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 1 :MLDVAPPVITPRGTK 1t9mA 11 :LTGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAKLYLSL 1t9mA 160 :RLAETDGPLPR T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPAD 1t9mA 172 :PGYCLFELCLESVEFWGNGTERLHERLRYD Number of specific fragments extracted= 10 number of extra gaps= 0 total=3331 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1822287376.pdb -s /var/tmp/to_scwrl_1822287376.seq -o /var/tmp/from_scwrl_1822287376.pdb > /var/tmp/scwrl_1822287376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1822287376.pdb Number of alignments=392 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 5 :APPVITPRGTK 1t9mA 15 :IEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNASNITPAD 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLHERLRYD Number of specific fragments extracted= 10 number of extra gaps= 0 total=3341 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_46505814.pdb -s /var/tmp/to_scwrl_46505814.seq -o /var/tmp/from_scwrl_46505814.pdb > /var/tmp/scwrl_46505814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46505814.pdb Number of alignments=393 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 7 :PVITPRGTK 1t9mA 17 :APFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNASN 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLHE Number of specific fragments extracted= 10 number of extra gaps= 0 total=3351 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_973638440.pdb -s /var/tmp/to_scwrl_973638440.seq -o /var/tmp/from_scwrl_973638440.pdb > /var/tmp/scwrl_973638440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973638440.pdb Number of alignments=394 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 13 :GTKIEP 1t9mA 24 :APPANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQING 1t9mA 167 :PLPRPPGYCLFELCLESVEFWG T0506 157 :GPAR 1t9mA 190 :GTER Number of specific fragments extracted= 10 number of extra gaps= 0 total=3361 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1750899047.pdb -s /var/tmp/to_scwrl_1750899047.seq -o /var/tmp/from_scwrl_1750899047.pdb > /var/tmp/scwrl_1750899047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750899047.pdb Number of alignments=395 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNAS 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLH T0506 211 :RWKITS 1t9mA 196 :ERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 13 number of extra gaps= 2 total=3374 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2061714280.pdb -s /var/tmp/to_scwrl_2061714280.seq -o /var/tmp/from_scwrl_2061714280.pdb > /var/tmp/scwrl_2061714280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061714280.pdb Number of alignments=396 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 3 :DVAPPVITPRGTK 1t9mA 13 :GTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNAS 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLH T0506 211 :RWKITS 1t9mA 196 :ERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLA 1t9mA 207 :WKHR Number of specific fragments extracted= 13 number of extra gaps= 2 total=3387 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_887737229.pdb -s /var/tmp/to_scwrl_887737229.seq -o /var/tmp/from_scwrl_887737229.pdb > /var/tmp/scwrl_887737229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_887737229.pdb Number of alignments=397 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 8 :VITP 1t9mA 18 :PFPE T0506 12 :RGTKIEP 1t9mA 23 :EAPPANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 131 :PKA 1t9mA 164 :TDG T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNAS 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLH Number of specific fragments extracted= 10 number of extra gaps= 0 total=3397 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1268223444.pdb -s /var/tmp/to_scwrl_1268223444.seq -o /var/tmp/from_scwrl_1268223444.pdb > /var/tmp/scwrl_1268223444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268223444.pdb Number of alignments=398 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 1 :MLDVAPPVITPRGTK 1t9mA 11 :LTGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IE 1t9mA 72 :LG T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 74 :ERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAKLYLSL 1t9mA 160 :RLAETDGPLPR T0506 140 :PDTRLYRLRTEGVQINGGPARNASN 1t9mA 172 :PGYCLFELCLESVEFWGNGTERLHE T0506 223 :DLAS 1t9mA 197 :RLRY Number of specific fragments extracted= 11 number of extra gaps= 0 total=3408 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1278096809.pdb -s /var/tmp/to_scwrl_1278096809.seq -o /var/tmp/from_scwrl_1278096809.pdb > /var/tmp/scwrl_1278096809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1278096809.pdb Number of alignments=399 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)F235 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)A236 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 T0506 3 :DVAPPVIT 1t9mA 13 :GTIEAPFP T0506 11 :PRGTKIEP 1t9mA 22 :FEAPPANP T0506 24 :FEAVRVARDV 1t9mA 34 :RNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IE 1t9mA 72 :LG T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 74 :ERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVP 1t9mA 108 :QQIILNGRAERLPDERAD T0506 124 :ARYIA 1t9mA 126 :AQWLS T0506 129 :RYPKAKLYLSL 1t9mA 160 :RLAETDGPLPR T0506 140 :PDTRLYRLRTEGVQING 1t9mA 172 :PGYCLFELCLESVEFWG T0506 157 :GPAR 1t9mA 190 :GTER T0506 227 :ASDLARLW 1t9mA 194 :LHERLRYD Number of specific fragments extracted= 13 number of extra gaps= 1 total=3421 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1325900778.pdb -s /var/tmp/to_scwrl_1325900778.seq -o /var/tmp/from_scwrl_1325900778.pdb > /var/tmp/scwrl_1325900778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1325900778.pdb Number of alignments=400 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IE 1t9mA 72 :LG T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 74 :ERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 129 :RYPKAK 1t9mA 160 :RLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNAS 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTERLH T0506 211 :RWKITS 1t9mA 196 :ERLRYD T0506 219 :P 1t9mA 204 :E Number of specific fragments extracted= 12 number of extra gaps= 2 total=3433 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1916399835.pdb -s /var/tmp/to_scwrl_1916399835.seq -o /var/tmp/from_scwrl_1916399835.pdb > /var/tmp/scwrl_1916399835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916399835.pdb Number of alignments=401 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 2 :LDVAPPVITPRGTK 1t9mA 12 :TGTIEAPFPEFEAP T0506 16 :IEP 1t9mA 27 :ANP T0506 20 :AGAPFEAVRVARDV 1t9mA 30 :MEVLRNWLERARRY T0506 34 :LHTSRTAALATLD 1t9mA 45 :VREPRALALATVD T0506 48 :VSGYPYTTATNIG 1t9mA 58 :GQGRPSTRIVVIA T0506 61 :IEPDG 1t9mA 72 :LGERG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 77 :VVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1t9mA 108 :QQIILNGRAERLPDERADAQWLSRPY T0506 131 :PKA 1t9mA 164 :TDG T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPAR 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNGTE T0506 208 :KTGRWKITS 1t9mA 193 :RLHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLAS 1t9mA 207 :WKHRY Number of specific fragments extracted= 13 number of extra gaps= 2 total=3446 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_779923399.pdb -s /var/tmp/to_scwrl_779923399.seq -o /var/tmp/from_scwrl_779923399.pdb > /var/tmp/scwrl_779923399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779923399.pdb Number of alignments=402 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P11 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)T166 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)P167 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)V239 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)E240 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)L242 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)K243 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)Q251 because last residue in template chain is (1t9mA)P214 T0506 12 :RGTKIEP 1t9mA 12 :TGTIEAP T0506 19 :SAGAPFEAVRVARDVLHTSR 1t9mA 22 :FEAPPANPMEVLRNWLERAR T0506 39 :TAALATLDP 1t9mA 50 :ALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDE 1t9mA 108 :QQIILNGRAERLPDER T0506 119 :VPLAIARYIARYPKA 1t9mA 125 :DAQWLSRPYQTHPMS T0506 161 :NASNI 1t9mA 140 :IASRQ T0506 168 :ADLRTDLSGAE 1t9mA 147 :TLADIHALRAE T0506 184 :AESEAT 1t9mA 158 :ARRLAE T0506 202 :AVLAGAKTGRWKITSIDPDGIDLAS 1t9mA 164 :TDGPLPRPPGYCLFELCLESVEFWG T0506 227 :ASDLARLWFAER 1t9mA 190 :GTERLHERLRYD T0506 241 :T 1t9mA 204 :E T0506 244 :QFEKALA 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 13 number of extra gaps= 3 total=3459 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2005590887.pdb -s /var/tmp/to_scwrl_2005590887.seq -o /var/tmp/from_scwrl_2005590887.pdb > /var/tmp/scwrl_2005590887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2005590887.pdb Number of alignments=403 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)K195 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)G196 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)A198 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)S199 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)A207 because last residue in template chain is (1t9mA)P214 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPD 1t9mA 108 :QQIILNGRAERLPDE T0506 118 :EVPLAIARYIARYPKAKLYL 1t9mA 125 :DAQWLSRPYQTHPMSIASRQ T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAI 1t9mA 147 :TLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYD T0506 197 :E 1t9mA 204 :E T0506 200 :RLAVLAG 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=3467 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_690103033.pdb -s /var/tmp/to_scwrl_690103033.seq -o /var/tmp/from_scwrl_690103033.pdb > /var/tmp/scwrl_690103033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690103033.pdb Number of alignments=404 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)F235 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)A236 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)R238 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)Q251 because last residue in template chain is (1t9mA)P214 T0506 8 :VITPRGTKIEPSA 1t9mA 12 :TGTIEAPFPEFEA T0506 22 :APFEAVRVARDVLHTSRT 1t9mA 25 :PPANPMEVLRNWLERARR T0506 40 :A 1t9mA 44 :G T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDE 1t9mA 108 :QQIILNGRAERLPDER T0506 119 :VPLAIARYIARYPK 1t9mA 125 :DAQWLSRPYQTHPM T0506 133 :AKLYL 1t9mA 140 :IASRQ T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITP 1t9mA 147 :TLADIHALRAEARRLAETDGPLPRPPGY T0506 209 :TGRWKITSIDPDGIDLASASDLARLW 1t9mA 176 :LFELCLESVEFWGNGTERLHERLRYD T0506 237 :E 1t9mA 204 :E T0506 240 :ETLKQF 1t9mA 207 :WKHRYL T0506 250 :A 1t9mA 213 :Q Number of specific fragments extracted= 13 number of extra gaps= 3 total=3480 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_631504097.pdb -s /var/tmp/to_scwrl_631504097.seq -o /var/tmp/from_scwrl_631504097.pdb > /var/tmp/scwrl_631504097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_631504097.pdb Number of alignments=405 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P11 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)D229 because last residue in template chain is (1t9mA)P214 T0506 12 :RGTKIEP 1t9mA 12 :TGTIEAP T0506 19 :SAGAPFEAVRVARDVLHTSRT 1t9mA 22 :FEAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIG 1t9mA 59 :QGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPL 1t9mA 108 :QQIILNGRAERLPDERADA T0506 122 :AIARYIARYPKAK 1t9mA 153 :ALRAEARRLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGG 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGN T0506 159 :AR 1t9mA 190 :GT T0506 207 :AKTGRWKITS 1t9mA 192 :ERLHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLASAS 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 13 number of extra gaps= 2 total=3493 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1541417095.pdb -s /var/tmp/to_scwrl_1541417095.seq -o /var/tmp/from_scwrl_1541417095.pdb > /var/tmp/scwrl_1541417095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541417095.pdb Number of alignments=406 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P11 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)D229 because last residue in template chain is (1t9mA)P214 T0506 12 :RGTKIEP 1t9mA 12 :TGTIEAP T0506 19 :SAGAPFEAVRVARDVLHTSRT 1t9mA 22 :FEAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEP 1t9mA 59 :QGRPSTRIVVIAELG T0506 64 :DGT 1t9mA 75 :RGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDE 1t9mA 108 :QQIILNGRAERLPDER T0506 119 :VPLAIARYIARYP 1t9mA 125 :DAQWLSRPYQTHP T0506 132 :KAKLYLS 1t9mA 157 :EARRLAE T0506 139 :LPDTRLYRLRTEGVQINGG 1t9mA 171 :PPGYCLFELCLESVEFWGN T0506 159 :AR 1t9mA 190 :GT T0506 208 :K 1t9mA 192 :E T0506 209 :TGRWKITS 1t9mA 194 :LHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLASAS 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 15 number of extra gaps= 2 total=3508 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_533026080.pdb -s /var/tmp/to_scwrl_533026080.seq -o /var/tmp/from_scwrl_533026080.pdb > /var/tmp/scwrl_533026080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_533026080.pdb Number of alignments=407 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)S175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)F235 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)A236 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)R238 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)L242 because last residue in template chain is (1t9mA)P214 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGP 1t9mA 108 :QQIILNGRAERLPD T0506 120 :PLAIARYIARYPKAK 1t9mA 122 :ERADAQWLSRPYQTH T0506 166 :TPADLRTD 1t9mA 137 :PMSIASRQ T0506 176 :GAEELMAAAE 1t9mA 147 :TLADIHALRA T0506 202 :AVLAGAK 1t9mA 157 :EARRLAE T0506 211 :RWKITSIDPDGIDLASASDLARLW 1t9mA 178 :ELCLESVEFWGNGTERLHERLRYD T0506 237 :E 1t9mA 204 :E T0506 239 :VET 1t9mA 211 :YLQ Number of specific fragments extracted= 11 number of extra gaps= 3 total=3519 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_186419743.pdb -s /var/tmp/to_scwrl_186419743.seq -o /var/tmp/from_scwrl_186419743.pdb > /var/tmp/scwrl_186419743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_186419743.pdb Number of alignments=408 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)S175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)F235 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)A236 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)R238 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDE 1t9mA 108 :QQIILNGRAERLPDER T0506 119 :VPLAIARYIARYPKA 1t9mA 125 :DAQWLSRPYQTHPMS T0506 169 :DLRTD 1t9mA 140 :IASRQ T0506 176 :GAEELMAAAESEATRLNAIK 1t9mA 147 :TLADIHALRAEARRLAETDG T0506 211 :RWKITSIDPDGIDLASASDLARLW 1t9mA 178 :ELCLESVEFWGNGTERLHERLRYD T0506 237 :E 1t9mA 204 :E T0506 240 :ETLKQ 1t9mA 207 :WKHRY T0506 252 :LLK 1t9mA 212 :LQP Number of specific fragments extracted= 11 number of extra gaps= 3 total=3530 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_337234339.pdb -s /var/tmp/to_scwrl_337234339.seq -o /var/tmp/from_scwrl_337234339.pdb > /var/tmp/scwrl_337234339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_337234339.pdb Number of alignments=409 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P11 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)R171 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)T172 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)T241 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)L242 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)Q244 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)F245 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)Q251 because last residue in template chain is (1t9mA)P214 T0506 12 :RGTKIEP 1t9mA 12 :TGTIEAP T0506 19 :SAGAPFEAVRVARDVLHTSRT 1t9mA 22 :FEAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPD 1t9mA 108 :QQIILNGRAERLPDE T0506 121 :LAIARYIAR 1t9mA 123 :RADAQWLSR T0506 130 :YPK 1t9mA 136 :HPM T0506 165 :ITPADL 1t9mA 139 :SIASRQ T0506 173 :DLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAK 1t9mA 147 :TLADIHALRAEARRLAETDGPLPRPPGYCLFELCLE T0506 216 :SIDPDG 1t9mA 183 :SVEFWG T0506 228 :SDLARLWFAERVE 1t9mA 189 :NGTERLHERLRYD T0506 243 :K 1t9mA 204 :E T0506 246 :EK 1t9mA 207 :WK T0506 248 :ALA 1t9mA 211 :YLQ Number of specific fragments extracted= 14 number of extra gaps= 3 total=3544 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1084496461.pdb -s /var/tmp/to_scwrl_1084496461.seq -o /var/tmp/from_scwrl_1084496461.pdb > /var/tmp/scwrl_1084496461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084496461.pdb Number of alignments=410 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P11 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)S228 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)D229 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)E237 because last residue in template chain is (1t9mA)P214 T0506 12 :RGTKIEPS 1t9mA 12 :TGTIEAPF T0506 20 :AGAPFEAVRVARDVLHTSRT 1t9mA 23 :EAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRES T0506 102 :LPRLTLVGRADRIGP 1t9mA 107 :SQQIILNGRAERLPD T0506 120 :PLAIARYIARYPK 1t9mA 122 :ERADAQWLSRPYQ T0506 135 :LYLSLPDTRLYRLRTEGVQINGG 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGN T0506 223 :DLAS 1t9mA 197 :RLRY T0506 227 :A 1t9mA 204 :E T0506 230 :LARLWFA 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 10 number of extra gaps= 2 total=3554 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_584878113.pdb -s /var/tmp/to_scwrl_584878113.seq -o /var/tmp/from_scwrl_584878113.pdb > /var/tmp/scwrl_584878113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_584878113.pdb Number of alignments=411 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P11 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)S228 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)D229 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)E237 because last residue in template chain is (1t9mA)P214 T0506 12 :RGTKIEP 1t9mA 12 :TGTIEAP T0506 19 :SAGAPFEAVRVARDVLHTSRT 1t9mA 22 :FEAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPF 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWR T0506 100 :LTLPRLTLVGRADRIGP 1t9mA 105 :ESSQQIILNGRAERLPD T0506 120 :PLAIARYIAR 1t9mA 122 :ERADAQWLSR T0506 132 :KAKLYLS 1t9mA 157 :EARRLAE T0506 139 :LPDTRLYRLRTEGVQINGGP 1t9mA 171 :PPGYCLFELCLESVEFWGNG T0506 219 :PDGIDLAS 1t9mA 193 :RLHERLRY T0506 227 :A 1t9mA 204 :E T0506 230 :LARLWFA 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=3565 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1705057256.pdb -s /var/tmp/to_scwrl_1705057256.seq -o /var/tmp/from_scwrl_1705057256.pdb > /var/tmp/scwrl_1705057256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1705057256.pdb Number of alignments=412 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)D229 because last residue in template chain is (1t9mA)P214 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDEVPL 1t9mA 108 :QQIILNGRAERLPDERADA T0506 122 :AIARYIARYPKAK 1t9mA 153 :ALRAEARRLAETD T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 1t9mA 167 :PLPRPPGYCLFELCLESVEFWGNG T0506 206 :GAKTGRWKITS 1t9mA 191 :TERLHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLASAS 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 9 number of extra gaps= 2 total=3574 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_180102897.pdb -s /var/tmp/to_scwrl_180102897.seq -o /var/tmp/from_scwrl_180102897.pdb > /var/tmp/scwrl_180102897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_180102897.pdb Number of alignments=413 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)E146 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE in next template residue (1t9mA)D203 Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE at template residue (1t9mA)D203 Warning: unaligning (T0506)D220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t9mA)G206 Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)G206 Warning: unaligning (T0506)D229 because last residue in template chain is (1t9mA)P214 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGP 1t9mA 108 :QQIILNGRAERLPD T0506 120 :PLAIARYIARYPK 1t9mA 122 :ERADAQWLSRPYQ T0506 135 :LYLS 1t9mA 147 :TLAD T0506 139 :LPDTRLYRLRTEGVQINGGP 1t9mA 171 :PPGYCLFELCLESVEFWGNG T0506 206 :GAKTGRWKITS 1t9mA 191 :TERLHERLRYD T0506 219 :P 1t9mA 204 :E T0506 222 :IDLASAS 1t9mA 207 :WKHRYLQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=3584 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1096630392.pdb -s /var/tmp/to_scwrl_1096630392.seq -o /var/tmp/from_scwrl_1096630392.pdb > /var/tmp/scwrl_1096630392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1096630392.pdb Number of alignments=414 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 18 :PSAGAPFEAVRVARDVLHTSR 1t9mA 21 :EFEAPPANPMEVLRNWLERAR T0506 39 :TAALATLDP 1t9mA 50 :ALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDE 1t9mA 108 :QQIILNGRAERLPDER T0506 122 :AIARYIAR 1t9mA 124 :ADAQWLSR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3589 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_343898007.pdb -s /var/tmp/to_scwrl_343898007.seq -o /var/tmp/from_scwrl_343898007.pdb > /var/tmp/scwrl_343898007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_343898007.pdb Number of alignments=415 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDP 1t9mA 19 :FPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGP 1t9mA 108 :QQIILNGRAERLPD T0506 120 :PLAIARYIAR 1t9mA 122 :ERADAQWLSR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3593 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_136512139.pdb -s /var/tmp/to_scwrl_136512139.seq -o /var/tmp/from_scwrl_136512139.pdb > /var/tmp/scwrl_136512139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136512139.pdb Number of alignments=416 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLDP 1t9mA 29 :PMEVLRNWLERARRYGVREPRALALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDE 1t9mA 108 :QQIILNGRAERLPDER T0506 119 :VPLAIAR 1t9mA 125 :DAQWLSR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3597 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_361844897.pdb -s /var/tmp/to_scwrl_361844897.seq -o /var/tmp/from_scwrl_361844897.pdb > /var/tmp/scwrl_361844897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_361844897.pdb Number of alignments=417 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 19 :SAGAPFEAVRVARDVLHTSRT 1t9mA 22 :FEAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIG 1t9mA 59 :QGRPSTRIVVIA T0506 61 :IEPDGT 1t9mA 72 :LGERGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPD 1t9mA 108 :QQIILNGRAERLPDE T0506 121 :LAIARYIA 1t9mA 123 :RADAQWLS Number of specific fragments extracted= 7 number of extra gaps= 0 total=3604 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_759189471.pdb -s /var/tmp/to_scwrl_759189471.seq -o /var/tmp/from_scwrl_759189471.pdb > /var/tmp/scwrl_759189471.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759189471.pdb Number of alignments=418 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 22 :APFEAVRVARDVLHTSRT 1t9mA 25 :PPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEP 1t9mA 59 :QGRPSTRIVVIAELG T0506 64 :DGT 1t9mA 75 :RGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 78 :VFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPD 1t9mA 108 :QQIILNGRAERLPDE T0506 121 :LAIARYI 1t9mA 123 :RADAQWL Number of specific fragments extracted= 7 number of extra gaps= 0 total=3611 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1059026515.pdb -s /var/tmp/to_scwrl_1059026515.seq -o /var/tmp/from_scwrl_1059026515.pdb > /var/tmp/scwrl_1059026515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1059026515.pdb Number of alignments=419 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGP 1t9mA 108 :QQIILNGRAERLPD T0506 120 :PLAIARYIARY 1t9mA 122 :ERADAQWLSRP Number of specific fragments extracted= 5 number of extra gaps= 0 total=3616 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_493155039.pdb -s /var/tmp/to_scwrl_493155039.seq -o /var/tmp/from_scwrl_493155039.pdb > /var/tmp/scwrl_493155039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_493155039.pdb Number of alignments=420 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPD 1t9mA 108 :QQIILNGRAERLPDE T0506 121 :LAIARYIAR 1t9mA 123 :RADAQWLSR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3621 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1879440875.pdb -s /var/tmp/to_scwrl_1879440875.seq -o /var/tmp/from_scwrl_1879440875.pdb > /var/tmp/scwrl_1879440875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1879440875.pdb Number of alignments=421 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set T0506 18 :PSAGAPFEAVRVARDVLHTSRT 1t9mA 21 :EFEAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGPDE 1t9mA 108 :QQIILNGRAERLPDER T0506 122 :AIARYIAR 1t9mA 124 :ADAQWLSR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3626 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_439068445.pdb -s /var/tmp/to_scwrl_439068445.seq -o /var/tmp/from_scwrl_439068445.pdb > /var/tmp/scwrl_439068445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439068445.pdb Number of alignments=422 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t9mA)E146 T0506 8 :VITPRGTKIEPSA 1t9mA 12 :TGTIEAPFPEFEA T0506 22 :APFEAVRVARDVLHTSRT 1t9mA 25 :PPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRES T0506 102 :LPRLTLVGRADRIGP 1t9mA 107 :SQQIILNGRAERLPD T0506 120 :PLAIARYIARYPK 1t9mA 122 :ERADAQWLSRPYQ T0506 135 :LYLSLPDTRLYRLRTEGVQING 1t9mA 167 :PLPRPPGYCLFELCLESVEFWG Number of specific fragments extracted= 7 number of extra gaps= 1 total=3633 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_167958768.pdb -s /var/tmp/to_scwrl_167958768.seq -o /var/tmp/from_scwrl_167958768.pdb > /var/tmp/scwrl_167958768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_167958768.pdb Number of alignments=423 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (1t9mA)L11 T0506 9 :ITPRGTKIEPSAGAPFEAVRVARDVLHTSRT 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARR T0506 40 :AALATLDP 1t9mA 51 :LALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPF 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWR T0506 100 :LTLPRLTLVGRADRIGP 1t9mA 105 :ESSQQIILNGRAERLPD T0506 120 :PLAIARYIAR 1t9mA 122 :ERADAQWLSR T0506 132 :KAKLYLS 1t9mA 157 :EARRLAE T0506 139 :LPDTRLYRLRTEGVQINGGP 1t9mA 171 :PPGYCLFELCLESVEFWGNG T0506 226 :SASDLARLWF 1t9mA 191 :TERLHERLRY Number of specific fragments extracted= 8 number of extra gaps= 0 total=3641 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1925946689.pdb -s /var/tmp/to_scwrl_1925946689.seq -o /var/tmp/from_scwrl_1925946689.pdb > /var/tmp/scwrl_1925946689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1925946689.pdb Number of alignments=424 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGP 1t9mA 108 :QQIILNGRAERLPD T0506 120 :PLAIARYIAR 1t9mA 122 :ERADAQWLSR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3646 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1412706884.pdb -s /var/tmp/to_scwrl_1412706884.seq -o /var/tmp/from_scwrl_1412706884.pdb > /var/tmp/scwrl_1412706884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412706884.pdb Number of alignments=425 # 1t9mA read from all-align.a2m # found chain 1t9mA in template set Warning: unaligning (T0506)P7 because first residue in template chain is (1t9mA)L11 T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1t9mA 12 :TGTIEAPFPEFEAPPANPMEVLRNWLERARRYG T0506 41 :ALATLDP 1t9mA 52 :ALATVDG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1t9mA 59 :QGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESS T0506 103 :PRLTLVGRADRIGP 1t9mA 108 :QQIILNGRAERLPD T0506 120 :PLAIARYIARY 1t9mA 122 :ERADAQWLSRP Number of specific fragments extracted= 5 number of extra gaps= 0 total=3651 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1918857816.pdb -s /var/tmp/to_scwrl_1918857816.seq -o /var/tmp/from_scwrl_1918857816.pdb > /var/tmp/scwrl_1918857816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1918857816.pdb Number of alignments=426 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 10 :TPRGTKIEPSAGAPFEAVRVA 1ty9A 24 :DAPFPEYQTLPADPMSVLHNW T0506 31 :RDVLHTSRTAALATLDP 1ty9A 50 :RVGIREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQ T0506 104 :RLTLVGRADRIGPDEV 1ty9A 117 :QIILNGQAVRLPNAKA T0506 121 :LAIARYIARYPKAKLYLSLPDTRL 1ty9A 133 :DDAWLKRPYATHPMSSVSRQSEEL T0506 240 :ETLKQFEKALAQLLK 1ty9A 157 :QDVQAMRNAARQLAE Number of specific fragments extracted= 7 number of extra gaps= 1 total=3658 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1840177322.pdb -s /var/tmp/to_scwrl_1840177322.seq -o /var/tmp/from_scwrl_1840177322.pdb > /var/tmp/scwrl_1840177322.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1840177322.pdb Number of alignments=427 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 10 :TPRGTKIEPSAGAPFEAV 1ty9A 24 :DAPFPEYQTLPADPMSVL T0506 28 :RVARDVLHTSRTAALATLDP 1ty9A 47 :RARRVGIREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGT 1ty9A 81 :SDAG T0506 68 :FFFAAGL 1ty9A 85 :VVFSTHA T0506 75 :TLHARNMETDARISVTLAPFGKGD 1ty9A 93 :SQKGRELLHNPWASGVLYWRETSQ T0506 104 :RLTLVGRADRIGPDEV 1ty9A 117 :QIILNGQAVRLPNAKA T0506 121 :LAIARYIARYPKAKLYLSLPDTRL 1ty9A 133 :DDAWLKRPYATHPMSSVSRQSEEL T0506 240 :ETLKQFEKALAQLLK 1ty9A 157 :QDVQAMRNAARQLAE Number of specific fragments extracted= 9 number of extra gaps= 1 total=3667 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_152960467.pdb -s /var/tmp/to_scwrl_152960467.seq -o /var/tmp/from_scwrl_152960467.pdb > /var/tmp/scwrl_152960467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152960467.pdb Number of alignments=428 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 31 :RDVLHTSRTAALATLDP 1ty9A 50 :RVGIREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQ T0506 104 :RLTLVGRADRIGPDEVP 1ty9A 117 :QIILNGQAVRLPNAKAD Number of specific fragments extracted= 4 number of extra gaps= 1 total=3671 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1039597614.pdb -s /var/tmp/to_scwrl_1039597614.seq -o /var/tmp/from_scwrl_1039597614.pdb > /var/tmp/scwrl_1039597614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039597614.pdb Number of alignments=429 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 30 :ARDVLHTSRTAALATLDP 1ty9A 49 :RRVGIREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGT 1ty9A 81 :SDAG T0506 68 :FFFAAGL 1ty9A 85 :VVFSTHA T0506 75 :TLHARNMETDARISVTLAPFGKGD 1ty9A 93 :SQKGRELLHNPWASGVLYWRETSQ T0506 104 :RLTLVGRADRIGPDEVP 1ty9A 117 :QIILNGQAVRLPNAKAD T0506 122 :AIARYIARYPKAK 1ty9A 134 :DAWLKRPYATHPM Number of specific fragments extracted= 7 number of extra gaps= 1 total=3678 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_970790486.pdb -s /var/tmp/to_scwrl_970790486.seq -o /var/tmp/from_scwrl_970790486.pdb > /var/tmp/scwrl_970790486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_970790486.pdb Number of alignments=430 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)D3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)L201 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)D218 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)P219 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 4 :VAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVGIREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQ T0506 104 :RLTLVGRADRIGPDEVP 1ty9A 117 :QIILNGQAVRLPNAKAD T0506 143 :RLYRLRTEGVQINGGPARNASNI 1ty9A 134 :DAWLKRPYATHPMSSVSRQSEEL T0506 185 :ESEATRLNAIKGEASR 1ty9A 157 :QDVQAMRNAARQLAEL T0506 205 :AGAKTGRWKITSI 1ty9A 175 :PLPRPEGYCVFEL T0506 220 :DGIDLASASDL 1ty9A 190 :ESLEFWGNGQE T0506 231 :ARLWFAER 1ty9A 204 :ERLRYDRS T0506 244 :QFEKALAQLLK 1ty9A 212 :DTGWNVRRLQP Number of specific fragments extracted= 10 number of extra gaps= 3 total=3688 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1478861245.pdb -s /var/tmp/to_scwrl_1478861245.seq -o /var/tmp/from_scwrl_1478861245.pdb > /var/tmp/scwrl_1478861245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478861245.pdb Number of alignments=431 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)G60 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)L191 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)D218 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)P219 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 9 :ITPRGTKIEPSAGAPFEAVR 1ty9A 23 :LDAPFPEYQTLPADPMSVLH T0506 29 :VARDVLHTSRTAALATLD 1ty9A 48 :ARRVGIREPRALALATAD T0506 48 :VSGYPYTTA 1ty9A 66 :SQGRPSTRI T0506 57 :TNI 1ty9A 76 :VIS T0506 62 :EPDGTPFFFAAG 1ty9A 81 :SDAGVVFSTHAG T0506 75 :TLHARNMETDARISVTLAPFGKGD 1ty9A 93 :SQKGRELLHNPWASGVLYWRETSQ T0506 104 :RLTLVGRADRIGPDEVP 1ty9A 117 :QIILNGQAVRLPNAKAD T0506 143 :RLYRLRTEGVQINGGPARNASNI 1ty9A 134 :DAWLKRPYATHPMSSVSRQSEEL T0506 179 :ELMAAAESEATR 1ty9A 161 :AMRNAARQLAEL T0506 205 :AGAKTGRWKITSI 1ty9A 175 :PLPRPEGYCVFEL T0506 220 :DGIDLASASDL 1ty9A 190 :ESLEFWGNGQE T0506 231 :ARLWFAER 1ty9A 204 :ERLRYDRS T0506 244 :QFEKALAQLLK 1ty9A 212 :DTGWNVRRLQP Number of specific fragments extracted= 13 number of extra gaps= 3 total=3701 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_808513802.pdb -s /var/tmp/to_scwrl_808513802.seq -o /var/tmp/from_scwrl_808513802.pdb > /var/tmp/scwrl_808513802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_808513802.pdb Number of alignments=432 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)P219 because last residue in template chain is (1ty9A)P222 T0506 210 :GRWKITSID 1ty9A 213 :TGWNVRRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=3702 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)G60 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 38 :RTAALATLD 1ty9A 57 :RALALATAD T0506 48 :VSGYPYTTA 1ty9A 66 :SQGRPSTRI T0506 57 :TNI 1ty9A 76 :VIS T0506 62 :EPDGTPFFFAAG 1ty9A 81 :SDAGVVFSTHAG T0506 75 :TLHARNMETDARISVTLAPFGKGD 1ty9A 93 :SQKGRELLHNPWASGVLYWRETSQ T0506 104 :RLTLVGRADRIGPDEVP 1ty9A 117 :QIILNGQAVRLPNAKAD Number of specific fragments extracted= 6 number of extra gaps= 1 total=3708 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1750713884.pdb -s /var/tmp/to_scwrl_1750713884.seq -o /var/tmp/from_scwrl_1750713884.pdb > /var/tmp/scwrl_1750713884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750713884.pdb Number of alignments=433 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 T0506 187 :EATRLNAIKGEASRLAVL 1ty9A 155 :ELQDVQAMRNAARQLAEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=3709 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3709 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)A182 because last residue in template chain is (1ty9A)P222 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PK 1ty9A 170 :AE T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNASNITPADLRTDLSGAEELM 1ty9A 190 :ESLEFWGNGQERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=3719 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1336968486.pdb -s /var/tmp/to_scwrl_1336968486.seq -o /var/tmp/from_scwrl_1336968486.pdb > /var/tmp/scwrl_1336968486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1336968486.pdb Number of alignments=434 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)A182 because last residue in template chain is (1ty9A)P222 T0506 19 :SAGAPFEAVRVARDV 1ty9A 37 :PMSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 129 :RYPK 1ty9A 169 :LAEL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNASNITPADLRTDLSGAEELM 1ty9A 190 :ESLEFWGNGQERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 8 number of extra gaps= 3 total=3727 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1498616834.pdb -s /var/tmp/to_scwrl_1498616834.seq -o /var/tmp/from_scwrl_1498616834.pdb > /var/tmp/scwrl_1498616834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1498616834.pdb Number of alignments=435 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)A182 because last residue in template chain is (1ty9A)P222 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNASNITPADLRTDLSGAEELM 1ty9A 190 :ESLEFWGNGQERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=3737 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_234734335.pdb -s /var/tmp/to_scwrl_234734335.seq -o /var/tmp/from_scwrl_234734335.pdb > /var/tmp/scwrl_234734335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_234734335.pdb Number of alignments=436 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :EPDGT 1ty9A 81 :SDAGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 86 :VFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PKA 1ty9A 170 :AEL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPA 1ty9A 198 :GQE T0506 161 :NASN 1ty9A 201 :RLHE T0506 212 :WKITSIDPDGIDLAS 1ty9A 205 :RLRYDRSDTGWNVRR Number of specific fragments extracted= 14 number of extra gaps= 3 total=3751 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_730901935.pdb -s /var/tmp/to_scwrl_730901935.seq -o /var/tmp/from_scwrl_730901935.pdb > /var/tmp/scwrl_730901935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_730901935.pdb Number of alignments=437 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 9 :IT 1ty9A 23 :LD T0506 11 :PRGTKIEP 1ty9A 30 :YQTLPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :EPDGT 1ty9A 81 :SDAGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 86 :VFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 132 :KA 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 209 :TGRWKITSIDPDGIDLAS 1ty9A 202 :LHERLRYDRSDTGWNVRR Number of specific fragments extracted= 13 number of extra gaps= 3 total=3764 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2031642915.pdb -s /var/tmp/to_scwrl_2031642915.seq -o /var/tmp/from_scwrl_2031642915.pdb > /var/tmp/scwrl_2031642915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2031642915.pdb Number of alignments=438 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 9 :IT 1ty9A 23 :LD T0506 11 :PRG 1ty9A 29 :EYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PK 1ty9A 170 :AE T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNAS 1ty9A 190 :ESLEFWGNGQERLH T0506 211 :RWKITSIDPDGIDLAS 1ty9A 204 :ERLRYDRSDTGWNVRR Number of specific fragments extracted= 13 number of extra gaps= 3 total=3777 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_421154078.pdb -s /var/tmp/to_scwrl_421154078.seq -o /var/tmp/from_scwrl_421154078.pdb > /var/tmp/scwrl_421154078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_421154078.pdb Number of alignments=439 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :P 1ty9A 172 :L T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARN 1ty9A 190 :ESLEFWGNGQER T0506 209 :TGRWKITSIDPDGIDLAS 1ty9A 202 :LHERLRYDRSDTGWNVRR Number of specific fragments extracted= 12 number of extra gaps= 3 total=3789 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1068136274.pdb -s /var/tmp/to_scwrl_1068136274.seq -o /var/tmp/from_scwrl_1068136274.pdb > /var/tmp/scwrl_1068136274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1068136274.pdb Number of alignments=440 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)A182 because last residue in template chain is (1ty9A)P222 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 162 :ASNITPADLRTDLSGAEELM 1ty9A 202 :LHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=3801 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_968655730.pdb -s /var/tmp/to_scwrl_968655730.seq -o /var/tmp/from_scwrl_968655730.pdb > /var/tmp/scwrl_968655730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_968655730.pdb Number of alignments=441 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PK 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 162 :ASN 1ty9A 202 :LHE T0506 223 :DLAS 1ty9A 205 :RLRY T0506 227 :ASDLARLW 1ty9A 214 :GWNVRRLQ Number of specific fragments extracted= 15 number of extra gaps= 3 total=3816 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1006032191.pdb -s /var/tmp/to_scwrl_1006032191.seq -o /var/tmp/from_scwrl_1006032191.pdb > /var/tmp/scwrl_1006032191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006032191.pdb Number of alignments=442 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)F235 because last residue in template chain is (1ty9A)P222 T0506 20 :AGAPFE 1ty9A 33 :LPADPM T0506 26 :AVRVARDV 1ty9A 44 :WLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAI 1ty9A 116 :QQIILNGQAVRLPNAKADDAW T0506 127 :IA 1ty9A 137 :LK T0506 131 :PK 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPARNAS 1ty9A 198 :GQERLHE T0506 223 :DLAS 1ty9A 205 :RLRY T0506 227 :ASDLARLW 1ty9A 214 :GWNVRRLQ Number of specific fragments extracted= 14 number of extra gaps= 3 total=3830 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_625709883.pdb -s /var/tmp/to_scwrl_625709883.seq -o /var/tmp/from_scwrl_625709883.pdb > /var/tmp/scwrl_625709883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_625709883.pdb Number of alignments=443 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 9 :IT 1ty9A 23 :LD T0506 11 :PRG 1ty9A 29 :EYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 129 :RY 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPA 1ty9A 198 :GQE T0506 208 :KTGRWKITSIDPDGIDLAS 1ty9A 201 :RLHERLRYDRSDTGWNVRR Number of specific fragments extracted= 14 number of extra gaps= 3 total=3844 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1148758626.pdb -s /var/tmp/to_scwrl_1148758626.seq -o /var/tmp/from_scwrl_1148758626.pdb > /var/tmp/scwrl_1148758626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1148758626.pdb Number of alignments=444 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)P131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 19 :SAGAPFEAVRVARDV 1ty9A 37 :PMSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 130 :Y 1ty9A 172 :L T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPA 1ty9A 198 :GQE T0506 208 :KTGRWKITSIDPDGIDLAS 1ty9A 201 :RLHERLRYDRSDTGWNVRR Number of specific fragments extracted= 11 number of extra gaps= 3 total=3855 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2102662583.pdb -s /var/tmp/to_scwrl_2102662583.seq -o /var/tmp/from_scwrl_2102662583.pdb > /var/tmp/scwrl_2102662583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2102662583.pdb Number of alignments=445 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PK 1ty9A 170 :AE T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNASNITP 1ty9A 190 :ESLEFWGNGQERLHERLR Number of specific fragments extracted= 10 number of extra gaps= 3 total=3865 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_969607890.pdb -s /var/tmp/to_scwrl_969607890.seq -o /var/tmp/from_scwrl_969607890.pdb > /var/tmp/scwrl_969607890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969607890.pdb Number of alignments=446 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 129 :RYPK 1ty9A 169 :LAEL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNASNITPAD 1ty9A 190 :ESLEFWGNGQERLHERLRYD Number of specific fragments extracted= 9 number of extra gaps= 3 total=3874 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1285270766.pdb -s /var/tmp/to_scwrl_1285270766.seq -o /var/tmp/from_scwrl_1285270766.pdb > /var/tmp/scwrl_1285270766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1285270766.pdb Number of alignments=447 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 11 :PRGTKIEP 1ty9A 30 :YQTLPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNASNITPAD 1ty9A 190 :ESLEFWGNGQERLHERLRYD Number of specific fragments extracted= 9 number of extra gaps= 3 total=3883 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_317023834.pdb -s /var/tmp/to_scwrl_317023834.seq -o /var/tmp/from_scwrl_317023834.pdb > /var/tmp/scwrl_317023834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_317023834.pdb Number of alignments=448 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :EPDGT 1ty9A 81 :SDAGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 86 :VFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PKA 1ty9A 170 :AEL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :G 1ty9A 198 :G T0506 159 :ARNASN 1ty9A 199 :QERLHE Number of specific fragments extracted= 12 number of extra gaps= 3 total=3895 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1728797360.pdb -s /var/tmp/to_scwrl_1728797360.seq -o /var/tmp/from_scwrl_1728797360.pdb > /var/tmp/scwrl_1728797360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728797360.pdb Number of alignments=449 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 12 :RGTKIEP 1ty9A 31 :QTLPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :EPDGT 1ty9A 81 :SDAGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 86 :VFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 132 :KA 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 162 :AS 1ty9A 202 :LH Number of specific fragments extracted= 12 number of extra gaps= 3 total=3907 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_196813634.pdb -s /var/tmp/to_scwrl_196813634.seq -o /var/tmp/from_scwrl_196813634.pdb > /var/tmp/scwrl_196813634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_196813634.pdb Number of alignments=450 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PK 1ty9A 170 :AE T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNAS 1ty9A 190 :ESLEFWGNGQERLH T0506 211 :RWKITSIDPDGIDLA 1ty9A 204 :ERLRYDRSDTGWNVR Number of specific fragments extracted= 11 number of extra gaps= 3 total=3918 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_810178873.pdb -s /var/tmp/to_scwrl_810178873.seq -o /var/tmp/from_scwrl_810178873.pdb > /var/tmp/scwrl_810178873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_810178873.pdb Number of alignments=451 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :P 1ty9A 172 :L T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGPARNAS 1ty9A 190 :ESLEFWGNGQERLH T0506 211 :RWKITSIDPDGIDLA 1ty9A 204 :ERLRYDRSDTGWNVR Number of specific fragments extracted= 12 number of extra gaps= 3 total=3930 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1460754589.pdb -s /var/tmp/to_scwrl_1460754589.seq -o /var/tmp/from_scwrl_1460754589.pdb > /var/tmp/scwrl_1460754589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460754589.pdb Number of alignments=452 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 13 :GTKIEP 1ty9A 32 :TLPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 162 :AS 1ty9A 202 :LH Number of specific fragments extracted= 11 number of extra gaps= 3 total=3941 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_635882079.pdb -s /var/tmp/to_scwrl_635882079.seq -o /var/tmp/from_scwrl_635882079.pdb > /var/tmp/scwrl_635882079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_635882079.pdb Number of alignments=453 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 5 :APPVITPRG 1ty9A 23 :LDAPFPEYQ T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 131 :PK 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 162 :ASN 1ty9A 202 :LHE T0506 223 :DLAS 1ty9A 205 :RLRY T0506 227 :ASDLARL 1ty9A 214 :GWNVRRL Number of specific fragments extracted= 15 number of extra gaps= 3 total=3956 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_978137641.pdb -s /var/tmp/to_scwrl_978137641.seq -o /var/tmp/from_scwrl_978137641.pdb > /var/tmp/scwrl_978137641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_978137641.pdb Number of alignments=454 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 24 :F 1ty9A 38 :M T0506 26 :AVRVARDV 1ty9A 44 :WLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAI 1ty9A 116 :QQIILNGQAVRLPNAKADDAW T0506 127 :IA 1ty9A 137 :LK T0506 131 :PK 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPARNAS 1ty9A 198 :GQERLHE T0506 223 :DLAS 1ty9A 205 :RLRY Number of specific fragments extracted= 14 number of extra gaps= 3 total=3970 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1239217631.pdb -s /var/tmp/to_scwrl_1239217631.seq -o /var/tmp/from_scwrl_1239217631.pdb > /var/tmp/scwrl_1239217631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239217631.pdb Number of alignments=455 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 13 :GTKIEP 1ty9A 32 :TLPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 129 :RY 1ty9A 171 :EL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 162 :A 1ty9A 202 :L T0506 210 :GRWKITSIDPDGI 1ty9A 203 :HERLRYDRSDTGW T0506 229 :DLAR 1ty9A 216 :NVRR Number of specific fragments extracted= 14 number of extra gaps= 3 total=3984 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2048588964.pdb -s /var/tmp/to_scwrl_2048588964.seq -o /var/tmp/from_scwrl_2048588964.pdb > /var/tmp/scwrl_2048588964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2048588964.pdb Number of alignments=456 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)P131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 14 :TKIEP 1ty9A 33 :LPADP T0506 20 :AGAPFEAVRVARDV 1ty9A 38 :MSVLHNWLERARRV T0506 34 :LHTSRTAALATLD 1ty9A 53 :IREPRALALATAD T0506 48 :VSGYPYTTATNIG 1ty9A 66 :SQGRPSTRIVVIS T0506 62 :E 1ty9A 81 :S T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 82 :DAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 1ty9A 116 :QQIILNGQAVRLPNAKADDAWLKRPY T0506 130 :Y 1ty9A 172 :L T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQING 1ty9A 190 :ESLEFWG T0506 157 :GPAR 1ty9A 198 :GQER T0506 209 :TGRWKITSIDPDGIDLA 1ty9A 202 :LHERLRYDRSDTGWNVR Number of specific fragments extracted= 12 number of extra gaps= 3 total=3996 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_749511810.pdb -s /var/tmp/to_scwrl_749511810.seq -o /var/tmp/from_scwrl_749511810.pdb > /var/tmp/scwrl_749511810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749511810.pdb Number of alignments=457 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)V203 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)D218 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)P219 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)Q251 because last residue in template chain is (1ty9A)P222 T0506 17 :EPSAGAPFEAVRVARDVLHTSR 1ty9A 28 :PEYQTLPADPMSVLHNWLERAR T0506 39 :TAALATLDP 1ty9A 58 :ALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPKAKLYLS 1ty9A 133 :DDAWLKRPYATHPMSSVSRQ T0506 166 :TPAD 1ty9A 153 :SEEL T0506 175 :SGAEELMAAAESE 1ty9A 157 :QDVQAMRNAARQL T0506 200 :RLA 1ty9A 170 :AEL T0506 205 :AGAKTGRWKITSI 1ty9A 175 :PLPRPEGYCVFEL T0506 220 :DGIDLAS 1ty9A 190 :ESLEFWG T0506 227 :ASDLARLWFAERVETLKQFEKALA 1ty9A 198 :GQERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=4008 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_931911308.pdb -s /var/tmp/to_scwrl_931911308.seq -o /var/tmp/from_scwrl_931911308.pdb > /var/tmp/scwrl_931911308.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_931911308.pdb Number of alignments=458 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)G21 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)V203 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)K247 because last residue in template chain is (1ty9A)P222 T0506 23 :PFEAVRVARDV 1ty9A 23 :LDAPFPEYQTL T0506 34 :LHTSRTAALATLDP 1ty9A 53 :IREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPKA 1ty9A 133 :DDAWLKRPYATHPMS T0506 161 :NASNITPADLRTDLS 1ty9A 148 :SVSRQSEELQDVQAM T0506 193 :AIKGEASRLA 1ty9A 163 :RNAARQLAEL T0506 205 :AGAK 1ty9A 175 :PLPR T0506 209 :TGRW 1ty9A 184 :VFEL T0506 215 :TSIDPDGIDLASASDLARLWFAERVETLKQFE 1ty9A 190 :ESLEFWGNGQERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 11 number of extra gaps= 3 total=4019 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_54065784.pdb -s /var/tmp/to_scwrl_54065784.seq -o /var/tmp/from_scwrl_54065784.pdb > /var/tmp/scwrl_54065784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54065784.pdb Number of alignments=459 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)V203 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 13 :GTKIEPSAGAPFEAVRVARDV 1ty9A 31 :QTLPADPMSVLHNWLERARRV T0506 34 :LHTSRTAALATLDP 1ty9A 53 :IREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPKAKLYLSL 1ty9A 133 :DDAWLKRPYATHPMSSVSRQS T0506 167 :PADLR 1ty9A 154 :EELQD T0506 177 :AEELM 1ty9A 159 :VQAMR T0506 194 :IKGEASRLA 1ty9A 164 :NAARQLAEL T0506 205 :AGAK 1ty9A 175 :PLPR T0506 209 :TGRW 1ty9A 184 :VFEL T0506 215 :TSIDPDGIDLASASDLARLWFAERVET 1ty9A 190 :ESLEFWGNGQERLHERLRYDRSDTGWN T0506 249 :LAQLLK 1ty9A 217 :VRRLQP Number of specific fragments extracted= 13 number of extra gaps= 3 total=4032 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1789109424.pdb -s /var/tmp/to_scwrl_1789109424.seq -o /var/tmp/from_scwrl_1789109424.pdb > /var/tmp/scwrl_1789109424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1789109424.pdb Number of alignments=460 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)L242 because last residue in template chain is (1ty9A)P222 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPKAKLYLSLPDT 1ty9A 133 :DDAWLKRPYATHPMSSVSRQSEEL T0506 194 :IKGEASRLAVLAGAK 1ty9A 157 :QDVQAMRNAARQLAE T0506 210 :GRWKITSIDPDGIDLASASDLARLWFAERVET 1ty9A 190 :ESLEFWGNGQERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 8 number of extra gaps= 2 total=4040 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1902701793.pdb -s /var/tmp/to_scwrl_1902701793.seq -o /var/tmp/from_scwrl_1902701793.pdb > /var/tmp/scwrl_1902701793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1902701793.pdb Number of alignments=461 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)D229 because last residue in template chain is (1ty9A)P222 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYP 1ty9A 133 :DDAWLKRPYATHP T0506 133 :AK 1ty9A 165 :AA T0506 139 :LPDTRLYRL 1ty9A 179 :PEGYCVFEL T0506 150 :EGVQINGG 1ty9A 190 :ESLEFWGN T0506 159 :AR 1ty9A 198 :GQ T0506 209 :TGRWKITSIDPDGIDLASAS 1ty9A 202 :LHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 11 number of extra gaps= 2 total=4051 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1532927029.pdb -s /var/tmp/to_scwrl_1532927029.seq -o /var/tmp/from_scwrl_1532927029.pdb > /var/tmp/scwrl_1532927029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1532927029.pdb Number of alignments=462 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)V239 because last residue in template chain is (1ty9A)P222 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 122 :AIARYIAR 1ty9A 132 :ADDAWLKR T0506 131 :PKAKL 1ty9A 140 :PYATH T0506 179 :ELMAAAESEATR 1ty9A 145 :PMSSVSRQSEEL T0506 194 :IKGEASRLAVLAGAK 1ty9A 157 :QDVQAMRNAARQLAE T0506 211 :RW 1ty9A 186 :EL T0506 215 :TSIDPDG 1ty9A 190 :ESLEFWG T0506 222 :IDLAS 1ty9A 202 :LHERL T0506 227 :ASDLARLWFAER 1ty9A 210 :RSDTGWNVRRLQ Number of specific fragments extracted= 13 number of extra gaps= 2 total=4064 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_450139579.pdb -s /var/tmp/to_scwrl_450139579.seq -o /var/tmp/from_scwrl_450139579.pdb > /var/tmp/scwrl_450139579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_450139579.pdb Number of alignments=463 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)L242 because last residue in template chain is (1ty9A)P222 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPKAKLYLSLPD 1ty9A 133 :DDAWLKRPYATHPMSSVSRQSEE T0506 174 :LS 1ty9A 156 :LQ T0506 195 :KGEASRLAVLAGAK 1ty9A 158 :DVQAMRNAARQLAE T0506 209 :TGRW 1ty9A 184 :VFEL T0506 215 :TSIDPDGIDLASASDLARLWFA 1ty9A 190 :ESLEFWGNGQERLHERLRYDRS T0506 237 :ERVET 1ty9A 217 :VRRLQ Number of specific fragments extracted= 11 number of extra gaps= 2 total=4075 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1505932030.pdb -s /var/tmp/to_scwrl_1505932030.seq -o /var/tmp/from_scwrl_1505932030.pdb > /var/tmp/scwrl_1505932030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1505932030.pdb Number of alignments=464 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)G21 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)L191 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)N192 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)L242 because last residue in template chain is (1ty9A)P222 T0506 23 :P 1ty9A 34 :P T0506 24 :FEAVRVARDV 1ty9A 42 :HNWLERARRV T0506 34 :LHTSRTAALATLDP 1ty9A 53 :IREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPKA 1ty9A 133 :DDAWLKRPYATHPMS T0506 163 :SNITPA 1ty9A 148 :SVSRQS T0506 172 :TDLSGAEELMAAAESEATR 1ty9A 154 :EELQDVQAMRNAARQLAEL T0506 193 :AIK 1ty9A 175 :PLP T0506 198 :ASRLAVLAGA 1ty9A 178 :RPEGYCVFEL T0506 210 :GRWKITSIDPDGIDLASASDLARLWFAERVET 1ty9A 190 :ESLEFWGNGQERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=4087 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_722411869.pdb -s /var/tmp/to_scwrl_722411869.seq -o /var/tmp/from_scwrl_722411869.pdb > /var/tmp/scwrl_722411869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_722411869.pdb Number of alignments=465 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)E17 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)V239 because last residue in template chain is (1ty9A)P222 T0506 19 :SAGA 1ty9A 23 :LDAP T0506 23 :PFEAVRVARDVLHTSRT 1ty9A 34 :PADPMSVLHNWLERARR T0506 40 :AALATLDP 1ty9A 59 :LALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 122 :AIARYIAR 1ty9A 132 :ADDAWLKR T0506 131 :PKAK 1ty9A 140 :PYAT T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGG 1ty9A 190 :ESLEFWGN T0506 223 :DLAS 1ty9A 205 :RLRY T0506 227 :ASDLARLWFAER 1ty9A 210 :RSDTGWNVRRLQ Number of specific fragments extracted= 12 number of extra gaps= 2 total=4099 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1948756414.pdb -s /var/tmp/to_scwrl_1948756414.seq -o /var/tmp/from_scwrl_1948756414.pdb > /var/tmp/scwrl_1948756414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1948756414.pdb Number of alignments=466 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I16 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)E17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)E237 because last residue in template chain is (1ty9A)P222 T0506 18 :PSAGA 1ty9A 23 :LDAPF T0506 23 :PFEAVRVARDVLHTSRT 1ty9A 34 :PADPMSVLHNWLERARR T0506 40 :AALATLDP 1ty9A 59 :LALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWR T0506 100 :LTLPRLTLVGRADRIGPDEVPLAI 1ty9A 113 :ETSQQIILNGQAVRLPNAKADDAW T0506 128 :ARYPKAKL 1ty9A 137 :LKRPYATH T0506 136 :YLSLPDTRLYRL 1ty9A 176 :LPRPEGYCVFEL T0506 150 :EGVQINGGP 1ty9A 190 :ESLEFWGNG T0506 223 :DLAS 1ty9A 205 :RLRY T0506 227 :ASDLARLWFA 1ty9A 212 :DTGWNVRRLQ Number of specific fragments extracted= 11 number of extra gaps= 2 total=4110 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1740666365.pdb -s /var/tmp/to_scwrl_1740666365.seq -o /var/tmp/from_scwrl_1740666365.pdb > /var/tmp/scwrl_1740666365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1740666365.pdb Number of alignments=467 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K134 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)D229 because last residue in template chain is (1ty9A)P222 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPK 1ty9A 159 :VQAMRNAARQLAEL T0506 135 :LYLSLPDTRLYRL 1ty9A 175 :PLPRPEGYCVFEL T0506 150 :EGVQINGGP 1ty9A 190 :ESLEFWGNG T0506 206 :GAKTGRWKITSIDPDGIDLASAS 1ty9A 199 :QERLHERLRYDRSDTGWNVRRLQ Number of specific fragments extracted= 9 number of extra gaps= 3 total=4119 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1453313804.pdb -s /var/tmp/to_scwrl_1453313804.seq -o /var/tmp/from_scwrl_1453313804.pdb > /var/tmp/scwrl_1453313804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1453313804.pdb Number of alignments=468 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)V239 because last residue in template chain is (1ty9A)P222 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRET T0506 102 :LPRLTLVGRADRIGPD 1ty9A 115 :SQQIILNGQAVRLPNA T0506 121 :LAIARYIARYPKA 1ty9A 131 :KADDAWLKRPYAT T0506 178 :EELMAAAESEATR 1ty9A 144 :HPMSSVSRQSEEL T0506 194 :IKGEASRLAVLAGAK 1ty9A 157 :QDVQAMRNAARQLAE T0506 211 :RW 1ty9A 186 :EL T0506 215 :TSIDPDG 1ty9A 190 :ESLEFWG T0506 222 :ID 1ty9A 202 :LH T0506 224 :LASAS 1ty9A 206 :LRYDR T0506 229 :DLARLWFAER 1ty9A 212 :DTGWNVRRLQ Number of specific fragments extracted= 13 number of extra gaps= 2 total=4132 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1832915682.pdb -s /var/tmp/to_scwrl_1832915682.seq -o /var/tmp/from_scwrl_1832915682.pdb > /var/tmp/scwrl_1832915682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1832915682.pdb Number of alignments=469 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 39 :TAALATLDP 1ty9A 58 :ALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYP 1ty9A 133 :DDAWLKRPYATHP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4137 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_14336796.pdb -s /var/tmp/to_scwrl_14336796.seq -o /var/tmp/from_scwrl_14336796.pdb > /var/tmp/scwrl_14336796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_14336796.pdb Number of alignments=470 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 34 :LHTSRTAALATLDP 1ty9A 53 :IREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYP 1ty9A 133 :DDAWLKRPYATHP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4142 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_373966431.pdb -s /var/tmp/to_scwrl_373966431.seq -o /var/tmp/from_scwrl_373966431.pdb > /var/tmp/scwrl_373966431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373966431.pdb Number of alignments=471 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 24 :FEAVRVARDV 1ty9A 42 :HNWLERARRV T0506 34 :LHTSRTAALATLDP 1ty9A 53 :IREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYP 1ty9A 133 :DDAWLKRPYATHP Number of specific fragments extracted= 6 number of extra gaps= 1 total=4148 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_654087765.pdb -s /var/tmp/to_scwrl_654087765.seq -o /var/tmp/from_scwrl_654087765.pdb > /var/tmp/scwrl_654087765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_654087765.pdb Number of alignments=472 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 40 :AALATLDP 1ty9A 59 :LALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 122 :AIARYI 1ty9A 132 :ADDAWL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4153 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1020368988.pdb -s /var/tmp/to_scwrl_1020368988.seq -o /var/tmp/from_scwrl_1020368988.pdb > /var/tmp/scwrl_1020368988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020368988.pdb Number of alignments=473 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 40 :AALATLDP 1ty9A 59 :LALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDEVPLA 1ty9A 116 :QQIILNGQAVRLPNAKADDA Number of specific fragments extracted= 4 number of extra gaps= 1 total=4157 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_999676315.pdb -s /var/tmp/to_scwrl_999676315.seq -o /var/tmp/from_scwrl_999676315.pdb > /var/tmp/scwrl_999676315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999676315.pdb Number of alignments=474 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 122 :AIARYIAR 1ty9A 132 :ADDAWLKR Number of specific fragments extracted= 6 number of extra gaps= 1 total=4163 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1802846392.pdb -s /var/tmp/to_scwrl_1802846392.seq -o /var/tmp/from_scwrl_1802846392.pdb > /var/tmp/scwrl_1802846392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802846392.pdb Number of alignments=475 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 23 :PFEAVRVARDV 1ty9A 41 :LHNWLERARRV T0506 34 :LHTSRTAALATLDP 1ty9A 53 :IREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIARYIARYPKAKLY 1ty9A 133 :DDAWLKRPYATHPMSSVS Number of specific fragments extracted= 6 number of extra gaps= 1 total=4169 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_975547924.pdb -s /var/tmp/to_scwrl_975547924.seq -o /var/tmp/from_scwrl_975547924.pdb > /var/tmp/scwrl_975547924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_975547924.pdb Number of alignments=476 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 24 :FEAVRVARDV 1ty9A 42 :HNWLERARRV T0506 34 :LHTSRTAALATLDP 1ty9A 53 :IREPRALALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 119 :VPLAIA 1ty9A 133 :DDAWLK Number of specific fragments extracted= 6 number of extra gaps= 1 total=4175 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1969284204.pdb -s /var/tmp/to_scwrl_1969284204.seq -o /var/tmp/from_scwrl_1969284204.pdb > /var/tmp/scwrl_1969284204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1969284204.pdb Number of alignments=477 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)G174 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)G174 Warning: unaligning (T0506)D218 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)P219 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 11 :PRGTKIE 1ty9A 23 :LDAPFPE T0506 19 :SAGAPFEAVRVARDVLHTSRT 1ty9A 30 :YQTLPADPMSVLHNWLERARR T0506 40 :AALATLDP 1ty9A 59 :LALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 122 :AIARYIAR 1ty9A 132 :ADDAWLKR T0506 131 :PKAKLYLS 1ty9A 140 :PYATHPMS T0506 169 :DLRTDLSGAEELMAAAESEAT 1ty9A 151 :RQSEELQDVQAMRNAARQLAE T0506 206 :G 1ty9A 172 :L T0506 209 :TGRWKITSI 1ty9A 179 :PEGYCVFEL T0506 220 :DGIDLASA 1ty9A 190 :ESLEFWGN Number of specific fragments extracted= 12 number of extra gaps= 3 total=4187 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_940633512.pdb -s /var/tmp/to_scwrl_940633512.seq -o /var/tmp/from_scwrl_940633512.pdb > /var/tmp/scwrl_940633512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_940633512.pdb Number of alignments=478 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 19 :SAGAPFEAVRVARDVLHTSRT 1ty9A 30 :YQTLPADPMSVLHNWLERARR T0506 40 :AALATLDP 1ty9A 59 :LALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWR T0506 100 :LTLPRLTLVGRADRIGPDEVPLAI 1ty9A 113 :ETSQQIILNGQAVRLPNAKADDAW T0506 128 :ARYPKAKL 1ty9A 137 :LKRPYATH T0506 136 :YLSLPDTRLYRL 1ty9A 176 :LPRPEGYCVFEL T0506 150 :EGVQINGGP 1ty9A 190 :ESLEFWGNG Number of specific fragments extracted= 8 number of extra gaps= 2 total=4195 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1292571757.pdb -s /var/tmp/to_scwrl_1292571757.seq -o /var/tmp/from_scwrl_1292571757.pdb > /var/tmp/scwrl_1292571757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1292571757.pdb Number of alignments=479 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1ty9A)G21 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)T22 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSRTA 1ty9A 23 :LDAPFPEYQTLPADPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETS T0506 103 :PRLTLVGRADRIGPDE 1ty9A 116 :QQIILNGQAVRLPNAK T0506 122 :AIARYIAR 1ty9A 132 :ADDAWLKR Number of specific fragments extracted= 6 number of extra gaps= 1 total=4201 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1550597918.pdb -s /var/tmp/to_scwrl_1550597918.seq -o /var/tmp/from_scwrl_1550597918.pdb > /var/tmp/scwrl_1550597918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550597918.pdb Number of alignments=480 # 1ty9A read from all-align.a2m # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)I80 T0506 24 :FEAVRVARDVLHTSRTA 1ty9A 36 :DPMSVLHNWLERARRVG T0506 41 :ALATLDP 1ty9A 60 :ALATADS T0506 49 :SGYPYTTATNIG 1ty9A 67 :QGRPSTRIVVIS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 1ty9A 81 :SDAGVVFSTHAGSQKGRELLHNPWASGVLYWRET T0506 102 :LPRLTLVGRADRIGPD 1ty9A 115 :SQQIILNGQAVRLPNA T0506 121 :LAIARYIARY 1ty9A 131 :KADDAWLKRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=4207 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1137447145.pdb -s /var/tmp/to_scwrl_1137447145.seq -o /var/tmp/from_scwrl_1137447145.pdb > /var/tmp/scwrl_1137447145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1137447145.pdb Number of alignments=481 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)K247 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLF T0506 92 :APFGKGDALTLPRLTLVGRADRIGPD 1vl7A 74 :DEAKTNQIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKAKL 1vl7A 102 :KWNQVVDQFQERFGQIIE T0506 226 :SASDLARLWF 1vl7A 120 :VLRGLADFRI T0506 236 :AERVETLKQFE 1vl7A 134 :PKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4213 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2102750630.pdb -s /var/tmp/to_scwrl_2102750630.seq -o /var/tmp/from_scwrl_2102750630.pdb > /var/tmp/scwrl_2102750630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2102750630.pdb Number of alignments=482 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)K247 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLF T0506 92 :APFGKGDALTLPRLTLVGRADRIGPD 1vl7A 74 :DEAKTNQIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKAKL 1vl7A 102 :KWNQVVDQFQERFGQIIE T0506 230 :LARLWF 1vl7A 124 :LADFRI T0506 236 :AERVETLKQFE 1vl7A 134 :PKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4219 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_863868861.pdb -s /var/tmp/to_scwrl_863868861.seq -o /var/tmp/from_scwrl_863868861.pdb > /var/tmp/scwrl_863868861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863868861.pdb Number of alignments=483 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLF T0506 92 :APFGKGDALTLPRLTLVGRADRIGPD 1vl7A 74 :DEAKTNQIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKA 1vl7A 102 :KWNQVVDQFQERFGQI T0506 134 :KLYLSLPDTRLYRLRTEGVQINGG 1vl7A 119 :EVLRGLADFRIFQLTPKEGRFVIG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4224 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1773329224.pdb -s /var/tmp/to_scwrl_1773329224.seq -o /var/tmp/from_scwrl_1773329224.pdb > /var/tmp/scwrl_1773329224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1773329224.pdb Number of alignments=484 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLF T0506 92 :APFGKGDALTLPRLTLVGRADRIGPD 1vl7A 74 :DEAKTNQIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKA 1vl7A 102 :KWNQVVDQFQERFGQI T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGP 1vl7A 119 :EVLRGLADFRIFQLTPKEGRFVIGF Number of specific fragments extracted= 5 number of extra gaps= 0 total=4229 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_933404625.pdb -s /var/tmp/to_scwrl_933404625.seq -o /var/tmp/from_scwrl_933404625.pdb > /var/tmp/scwrl_933404625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933404625.pdb Number of alignments=485 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKA 1vl7A 102 :KWNQVVDQFQERFGQI T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 119 :EVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4234 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2103086492.pdb -s /var/tmp/to_scwrl_2103086492.seq -o /var/tmp/from_scwrl_2103086492.pdb > /var/tmp/scwrl_2103086492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2103086492.pdb Number of alignments=486 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKA 1vl7A 102 :KWNQVVDQFQERFGQI T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 119 :EVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4239 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1674434541.pdb -s /var/tmp/to_scwrl_1674434541.seq -o /var/tmp/from_scwrl_1674434541.pdb > /var/tmp/scwrl_1674434541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1674434541.pdb Number of alignments=487 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKA 1vl7A 102 :KWNQVVDQFQERFGQI T0506 134 :KLYLSLPDTRLYRLRTEGVQINGG 1vl7A 119 :EVLRGLADFRIFQLTPKEGRFVIG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4244 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1682916434.pdb -s /var/tmp/to_scwrl_1682916434.seq -o /var/tmp/from_scwrl_1682916434.pdb > /var/tmp/scwrl_1682916434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682916434.pdb Number of alignments=488 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 32 :DVLHTSRTAALATLDP 1vl7A 13 :GFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPKA 1vl7A 102 :KWNQVVDQFQERFGQI T0506 134 :KLYLSLPDTRLYRLRTEGVQINGG 1vl7A 119 :EVLRGLADFRIFQLTPKEGRFVIG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4249 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_887514153.pdb -s /var/tmp/to_scwrl_887514153.seq -o /var/tmp/from_scwrl_887514153.pdb > /var/tmp/scwrl_887514153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_887514153.pdb Number of alignments=489 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 50 :GYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1vl7A 30 :GIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4250 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1728500325.pdb -s /var/tmp/to_scwrl_1728500325.seq -o /var/tmp/from_scwrl_1728500325.pdb > /var/tmp/scwrl_1728500325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728500325.pdb Number of alignments=490 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4251 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1324542211.pdb -s /var/tmp/to_scwrl_1324542211.seq -o /var/tmp/from_scwrl_1324542211.pdb > /var/tmp/scwrl_1324542211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324542211.pdb Number of alignments=491 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4256 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_642732299.pdb -s /var/tmp/to_scwrl_642732299.seq -o /var/tmp/from_scwrl_642732299.pdb > /var/tmp/scwrl_642732299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642732299.pdb Number of alignments=492 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPKAKLYLSL 1vl7A 101 :QKWNQVVDQFQERFGQIIEVLRG T0506 140 :PDTRLYRLRTEGVQINGGPA 1vl7A 125 :ADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4261 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1113943708.pdb -s /var/tmp/to_scwrl_1113943708.seq -o /var/tmp/from_scwrl_1113943708.pdb > /var/tmp/scwrl_1113943708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113943708.pdb Number of alignments=493 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4266 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1774681791.pdb -s /var/tmp/to_scwrl_1774681791.seq -o /var/tmp/from_scwrl_1774681791.pdb > /var/tmp/scwrl_1774681791.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1774681791.pdb Number of alignments=494 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4271 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1180683.pdb -s /var/tmp/to_scwrl_1180683.seq -o /var/tmp/from_scwrl_1180683.pdb > /var/tmp/scwrl_1180683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1180683.pdb Number of alignments=495 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4276 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1836355577.pdb -s /var/tmp/to_scwrl_1836355577.seq -o /var/tmp/from_scwrl_1836355577.pdb > /var/tmp/scwrl_1836355577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836355577.pdb Number of alignments=496 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4281 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1575954558.pdb -s /var/tmp/to_scwrl_1575954558.seq -o /var/tmp/from_scwrl_1575954558.pdb > /var/tmp/scwrl_1575954558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1575954558.pdb Number of alignments=497 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4286 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1741847048.pdb -s /var/tmp/to_scwrl_1741847048.seq -o /var/tmp/from_scwrl_1741847048.pdb > /var/tmp/scwrl_1741847048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1741847048.pdb Number of alignments=498 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4291 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1142185734.pdb -s /var/tmp/to_scwrl_1142185734.seq -o /var/tmp/from_scwrl_1142185734.pdb > /var/tmp/scwrl_1142185734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1142185734.pdb Number of alignments=499 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4296 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1261386593.pdb -s /var/tmp/to_scwrl_1261386593.seq -o /var/tmp/from_scwrl_1261386593.pdb > /var/tmp/scwrl_1261386593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1261386593.pdb Number of alignments=500 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4301 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1756183845.pdb -s /var/tmp/to_scwrl_1756183845.seq -o /var/tmp/from_scwrl_1756183845.pdb > /var/tmp/scwrl_1756183845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1756183845.pdb Number of alignments=501 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :D 1vl7A 101 :Q T0506 119 :VPLAIARYIARYPKAKLYLSL 1vl7A 103 :WNQVVDQFQERFGQIIEVLRG T0506 140 :PDTRLYRLRTEGVQINGGPA 1vl7A 125 :ADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4307 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1516152166.pdb -s /var/tmp/to_scwrl_1516152166.seq -o /var/tmp/from_scwrl_1516152166.pdb > /var/tmp/scwrl_1516152166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1516152166.pdb Number of alignments=502 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4312 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1915474358.pdb -s /var/tmp/to_scwrl_1915474358.seq -o /var/tmp/from_scwrl_1915474358.pdb > /var/tmp/scwrl_1915474358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915474358.pdb Number of alignments=503 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4317 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_629069186.pdb -s /var/tmp/to_scwrl_629069186.seq -o /var/tmp/from_scwrl_629069186.pdb > /var/tmp/scwrl_629069186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_629069186.pdb Number of alignments=504 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPKAKLYLSL 1vl7A 101 :QKWNQVVDQFQERFGQIIEVLRG T0506 140 :PDTRLYRLRTEGVQINGGPA 1vl7A 125 :ADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4322 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_368344834.pdb -s /var/tmp/to_scwrl_368344834.seq -o /var/tmp/from_scwrl_368344834.pdb > /var/tmp/scwrl_368344834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368344834.pdb Number of alignments=505 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4327 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1570837103.pdb -s /var/tmp/to_scwrl_1570837103.seq -o /var/tmp/from_scwrl_1570837103.pdb > /var/tmp/scwrl_1570837103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1570837103.pdb Number of alignments=506 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4332 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1604617109.pdb -s /var/tmp/to_scwrl_1604617109.seq -o /var/tmp/from_scwrl_1604617109.pdb > /var/tmp/scwrl_1604617109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1604617109.pdb Number of alignments=507 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4337 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_190145391.pdb -s /var/tmp/to_scwrl_190145391.seq -o /var/tmp/from_scwrl_190145391.pdb > /var/tmp/scwrl_190145391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190145391.pdb Number of alignments=508 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4342 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_363986968.pdb -s /var/tmp/to_scwrl_363986968.seq -o /var/tmp/from_scwrl_363986968.pdb > /var/tmp/scwrl_363986968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_363986968.pdb Number of alignments=509 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4347 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_749705221.pdb -s /var/tmp/to_scwrl_749705221.seq -o /var/tmp/from_scwrl_749705221.pdb > /var/tmp/scwrl_749705221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749705221.pdb Number of alignments=510 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4352 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1740743309.pdb -s /var/tmp/to_scwrl_1740743309.seq -o /var/tmp/from_scwrl_1740743309.pdb > /var/tmp/scwrl_1740743309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1740743309.pdb Number of alignments=511 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4357 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1501434113.pdb -s /var/tmp/to_scwrl_1501434113.seq -o /var/tmp/from_scwrl_1501434113.pdb > /var/tmp/scwrl_1501434113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501434113.pdb Number of alignments=512 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4362 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_704972204.pdb -s /var/tmp/to_scwrl_704972204.seq -o /var/tmp/from_scwrl_704972204.pdb > /var/tmp/scwrl_704972204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704972204.pdb Number of alignments=513 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :D 1vl7A 101 :Q T0506 119 :VPLAIARYIARYPKAKLYLSL 1vl7A 103 :WNQVVDQFQERFGQIIEVLRG T0506 140 :PDTRLYRLRTEGVQINGGPA 1vl7A 125 :ADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4368 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_457128523.pdb -s /var/tmp/to_scwrl_457128523.seq -o /var/tmp/from_scwrl_457128523.pdb > /var/tmp/scwrl_457128523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457128523.pdb Number of alignments=514 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 T0506 31 :RDVLHTSRTAALATLD 1vl7A 12 :AGFIQEFQSAIISTIS T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 28 :EQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGP 1vl7A 80 :QIFARRRLSFDCTATLIER T0506 117 :DEVPLAIARYIARYPK 1vl7A 101 :QKWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4373 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1127279691.pdb -s /var/tmp/to_scwrl_1127279691.seq -o /var/tmp/from_scwrl_1127279691.pdb > /var/tmp/scwrl_1127279691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1127279691.pdb Number of alignments=515 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)P23 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 24 :FEAVR 1vl7A 12 :AGFIQ T0506 36 :TSRTAALATLDP 1vl7A 17 :EFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4379 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1638376828.pdb -s /var/tmp/to_scwrl_1638376828.seq -o /var/tmp/from_scwrl_1638376828.pdb > /var/tmp/scwrl_1638376828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1638376828.pdb Number of alignments=516 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPKAKLYLS 1vl7A 103 :WNQVVDQFQERFGQIIEVLR T0506 139 :LPDTRLYRLRTEGVQINGGPA 1vl7A 124 :LADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4384 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_412731369.pdb -s /var/tmp/to_scwrl_412731369.seq -o /var/tmp/from_scwrl_412731369.pdb > /var/tmp/scwrl_412731369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_412731369.pdb Number of alignments=517 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4389 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_654230586.pdb -s /var/tmp/to_scwrl_654230586.seq -o /var/tmp/from_scwrl_654230586.pdb > /var/tmp/scwrl_654230586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_654230586.pdb Number of alignments=518 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4394 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1173809616.pdb -s /var/tmp/to_scwrl_1173809616.seq -o /var/tmp/from_scwrl_1173809616.pdb > /var/tmp/scwrl_1173809616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173809616.pdb Number of alignments=519 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPK 1vl7A 102 :KWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4399 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1300245521.pdb -s /var/tmp/to_scwrl_1300245521.seq -o /var/tmp/from_scwrl_1300245521.pdb > /var/tmp/scwrl_1300245521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300245521.pdb Number of alignments=520 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4404 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_235247265.pdb -s /var/tmp/to_scwrl_235247265.seq -o /var/tmp/from_scwrl_235247265.pdb > /var/tmp/scwrl_235247265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_235247265.pdb Number of alignments=521 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDE T0506 96 :KGDALTLPRLTLVGRADRIGPD 1vl7A 78 :TNQIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4409 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_350868181.pdb -s /var/tmp/to_scwrl_350868181.seq -o /var/tmp/from_scwrl_350868181.pdb > /var/tmp/scwrl_350868181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_350868181.pdb Number of alignments=522 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)P23 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 24 :FEA 1vl7A 12 :AGF T0506 34 :LHTSRTAALATLDP 1vl7A 15 :IQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4415 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1942977821.pdb -s /var/tmp/to_scwrl_1942977821.seq -o /var/tmp/from_scwrl_1942977821.pdb > /var/tmp/scwrl_1942977821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1942977821.pdb Number of alignments=523 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)P23 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 24 :FEAV 1vl7A 12 :AGFI T0506 35 :HTSRTAALATLDP 1vl7A 16 :QEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDE T0506 97 :G 1vl7A 77 :K T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 7 number of extra gaps= 0 total=4422 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1349190973.pdb -s /var/tmp/to_scwrl_1349190973.seq -o /var/tmp/from_scwrl_1349190973.pdb > /var/tmp/scwrl_1349190973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349190973.pdb Number of alignments=524 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)P23 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 24 :FEA 1vl7A 12 :AGF T0506 34 :LHTSRTAALATLDP 1vl7A 15 :IQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPK 1vl7A 102 :KWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4428 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2125549972.pdb -s /var/tmp/to_scwrl_2125549972.seq -o /var/tmp/from_scwrl_2125549972.pdb > /var/tmp/scwrl_2125549972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125549972.pdb Number of alignments=525 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4433 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1944158504.pdb -s /var/tmp/to_scwrl_1944158504.seq -o /var/tmp/from_scwrl_1944158504.pdb > /var/tmp/scwrl_1944158504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1944158504.pdb Number of alignments=526 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set Warning: unaligning (T0506)A30 because first residue in template chain is (1vl7A)Y11 Warning: unaligning (T0506)R160 because last residue in template chain is (1vl7A)A145 T0506 31 :RDVLHTSRTAALATLDP 1vl7A 12 :AGFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDE T0506 96 :KGDALTLPRLTLVGRADRIGPDE 1vl7A 78 :TNQIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4438 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1038062904.pdb -s /var/tmp/to_scwrl_1038062904.seq -o /var/tmp/from_scwrl_1038062904.pdb > /var/tmp/scwrl_1038062904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038062904.pdb Number of alignments=527 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 39 :TAALATLDP 1vl7A 20 :SAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4443 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1554020883.pdb -s /var/tmp/to_scwrl_1554020883.seq -o /var/tmp/from_scwrl_1554020883.pdb > /var/tmp/scwrl_1554020883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554020883.pdb Number of alignments=528 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 40 :AALATLDP 1vl7A 21 :AIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPKAKLYLS 1vl7A 103 :WNQVVDQFQERFGQIIEVLR T0506 139 :LPDTRLYRLRTEGVQINGGPA 1vl7A 124 :LADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4448 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1538521905.pdb -s /var/tmp/to_scwrl_1538521905.seq -o /var/tmp/from_scwrl_1538521905.pdb > /var/tmp/scwrl_1538521905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1538521905.pdb Number of alignments=529 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 36 :TSRTAALATLDP 1vl7A 17 :EFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4453 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_32764992.pdb -s /var/tmp/to_scwrl_32764992.seq -o /var/tmp/from_scwrl_32764992.pdb > /var/tmp/scwrl_32764992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_32764992.pdb Number of alignments=530 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 33 :VLHTSRTAALATLDP 1vl7A 14 :FIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4458 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_667923830.pdb -s /var/tmp/to_scwrl_667923830.seq -o /var/tmp/from_scwrl_667923830.pdb > /var/tmp/scwrl_667923830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_667923830.pdb Number of alignments=531 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 32 :DVLHTSRTAALATLDP 1vl7A 13 :GFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPK 1vl7A 102 :KWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4463 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1147222103.pdb -s /var/tmp/to_scwrl_1147222103.seq -o /var/tmp/from_scwrl_1147222103.pdb > /var/tmp/scwrl_1147222103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147222103.pdb Number of alignments=532 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 33 :VLHTSRTAALATLDP 1vl7A 14 :FIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4468 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1548917158.pdb -s /var/tmp/to_scwrl_1548917158.seq -o /var/tmp/from_scwrl_1548917158.pdb > /var/tmp/scwrl_1548917158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1548917158.pdb Number of alignments=533 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 36 :TSRTAALATLDP 1vl7A 17 :EFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDE T0506 96 :KGDALTLPRLTLVGRADRIGPD 1vl7A 78 :TNQIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4473 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_435914542.pdb -s /var/tmp/to_scwrl_435914542.seq -o /var/tmp/from_scwrl_435914542.pdb > /var/tmp/scwrl_435914542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_435914542.pdb Number of alignments=534 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 38 :RTAALATLDP 1vl7A 19 :QSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPDE 1vl7A 80 :QIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4478 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1776291289.pdb -s /var/tmp/to_scwrl_1776291289.seq -o /var/tmp/from_scwrl_1776291289.pdb > /var/tmp/scwrl_1776291289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776291289.pdb Number of alignments=535 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 39 :TAALATLDP 1vl7A 20 :SAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDE T0506 97 :G 1vl7A 77 :K T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 6 number of extra gaps= 0 total=4484 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1917261992.pdb -s /var/tmp/to_scwrl_1917261992.seq -o /var/tmp/from_scwrl_1917261992.pdb > /var/tmp/scwrl_1917261992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1917261992.pdb Number of alignments=536 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 34 :LHTSRTAALATLDP 1vl7A 15 :IQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 118 :EVPLAIARYIARYPK 1vl7A 102 :KWNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4489 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2006751645.pdb -s /var/tmp/to_scwrl_2006751645.seq -o /var/tmp/from_scwrl_2006751645.pdb > /var/tmp/scwrl_2006751645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006751645.pdb Number of alignments=537 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 34 :LHTSRTAALATLDP 1vl7A 15 :IQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAK T0506 98 :DALTLPRLTLVGRADRIGPD 1vl7A 80 :QIFARRRLSFDCTATLIERE T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4494 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1233424752.pdb -s /var/tmp/to_scwrl_1233424752.seq -o /var/tmp/from_scwrl_1233424752.pdb > /var/tmp/scwrl_1233424752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233424752.pdb Number of alignments=538 # 1vl7A read from all-align.a2m # found chain 1vl7A in training set T0506 32 :DVLHTSRTAALATLDP 1vl7A 13 :GFIQEFQSAIISTISE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 1vl7A 29 :QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDE T0506 96 :KGDALTLPRLTLVGRADRIGPDE 1vl7A 78 :TNQIFARRRLSFDCTATLIERES T0506 119 :VPLAIARYIARYPK 1vl7A 103 :WNQVVDQFQERFGQ T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPA 1vl7A 118 :IEVLRGLADFRIFQLTPKEGRFVIGFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=4499 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2107407383.pdb -s /var/tmp/to_scwrl_2107407383.seq -o /var/tmp/from_scwrl_2107407383.pdb > /var/tmp/scwrl_2107407383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107407383.pdb Number of alignments=539 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)L233 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)W234 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 6 :PPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :DPVSGY 1w3oA 44 :QGEDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEI T0506 98 :DALTLPRL 1w3oA 96 :GQFLPSNS T0506 106 :TLVGRADRIGPDEVPLAIARYIARYP 1w3oA 115 :MVFGTARVLAGEDARAALTTLSERVF T0506 210 :GRWKITSIDPD 1w3oA 141 :PGLKVGETTRP T0506 221 :GIDLASASDLAR 1w3oA 162 :VYSLSIDRWSGK T0506 235 :FAERVETLKQFEKALAQLLK 1w3oA 176 :WAEQAIQEEDWPALGPEWLG Number of specific fragments extracted= 9 number of extra gaps= 1 total=4508 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_223254967.pdb -s /var/tmp/to_scwrl_223254967.seq -o /var/tmp/from_scwrl_223254967.pdb > /var/tmp/scwrl_223254967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223254967.pdb Number of alignments=540 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)L233 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)W234 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 8 :VITPRGTKIEPS 1w3oA 3 :DFYDPRERDPSV T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 1w3oA 17 :RPQNRQSDEWIRELLLRGTIARVATL T0506 46 :DPVSGY 1w3oA 44 :QGEDGA T0506 52 :PYTTATNIGIEPDGTPFF 1w3oA 52 :PFITPLAYAYRPEQGDLV T0506 70 :FAAGLTLHARNMETDARISVTLAP 1w3oA 71 :HTNVVGRLRANAGQGHPATLEVSE T0506 97 :GDALTLPRL 1w3oA 95 :IGQFLPSNS T0506 106 :TLVGRADRIGPDEVPLAIARYIARYP 1w3oA 115 :MVFGTARVLAGEDARAALTTLSERVF T0506 210 :GRWKITSIDPDGID 1w3oA 141 :PGLKVGETTRPISE T0506 224 :LASASDLAR 1w3oA 165 :LSIDRWSGK T0506 235 :FAERVETLKQFEKALAQLLK 1w3oA 176 :WAEQAIQEEDWPALGPEWLG Number of specific fragments extracted= 10 number of extra gaps= 1 total=4518 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1983129973.pdb -s /var/tmp/to_scwrl_1983129973.seq -o /var/tmp/from_scwrl_1983129973.pdb > /var/tmp/scwrl_1983129973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983129973.pdb Number of alignments=541 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 31 :RDVLHTSRTAALATL 1w3oA 28 :RELLLRGTIARVATL T0506 46 :DPVSGY 1w3oA 44 :QGEDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEI T0506 98 :DALTLPRL 1w3oA 96 :GQFLPSNS T0506 106 :TLVGRADRIGPDEVPLAIARYIARYPK 1w3oA 115 :MVFGTARVLAGEDARAALTTLSERVFP Number of specific fragments extracted= 6 number of extra gaps= 0 total=4524 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1700667046.pdb -s /var/tmp/to_scwrl_1700667046.seq -o /var/tmp/from_scwrl_1700667046.pdb > /var/tmp/scwrl_1700667046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700667046.pdb Number of alignments=542 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 28 :RVARDVLHTSRTAALATL 1w3oA 25 :EWIRELLLRGTIARVATL T0506 46 :DPVSGY 1w3oA 44 :QGEDGA T0506 52 :PYTTATNIGIEPDGTPFF 1w3oA 52 :PFITPLAYAYRPEQGDLV T0506 70 :FAAGLTLHARNMETDARISVTLAP 1w3oA 71 :HTNVVGRLRANAGQGHPATLEVSE T0506 97 :GDALTLPRL 1w3oA 95 :IGQFLPSNS T0506 106 :TLVGRADRIGPDEVPLAIARYIARYPKAKL 1w3oA 115 :MVFGTARVLAGEDARAALTTLSERVFPGLK T0506 136 :YLS 1w3oA 149 :TRP T0506 139 :LPDTRLYRLRTEGVQI 1w3oA 157 :LKRTSVYSLSIDRWSG Number of specific fragments extracted= 8 number of extra gaps= 0 total=4532 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1724689080.pdb -s /var/tmp/to_scwrl_1724689080.seq -o /var/tmp/from_scwrl_1724689080.pdb > /var/tmp/scwrl_1724689080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724689080.pdb Number of alignments=543 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w3oA)S2 Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)S163 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)A183 because last residue in template chain is (1w3oA)G195 T0506 1 :MLD 1w3oA -14 :HHH T0506 6 :PPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :DPVSGYPYTTATNIGIEPDGTPFFF 1w3oA 46 :EDGAAFPFITPLAYAYRPEQGDLVY T0506 71 :AAGLTLHARNMETDARISVTLAPFGK 1w3oA 72 :TNVVGRLRANAGQGHPATLEVSEIGQ T0506 97 :GDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKA 1w3oA 106 :ELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPG T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPAR 1w3oA 147 :ETTRPISEDDLKRTSVYSLSIDRWSGK T0506 164 :NITPADLRTDLSGAEELMA 1w3oA 176 :WAEQAIQEEDWPALGPEWL Number of specific fragments extracted= 7 number of extra gaps= 1 total=4539 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_540618530.pdb -s /var/tmp/to_scwrl_540618530.seq -o /var/tmp/from_scwrl_540618530.pdb > /var/tmp/scwrl_540618530.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540618530.pdb Number of alignments=544 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w3oA)S2 Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)S163 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)A183 because last residue in template chain is (1w3oA)G195 T0506 1 :MLD 1w3oA -14 :HHH T0506 6 :PPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :DPVSGYPYTTATNIGIEPDGTPFFF 1w3oA 46 :EDGAAFPFITPLAYAYRPEQGDLVY T0506 72 :AGLTLHARNMETDARISVTLAP 1w3oA 73 :NVVGRLRANAGQGHPATLEVSE T0506 97 :GDALTLP 1w3oA 95 :IGQFLPS T0506 104 :RLTLVGRADRIGPDEVPLAIARYIARYPKA 1w3oA 113 :SVMVFGTARVLAGEDARAALTTLSERVFPG T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPAR 1w3oA 147 :ETTRPISEDDLKRTSVYSLSIDRWSGK T0506 164 :NITPADLRTDLSGAEELMA 1w3oA 176 :WAEQAIQEEDWPALGPEWL Number of specific fragments extracted= 8 number of extra gaps= 1 total=4547 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_10311922.pdb -s /var/tmp/to_scwrl_10311922.seq -o /var/tmp/from_scwrl_10311922.pdb > /var/tmp/scwrl_10311922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_10311922.pdb Number of alignments=545 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 32 :DVLHTSRTAALATL 1w3oA 29 :ELLLRGTIARVATL T0506 46 :DPVSGYPYTTATNIGIEPDGTPFFF 1w3oA 46 :EDGAAFPFITPLAYAYRPEQGDLVY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4549 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_704485125.pdb -s /var/tmp/to_scwrl_704485125.seq -o /var/tmp/from_scwrl_704485125.pdb > /var/tmp/scwrl_704485125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704485125.pdb Number of alignments=546 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 T0506 29 :VARDVLHTSRTAALATL 1w3oA 26 :WIRELLLRGTIARVATL T0506 46 :DPVSGYPYTTATNIGIEPDGTPFFF 1w3oA 46 :EDGAAFPFITPLAYAYRPEQGDLVY T0506 72 :AGLTLHARNMETDARISVTLAP 1w3oA 73 :NVVGRLRANAGQGHPATLEVSE T0506 97 :GDALTLP 1w3oA 95 :IGQFLPS T0506 104 :RLTLVGRADRIGPDEVPLAIARYIARYPKA 1w3oA 113 :SVMVFGTARVLAGEDARAALTTLSERVFPG T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPAR 1w3oA 147 :ETTRPISEDDLKRTSVYSLSIDRWSGK Number of specific fragments extracted= 6 number of extra gaps= 1 total=4555 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_31511712.pdb -s /var/tmp/to_scwrl_31511712.seq -o /var/tmp/from_scwrl_31511712.pdb > /var/tmp/scwrl_31511712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31511712.pdb Number of alignments=547 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 5 :APPVITPRGTKIEPSAG 1w3oA 50 :AFPFITPLAYAYRPEQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=4556 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4556 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)P11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)M181 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVIT 1w3oA -19 :YYHHHHHH T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATLW T0506 48 :V 1w3oA 44 :Q T0506 49 :SGY 1w3oA 47 :DGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PKAKL 1w3oA 141 :PGLKV T0506 137 :LSL 1w3oA 146 :GET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNA 1w3oA 176 :WAEQA T0506 165 :ITPADLRT 1w3oA 181 :IQEEDWPA T0506 175 :SGAEEL 1w3oA 189 :LGPEWL Number of specific fragments extracted= 13 number of extra gaps= 1 total=4569 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_423043291.pdb -s /var/tmp/to_scwrl_423043291.seq -o /var/tmp/from_scwrl_423043291.pdb > /var/tmp/scwrl_423043291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_423043291.pdb Number of alignments=548 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)P11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T172 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVIT 1w3oA -19 :YYHHHHHH T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 164 :NITPADLR 1w3oA 187 :PALGPEWL Number of specific fragments extracted= 10 number of extra gaps= 1 total=4579 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1358715711.pdb -s /var/tmp/to_scwrl_1358715711.seq -o /var/tmp/from_scwrl_1358715711.pdb > /var/tmp/scwrl_1358715711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358715711.pdb Number of alignments=549 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)P11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)G221 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVIT 1w3oA -19 :YYHHHHHH T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKL 1w3oA 146 :GET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 208 :KTGRWKITSIDPD 1w3oA 182 :QEEDWPALGPEWL Number of specific fragments extracted= 12 number of extra gaps= 1 total=4591 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1205321328.pdb -s /var/tmp/to_scwrl_1205321328.seq -o /var/tmp/from_scwrl_1205321328.pdb > /var/tmp/scwrl_1205321328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1205321328.pdb Number of alignments=550 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)T10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T172 because last residue in template chain is (1w3oA)G195 T0506 11 :PRGTK 1w3oA 3 :DFYDP T0506 16 :IEP 1w3oA 10 :RDP T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 164 :N 1w3oA 186 :W T0506 165 :ITPADLR 1w3oA 188 :ALGPEWL Number of specific fragments extracted= 14 number of extra gaps= 1 total=4605 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1723288813.pdb -s /var/tmp/to_scwrl_1723288813.seq -o /var/tmp/from_scwrl_1723288813.pdb > /var/tmp/scwrl_1723288813.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1723288813.pdb Number of alignments=551 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)T10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T172 because last residue in template chain is (1w3oA)G195 T0506 11 :PRGTK 1w3oA 3 :DFYDP T0506 16 :IEP 1w3oA 10 :RDP T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIAR 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSER T0506 130 :YPK 1w3oA 140 :FPG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 164 :NITPADLR 1w3oA 187 :PALGPEWL Number of specific fragments extracted= 13 number of extra gaps= 1 total=4618 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1593962976.pdb -s /var/tmp/to_scwrl_1593962976.seq -o /var/tmp/from_scwrl_1593962976.pdb > /var/tmp/scwrl_1593962976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593962976.pdb Number of alignments=552 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T172 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 165 :ITPADLR 1w3oA 188 :ALGPEWL Number of specific fragments extracted= 12 number of extra gaps= 1 total=4630 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1556189509.pdb -s /var/tmp/to_scwrl_1556189509.seq -o /var/tmp/from_scwrl_1556189509.pdb > /var/tmp/scwrl_1556189509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1556189509.pdb Number of alignments=553 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)T10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T172 because last residue in template chain is (1w3oA)G195 T0506 11 :PRGTK 1w3oA 3 :DFYDP T0506 16 :IEP 1w3oA 10 :RDP T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLY 1w3oA 146 :GETT T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 164 :NITPADLR 1w3oA 187 :PALGPEWL Number of specific fragments extracted= 13 number of extra gaps= 1 total=4643 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1518782987.pdb -s /var/tmp/to_scwrl_1518782987.seq -o /var/tmp/from_scwrl_1518782987.pdb > /var/tmp/scwrl_1518782987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518782987.pdb Number of alignments=554 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)P11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T189 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVIT 1w3oA -19 :YYHHHHHH T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEPD 1w3oA 52 :PFITPLAYAYRPE T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 66 :GDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKL 1w3oA 146 :GET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNASN 1w3oA 176 :WAEQAIQ T0506 177 :AEELMAAAESEA 1w3oA 183 :EEDWPALGPEWL Number of specific fragments extracted= 12 number of extra gaps= 1 total=4655 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_795670303.pdb -s /var/tmp/to_scwrl_795670303.seq -o /var/tmp/from_scwrl_795670303.pdb > /var/tmp/scwrl_795670303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_795670303.pdb Number of alignments=555 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T172 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEPD 1w3oA 52 :PFITPLAYAYRPE T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 66 :GDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 164 :N 1w3oA 186 :W T0506 165 :ITPADLR 1w3oA 188 :ALGPEWL Number of specific fragments extracted= 13 number of extra gaps= 1 total=4668 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1534255835.pdb -s /var/tmp/to_scwrl_1534255835.seq -o /var/tmp/from_scwrl_1534255835.pdb > /var/tmp/scwrl_1534255835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1534255835.pdb Number of alignments=556 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)A182 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEAV 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEWI T0506 31 :RDVLHTSRTAALATL 1w3oA 28 :RELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEPD 1w3oA 52 :PFITPLAYAYRPE T0506 65 :GTPFFFAAGLT 1w3oA 66 :GDLVYHTNVVG T0506 84 :DA 1w3oA 81 :NA T0506 86 :RISVTLAP 1w3oA 87 :PATLEVSE T0506 94 :FGKGDALTLPR 1w3oA 99 :LPSNSPLELSV T0506 105 :LTLVGRADRIGPDEVPLAIARYIARY 1w3oA 114 :VMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 164 :N 1w3oA 186 :W T0506 175 :SGAEELM 1w3oA 188 :ALGPEWL Number of specific fragments extracted= 16 number of extra gaps= 1 total=4684 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1315457844.pdb -s /var/tmp/to_scwrl_1315457844.seq -o /var/tmp/from_scwrl_1315457844.pdb > /var/tmp/scwrl_1315457844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1315457844.pdb Number of alignments=557 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)T172 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI T0506 164 :N 1w3oA 186 :W T0506 165 :ITPADLR 1w3oA 188 :ALGPEWL Number of specific fragments extracted= 13 number of extra gaps= 1 total=4697 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1833733206.pdb -s /var/tmp/to_scwrl_1833733206.seq -o /var/tmp/from_scwrl_1833733206.pdb > /var/tmp/scwrl_1833733206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1833733206.pdb Number of alignments=558 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)G221 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVITPR 1w3oA 3 :DFYDPRERDP T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PKAK 1w3oA 141 :PGLK T0506 136 :YLSL 1w3oA 145 :VGET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNA 1w3oA 176 :WAEQA T0506 207 :AKTGRWKITSIDPD 1w3oA 181 :IQEEDWPALGPEWL Number of specific fragments extracted= 12 number of extra gaps= 1 total=4709 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_940793072.pdb -s /var/tmp/to_scwrl_940793072.seq -o /var/tmp/from_scwrl_940793072.pdb > /var/tmp/scwrl_940793072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_940793072.pdb Number of alignments=559 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAP 1w3oA 3 :DFYDPRERDPSVSRRPQNRQS T0506 27 :VRVARDVLHTSRTAALATLD 1w3oA 24 :DEWIRELLLRGTIARVATLW T0506 48 :V 1w3oA 44 :Q T0506 49 :SGY 1w3oA 47 :DGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PKAKL 1w3oA 141 :PGLKV T0506 137 :LSL 1w3oA 146 :GET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNA 1w3oA 176 :WAEQA T0506 165 :IT 1w3oA 181 :IQ Number of specific fragments extracted= 12 number of extra gaps= 1 total=4721 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_706496103.pdb -s /var/tmp/to_scwrl_706496103.seq -o /var/tmp/from_scwrl_706496103.pdb > /var/tmp/scwrl_706496103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_706496103.pdb Number of alignments=560 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK Number of specific fragments extracted= 8 number of extra gaps= 1 total=4729 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1866498198.pdb -s /var/tmp/to_scwrl_1866498198.seq -o /var/tmp/from_scwrl_1866498198.pdb > /var/tmp/scwrl_1866498198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1866498198.pdb Number of alignments=561 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 9 :I 1w3oA 9 :E T0506 16 :IEP 1w3oA 10 :RDP T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKL 1w3oA 146 :GET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PAR 1w3oA 176 :WAE Number of specific fragments extracted= 12 number of extra gaps= 1 total=4741 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1608716902.pdb -s /var/tmp/to_scwrl_1608716902.seq -o /var/tmp/from_scwrl_1608716902.pdb > /var/tmp/scwrl_1608716902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1608716902.pdb Number of alignments=562 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 5 :APPVITPR 1w3oA 5 :YDPRERDP T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PA 1w3oA 176 :WA Number of specific fragments extracted= 11 number of extra gaps= 1 total=4752 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1853718207.pdb -s /var/tmp/to_scwrl_1853718207.seq -o /var/tmp/from_scwrl_1853718207.pdb > /var/tmp/scwrl_1853718207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1853718207.pdb Number of alignments=563 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIAR 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSER T0506 130 :YPK 1w3oA 140 :FPG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK Number of specific fragments extracted= 10 number of extra gaps= 1 total=4762 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1267931709.pdb -s /var/tmp/to_scwrl_1267931709.seq -o /var/tmp/from_scwrl_1267931709.pdb > /var/tmp/scwrl_1267931709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267931709.pdb Number of alignments=564 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PAR 1w3oA 176 :WAE Number of specific fragments extracted= 11 number of extra gaps= 1 total=4773 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2044631444.pdb -s /var/tmp/to_scwrl_2044631444.seq -o /var/tmp/from_scwrl_2044631444.pdb > /var/tmp/scwrl_2044631444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2044631444.pdb Number of alignments=565 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 5 :APPVITPRGTK 1w3oA 5 :YDPRERDPSVS T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLY 1w3oA 146 :GETT T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNA 1w3oA 176 :WAEQA Number of specific fragments extracted= 11 number of extra gaps= 1 total=4784 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1482525849.pdb -s /var/tmp/to_scwrl_1482525849.seq -o /var/tmp/from_scwrl_1482525849.pdb > /var/tmp/scwrl_1482525849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482525849.pdb Number of alignments=566 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEPD 1w3oA 52 :PFITPLAYAYRPE T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 66 :GDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKL 1w3oA 146 :GET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PA 1w3oA 176 :WA Number of specific fragments extracted= 11 number of extra gaps= 1 total=4795 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1037710055.pdb -s /var/tmp/to_scwrl_1037710055.seq -o /var/tmp/from_scwrl_1037710055.pdb > /var/tmp/scwrl_1037710055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1037710055.pdb Number of alignments=567 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEPD 1w3oA 52 :PFITPLAYAYRPE T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 66 :GDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI Number of specific fragments extracted= 11 number of extra gaps= 1 total=4806 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1903899442.pdb -s /var/tmp/to_scwrl_1903899442.seq -o /var/tmp/from_scwrl_1903899442.pdb > /var/tmp/scwrl_1903899442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903899442.pdb Number of alignments=568 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEAV 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEWI T0506 31 :RDVLHTSRTAALATL 1w3oA 28 :RELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEPD 1w3oA 52 :PFITPLAYAYRPE T0506 65 :GTPFFFAAGLT 1w3oA 66 :GDLVYHTNVVG T0506 84 :DA 1w3oA 81 :NA T0506 86 :RISVTLAP 1w3oA 87 :PATLEVSE T0506 94 :FGKGDALTLPR 1w3oA 99 :LPSNSPLELSV T0506 105 :LTLVGRADRIGPDEVPLAIARYIARY 1w3oA 114 :VMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI Number of specific fragments extracted= 14 number of extra gaps= 1 total=4820 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_568466955.pdb -s /var/tmp/to_scwrl_568466955.seq -o /var/tmp/from_scwrl_568466955.pdb > /var/tmp/scwrl_568466955.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_568466955.pdb Number of alignments=569 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PK 1w3oA 141 :PG T0506 133 :AKLYLSL 1w3oA 146 :GETTRPI T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PARNA 1w3oA 176 :WAEQA Number of specific fragments extracted= 11 number of extra gaps= 1 total=4831 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_997633792.pdb -s /var/tmp/to_scwrl_997633792.seq -o /var/tmp/from_scwrl_997633792.pdb > /var/tmp/scwrl_997633792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_997633792.pdb Number of alignments=570 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEA 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEW T0506 30 :ARDVLHTSRTAALATL 1w3oA 27 :IRELLLRGTIARVATL T0506 46 :D 1w3oA 45 :G T0506 48 :VSGY 1w3oA 46 :EDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSE T0506 94 :FGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 1w3oA 103 :SPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERV T0506 131 :PKAK 1w3oA 141 :PGLK T0506 136 :YLSL 1w3oA 145 :VGET T0506 140 :PDTRLYRLRTEGVQIN 1w3oA 158 :KRTSVYSLSIDRWSGK T0506 158 :PAR 1w3oA 176 :WAE Number of specific fragments extracted= 11 number of extra gaps= 1 total=4842 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2127154409.pdb -s /var/tmp/to_scwrl_2127154409.seq -o /var/tmp/from_scwrl_2127154409.pdb > /var/tmp/scwrl_2127154409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2127154409.pdb Number of alignments=571 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)A162 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPV 1w3oA -19 :YYHHHH T0506 9 :ITPRGTKIEPSAGAPFEAV 1w3oA 3 :DFYDPRERDPSVSRRPQNR T0506 28 :RVARDVLHTSRTAALATLD 1w3oA 25 :EWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIAR 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSER T0506 130 :YPKAKLYLS 1w3oA 140 :FPGLKVGET T0506 139 :LPDTRLYRLRTEG 1w3oA 157 :LKRTSVYSLSIDR T0506 157 :GPAR 1w3oA 170 :WSGK T0506 163 :SNIT 1w3oA 176 :WAEQ T0506 229 :DLARLWFAERVETLK 1w3oA 180 :AIQEEDWPALGPEWL Number of specific fragments extracted= 11 number of extra gaps= 1 total=4853 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_404113281.pdb -s /var/tmp/to_scwrl_404113281.seq -o /var/tmp/from_scwrl_404113281.pdb > /var/tmp/scwrl_404113281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_404113281.pdb Number of alignments=572 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)P11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w3oA)S2 Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)A162 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)G221 because last residue in template chain is (1w3oA)G195 T0506 3 :DVAPPVIT 1w3oA -19 :YYHHHHHH T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 13 :SVSRRPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDE 1w3oA 107 :LSVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQINGGPAR 1w3oA 152 :ISEDDLKRTSVYSLSIDRWSGK T0506 163 :S 1w3oA 176 :W T0506 203 :VLAGAKTGRWKITSIDPD 1w3oA 177 :AEQAIQEEDWPALGPEWL Number of specific fragments extracted= 9 number of extra gaps= 1 total=4862 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_550817191.pdb -s /var/tmp/to_scwrl_550817191.seq -o /var/tmp/from_scwrl_550817191.pdb > /var/tmp/scwrl_550817191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_550817191.pdb Number of alignments=573 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)R200 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)L201 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)G221 because last residue in template chain is (1w3oA)G195 T0506 9 :ITPRGTKIEPS 1w3oA 3 :DFYDPRERDPS T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 17 :RPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 99 :ALTLPRLTLVGRADRIGPDE 1w3oA 108 :SVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQINGGPAR 1w3oA 152 :ISEDDLKRTSVYSLSIDRWSGK T0506 202 :AVLAGAKTGRWKITSIDPD 1w3oA 176 :WAEQAIQEEDWPALGPEWL Number of specific fragments extracted= 8 number of extra gaps= 1 total=4870 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1704359843.pdb -s /var/tmp/to_scwrl_1704359843.seq -o /var/tmp/from_scwrl_1704359843.pdb > /var/tmp/scwrl_1704359843.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704359843.pdb Number of alignments=574 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)E178 because last residue in template chain is (1w3oA)G195 T0506 9 :ITPRGTKIEPS 1w3oA 3 :DFYDPRERDPS T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 17 :RPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 99 :ALTLPRLTLVGRADRIGPDE 1w3oA 108 :SVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNASNIT 1w3oA 176 :WAEQAIQEE T0506 168 :ADLRTDLSGA 1w3oA 185 :DWPALGPEWL Number of specific fragments extracted= 9 number of extra gaps= 1 total=4879 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_944731812.pdb -s /var/tmp/to_scwrl_944731812.seq -o /var/tmp/from_scwrl_944731812.pdb > /var/tmp/scwrl_944731812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944731812.pdb Number of alignments=575 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)E178 because last residue in template chain is (1w3oA)G195 T0506 9 :ITPRGTKIEPSAGAPF 1w3oA 3 :DFYDPRERDPSVSRRP T0506 25 :EAVRVARDVLHTSRTAALATLD 1w3oA 22 :QSDEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTL 1w3oA 103 :SPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAK 1w3oA 129 :RAALTTLSERVFPGLK T0506 135 :LYLSLPDTRLYRLRTEGVQIN 1w3oA 153 :SEDDLKRTSVYSLSIDRWSGK T0506 158 :PARN 1w3oA 176 :WAEQ T0506 163 :SNITPADLRTDLSGA 1w3oA 180 :AIQEEDWPALGPEWL Number of specific fragments extracted= 11 number of extra gaps= 1 total=4890 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_561129113.pdb -s /var/tmp/to_scwrl_561129113.seq -o /var/tmp/from_scwrl_561129113.pdb > /var/tmp/scwrl_561129113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561129113.pdb Number of alignments=576 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 9 :ITPRGTKIEPSAGAPFE 1w3oA 3 :DFYDPRERDPSVSRRPQ T0506 26 :AVRVARDVLHTSRTAALATLD 1w3oA 23 :SDEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 75 :TLHARNMETDARISVTLAPFG 1w3oA 76 :GRLRANAGQGHPATLEVSEIG T0506 98 :DALTL 1w3oA 103 :SPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNASNITP 1w3oA 176 :WAEQAIQEED T0506 172 :TDLSGAEE 1w3oA 186 :WPALGPEW T0506 253 :LK 1w3oA 194 :LG Number of specific fragments extracted= 12 number of extra gaps= 1 total=4902 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_261361321.pdb -s /var/tmp/to_scwrl_261361321.seq -o /var/tmp/from_scwrl_261361321.pdb > /var/tmp/scwrl_261361321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_261361321.pdb Number of alignments=577 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 9 :ITPRGTKIEPS 1w3oA 3 :DFYDPRERDPS T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 17 :RPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIG T0506 99 :ALTLPRLTLVGRADRIGPDE 1w3oA 108 :SVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNASN 1w3oA 176 :WAEQAIQ T0506 166 :TPADLRTDLSGA 1w3oA 183 :EEDWPALGPEWL Number of specific fragments extracted= 9 number of extra gaps= 1 total=4911 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_976243524.pdb -s /var/tmp/to_scwrl_976243524.seq -o /var/tmp/from_scwrl_976243524.pdb > /var/tmp/scwrl_976243524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976243524.pdb Number of alignments=578 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)A162 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)E178 because last residue in template chain is (1w3oA)G195 T0506 9 :ITPRGTKIEPSAGAPFEAV 1w3oA 3 :DFYDPRERDPSVSRRPQNR T0506 28 :RVARDVLHTSRTAALATLD 1w3oA 25 :EWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 99 :ALTLPRLTLVGRADRIGPDEVPLAIARYIAR 1w3oA 108 :SVQYRSVMVFGTARVLAGEDARAALTTLSER T0506 130 :YPKAKLYLS 1w3oA 140 :FPGLKVGET T0506 139 :LPDTRLYRLRTEGVQ 1w3oA 157 :LKRTSVYSLSIDRWS T0506 159 :AR 1w3oA 172 :GK T0506 163 :SNITP 1w3oA 176 :WAEQA T0506 168 :ADLRTDLSGA 1w3oA 185 :DWPALGPEWL Number of specific fragments extracted= 10 number of extra gaps= 1 total=4921 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_984172405.pdb -s /var/tmp/to_scwrl_984172405.seq -o /var/tmp/from_scwrl_984172405.pdb > /var/tmp/scwrl_984172405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984172405.pdb Number of alignments=579 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because first residue in template chain is (1w3oA)S-20 Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 9 :ITPRGTKIEPSAGAPFE 1w3oA 3 :DFYDPRERDPSVSRRPQ T0506 26 :AVRVARDVLHTSRTAALATLD 1w3oA 23 :SDEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 76 :LHARNMETDARISVTLAPFG 1w3oA 77 :RLRANAGQGHPATLEVSEIG T0506 96 :KGDALTL 1w3oA 101 :SNSPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNASNITP 1w3oA 176 :WAEQAIQEED T0506 172 :TDLSGAEE 1w3oA 186 :WPALGPEW T0506 253 :LK 1w3oA 194 :LG Number of specific fragments extracted= 12 number of extra gaps= 1 total=4933 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1620077032.pdb -s /var/tmp/to_scwrl_1620077032.seq -o /var/tmp/from_scwrl_1620077032.pdb > /var/tmp/scwrl_1620077032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1620077032.pdb Number of alignments=580 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEAVR 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEWIR T0506 32 :DVLHTSRTAALATLD 1w3oA 29 :ELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 82 :ETDA 1w3oA 79 :RANA T0506 86 :RISVTLAPFG 1w3oA 87 :PATLEVSEIG T0506 96 :KGDALTLP 1w3oA 101 :SNSPLELS T0506 104 :RLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 1w3oA 113 :SVMVFGTARVLAGEDARAALTTLSERVFPGLKVGE T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNASNITP 1w3oA 176 :WAEQAIQEED T0506 172 :TDLSGAEE 1w3oA 186 :WPALGPEW T0506 253 :LK 1w3oA 194 :LG Number of specific fragments extracted= 12 number of extra gaps= 1 total=4945 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_34081205.pdb -s /var/tmp/to_scwrl_34081205.seq -o /var/tmp/from_scwrl_34081205.pdb > /var/tmp/scwrl_34081205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34081205.pdb Number of alignments=581 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 9 :ITPRGTKIEPSAGAPF 1w3oA 3 :DFYDPRERDPSVSRRP T0506 25 :EAVRVARDVLHTSRTAALATLD 1w3oA 22 :QSDEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 75 :TLHARNMETDARISVTLAPFG 1w3oA 76 :GRLRANAGQGHPATLEVSEIG T0506 96 :KGDALTL 1w3oA 101 :SNSPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNASNITP 1w3oA 176 :WAEQAIQEED T0506 172 :TDLSGAEEL 1w3oA 186 :WPALGPEWL Number of specific fragments extracted= 11 number of extra gaps= 1 total=4956 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_559977571.pdb -s /var/tmp/to_scwrl_559977571.seq -o /var/tmp/from_scwrl_559977571.pdb > /var/tmp/scwrl_559977571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559977571.pdb Number of alignments=582 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 Warning: unaligning (T0506)E178 because last residue in template chain is (1w3oA)G195 T0506 9 :ITPRGTKIEPS 1w3oA 3 :DFYDPRERDPS T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 17 :RPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGL 1w3oA 47 :DGAAFPFITPLAYAYRPEQGDLVYHTNV T0506 75 :TLHARNMETDARISVTLAPFG 1w3oA 76 :GRLRANAGQGHPATLEVSEIG T0506 96 :KGDALTL 1w3oA 101 :SNSPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNA 1w3oA 176 :WAEQA T0506 164 :NITPADLRTDLSGA 1w3oA 181 :IQEEDWPALGPEWL Number of specific fragments extracted= 10 number of extra gaps= 1 total=4966 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1066556362.pdb -s /var/tmp/to_scwrl_1066556362.seq -o /var/tmp/from_scwrl_1066556362.pdb > /var/tmp/scwrl_1066556362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066556362.pdb Number of alignments=583 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)P6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 T0506 7 :PVITPRGTKIEP 1w3oA 3 :DFYDPRERDPSV T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 16 :RRPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIAR 1w3oA 107 :LSVQYRSVMVFGTARVLAGEDARAALTTLSER T0506 130 :YPKAK 1w3oA 140 :FPGLK Number of specific fragments extracted= 6 number of extra gaps= 0 total=4972 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1590270714.pdb -s /var/tmp/to_scwrl_1590270714.seq -o /var/tmp/from_scwrl_1590270714.pdb > /var/tmp/scwrl_1590270714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590270714.pdb Number of alignments=584 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 17 :RPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTLPRLTLVGRADRIGPDE 1w3oA 107 :LSVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAK 1w3oA 129 :RAALTTLSERVFPGLK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4977 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2078760558.pdb -s /var/tmp/to_scwrl_2078760558.seq -o /var/tmp/from_scwrl_2078760558.pdb > /var/tmp/scwrl_2078760558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2078760558.pdb Number of alignments=585 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 15 :SRRPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 99 :ALTLPRLTLVGRADRIGPDE 1w3oA 108 :SVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAK 1w3oA 129 :RAALTTLSERVFPGLK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4982 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1862226664.pdb -s /var/tmp/to_scwrl_1862226664.seq -o /var/tmp/from_scwrl_1862226664.pdb > /var/tmp/scwrl_1862226664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1862226664.pdb Number of alignments=586 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 15 :KIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 12 :PSVSRRPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 99 :ALTLPRLTLVGRADRIGPDE 1w3oA 108 :SVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARNAS 1w3oA 176 :WAEQAI Number of specific fragments extracted= 7 number of extra gaps= 1 total=4989 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_977042903.pdb -s /var/tmp/to_scwrl_977042903.seq -o /var/tmp/from_scwrl_977042903.pdb > /var/tmp/scwrl_977042903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_977042903.pdb Number of alignments=587 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 27 :VRVARDVLHTSRTAALATLD 1w3oA 24 :DEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEP 1w3oA 52 :PFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 98 :DALTL 1w3oA 103 :SPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAK 1w3oA 129 :RAALTTLSERVFPGLK Number of specific fragments extracted= 7 number of extra gaps= 0 total=4996 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1246734755.pdb -s /var/tmp/to_scwrl_1246734755.seq -o /var/tmp/from_scwrl_1246734755.pdb > /var/tmp/scwrl_1246734755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246734755.pdb Number of alignments=588 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 5 :YDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 75 :TLHARNMETDARISVTLAPFG 1w3oA 76 :GRLRANAGQGHPATLEVSEIG T0506 98 :DALTL 1w3oA 103 :SPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET Number of specific fragments extracted= 7 number of extra gaps= 0 total=5003 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1548476224.pdb -s /var/tmp/to_scwrl_1548476224.seq -o /var/tmp/from_scwrl_1548476224.pdb > /var/tmp/scwrl_1548476224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1548476224.pdb Number of alignments=589 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 12 :RGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 9 :ERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIG T0506 99 :ALTLPRLTLVGRADRIGPDE 1w3oA 108 :SVQYRSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQ 1w3oA 157 :LKRTSVYSLSIDRWS Number of specific fragments extracted= 6 number of extra gaps= 0 total=5009 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1917835975.pdb -s /var/tmp/to_scwrl_1917835975.seq -o /var/tmp/from_scwrl_1917835975.pdb > /var/tmp/scwrl_1917835975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1917835975.pdb Number of alignments=590 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 9 :ITPRGTKIEPSAGAPFEAV 1w3oA 3 :DFYDPRERDPSVSRRPQNR T0506 28 :RVARDVLHTSRTAALATLD 1w3oA 25 :EWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEP 1w3oA 47 :DGAAFPFITPLAYAYRP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w3oA 65 :QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQF T0506 99 :ALTLPRLTLVGRADRIGPDEVPLAIARYIAR 1w3oA 108 :SVQYRSVMVFGTARVLAGEDARAALTTLSER Number of specific fragments extracted= 5 number of extra gaps= 0 total=5014 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1953230858.pdb -s /var/tmp/to_scwrl_1953230858.seq -o /var/tmp/from_scwrl_1953230858.pdb > /var/tmp/scwrl_1953230858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1953230858.pdb Number of alignments=591 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 T0506 9 :ITPRGTKIEPSAGAPFE 1w3oA 3 :DFYDPRERDPSVSRRPQ T0506 26 :AVRVARDVLHTSRTAALATLD 1w3oA 23 :SDEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 76 :LHARNMETDARISVTLAPFG 1w3oA 77 :RLRANAGQGHPATLEVSEIG T0506 96 :KGDALTL 1w3oA 101 :SNSPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK Number of specific fragments extracted= 9 number of extra gaps= 1 total=5023 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1267490775.pdb -s /var/tmp/to_scwrl_1267490775.seq -o /var/tmp/from_scwrl_1267490775.pdb > /var/tmp/scwrl_1267490775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267490775.pdb Number of alignments=592 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)L2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 3 :DVAPPVITPRGTKIEPSAGAPFEAVR 1w3oA 3 :DFYDPRERDPSVSRRPQNRQSDEWIR T0506 32 :DVLHTSRTAALATLD 1w3oA 29 :ELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 82 :ETDA 1w3oA 79 :RANA T0506 86 :RISVTLAPFG 1w3oA 87 :PATLEVSEIG T0506 96 :KGDALTLP 1w3oA 101 :SNSPLELS T0506 104 :RLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 1w3oA 113 :SVMVFGTARVLAGEDARAALTTLSERVFPGLKVGE T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK Number of specific fragments extracted= 9 number of extra gaps= 1 total=5032 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1379069230.pdb -s /var/tmp/to_scwrl_1379069230.seq -o /var/tmp/from_scwrl_1379069230.pdb > /var/tmp/scwrl_1379069230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1379069230.pdb Number of alignments=593 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w3oA)S2 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1w3oA)N175 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1w3oA)N175 T0506 9 :ITPRGTKIEPSAGAPF 1w3oA 3 :DFYDPRERDPSVSRRP T0506 25 :EAVRVARDVLHTSRTAALATLD 1w3oA 22 :QSDEWIRELLLRGTIARVATLW T0506 47 :PVSGY 1w3oA 45 :GEDGA T0506 52 :PYTTATNIGIEPDGTPFFFAAGL 1w3oA 52 :PFITPLAYAYRPEQGDLVYHTNV T0506 75 :TLHARNMETDARISVTLAPFG 1w3oA 76 :GRLRANAGQGHPATLEVSEIG T0506 96 :KGDALTL 1w3oA 101 :SNSPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYLS 1w3oA 129 :RAALTTLSERVFPGLKVGET T0506 139 :LPDTRLYRLRTEGVQIN 1w3oA 157 :LKRTSVYSLSIDRWSGK T0506 158 :PARN 1w3oA 176 :WAEQ Number of specific fragments extracted= 10 number of extra gaps= 1 total=5042 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1659465418.pdb -s /var/tmp/to_scwrl_1659465418.seq -o /var/tmp/from_scwrl_1659465418.pdb > /var/tmp/scwrl_1659465418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659465418.pdb Number of alignments=594 # 1w3oA read from all-align.a2m # found chain 1w3oA in training set T0506 8 :VITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 1w3oA 5 :YDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLW T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGL 1w3oA 47 :DGAAFPFITPLAYAYRPEQGDLVYHTNV T0506 75 :TLHARNMETDARISVTLAPFG 1w3oA 76 :GRLRANAGQGHPATLEVSEIG T0506 96 :KGDALTL 1w3oA 101 :SNSPLEL T0506 103 :PRLTLVGRADRIGPDE 1w3oA 112 :RSVMVFGTARVLAGED T0506 119 :VPLAIARYIARYPKAKLYL 1w3oA 129 :RAALTTLSERVFPGLKVGE Number of specific fragments extracted= 6 number of extra gaps= 0 total=5048 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_387938839.pdb -s /var/tmp/to_scwrl_387938839.seq -o /var/tmp/from_scwrl_387938839.pdb > /var/tmp/scwrl_387938839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387938839.pdb Number of alignments=595 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)I9 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)L230 because last residue in template chain is (1w9aA)R147 T0506 10 :TPR 1w9aA 7 :DDK T0506 30 :ARDVLHTSRTAALATLDP 1w9aA 10 :LLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLT 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSIAEP T0506 76 :LHARNMETDARISVTLAPFGK 1w9aA 56 :AKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPDEVPL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPD T0506 122 :AIARYIARYPKAKLYLS 1w9aA 99 :TVEALIALYRNIAGEHS T0506 199 :SRLAVLAGAKTGRWKITSIDPDGIDLASASD 1w9aA 116 :DWDDYRQAMVTDRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5055 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1276217027.pdb -s /var/tmp/to_scwrl_1276217027.seq -o /var/tmp/from_scwrl_1276217027.pdb > /var/tmp/scwrl_1276217027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276217027.pdb Number of alignments=596 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)L230 because last residue in template chain is (1w9aA)R147 T0506 30 :ARDVLHTSRTAALATLDP 1w9aA 10 :LLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLT 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSIAEP T0506 76 :LHARNMETDARISVTLAPFGK 1w9aA 56 :AKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPDEVPL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPD T0506 122 :AIARYIARYPKAKLYLS 1w9aA 99 :TVEALIALYRNIAGEHS T0506 199 :SRLAVLAGAKTGRWKITSIDPDGIDLASASD 1w9aA 116 :DWDDYRQAMVTDRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 6 number of extra gaps= 0 total=5061 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_994507622.pdb -s /var/tmp/to_scwrl_994507622.seq -o /var/tmp/from_scwrl_994507622.pdb > /var/tmp/scwrl_994507622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994507622.pdb Number of alignments=597 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 30 :ARDVLHTSRTAALATLDP 1w9aA 10 :LLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLT 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSIAEP T0506 76 :LHARNMETDARISVTLAPFGK 1w9aA 56 :AKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPDEVPL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPD T0506 122 :AIARYIARYP 1w9aA 99 :TVEALIALYR T0506 132 :KAKLYLSLPDTRLYRLRTEGVQINGG 1w9aA 119 :DYRQAMVTDRRVLLTLPISHVYGLPP Number of specific fragments extracted= 6 number of extra gaps= 0 total=5067 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1425648893.pdb -s /var/tmp/to_scwrl_1425648893.seq -o /var/tmp/from_scwrl_1425648893.pdb > /var/tmp/scwrl_1425648893.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1425648893.pdb Number of alignments=598 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 31 :RDVLHTSRTAALATLDP 1w9aA 11 :LAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLT 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSIAEP T0506 76 :LHARNMETDARISVTLAPFGK 1w9aA 56 :AKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPDEVPL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPD T0506 122 :AIARYIARYP 1w9aA 99 :TVEALIALYR T0506 132 :KAKLYLSLPDTRLYRLRTEGVQINGGP 1w9aA 119 :DYRQAMVTDRRVLLTLPISHVYGLPPG Number of specific fragments extracted= 6 number of extra gaps= 0 total=5073 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1032632823.pdb -s /var/tmp/to_scwrl_1032632823.seq -o /var/tmp/from_scwrl_1032632823.pdb > /var/tmp/scwrl_1032632823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1032632823.pdb Number of alignments=599 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A26 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 27 :VRVARDVLHTSRTAALATLDP 1w9aA 7 :DDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPF 1w9aA 28 :DGRPQLSNVQYHFDPRKLLI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKGD 1w9aA 49 :VSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPDEVP 1w9aA 79 :YAVAEGTAQLTPPAAAP T0506 121 :LAIARYIARY 1w9aA 98 :DTVEALIALY T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQINGGPA 1w9aA 118 :DDYRQAMVTDRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 6 number of extra gaps= 0 total=5079 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1562974576.pdb -s /var/tmp/to_scwrl_1562974576.seq -o /var/tmp/from_scwrl_1562974576.pdb > /var/tmp/scwrl_1562974576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562974576.pdb Number of alignments=600 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 30 :ARDVLHTSRTAALATLDP 1w9aA 10 :LLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPF 1w9aA 28 :DGRPQLSNVQYHFDPRKLLI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKGD 1w9aA 49 :VSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPDEVPLAI 1w9aA 79 :YAVAEGTAQLTPPAAAPDDD T0506 124 :ARYIARY 1w9aA 101 :EALIALY T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQINGGPA 1w9aA 118 :DDYRQAMVTDRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 6 number of extra gaps= 0 total=5085 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_275799038.pdb -s /var/tmp/to_scwrl_275799038.seq -o /var/tmp/from_scwrl_275799038.pdb > /var/tmp/scwrl_275799038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_275799038.pdb Number of alignments=601 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 31 :RDVLHTSRTAALATLDP 1w9aA 11 :LAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPF 1w9aA 28 :DGRPQLSNVQYHFDPRKLLI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKGD 1w9aA 49 :VSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPDEVP 1w9aA 79 :YAVAEGTAQLTPPAAAP T0506 121 :LAIARYIARY 1w9aA 98 :DTVEALIALY T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQI 1w9aA 118 :DDYRQAMVTDRRVLLTLPISHVYG Number of specific fragments extracted= 6 number of extra gaps= 0 total=5091 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1012303586.pdb -s /var/tmp/to_scwrl_1012303586.seq -o /var/tmp/from_scwrl_1012303586.pdb > /var/tmp/scwrl_1012303586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1012303586.pdb Number of alignments=602 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 31 :RDVLHTSRTAALATLDP 1w9aA 11 :LAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPF 1w9aA 28 :DGRPQLSNVQYHFDPRKLLI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKGD 1w9aA 49 :VSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPDEVPLAI 1w9aA 79 :YAVAEGTAQLTPPAAAPDDD T0506 124 :ARYIARY 1w9aA 101 :EALIALY T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQ 1w9aA 118 :DDYRQAMVTDRRVLLTLPISHVY Number of specific fragments extracted= 6 number of extra gaps= 0 total=5097 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1967087858.pdb -s /var/tmp/to_scwrl_1967087858.seq -o /var/tmp/from_scwrl_1967087858.pdb > /var/tmp/scwrl_1967087858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1967087858.pdb Number of alignments=603 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLY 1w9aA 54 :PRAKTRNLRRDPRASILVDADDGWSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=5098 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_826616229.pdb -s /var/tmp/to_scwrl_826616229.seq -o /var/tmp/from_scwrl_826616229.pdb > /var/tmp/scwrl_826616229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_826616229.pdb Number of alignments=604 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 123 :IARYIARYPKAKLYLSLPDTRLYR 1w9aA 57 :KTRNLRRDPRASILVDADDGWSYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5099 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_569179782.pdb -s /var/tmp/to_scwrl_569179782.seq -o /var/tmp/from_scwrl_569179782.pdb > /var/tmp/scwrl_569179782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_569179782.pdb Number of alignments=605 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDE 1w9aA 96 :DDD T0506 119 :VPLAIARYIA 1w9aA 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=5107 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_764336023.pdb -s /var/tmp/to_scwrl_764336023.seq -o /var/tmp/from_scwrl_764336023.pdb > /var/tmp/scwrl_764336023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764336023.pdb Number of alignments=606 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :R 1w9aA 7 :D T0506 29 :VARDVLHTSRTAALATLD 1w9aA 9 :KLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :P 1w9aA 98 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 1w9aA 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=5115 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1387745342.pdb -s /var/tmp/to_scwrl_1387745342.seq -o /var/tmp/from_scwrl_1387745342.pdb > /var/tmp/scwrl_1387745342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387745342.pdb Number of alignments=607 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :P 1w9aA 97 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 1w9aA 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5122 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_830541103.pdb -s /var/tmp/to_scwrl_830541103.seq -o /var/tmp/from_scwrl_830541103.pdb > /var/tmp/scwrl_830541103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_830541103.pdb Number of alignments=608 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)A159 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 1w9aA 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 1w9aA 127 :DRRVLLTLPISHVYGLP T0506 157 :GP 1w9aA 145 :GM Number of specific fragments extracted= 8 number of extra gaps= 0 total=5130 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1740579546.pdb -s /var/tmp/to_scwrl_1740579546.seq -o /var/tmp/from_scwrl_1740579546.pdb > /var/tmp/scwrl_1740579546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1740579546.pdb Number of alignments=609 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 1w9aA 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5137 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_224434100.pdb -s /var/tmp/to_scwrl_224434100.seq -o /var/tmp/from_scwrl_224434100.pdb > /var/tmp/scwrl_224434100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_224434100.pdb Number of alignments=610 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A26 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 27 :VRVARDVLHTSRTAALATLD 1w9aA 7 :DDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5144 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_303134489.pdb -s /var/tmp/to_scwrl_303134489.seq -o /var/tmp/from_scwrl_303134489.pdb > /var/tmp/scwrl_303134489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_303134489.pdb Number of alignments=611 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5151 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1774660751.pdb -s /var/tmp/to_scwrl_1774660751.seq -o /var/tmp/from_scwrl_1774660751.pdb > /var/tmp/scwrl_1774660751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1774660751.pdb Number of alignments=612 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5158 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_784411671.pdb -s /var/tmp/to_scwrl_784411671.seq -o /var/tmp/from_scwrl_784411671.pdb > /var/tmp/scwrl_784411671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784411671.pdb Number of alignments=613 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 96 :DDDTVEALIALYR T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5165 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1369690850.pdb -s /var/tmp/to_scwrl_1369690850.seq -o /var/tmp/from_scwrl_1369690850.pdb > /var/tmp/scwrl_1369690850.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1369690850.pdb Number of alignments=614 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P23 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 24 :F 1w9aA 7 :D T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :P 1w9aA 96 :D T0506 117 :DEVPLAIARYIAR 1w9aA 98 :DTVEALIALYRNI T0506 130 :YPKAKLYLSL 1w9aA 114 :HSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 9 number of extra gaps= 0 total=5174 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1217447818.pdb -s /var/tmp/to_scwrl_1217447818.seq -o /var/tmp/from_scwrl_1217447818.pdb > /var/tmp/scwrl_1217447818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1217447818.pdb Number of alignments=615 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDE 1w9aA 96 :DDD T0506 119 :VPLAIARYIA 1w9aA 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=5182 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_715688582.pdb -s /var/tmp/to_scwrl_715688582.seq -o /var/tmp/from_scwrl_715688582.pdb > /var/tmp/scwrl_715688582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715688582.pdb Number of alignments=616 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)V27 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R160 because last residue in template chain is (1w9aA)R147 T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 1w9aA 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5189 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1084433868.pdb -s /var/tmp/to_scwrl_1084433868.seq -o /var/tmp/from_scwrl_1084433868.pdb > /var/tmp/scwrl_1084433868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084433868.pdb Number of alignments=617 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDE 1w9aA 96 :DDD T0506 119 :VPLAIARYIA 1w9aA 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 8 number of extra gaps= 0 total=5197 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_47007075.pdb -s /var/tmp/to_scwrl_47007075.seq -o /var/tmp/from_scwrl_47007075.pdb > /var/tmp/scwrl_47007075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_47007075.pdb Number of alignments=618 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :P 1w9aA 98 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 1w9aA 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5204 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1962423337.pdb -s /var/tmp/to_scwrl_1962423337.seq -o /var/tmp/from_scwrl_1962423337.pdb > /var/tmp/scwrl_1962423337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1962423337.pdb Number of alignments=619 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :P 1w9aA 97 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 1w9aA 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5211 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_485426446.pdb -s /var/tmp/to_scwrl_485426446.seq -o /var/tmp/from_scwrl_485426446.pdb > /var/tmp/scwrl_485426446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485426446.pdb Number of alignments=620 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 1w9aA 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5218 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1964843050.pdb -s /var/tmp/to_scwrl_1964843050.seq -o /var/tmp/from_scwrl_1964843050.pdb > /var/tmp/scwrl_1964843050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964843050.pdb Number of alignments=621 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 1w9aA 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5225 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1768170548.pdb -s /var/tmp/to_scwrl_1768170548.seq -o /var/tmp/from_scwrl_1768170548.pdb > /var/tmp/scwrl_1768170548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1768170548.pdb Number of alignments=622 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5232 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1752917221.pdb -s /var/tmp/to_scwrl_1752917221.seq -o /var/tmp/from_scwrl_1752917221.pdb > /var/tmp/scwrl_1752917221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1752917221.pdb Number of alignments=623 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 1w9aA 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 7 number of extra gaps= 0 total=5239 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1196428633.pdb -s /var/tmp/to_scwrl_1196428633.seq -o /var/tmp/from_scwrl_1196428633.pdb > /var/tmp/scwrl_1196428633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196428633.pdb Number of alignments=624 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5246 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1280152320.pdb -s /var/tmp/to_scwrl_1280152320.seq -o /var/tmp/from_scwrl_1280152320.pdb > /var/tmp/scwrl_1280152320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280152320.pdb Number of alignments=625 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 96 :DDDTVEALIALYR T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 1w9aA 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 7 number of extra gaps= 0 total=5253 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2140856060.pdb -s /var/tmp/to_scwrl_2140856060.seq -o /var/tmp/from_scwrl_2140856060.pdb > /var/tmp/scwrl_2140856060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2140856060.pdb Number of alignments=626 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :P 1w9aA 96 :D T0506 117 :DEVPLAIARYIAR 1w9aA 98 :DTVEALIALYRNI T0506 130 :YPKAKLYLSL 1w9aA 114 :HSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 1w9aA 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 8 number of extra gaps= 0 total=5261 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_325162014.pdb -s /var/tmp/to_scwrl_325162014.seq -o /var/tmp/from_scwrl_325162014.pdb > /var/tmp/scwrl_325162014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_325162014.pdb Number of alignments=627 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDE 1w9aA 96 :DDD T0506 119 :VPLAIARYIA 1w9aA 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 1w9aA 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 8 number of extra gaps= 0 total=5269 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_127176295.pdb -s /var/tmp/to_scwrl_127176295.seq -o /var/tmp/from_scwrl_127176295.pdb > /var/tmp/scwrl_127176295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127176295.pdb Number of alignments=628 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 28 :RVARDVLHTSRTAALATLD 1w9aA 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 1w9aA 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 1w9aA 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 1w9aA 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 1w9aA 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 7 number of extra gaps= 0 total=5276 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1419021307.pdb -s /var/tmp/to_scwrl_1419021307.seq -o /var/tmp/from_scwrl_1419021307.pdb > /var/tmp/scwrl_1419021307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419021307.pdb Number of alignments=629 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P6 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)A250 because last residue in template chain is (1w9aA)R147 T0506 7 :PVITP 1w9aA 7 :DDKLL T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDT 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQA T0506 191 :L 1w9aA 124 :M T0506 226 :SAS 1w9aA 125 :VTD T0506 231 :ARLWFAERVETLKQFEKAL 1w9aA 128 :RRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=5284 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1357794836.pdb -s /var/tmp/to_scwrl_1357794836.seq -o /var/tmp/from_scwrl_1357794836.pdb > /var/tmp/scwrl_1357794836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1357794836.pdb Number of alignments=630 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A26 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)K213 because last residue in template chain is (1w9aA)R147 T0506 27 :VRVARDVLHTSRTAALATLDP 1w9aA 7 :DDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY T0506 188 :ATRLNAIKGEASRLAVLAGAK 1w9aA 121 :RQAMVTDRRVLLTLPISHVYG T0506 209 :TGRW 1w9aA 143 :PPGM Number of specific fragments extracted= 6 number of extra gaps= 0 total=5290 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1690150871.pdb -s /var/tmp/to_scwrl_1690150871.seq -o /var/tmp/from_scwrl_1690150871.pdb > /var/tmp/scwrl_1690150871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690150871.pdb Number of alignments=631 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P6 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)A250 because last residue in template chain is (1w9aA)R147 T0506 7 :PVITP 1w9aA 7 :DDKLL T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTR 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAM T0506 164 :NI 1w9aA 125 :VT T0506 194 :IKGEASRLAVLAGAK 1w9aA 127 :DRRVLLTLPISHVYG T0506 245 :FEKAL 1w9aA 142 :LPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=5298 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1694820345.pdb -s /var/tmp/to_scwrl_1694820345.seq -o /var/tmp/from_scwrl_1694820345.pdb > /var/tmp/scwrl_1694820345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1694820345.pdb Number of alignments=632 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P6 because first residue in template chain is (1w9aA)F6 T0506 7 :PV 1w9aA 7 :DD T0506 29 :VARDVLHTSRTAALATLDP 1w9aA 9 :KLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQING 1w9aA 126 :TDRRVLLTLPISHVYGLP T0506 174 :LS 1w9aA 144 :PG T0506 177 :A 1w9aA 146 :M Number of specific fragments extracted= 8 number of extra gaps= 0 total=5306 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_222614775.pdb -s /var/tmp/to_scwrl_222614775.seq -o /var/tmp/from_scwrl_222614775.pdb > /var/tmp/scwrl_222614775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_222614775.pdb Number of alignments=633 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P6 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)A225 because last residue in template chain is (1w9aA)R147 T0506 7 :P 1w9aA 7 :D T0506 28 :RVARDVLHTSRTAALATLDP 1w9aA 8 :DKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPDE 1w9aA 78 :SYAVAEGTAQLTPPAA T0506 119 :VPLAIARYIARYPKAKLYLS 1w9aA 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQING 1w9aA 126 :TDRRVLLTLPISHVYGLP T0506 222 :IDL 1w9aA 144 :PGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=5314 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1509755082.pdb -s /var/tmp/to_scwrl_1509755082.seq -o /var/tmp/from_scwrl_1509755082.pdb > /var/tmp/scwrl_1509755082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1509755082.pdb Number of alignments=634 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P6 because first residue in template chain is (1w9aA)F6 T0506 27 :VRVARDVLHTSRTAALATLDP 1w9aA 7 :DDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 1w9aA 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 1w9aA 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 1w9aA 126 :TDRRVLLTLPISHVYGLPP T0506 238 :RV 1w9aA 145 :GM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5321 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_373952928.pdb -s /var/tmp/to_scwrl_373952928.seq -o /var/tmp/from_scwrl_373952928.pdb > /var/tmp/scwrl_373952928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373952928.pdb Number of alignments=635 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P6 because first residue in template chain is (1w9aA)F6 T0506 7 :P 1w9aA 7 :D T0506 28 :RVARDVLHTSRTAALATLDP 1w9aA 8 :DKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 1w9aA 79 :YAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 1w9aA 126 :TDRRVLLTLPISHVYGLPP T0506 221 :GI 1w9aA 145 :GM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5328 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_791794557.pdb -s /var/tmp/to_scwrl_791794557.seq -o /var/tmp/from_scwrl_791794557.pdb > /var/tmp/scwrl_791794557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_791794557.pdb Number of alignments=636 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)P6 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)K213 because last residue in template chain is (1w9aA)R147 T0506 7 :PVITP 1w9aA 7 :DDKLL T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY T0506 188 :ATRLNAIKGEASRLAVLAGAK 1w9aA 121 :RQAMVTDRRVLLTLPISHVYG T0506 210 :GRW 1w9aA 144 :PGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5335 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_126607458.pdb -s /var/tmp/to_scwrl_126607458.seq -o /var/tmp/from_scwrl_126607458.pdb > /var/tmp/scwrl_126607458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126607458.pdb Number of alignments=637 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A22 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)E240 because last residue in template chain is (1w9aA)R147 T0506 23 :PFEAVR 1w9aA 7 :DDKLLA T0506 33 :VLHTSRTAALATLDP 1w9aA 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSI T0506 73 :GLTLHARNMETDARISVTLAPFGKG 1w9aA 53 :EPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDE 1w9aA 95 :PDD T0506 119 :VPLAIARYIARYPKAKLY 1w9aA 100 :VEALIALYRNIAGEHSDW T0506 178 :EELMAAAES 1w9aA 118 :DDYRQAMVT T0506 210 :GRWK 1w9aA 127 :DRRV T0506 224 :LASASDLARLWFAERV 1w9aA 131 :LLTLPISHVYGLPPGM Number of specific fragments extracted= 10 number of extra gaps= 0 total=5345 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1761698270.pdb -s /var/tmp/to_scwrl_1761698270.seq -o /var/tmp/from_scwrl_1761698270.pdb > /var/tmp/scwrl_1761698270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1761698270.pdb Number of alignments=638 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A22 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)R238 because last residue in template chain is (1w9aA)R147 T0506 23 :PFEAVR 1w9aA 7 :DDKLLA T0506 33 :VLHTSRTAALATLDP 1w9aA 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIAR 1w9aA 97 :DDTVEALIALYRNI T0506 171 :RTDLSGAEELMAAAES 1w9aA 111 :AGEHSDWDDYRQAMVT T0506 219 :PDGIDLASA 1w9aA 127 :DRRVLLTLP T0506 228 :SDLARLWFAE 1w9aA 137 :SHVYGLPPGM Number of specific fragments extracted= 9 number of extra gaps= 0 total=5354 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1622335660.pdb -s /var/tmp/to_scwrl_1622335660.seq -o /var/tmp/from_scwrl_1622335660.pdb > /var/tmp/scwrl_1622335660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1622335660.pdb Number of alignments=639 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A26 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)E240 because last residue in template chain is (1w9aA)R147 T0506 27 :VRVARDVLHTSRTAALATLDP 1w9aA 7 :DDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSI T0506 73 :GLTLHARNMETDARISVTLAPFGKG 1w9aA 53 :EPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 1w9aA 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 1w9aA 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 1w9aA 126 :TDRRVLLTLPISHVYGLPP T0506 238 :RV 1w9aA 145 :GM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5361 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1867187004.pdb -s /var/tmp/to_scwrl_1867187004.seq -o /var/tmp/from_scwrl_1867187004.pdb > /var/tmp/scwrl_1867187004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867187004.pdb Number of alignments=640 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A26 because first residue in template chain is (1w9aA)F6 Warning: unaligning (T0506)T241 because last residue in template chain is (1w9aA)R147 T0506 27 :VRVARDVLHTSRTAALATLDP 1w9aA 7 :DDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPD 1w9aA 79 :YAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 1w9aA 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 1w9aA 126 :TDRRVLLTLPISHVYGLPP T0506 238 :RV 1w9aA 145 :GM Number of specific fragments extracted= 7 number of extra gaps= 0 total=5368 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1986132370.pdb -s /var/tmp/to_scwrl_1986132370.seq -o /var/tmp/from_scwrl_1986132370.pdb > /var/tmp/scwrl_1986132370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1986132370.pdb Number of alignments=641 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 33 :VLHTSRTAALATLDP 1w9aA 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=5372 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1925470149.pdb -s /var/tmp/to_scwrl_1925470149.seq -o /var/tmp/from_scwrl_1925470149.pdb > /var/tmp/scwrl_1925470149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1925470149.pdb Number of alignments=642 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 33 :VLHTSRTAALATLDP 1w9aA 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=5376 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1494364108.pdb -s /var/tmp/to_scwrl_1494364108.seq -o /var/tmp/from_scwrl_1494364108.pdb > /var/tmp/scwrl_1494364108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494364108.pdb Number of alignments=643 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 33 :VLHTSRTAALATLDP 1w9aA 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=5380 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_623060394.pdb -s /var/tmp/to_scwrl_623060394.seq -o /var/tmp/from_scwrl_623060394.pdb > /var/tmp/scwrl_623060394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623060394.pdb Number of alignments=644 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD Number of specific fragments extracted= 4 number of extra gaps= 0 total=5384 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1147677352.pdb -s /var/tmp/to_scwrl_1147677352.seq -o /var/tmp/from_scwrl_1147677352.pdb > /var/tmp/scwrl_1147677352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147677352.pdb Number of alignments=645 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPDE 1w9aA 78 :SYAVAEGTAQLTPPAA T0506 119 :VPLAIARYIA 1w9aA 100 :VEALIALYRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=5389 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_564328281.pdb -s /var/tmp/to_scwrl_564328281.seq -o /var/tmp/from_scwrl_564328281.pdb > /var/tmp/scwrl_564328281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_564328281.pdb Number of alignments=646 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 1w9aA 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYL 1w9aA 100 :VEALIALYRNIAGEHSDWD Number of specific fragments extracted= 5 number of extra gaps= 0 total=5394 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1338748975.pdb -s /var/tmp/to_scwrl_1338748975.seq -o /var/tmp/from_scwrl_1338748975.pdb > /var/tmp/scwrl_1338748975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1338748975.pdb Number of alignments=647 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 1w9aA 79 :YAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQ 1w9aA 126 :TDRRVLLTLPISHVY Number of specific fragments extracted= 5 number of extra gaps= 0 total=5399 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_84627574.pdb -s /var/tmp/to_scwrl_84627574.seq -o /var/tmp/from_scwrl_84627574.pdb > /var/tmp/scwrl_84627574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_84627574.pdb Number of alignments=648 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 33 :VLHTSRTAALATLDP 1w9aA 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 1w9aA 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWD Number of specific fragments extracted= 4 number of extra gaps= 0 total=5403 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_611335356.pdb -s /var/tmp/to_scwrl_611335356.seq -o /var/tmp/from_scwrl_611335356.pdb > /var/tmp/scwrl_611335356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_611335356.pdb Number of alignments=649 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 27 :V 1w9aA 11 :L T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSI T0506 73 :GLTLHARNMETDARISVTLAPFGKG 1w9aA 53 :EPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 117 :DE 1w9aA 96 :DD T0506 119 :VPLAIARYIARYPKAKLYLS 1w9aA 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQ 1w9aA 126 :TDRRVLLTLPISHVY Number of specific fragments extracted= 8 number of extra gaps= 0 total=5411 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1153688665.pdb -s /var/tmp/to_scwrl_1153688665.seq -o /var/tmp/from_scwrl_1153688665.pdb > /var/tmp/scwrl_1153688665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153688665.pdb Number of alignments=650 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set Warning: unaligning (T0506)A22 because first residue in template chain is (1w9aA)F6 T0506 23 :PFEAVR 1w9aA 7 :DDKLLA T0506 33 :VLHTSRTAALATLDP 1w9aA 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 1w9aA 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIAR 1w9aA 97 :DDTVEALIALYRNI T0506 171 :RTDLSGAEELMAAAES 1w9aA 111 :AGEHSDWDDYRQAMVT T0506 228 :SDLARLWFA 1w9aA 127 :DRRVLLTLP Number of specific fragments extracted= 8 number of extra gaps= 0 total=5419 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_570054020.pdb -s /var/tmp/to_scwrl_570054020.seq -o /var/tmp/from_scwrl_570054020.pdb > /var/tmp/scwrl_570054020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_570054020.pdb Number of alignments=651 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 1w9aA 28 :DGRPQLSNVQYHFDPRKLLIQVSI T0506 73 :GLTLHARNMETDARISVTLAPFGKG 1w9aA 53 :EPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 1w9aA 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 1w9aA 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQI 1w9aA 126 :TDRRVLLTLPISHVYG Number of specific fragments extracted= 6 number of extra gaps= 0 total=5425 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_428694759.pdb -s /var/tmp/to_scwrl_428694759.seq -o /var/tmp/from_scwrl_428694759.pdb > /var/tmp/scwrl_428694759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428694759.pdb Number of alignments=652 # 1w9aA read from all-align.a2m # found chain 1w9aA in training set T0506 32 :DVLHTSRTAALATLDP 1w9aA 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 1w9aA 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 1w9aA 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPD 1w9aA 79 :YAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 1w9aA 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQ 1w9aA 126 :TDRRVLLTLPISHVY Number of specific fragments extracted= 6 number of extra gaps= 0 total=5431 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_774375567.pdb -s /var/tmp/to_scwrl_774375567.seq -o /var/tmp/from_scwrl_774375567.pdb > /var/tmp/scwrl_774375567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_774375567.pdb Number of alignments=653 1xhnA expands to /projects/compbio/data/pdb/1xhn.pdb.gz 1xhnA:Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 51, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 605, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 786, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 788, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 790, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 792, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1xhnA Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 1xhnA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xhnA read from all-align.a2m # adding 1xhnA to template set # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIG 1xhnA 42 :EAVRGRPFADVLSLS T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 61 :GAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DAL 1xhnA 105 :DPQ T0506 101 :TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 110 :LCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5437 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_175487595.pdb -s /var/tmp/to_scwrl_175487595.seq -o /var/tmp/from_scwrl_175487595.pdb > /var/tmp/scwrl_175487595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175487595.pdb Number of alignments=654 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIG 1xhnA 42 :EAVRGRPFADVLSLS T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 61 :GAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DAL 1xhnA 105 :DPQ T0506 101 :TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 110 :LCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG Number of specific fragments extracted= 5 number of extra gaps= 0 total=5442 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1625123392.pdb -s /var/tmp/to_scwrl_1625123392.seq -o /var/tmp/from_scwrl_1625123392.pdb > /var/tmp/scwrl_1625123392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1625123392.pdb Number of alignments=655 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 24 :FEAVRVARDVLHTSRTAALATL 1xhnA 17 :EDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIG 1xhnA 42 :EAVRGRPFADVLSLS T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 61 :GAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DAL 1xhnA 105 :DPQ T0506 101 :TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 110 :LCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADL 1xhnA 170 :PKIVTPEEY Number of specific fragments extracted= 6 number of extra gaps= 0 total=5448 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2054527887.pdb -s /var/tmp/to_scwrl_2054527887.seq -o /var/tmp/from_scwrl_2054527887.pdb > /var/tmp/scwrl_2054527887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2054527887.pdb Number of alignments=656 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATL 1xhnA 16 :REDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIG 1xhnA 42 :EAVRGRPFADVLSLS T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 61 :GAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DAL 1xhnA 105 :DPQ T0506 101 :TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 110 :LCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADL 1xhnA 170 :PKIVTPEEY Number of specific fragments extracted= 6 number of extra gaps= 0 total=5454 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_168860008.pdb -s /var/tmp/to_scwrl_168860008.seq -o /var/tmp/from_scwrl_168860008.pdb > /var/tmp/scwrl_168860008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_168860008.pdb Number of alignments=657 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIGIEP 1xhnA 42 :EAVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQ T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 105 :DPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 5 number of extra gaps= 0 total=5459 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1950285406.pdb -s /var/tmp/to_scwrl_1950285406.seq -o /var/tmp/from_scwrl_1950285406.pdb > /var/tmp/scwrl_1950285406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1950285406.pdb Number of alignments=658 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATL 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIGIEP 1xhnA 42 :EAVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQ T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 105 :DPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 5 number of extra gaps= 0 total=5464 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_34220535.pdb -s /var/tmp/to_scwrl_34220535.seq -o /var/tmp/from_scwrl_34220535.pdb > /var/tmp/scwrl_34220535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34220535.pdb Number of alignments=659 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 21 :GAPFEAVRVARDVLHTSRTAALATL 1xhnA 14 :PPREDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIGIEP 1xhnA 42 :EAVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQ T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGG 1xhnA 105 :DPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=5468 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1587881315.pdb -s /var/tmp/to_scwrl_1587881315.seq -o /var/tmp/from_scwrl_1587881315.pdb > /var/tmp/scwrl_1587881315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1587881315.pdb Number of alignments=660 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 21 :GAPFEAVRVARDVLHTSRTAALATL 1xhnA 14 :PPREDAARVARFVTHVSDWGALATI T0506 46 :DPVSGYPYTTATNIGIEP 1xhnA 42 :EAVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQ T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGP 1xhnA 105 :DPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYF Number of specific fragments extracted= 4 number of extra gaps= 0 total=5472 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1160596595.pdb -s /var/tmp/to_scwrl_1160596595.seq -o /var/tmp/from_scwrl_1160596595.pdb > /var/tmp/scwrl_1160596595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160596595.pdb Number of alignments=661 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 25 :EAVRVARDVLHTSRTAALA 1xhnA 18 :DAARVARFVTHVSDWGALA T0506 44 :TLDPVSGYPYTTATNIGIEPDGT 1xhnA 40 :TLEAVRGRPFADVLSLSDGPPGA T0506 67 :PFFFAAGLTLHARNMETDARISVTL 1xhnA 67 :PYFYLSPLQLSVSNLQENPYATLTM Number of specific fragments extracted= 3 number of extra gaps= 0 total=5475 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1724371407.pdb -s /var/tmp/to_scwrl_1724371407.seq -o /var/tmp/from_scwrl_1724371407.pdb > /var/tmp/scwrl_1724371407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724371407.pdb Number of alignments=662 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 25 :EAVRVARDVLHTSRTAALAT 1xhnA 18 :DAARVARFVTHVSDWGALAT T0506 45 :LDPVSGYPYTTATNIGIEPD 1xhnA 41 :LEAVRGRPFADVLSLSDGPP T0506 65 :GTPFFFAAGLTLHARNMETD 1xhnA 65 :GVPYFYLSPLQLSVSNLQEN T0506 85 :ARISVTLAP 1xhnA 87 :ATLTMTLAQ T0506 94 :FGKGDALT 1xhnA 98 :FCKKHGFD T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGV 1xhnA 111 :CVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNI Number of specific fragments extracted= 6 number of extra gaps= 0 total=5481 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1135218014.pdb -s /var/tmp/to_scwrl_1135218014.seq -o /var/tmp/from_scwrl_1135218014.pdb > /var/tmp/scwrl_1135218014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1135218014.pdb Number of alignments=663 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5487 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1383211371.pdb -s /var/tmp/to_scwrl_1383211371.seq -o /var/tmp/from_scwrl_1383211371.pdb > /var/tmp/scwrl_1383211371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1383211371.pdb Number of alignments=664 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5493 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1086642842.pdb -s /var/tmp/to_scwrl_1086642842.seq -o /var/tmp/from_scwrl_1086642842.pdb > /var/tmp/scwrl_1086642842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1086642842.pdb Number of alignments=665 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5499 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1509170942.pdb -s /var/tmp/to_scwrl_1509170942.seq -o /var/tmp/from_scwrl_1509170942.pdb > /var/tmp/scwrl_1509170942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1509170942.pdb Number of alignments=666 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5505 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_27522281.pdb -s /var/tmp/to_scwrl_27522281.seq -o /var/tmp/from_scwrl_27522281.pdb > /var/tmp/scwrl_27522281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27522281.pdb Number of alignments=667 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5511 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1213250301.pdb -s /var/tmp/to_scwrl_1213250301.seq -o /var/tmp/from_scwrl_1213250301.pdb > /var/tmp/scwrl_1213250301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1213250301.pdb Number of alignments=668 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5517 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1123385565.pdb -s /var/tmp/to_scwrl_1123385565.seq -o /var/tmp/from_scwrl_1123385565.pdb > /var/tmp/scwrl_1123385565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1123385565.pdb Number of alignments=669 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 49 :SGYPYTTATNIGIEP 1xhnA 45 :RGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5523 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1649857941.pdb -s /var/tmp/to_scwrl_1649857941.seq -o /var/tmp/from_scwrl_1649857941.pdb > /var/tmp/scwrl_1649857941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1649857941.pdb Number of alignments=670 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5529 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_932953659.pdb -s /var/tmp/to_scwrl_932953659.seq -o /var/tmp/from_scwrl_932953659.pdb > /var/tmp/scwrl_932953659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_932953659.pdb Number of alignments=671 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 65 :GVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5535 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_962034289.pdb -s /var/tmp/to_scwrl_962034289.seq -o /var/tmp/from_scwrl_962034289.pdb > /var/tmp/scwrl_962034289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962034289.pdb Number of alignments=672 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIE 1xhnA 44 :VRGRPFADVLSLSDG T0506 63 :PD 1xhnA 60 :PG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 65 :GVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 7 number of extra gaps= 0 total=5542 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1427844443.pdb -s /var/tmp/to_scwrl_1427844443.seq -o /var/tmp/from_scwrl_1427844443.pdb > /var/tmp/scwrl_1427844443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1427844443.pdb Number of alignments=673 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5548 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_279834121.pdb -s /var/tmp/to_scwrl_279834121.seq -o /var/tmp/from_scwrl_279834121.pdb > /var/tmp/scwrl_279834121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_279834121.pdb Number of alignments=674 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEPDGT 1xhnA 44 :VRGRPFADVLSLSDGPPGA T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 67 :PYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5554 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1585094682.pdb -s /var/tmp/to_scwrl_1585094682.seq -o /var/tmp/from_scwrl_1585094682.pdb > /var/tmp/scwrl_1585094682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585094682.pdb Number of alignments=675 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5560 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_428038150.pdb -s /var/tmp/to_scwrl_428038150.seq -o /var/tmp/from_scwrl_428038150.pdb > /var/tmp/scwrl_428038150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428038150.pdb Number of alignments=676 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5566 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_844162402.pdb -s /var/tmp/to_scwrl_844162402.seq -o /var/tmp/from_scwrl_844162402.pdb > /var/tmp/scwrl_844162402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_844162402.pdb Number of alignments=677 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5572 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_776360011.pdb -s /var/tmp/to_scwrl_776360011.seq -o /var/tmp/from_scwrl_776360011.pdb > /var/tmp/scwrl_776360011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_776360011.pdb Number of alignments=678 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5578 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_512665724.pdb -s /var/tmp/to_scwrl_512665724.seq -o /var/tmp/from_scwrl_512665724.pdb > /var/tmp/scwrl_512665724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512665724.pdb Number of alignments=679 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5584 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1455497757.pdb -s /var/tmp/to_scwrl_1455497757.seq -o /var/tmp/from_scwrl_1455497757.pdb > /var/tmp/scwrl_1455497757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455497757.pdb Number of alignments=680 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5590 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1930048676.pdb -s /var/tmp/to_scwrl_1930048676.seq -o /var/tmp/from_scwrl_1930048676.pdb > /var/tmp/scwrl_1930048676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1930048676.pdb Number of alignments=681 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 49 :SGYPYTTATNIGIEP 1xhnA 45 :RGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5596 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1082719744.pdb -s /var/tmp/to_scwrl_1082719744.seq -o /var/tmp/from_scwrl_1082719744.pdb > /var/tmp/scwrl_1082719744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1082719744.pdb Number of alignments=682 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 50 :GYPYTTATNIGIEP 1xhnA 46 :GRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5602 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1884192516.pdb -s /var/tmp/to_scwrl_1884192516.seq -o /var/tmp/from_scwrl_1884192516.pdb > /var/tmp/scwrl_1884192516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1884192516.pdb Number of alignments=683 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 65 :GVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5608 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_556940596.pdb -s /var/tmp/to_scwrl_556940596.seq -o /var/tmp/from_scwrl_556940596.pdb > /var/tmp/scwrl_556940596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_556940596.pdb Number of alignments=684 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIE 1xhnA 44 :VRGRPFADVLSLSDG T0506 63 :PD 1xhnA 60 :PG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 65 :GVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 7 number of extra gaps= 0 total=5615 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1258207339.pdb -s /var/tmp/to_scwrl_1258207339.seq -o /var/tmp/from_scwrl_1258207339.pdb > /var/tmp/scwrl_1258207339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1258207339.pdb Number of alignments=685 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEP 1xhnA 44 :VRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5621 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1361832261.pdb -s /var/tmp/to_scwrl_1361832261.seq -o /var/tmp/from_scwrl_1361832261.pdb > /var/tmp/scwrl_1361832261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1361832261.pdb Number of alignments=686 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 1xhnA 13 :LPPREDAARVARFVTHVSDWGALATIST T0506 48 :VSGYPYTTATNIGIEPDGT 1xhnA 44 :VRGRPFADVLSLSDGPPGA T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 67 :PYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPR 1xhnA 105 :DPQSPLC T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 1xhnA 114 :IMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG T0506 162 :ASNITPADLRTD 1xhnA 170 :PKIVTPEEYYNV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5627 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_463984837.pdb -s /var/tmp/to_scwrl_463984837.seq -o /var/tmp/from_scwrl_463984837.pdb > /var/tmp/scwrl_463984837.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463984837.pdb Number of alignments=687 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5631 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1427067347.pdb -s /var/tmp/to_scwrl_1427067347.seq -o /var/tmp/from_scwrl_1427067347.pdb > /var/tmp/scwrl_1427067347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1427067347.pdb Number of alignments=688 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5635 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1164634020.pdb -s /var/tmp/to_scwrl_1164634020.seq -o /var/tmp/from_scwrl_1164634020.pdb > /var/tmp/scwrl_1164634020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164634020.pdb Number of alignments=689 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5639 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_498205372.pdb -s /var/tmp/to_scwrl_498205372.seq -o /var/tmp/from_scwrl_498205372.pdb > /var/tmp/scwrl_498205372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498205372.pdb Number of alignments=690 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5643 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_867465017.pdb -s /var/tmp/to_scwrl_867465017.seq -o /var/tmp/from_scwrl_867465017.pdb > /var/tmp/scwrl_867465017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_867465017.pdb Number of alignments=691 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5647 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_177746969.pdb -s /var/tmp/to_scwrl_177746969.seq -o /var/tmp/from_scwrl_177746969.pdb > /var/tmp/scwrl_177746969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_177746969.pdb Number of alignments=692 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5651 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_75093132.pdb -s /var/tmp/to_scwrl_75093132.seq -o /var/tmp/from_scwrl_75093132.pdb > /var/tmp/scwrl_75093132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75093132.pdb Number of alignments=693 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5655 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2002683031.pdb -s /var/tmp/to_scwrl_2002683031.seq -o /var/tmp/from_scwrl_2002683031.pdb > /var/tmp/scwrl_2002683031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2002683031.pdb Number of alignments=694 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5659 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1560958340.pdb -s /var/tmp/to_scwrl_1560958340.seq -o /var/tmp/from_scwrl_1560958340.pdb > /var/tmp/scwrl_1560958340.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1560958340.pdb Number of alignments=695 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5663 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1161735975.pdb -s /var/tmp/to_scwrl_1161735975.seq -o /var/tmp/from_scwrl_1161735975.pdb > /var/tmp/scwrl_1161735975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1161735975.pdb Number of alignments=696 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5667 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1364370326.pdb -s /var/tmp/to_scwrl_1364370326.seq -o /var/tmp/from_scwrl_1364370326.pdb > /var/tmp/scwrl_1364370326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1364370326.pdb Number of alignments=697 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5671 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1588480622.pdb -s /var/tmp/to_scwrl_1588480622.seq -o /var/tmp/from_scwrl_1588480622.pdb > /var/tmp/scwrl_1588480622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1588480622.pdb Number of alignments=698 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5675 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_227502630.pdb -s /var/tmp/to_scwrl_227502630.seq -o /var/tmp/from_scwrl_227502630.pdb > /var/tmp/scwrl_227502630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_227502630.pdb Number of alignments=699 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5679 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_340272245.pdb -s /var/tmp/to_scwrl_340272245.seq -o /var/tmp/from_scwrl_340272245.pdb > /var/tmp/scwrl_340272245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_340272245.pdb Number of alignments=700 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5683 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1090854916.pdb -s /var/tmp/to_scwrl_1090854916.seq -o /var/tmp/from_scwrl_1090854916.pdb > /var/tmp/scwrl_1090854916.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1090854916.pdb Number of alignments=701 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5687 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1160456288.pdb -s /var/tmp/to_scwrl_1160456288.seq -o /var/tmp/from_scwrl_1160456288.pdb > /var/tmp/scwrl_1160456288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160456288.pdb Number of alignments=702 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5691 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1302306533.pdb -s /var/tmp/to_scwrl_1302306533.seq -o /var/tmp/from_scwrl_1302306533.pdb > /var/tmp/scwrl_1302306533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1302306533.pdb Number of alignments=703 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5695 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_371215714.pdb -s /var/tmp/to_scwrl_371215714.seq -o /var/tmp/from_scwrl_371215714.pdb > /var/tmp/scwrl_371215714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371215714.pdb Number of alignments=704 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5699 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1440290409.pdb -s /var/tmp/to_scwrl_1440290409.seq -o /var/tmp/from_scwrl_1440290409.pdb > /var/tmp/scwrl_1440290409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1440290409.pdb Number of alignments=705 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5703 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_739917569.pdb -s /var/tmp/to_scwrl_739917569.seq -o /var/tmp/from_scwrl_739917569.pdb > /var/tmp/scwrl_739917569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_739917569.pdb Number of alignments=706 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5707 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_799253864.pdb -s /var/tmp/to_scwrl_799253864.seq -o /var/tmp/from_scwrl_799253864.pdb > /var/tmp/scwrl_799253864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_799253864.pdb Number of alignments=707 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5711 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_136969164.pdb -s /var/tmp/to_scwrl_136969164.seq -o /var/tmp/from_scwrl_136969164.pdb > /var/tmp/scwrl_136969164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136969164.pdb Number of alignments=708 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5715 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1516277579.pdb -s /var/tmp/to_scwrl_1516277579.seq -o /var/tmp/from_scwrl_1516277579.pdb > /var/tmp/scwrl_1516277579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1516277579.pdb Number of alignments=709 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5719 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1311919587.pdb -s /var/tmp/to_scwrl_1311919587.seq -o /var/tmp/from_scwrl_1311919587.pdb > /var/tmp/scwrl_1311919587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1311919587.pdb Number of alignments=710 # 1xhnA read from all-align.a2m # found chain 1xhnA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1xhnA)G11 Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 19 :SAGAPFEAVRVARDVLHTSRTAALATLD 1xhnA 12 :SLPPREDAARVARFVTHVSDWGALATIS T0506 47 :PVSGYPYTTATNIGIEP 1xhnA 43 :AVRGRPFADVLSLSDGP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 1xhnA 64 :SGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTN T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRT 1xhnA 107 :QSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5723 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1592466921.pdb -s /var/tmp/to_scwrl_1592466921.seq -o /var/tmp/from_scwrl_1592466921.pdb > /var/tmp/scwrl_1592466921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1592466921.pdb Number of alignments=711 2a2jA expands to /projects/compbio/data/pdb/2a2j.pdb.gz 2a2jA:# 2a2jA read from all-align.a2m # adding 2a2jA to template set # found chain 2a2jA in template set Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)D3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)E246 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)K247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 1 :M 2a2jA 24 :P T0506 4 :V 2a2jA 27 :D T0506 9 :ITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFP T0506 98 :DALTLPRLTLVGRADRIGP 2a2jA 114 :WYQLGRQAHVQGPVSKVST T0506 198 :ASRLAVLAGAKTGRWKITSIDPDGIDLASASDL 2a2jA 133 :EEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQL T0506 231 :ARLWFAERVETLKQF 2a2jA 190 :GYRIAPEIVEFWQGR T0506 248 :ALAQLLK 2a2jA 207 :RMHNRIR Number of specific fragments extracted= 8 number of extra gaps= 2 total=5731 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1298842608.pdb -s /var/tmp/to_scwrl_1298842608.seq -o /var/tmp/from_scwrl_1298842608.pdb > /var/tmp/scwrl_1298842608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1298842608.pdb Number of alignments=712 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)D3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 T0506 1 :M 2a2jA 24 :P T0506 4 :V 2a2jA 27 :D T0506 9 :ITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFP T0506 98 :DALTLPRLTLVGRADRIGP 2a2jA 114 :WYQLGRQAHVQGPVSKVST T0506 198 :ASRLAVLAGAKTGRWKITSIDPDGIDLASASDL 2a2jA 133 :EEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQL T0506 231 :ARLWF 2a2jA 210 :NRIRV T0506 246 :EKALAQ 2a2jA 215 :ANGRLE T0506 252 :LLK 2a2jA 222 :LQP Number of specific fragments extracted= 9 number of extra gaps= 1 total=5740 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_247155685.pdb -s /var/tmp/to_scwrl_247155685.seq -o /var/tmp/from_scwrl_247155685.pdb > /var/tmp/scwrl_247155685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_247155685.pdb Number of alignments=713 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 28 :RVARDVLHTSRTAALATLD 2a2jA 51 :DAQRAGVSEPNAMVLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFP T0506 98 :DALTLPRLTLVGRADRIGPDEV 2a2jA 114 :WYQLGRQAHVQGPVSKVSTEEI T0506 123 :IARYIARYPKAKLYLSLPD 2a2jA 136 :FTYWSMRPRGAQLGAWASQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5744 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1329175790.pdb -s /var/tmp/to_scwrl_1329175790.seq -o /var/tmp/from_scwrl_1329175790.pdb > /var/tmp/scwrl_1329175790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329175790.pdb Number of alignments=714 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 28 :RVARDVLHTSRTAALATLD 2a2jA 51 :DAQRAGVSEPNAMVLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFP T0506 98 :DALTLPRLTLVGRADRIGPDEV 2a2jA 114 :WYQLGRQAHVQGPVSKVSTEEI T0506 123 :IARYIARYPKAKLYLSLPD 2a2jA 136 :FTYWSMRPRGAQLGAWASQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5748 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1855783204.pdb -s /var/tmp/to_scwrl_1855783204.seq -o /var/tmp/from_scwrl_1855783204.pdb > /var/tmp/scwrl_1855783204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855783204.pdb Number of alignments=715 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)D3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)S199 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)R200 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)G206 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)A207 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A227 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)S228 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)K247 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)A248 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 1 :M 2a2jA 24 :P T0506 4 :V 2a2jA 27 :D T0506 9 :ITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI T0506 124 :ARYIARYPKAKLYLSLPDTRLYRL 2a2jA 136 :FTYWSMRPRGAQLGAWASQQSRPV T0506 185 :ESEATRLNAIKGEA 2a2jA 160 :GSRAQLDNQLAEVT T0506 201 :L 2a2jA 176 :F T0506 202 :AVLA 2a2jA 178 :DQDQ T0506 208 :KTGRWKITSIDPDGID 2a2jA 184 :VPPGWGGYRIAPEIVE T0506 224 :LAS 2a2jA 202 :QGR T0506 229 :DLARLWFAERVETLKQFE 2a2jA 207 :RMHNRIRVANGRLERLQP Number of specific fragments extracted= 12 number of extra gaps= 5 total=5760 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1505363024.pdb -s /var/tmp/to_scwrl_1505363024.seq -o /var/tmp/from_scwrl_1505363024.pdb > /var/tmp/scwrl_1505363024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1505363024.pdb Number of alignments=716 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)D3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)T189 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)R190 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)A198 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)S199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)D229 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)K247 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 T0506 1 :M 2a2jA 24 :P T0506 4 :V 2a2jA 27 :D T0506 9 :ITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLD 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI T0506 124 :ARYIARYPKAKLYLSLPDTRLYRL 2a2jA 136 :FTYWSMRPRGAQLGAWASQQSRPV T0506 175 :SGAEELMAAAESEA 2a2jA 160 :GSRAQLDNQLAEVT T0506 191 :LNA 2a2jA 176 :FAD T0506 195 :KGE 2a2jA 179 :QDQ T0506 200 :R 2a2jA 184 :V T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 230 :LARLWFAERVETLKQFE 2a2jA 208 :MHNRIRVANGRLERLQP Number of specific fragments extracted= 12 number of extra gaps= 5 total=5772 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_543524405.pdb -s /var/tmp/to_scwrl_543524405.seq -o /var/tmp/from_scwrl_543524405.pdb > /var/tmp/scwrl_543524405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_543524405.pdb Number of alignments=717 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYT 2a2jA 70 :DGKPVT Number of specific fragments extracted= 2 number of extra gaps= 0 total=5774 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_172284394.pdb -s /var/tmp/to_scwrl_172284394.seq -o /var/tmp/from_scwrl_172284394.pdb > /var/tmp/scwrl_172284394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172284394.pdb Number of alignments=718 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 39 :TAALATLD 2a2jA 62 :AMVLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPW Number of specific fragments extracted= 2 number of extra gaps= 0 total=5776 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_784946726.pdb -s /var/tmp/to_scwrl_784946726.seq -o /var/tmp/from_scwrl_784946726.pdb > /var/tmp/scwrl_784946726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784946726.pdb Number of alignments=719 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5776 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5776 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)E178 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E179 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDG 2a2jA 83 :LDESG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 88 :VAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NAS 2a2jA 207 :RMH T0506 164 :NITPADLRTDLSGA 2a2jA 211 :RIRVANGRLERLQP Number of specific fragments extracted= 10 number of extra gaps= 4 total=5786 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1708158425.pdb -s /var/tmp/to_scwrl_1708158425.seq -o /var/tmp/from_scwrl_1708158425.pdb > /var/tmp/scwrl_1708158425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1708158425.pdb Number of alignments=720 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)G176 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)A177 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NAS 2a2jA 207 :RMH T0506 164 :NITPADLRTDLS 2a2jA 213 :RVANGRLERLQP Number of specific fragments extracted= 10 number of extra gaps= 4 total=5796 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_670489767.pdb -s /var/tmp/to_scwrl_670489767.seq -o /var/tmp/from_scwrl_670489767.pdb > /var/tmp/scwrl_670489767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_670489767.pdb Number of alignments=721 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 165 :ITPAD 2a2jA 212 :IRVAN T0506 247 :KALAQLLK 2a2jA 217 :GRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 3 total=5807 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1652411742.pdb -s /var/tmp/to_scwrl_1652411742.seq -o /var/tmp/from_scwrl_1652411742.pdb > /var/tmp/scwrl_1652411742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1652411742.pdb Number of alignments=722 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 4 total=5818 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1885905395.pdb -s /var/tmp/to_scwrl_1885905395.seq -o /var/tmp/from_scwrl_1885905395.pdb > /var/tmp/scwrl_1885905395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1885905395.pdb Number of alignments=723 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 4 total=5829 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_745582899.pdb -s /var/tmp/to_scwrl_745582899.seq -o /var/tmp/from_scwrl_745582899.pdb > /var/tmp/scwrl_745582899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745582899.pdb Number of alignments=724 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 23 :PFEAVRVARDVLH 2a2jA 38 :DDGWLTLLRRWLN T0506 36 :TSRTAALATLD 2a2jA 59 :EPNAMVLATVA T0506 49 :SGYPYTTATNIG 2a2jA 70 :DGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 4 total=5840 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1507611126.pdb -s /var/tmp/to_scwrl_1507611126.seq -o /var/tmp/from_scwrl_1507611126.pdb > /var/tmp/scwrl_1507611126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1507611126.pdb Number of alignments=725 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 4 total=5851 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1299380088.pdb -s /var/tmp/to_scwrl_1299380088.seq -o /var/tmp/from_scwrl_1299380088.pdb > /var/tmp/scwrl_1299380088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1299380088.pdb Number of alignments=726 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)G176 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)A177 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NAS 2a2jA 207 :RMH T0506 164 :NITPADLRTDLS 2a2jA 213 :RVANGRLERLQP Number of specific fragments extracted= 10 number of extra gaps= 4 total=5861 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1907318874.pdb -s /var/tmp/to_scwrl_1907318874.seq -o /var/tmp/from_scwrl_1907318874.pdb > /var/tmp/scwrl_1907318874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1907318874.pdb Number of alignments=727 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)T14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 13 :G 2a2jA 27 :D T0506 18 :PSAGA 2a2jA 32 :LDFDW T0506 23 :PFEAVRVARDVLH 2a2jA 38 :DDGWLTLLRRWLN T0506 36 :TSRTAALATL 2a2jA 59 :EPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDG 2a2jA 83 :LDESG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 88 :VAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 13 number of extra gaps= 4 total=5874 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_724497806.pdb -s /var/tmp/to_scwrl_724497806.seq -o /var/tmp/from_scwrl_724497806.pdb > /var/tmp/scwrl_724497806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724497806.pdb Number of alignments=728 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)D3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 4 :V 2a2jA 27 :D T0506 9 :ITPRGTK 2a2jA 32 :LDFDWLD T0506 24 :FEAVRVARDVLH 2a2jA 39 :DGWLTLLRRWLN T0506 36 :TSRTAALATLD 2a2jA 59 :EPNAMVLATVA T0506 49 :SGYPYTTATNIG 2a2jA 70 :DGKPVTRSVLCK T0506 61 :IEPDG 2a2jA 83 :LDESG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 88 :VAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 13 number of extra gaps= 5 total=5887 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_740377064.pdb -s /var/tmp/to_scwrl_740377064.seq -o /var/tmp/from_scwrl_740377064.pdb > /var/tmp/scwrl_740377064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_740377064.pdb Number of alignments=729 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 23 :PFEAVRVARDVLH 2a2jA 38 :DDGWLTLLRRWLN T0506 36 :TSRTAALATLD 2a2jA 59 :EPNAMVLATVA T0506 49 :SGYPYTTATNIG 2a2jA 70 :DGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 4 total=5898 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2134821504.pdb -s /var/tmp/to_scwrl_2134821504.seq -o /var/tmp/from_scwrl_2134821504.pdb > /var/tmp/scwrl_2134821504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2134821504.pdb Number of alignments=730 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)A236 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :ASDLARLWF 2a2jA 216 :NGRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 4 total=5909 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1064770051.pdb -s /var/tmp/to_scwrl_1064770051.seq -o /var/tmp/from_scwrl_1064770051.pdb > /var/tmp/scwrl_1064770051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064770051.pdb Number of alignments=731 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 10 :TPRGTKIEPSAGAPFEAVRVARDV 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDG 2a2jA 83 :LDESG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 88 :VAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN Number of specific fragments extracted= 9 number of extra gaps= 3 total=5918 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1831231981.pdb -s /var/tmp/to_scwrl_1831231981.seq -o /var/tmp/from_scwrl_1831231981.pdb > /var/tmp/scwrl_1831231981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831231981.pdb Number of alignments=732 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 12 :RGTKIEPSAGAPFEAVRVARDV 2a2jA 34 :FDWLDDGWLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NAS 2a2jA 207 :RMH Number of specific fragments extracted= 9 number of extra gaps= 3 total=5927 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1147794146.pdb -s /var/tmp/to_scwrl_1147794146.seq -o /var/tmp/from_scwrl_1147794146.pdb > /var/tmp/scwrl_1147794146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147794146.pdb Number of alignments=733 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 11 :PRGTKIEPSAGAPFEAVRVARDV 2a2jA 33 :DFDWLDDGWLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASNI 2a2jA 207 :RMHNR Number of specific fragments extracted= 9 number of extra gaps= 3 total=5936 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_219592937.pdb -s /var/tmp/to_scwrl_219592937.seq -o /var/tmp/from_scwrl_219592937.pdb > /var/tmp/scwrl_219592937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219592937.pdb Number of alignments=734 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 15 :KIEPSAGAPFEAVRVARDV 2a2jA 37 :LDDGWLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN Number of specific fragments extracted= 9 number of extra gaps= 3 total=5945 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_54964048.pdb -s /var/tmp/to_scwrl_54964048.seq -o /var/tmp/from_scwrl_54964048.pdb > /var/tmp/scwrl_54964048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54964048.pdb Number of alignments=735 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NAS 2a2jA 207 :RMH Number of specific fragments extracted= 9 number of extra gaps= 3 total=5954 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_440600909.pdb -s /var/tmp/to_scwrl_440600909.seq -o /var/tmp/from_scwrl_440600909.pdb > /var/tmp/scwrl_440600909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440600909.pdb Number of alignments=736 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)T14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 13 :G 2a2jA 27 :D T0506 18 :PSAGA 2a2jA 32 :LDFDW T0506 23 :PFEAVRVARDVLH 2a2jA 38 :DDGWLTLLRRWLN T0506 36 :TSRTAALATLD 2a2jA 59 :EPNAMVLATVA T0506 49 :SGYPYTTATNIG 2a2jA 70 :DGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN Number of specific fragments extracted= 11 number of extra gaps= 3 total=5965 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_959510506.pdb -s /var/tmp/to_scwrl_959510506.seq -o /var/tmp/from_scwrl_959510506.pdb > /var/tmp/scwrl_959510506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_959510506.pdb Number of alignments=737 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 10 :TPRGTKIEPSAGAPFEAVRVARDV 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN Number of specific fragments extracted= 9 number of extra gaps= 3 total=5974 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_854217912.pdb -s /var/tmp/to_scwrl_854217912.seq -o /var/tmp/from_scwrl_854217912.pdb > /var/tmp/scwrl_854217912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854217912.pdb Number of alignments=738 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)G13 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 14 :TKIEP 2a2jA 32 :LDFDW T0506 19 :SAGAPFEAVRVARDV 2a2jA 41 :WLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NAS 2a2jA 207 :RMH Number of specific fragments extracted= 10 number of extra gaps= 3 total=5984 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_577570074.pdb -s /var/tmp/to_scwrl_577570074.seq -o /var/tmp/from_scwrl_577570074.pdb > /var/tmp/scwrl_577570074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577570074.pdb Number of alignments=739 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)T14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 13 :G 2a2jA 27 :D T0506 18 :PSAGA 2a2jA 32 :LDFDW T0506 23 :PFEAVRVARDVLH 2a2jA 38 :DDGWLTLLRRWLN T0506 36 :TSRTAALATL 2a2jA 59 :EPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDG 2a2jA 83 :LDESG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 88 :VAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN T0506 223 :DLAS 2a2jA 211 :RIRV T0506 227 :A 2a2jA 216 :N Number of specific fragments extracted= 13 number of extra gaps= 3 total=5997 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_328304438.pdb -s /var/tmp/to_scwrl_328304438.seq -o /var/tmp/from_scwrl_328304438.pdb > /var/tmp/scwrl_328304438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328304438.pdb Number of alignments=740 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)A5 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)V8 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 4 :V 2a2jA 27 :D T0506 9 :ITPRGTK 2a2jA 32 :LDFDWLD T0506 24 :FEAVRVARDVLH 2a2jA 39 :DGWLTLLRRWLN T0506 36 :TSRTAALATLD 2a2jA 59 :EPNAMVLATVA T0506 49 :SGYPYTTATNIG 2a2jA 70 :DGKPVTRSVLCK T0506 61 :IEPDG 2a2jA 83 :LDESG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 88 :VAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NA 2a2jA 207 :RM T0506 228 :SDLARLW 2a2jA 209 :HNRIRVA Number of specific fragments extracted= 12 number of extra gaps= 3 total=6009 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_18653852.pdb -s /var/tmp/to_scwrl_18653852.seq -o /var/tmp/from_scwrl_18653852.pdb > /var/tmp/scwrl_18653852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_18653852.pdb Number of alignments=741 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)T14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 13 :G 2a2jA 27 :D T0506 18 :PSAGA 2a2jA 32 :LDFDW T0506 23 :PFEAVRVARDVLH 2a2jA 38 :DDGWLTLLRRWLN T0506 36 :TSRTAALATLD 2a2jA 59 :EPNAMVLATVA T0506 49 :SGYPYTTATNIG 2a2jA 70 :DGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NAS 2a2jA 207 :RMH Number of specific fragments extracted= 11 number of extra gaps= 3 total=6020 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_22553348.pdb -s /var/tmp/to_scwrl_22553348.seq -o /var/tmp/from_scwrl_22553348.pdb > /var/tmp/scwrl_22553348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22553348.pdb Number of alignments=742 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)V8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I9 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R129 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2a2jA)P183 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2a2jA)P183 Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)R160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 10 :TPRGTKIEPSAGAPFEAVRVARDV 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 34 :LHTSRTAALATL 2a2jA 57 :VSEPNAMVLATV T0506 48 :VSGYPYTTATNIG 2a2jA 69 :ADGKPVTRSVLCK T0506 61 :IEPDGT 2a2jA 83 :LDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIA 2a2jA 119 :RQAHVQGPVSKVSTEEIFTYWSMRPR T0506 130 :YPKAKL 2a2jA 176 :FADQDQ T0506 138 :SLPDTRLYRLRTEGVQINGGP 2a2jA 184 :VPPGWGGYRIAPEIVEFWQGR T0506 161 :NASN 2a2jA 207 :RMHN Number of specific fragments extracted= 9 number of extra gaps= 3 total=6029 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1627147046.pdb -s /var/tmp/to_scwrl_1627147046.seq -o /var/tmp/from_scwrl_1627147046.pdb > /var/tmp/scwrl_1627147046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1627147046.pdb Number of alignments=743 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R200 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D229 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)L230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)L253 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)K254 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 19 :SAGAPFEAVRVARDVLHTSRTA 2a2jA 34 :FDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI T0506 124 :ARYIARYPKAKLYLSL 2a2jA 136 :FTYWSMRPRGAQLGAW T0506 164 :NITPADLRTDLSGAEELMAAAE 2a2jA 152 :ASQQSRPVGSRAQLDNQLAEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 231 :A 2a2jA 207 :R T0506 232 :RLWFAERVETLKQFEK 2a2jA 209 :HNRIRVANGRLERLQP Number of specific fragments extracted= 12 number of extra gaps= 3 total=6041 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_265809538.pdb -s /var/tmp/to_scwrl_265809538.seq -o /var/tmp/from_scwrl_265809538.pdb > /var/tmp/scwrl_265809538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265809538.pdb Number of alignments=744 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R200 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)L201 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D223 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)L224 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)K243 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)Q244 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 31 :RDVLHTSRTA 2a2jA 47 :RWLNDAQRAG T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 141 :DTRLYRLRTEGVQINGG 2a2jA 135 :IFTYWSMRPRGAQLGAW T0506 178 :EELMAAAESEATRLNAIKGEAS 2a2jA 152 :ASQQSRPVGSRAQLDNQLAEVT T0506 202 :AVLA 2a2jA 176 :FADQ T0506 206 :GAKTGRWKITS 2a2jA 185 :PPGWGGYRIAP T0506 217 :IDPDGI 2a2jA 199 :EFWQGR T0506 225 :ASASDLARLWFAERVETL 2a2jA 207 :RMHNRIRVANGRLERLQP Number of specific fragments extracted= 10 number of extra gaps= 3 total=6051 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1351729139.pdb -s /var/tmp/to_scwrl_1351729139.seq -o /var/tmp/from_scwrl_1351729139.pdb > /var/tmp/scwrl_1351729139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351729139.pdb Number of alignments=745 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R200 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)L201 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D223 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)L224 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)K243 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)Q244 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 31 :RDVLHTSRTA 2a2jA 47 :RWLNDAQRAG T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 142 :TRLYRLRTEGVQINGG 2a2jA 136 :FTYWSMRPRGAQLGAW T0506 178 :EELMAAAESEATRLNAIKGEAS 2a2jA 152 :ASQQSRPVGSRAQLDNQLAEVT T0506 202 :AVLA 2a2jA 176 :FADQ T0506 206 :GAKTGRWKITS 2a2jA 185 :PPGWGGYRIAP T0506 217 :IDPDGI 2a2jA 199 :EFWQGR T0506 225 :ASASDLARLWFAERVETL 2a2jA 207 :RMHNRIRVANGRLERLQP Number of specific fragments extracted= 12 number of extra gaps= 3 total=6063 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1335446603.pdb -s /var/tmp/to_scwrl_1335446603.seq -o /var/tmp/from_scwrl_1335446603.pdb > /var/tmp/scwrl_1335446603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1335446603.pdb Number of alignments=746 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)L204 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D223 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)L224 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)K243 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)Q244 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 26 :AVRVARDVLHTSRTA 2a2jA 42 :LTLLRRWLNDAQRAG T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 123 :IARYIARYPKAKLYLSLPDTR 2a2jA 135 :IFTYWSMRPRGAQLGAWASQQ T0506 160 :RNASNITP 2a2jA 156 :SRPVGSRA T0506 194 :IKGEASRLAV 2a2jA 164 :QLDNQLAEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPD 2a2jA 185 :PPGWGGYRIAPE T0506 221 :GI 2a2jA 203 :GR T0506 225 :ASASDLARLWFAERVETL 2a2jA 207 :RMHNRIRVANGRLERLQP Number of specific fragments extracted= 13 number of extra gaps= 3 total=6076 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1771172562.pdb -s /var/tmp/to_scwrl_1771172562.seq -o /var/tmp/from_scwrl_1771172562.pdb > /var/tmp/scwrl_1771172562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1771172562.pdb Number of alignments=747 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)L204 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)E237 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)R238 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 26 :AVRVARDVLHTSRTA 2a2jA 42 :LTLLRRWLNDAQRAG T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATN 2a2jA 70 :DGKPVTRSVL T0506 59 :IGIEPDGT 2a2jA 81 :KILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 123 :IARYIARYPKAKLYLS 2a2jA 135 :IFTYWSMRPRGAQLGA T0506 139 :LPDTR 2a2jA 152 :ASQQS T0506 153 :QINGG 2a2jA 157 :RPVGS T0506 174 :L 2a2jA 162 :R T0506 193 :AIKGEASRLAV 2a2jA 163 :AQLDNQLAEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPD 2a2jA 185 :PPGWGGYRIAPE T0506 221 :GI 2a2jA 203 :GR T0506 223 :DLASASDLARLWFA 2a2jA 211 :RIRVANGRLERLQP Number of specific fragments extracted= 15 number of extra gaps= 2 total=6091 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1895253544.pdb -s /var/tmp/to_scwrl_1895253544.seq -o /var/tmp/from_scwrl_1895253544.pdb > /var/tmp/scwrl_1895253544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895253544.pdb Number of alignments=748 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)R200 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)L201 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D229 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)L230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)E240 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)T241 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 12 :R 2a2jA 27 :D T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 123 :IARYIARYPKAKLYL 2a2jA 135 :IFTYWSMRPRGAQLG T0506 168 :ADLRTDLSGA 2a2jA 150 :AWASQQSRPV T0506 186 :SEATRLNAIKGEAS 2a2jA 160 :GSRAQLDNQLAEVT T0506 202 :AVLA 2a2jA 176 :FADQ T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 231 :A 2a2jA 207 :R T0506 232 :RLWF 2a2jA 209 :HNRI T0506 236 :AERV 2a2jA 221 :RLQP Number of specific fragments extracted= 15 number of extra gaps= 3 total=6106 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1507730998.pdb -s /var/tmp/to_scwrl_1507730998.seq -o /var/tmp/from_scwrl_1507730998.pdb > /var/tmp/scwrl_1507730998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1507730998.pdb Number of alignments=749 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)R200 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)L201 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)K243 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)Q244 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 23 :PFEAVRVARDVLHTSRTA 2a2jA 38 :DDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 122 :A 2a2jA 135 :I T0506 124 :ARYIARYPKAKLYLSL 2a2jA 136 :FTYWSMRPRGAQLGAW T0506 170 :LRTDLS 2a2jA 152 :ASQQSR T0506 184 :AESEATRLNAIKGEAS 2a2jA 158 :PVGSRAQLDNQLAEVT T0506 202 :AVLA 2a2jA 176 :FADQ T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 229 :DLARLWFAERVETL 2a2jA 211 :RIRVANGRLERLQP Number of specific fragments extracted= 11 number of extra gaps= 2 total=6117 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_408635641.pdb -s /var/tmp/to_scwrl_408635641.seq -o /var/tmp/from_scwrl_408635641.pdb > /var/tmp/scwrl_408635641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408635641.pdb Number of alignments=750 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)T189 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D229 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 T0506 21 :GAPFEAVRVARDVLHTSRTA 2a2jA 36 :WLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI T0506 124 :ARYIARYPKAKLYLS 2a2jA 136 :FTYWSMRPRGAQLGA T0506 163 :SNITPA 2a2jA 151 :WASQQS T0506 172 :TDLSGAEELMAAAESEA 2a2jA 157 :RPVGSRAQLDNQLAEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 230 :LARLWFAERVETLKQF 2a2jA 207 :RMHNRIRVANGRLERL Number of specific fragments extracted= 10 number of extra gaps= 2 total=6127 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1455928323.pdb -s /var/tmp/to_scwrl_1455928323.seq -o /var/tmp/from_scwrl_1455928323.pdb > /var/tmp/scwrl_1455928323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455928323.pdb Number of alignments=751 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)L204 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)E240 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)T241 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 12 :R 2a2jA 27 :D T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPF 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWY T0506 100 :LTLPRLTLVGRADRIGPDE 2a2jA 116 :QLGRQAHVQGPVSKVSTEE T0506 124 :ARYIARYPKAKLYL 2a2jA 136 :FTYWSMRPRGAQLG T0506 168 :ADLRTDLSGAEELMAAAESE 2a2jA 150 :AWASQQSRPVGSRAQLDNQL T0506 200 :RLAV 2a2jA 170 :AEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 229 :DLARL 2a2jA 210 :NRIRV T0506 234 :WFAERV 2a2jA 219 :LERLQP Number of specific fragments extracted= 12 number of extra gaps= 2 total=6139 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_30737118.pdb -s /var/tmp/to_scwrl_30737118.seq -o /var/tmp/from_scwrl_30737118.pdb > /var/tmp/scwrl_30737118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30737118.pdb Number of alignments=752 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)T189 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)R190 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)E240 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)T241 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 17 :EPSAGAPFEAVRVARDVLHTSRT 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQR T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPW T0506 99 :ALTLPRLTLVGRADRIGPDE 2a2jA 115 :YQLGRQAHVQGPVSKVSTEE T0506 119 :VPLAIARYI 2a2jA 144 :RGAQLGAWA T0506 138 :S 2a2jA 153 :S T0506 169 :DLRTDLSGAEELMAAAESEA 2a2jA 154 :QQSRPVGSRAQLDNQLAEVT T0506 191 :LN 2a2jA 176 :FA T0506 208 :K 2a2jA 178 :D T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 229 :DLARLW 2a2jA 210 :NRIRVA T0506 235 :FAERV 2a2jA 220 :ERLQP Number of specific fragments extracted= 12 number of extra gaps= 2 total=6151 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2061047383.pdb -s /var/tmp/to_scwrl_2061047383.seq -o /var/tmp/from_scwrl_2061047383.pdb > /var/tmp/scwrl_2061047383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061047383.pdb Number of alignments=753 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)L204 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)E240 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)T241 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 12 :R 2a2jA 27 :D T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 122 :AI 2a2jA 135 :IF T0506 125 :RYIARYPK 2a2jA 137 :TYWSMRPR T0506 133 :AKLYLS 2a2jA 146 :AQLGAW T0506 170 :LRTDLSGAEELM 2a2jA 152 :ASQQSRPVGSRA T0506 194 :IKGEASRLAV 2a2jA 164 :QLDNQLAEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 229 :DLARL 2a2jA 210 :NRIRV T0506 234 :WFAERV 2a2jA 219 :LERLQP Number of specific fragments extracted= 14 number of extra gaps= 2 total=6165 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1194350071.pdb -s /var/tmp/to_scwrl_1194350071.seq -o /var/tmp/from_scwrl_1194350071.pdb > /var/tmp/scwrl_1194350071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1194350071.pdb Number of alignments=754 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)L204 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D229 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 Warning: unaligning (T0506)L230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)N206 Warning: unaligning (T0506)E240 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2a2jA)S226 Warning: unaligning (T0506)T241 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2a2jA)S226 T0506 26 :AVRVARDVLHTSRTA 2a2jA 42 :LTLLRRWLNDAQRAG T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGK 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQL T0506 102 :LPRLTLVGRADRIGPDE 2a2jA 118 :GRQAHVQGPVSKVSTEE T0506 123 :IARYIARYPKAKLY 2a2jA 135 :IFTYWSMRPRGAQL T0506 167 :PADLRTDLSGAE 2a2jA 149 :GAWASQQSRPVG T0506 187 :EATRL 2a2jA 161 :SRAQL T0506 196 :GEASRLAV 2a2jA 166 :DNQLAEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 231 :A 2a2jA 207 :R T0506 234 :WFAERV 2a2jA 219 :LERLQP Number of specific fragments extracted= 14 number of extra gaps= 3 total=6179 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_776320017.pdb -s /var/tmp/to_scwrl_776320017.seq -o /var/tmp/from_scwrl_776320017.pdb > /var/tmp/scwrl_776320017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_776320017.pdb Number of alignments=755 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVP 2a2jA 119 :RQAHVQGPVSKVSTEEIF T0506 125 :RYIARY 2a2jA 137 :TYWSMR Number of specific fragments extracted= 6 number of extra gaps= 0 total=6185 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1421174862.pdb -s /var/tmp/to_scwrl_1421174862.seq -o /var/tmp/from_scwrl_1421174862.pdb > /var/tmp/scwrl_1421174862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1421174862.pdb Number of alignments=756 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI Number of specific fragments extracted= 3 number of extra gaps= 0 total=6188 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_346246513.pdb -s /var/tmp/to_scwrl_346246513.seq -o /var/tmp/from_scwrl_346246513.pdb > /var/tmp/scwrl_346246513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_346246513.pdb Number of alignments=757 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI T0506 142 :TRLYRLRTE 2a2jA 136 :FTYWSMRPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=6194 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_536155245.pdb -s /var/tmp/to_scwrl_536155245.seq -o /var/tmp/from_scwrl_536155245.pdb > /var/tmp/scwrl_536155245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536155245.pdb Number of alignments=758 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 23 :PFEAVRVARDVLHTSRTA 2a2jA 39 :DGWLTLLRRWLNDAQRAG T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI T0506 124 :ARYIARYPKA 2a2jA 136 :FTYWSMRPRG Number of specific fragments extracted= 7 number of extra gaps= 0 total=6201 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2145672668.pdb -s /var/tmp/to_scwrl_2145672668.seq -o /var/tmp/from_scwrl_2145672668.pdb > /var/tmp/scwrl_2145672668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2145672668.pdb Number of alignments=759 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATN 2a2jA 70 :DGKPVTRSVL T0506 59 :IGIEPDGT 2a2jA 81 :KILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI T0506 124 :ARYIARYP 2a2jA 136 :FTYWSMRP Number of specific fragments extracted= 6 number of extra gaps= 0 total=6207 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1086623577.pdb -s /var/tmp/to_scwrl_1086623577.seq -o /var/tmp/from_scwrl_1086623577.pdb > /var/tmp/scwrl_1086623577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1086623577.pdb Number of alignments=760 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 T0506 12 :R 2a2jA 27 :D T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVP 2a2jA 119 :RQAHVQGPVSKVSTEEIF T0506 125 :RYIARYP 2a2jA 137 :TYWSMRP Number of specific fragments extracted= 8 number of extra gaps= 1 total=6215 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_523493102.pdb -s /var/tmp/to_scwrl_523493102.seq -o /var/tmp/from_scwrl_523493102.pdb > /var/tmp/scwrl_523493102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_523493102.pdb Number of alignments=761 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDE 2a2jA 119 :RQAHVQGPVSKVSTEE T0506 123 :IARYIARYPKAK 2a2jA 135 :IFTYWSMRPRGA Number of specific fragments extracted= 5 number of extra gaps= 0 total=6220 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1062959072.pdb -s /var/tmp/to_scwrl_1062959072.seq -o /var/tmp/from_scwrl_1062959072.pdb > /var/tmp/scwrl_1062959072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1062959072.pdb Number of alignments=762 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEV 2a2jA 119 :RQAHVQGPVSKVSTEEI Number of specific fragments extracted= 3 number of extra gaps= 0 total=6223 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_770371912.pdb -s /var/tmp/to_scwrl_770371912.seq -o /var/tmp/from_scwrl_770371912.pdb > /var/tmp/scwrl_770371912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770371912.pdb Number of alignments=763 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)L204 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)A205 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 Warning: unaligning (T0506)D229 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)N206 T0506 12 :R 2a2jA 27 :D T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPF 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWY T0506 100 :LTLPRLTLVGRADRIGPDEV 2a2jA 116 :QLGRQAHVQGPVSKVSTEEI T0506 124 :ARYIARYPKAKLYL 2a2jA 136 :FTYWSMRPRGAQLG T0506 168 :ADLRTDLSGAEELMAAAESE 2a2jA 150 :AWASQQSRPVGSRAQLDNQL T0506 200 :RLAV 2a2jA 170 :AEVT T0506 206 :GAK 2a2jA 176 :FAD T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR Number of specific fragments extracted= 10 number of extra gaps= 2 total=6233 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1671287248.pdb -s /var/tmp/to_scwrl_1671287248.seq -o /var/tmp/from_scwrl_1671287248.pdb > /var/tmp/scwrl_1671287248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1671287248.pdb Number of alignments=764 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 Warning: unaligning (T0506)T189 because of BadResidue code BAD_PEPTIDE in next template residue (2a2jA)R175 Warning: unaligning (T0506)R190 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)R175 T0506 12 :R 2a2jA 27 :D T0506 17 :EPSAGAPFEAVRVARDVLHTSRT 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQR T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPW T0506 99 :ALTLPRLTLVGRADRIGPDE 2a2jA 115 :YQLGRQAHVQGPVSKVSTEE T0506 119 :VPLAIARYI 2a2jA 144 :RGAQLGAWA T0506 138 :S 2a2jA 153 :S T0506 169 :DLRTDLSGAEELMAAAESEA 2a2jA 154 :QQSRPVGSRAQLDNQLAEVT T0506 191 :LN 2a2jA 176 :FA T0506 208 :K 2a2jA 178 :D T0506 209 :TGRWKITSIDPDGIDLASAS 2a2jA 185 :PPGWGGYRIAPEIVEFWQGR T0506 229 :DLARL 2a2jA 208 :MHNRI Number of specific fragments extracted= 12 number of extra gaps= 1 total=6245 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1282552008.pdb -s /var/tmp/to_scwrl_1282552008.seq -o /var/tmp/from_scwrl_1282552008.pdb > /var/tmp/scwrl_1282552008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282552008.pdb Number of alignments=765 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2a2jA)P24 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2jA)K26 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2jA)K26 Warning: unaligning (T0506)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a2jA)G30 Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 T0506 12 :R 2a2jA 27 :D T0506 17 :EPSAGAPFEAVRVARDVLHTSRTA 2a2jA 32 :LDFDWLDDGWLTLLRRWLNDAQRA T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2a2jA 70 :DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLG T0506 103 :PRLTLVGRADRIGPDEVP 2a2jA 119 :RQAHVQGPVSKVSTEEIF T0506 125 :RYIARYP 2a2jA 137 :TYWSMRP Number of specific fragments extracted= 6 number of extra gaps= 0 total=6251 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_825335960.pdb -s /var/tmp/to_scwrl_825335960.seq -o /var/tmp/from_scwrl_825335960.pdb > /var/tmp/scwrl_825335960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_825335960.pdb Number of alignments=766 # 2a2jA read from all-align.a2m # found chain 2a2jA in template set Warning: unaligning (T0506)K15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a2jA)G30 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (2a2jA)D31 T0506 17 :EPSAGAPFEAVRVA 2a2jA 32 :LDFDWLDDGWLTLL T0506 31 :RDVLHTSRTA 2a2jA 47 :RWLNDAQRAG T0506 41 :ALATLD 2a2jA 64 :VLATVA T0506 49 :SGYPYTTATNI 2a2jA 70 :DGKPVTRSVLC T0506 60 :GIEPDGT 2a2jA 82 :ILDESGV T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGK 2a2jA 89 :AFFTSYTSAKGEQLAVTPYASATFPWYQL T0506 102 :LPRLTLVGRADRIGPDE 2a2jA 118 :GRQAHVQGPVSKVSTEE T0506 123 :IARYIARYP 2a2jA 135 :IFTYWSMRP Number of specific fragments extracted= 8 number of extra gaps= 0 total=6259 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2111888158.pdb -s /var/tmp/to_scwrl_2111888158.seq -o /var/tmp/from_scwrl_2111888158.pdb > /var/tmp/scwrl_2111888158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2111888158.pdb Number of alignments=767 2aq6A expands to /projects/compbio/data/pdb/2aq6.pdb.gz 2aq6A:# 2aq6A read from all-align.a2m # adding 2aq6A to template set # found chain 2aq6A in template set Warning: unaligning (T0506)R171 because last residue in template chain is (2aq6A)R147 T0506 24 :FEA 2aq6A 6 :FDD T0506 29 :VARDVLHTSRTAALATLDP 2aq6A 9 :KLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2aq6A 28 :DGRPQLSNVQYHFDPRKLLIQVSIAE T0506 75 :TLHARNMETDARISVTLAPFGK 2aq6A 55 :RAKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPD 2aq6A 77 :WSYAVAEGTAQLTPPA T0506 118 :EVPLAIARYIARYPK 2aq6A 95 :PDDDTVEALIALYRN T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPARNASN 2aq6A 111 :AGEHSDWDDYRQAMVTDRRVLLTLPISHVYGL T0506 167 :PADL 2aq6A 143 :PPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6267 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_94578867.pdb -s /var/tmp/to_scwrl_94578867.seq -o /var/tmp/from_scwrl_94578867.pdb > /var/tmp/scwrl_94578867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94578867.pdb Number of alignments=768 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 28 :RVARDVLHTSRTAALATLDP 2aq6A 8 :DKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2aq6A 28 :DGRPQLSNVQYHFDPRKLLIQVSIAE T0506 75 :TLHARNMETDARISVTLAPFGK 2aq6A 55 :RAKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPD 2aq6A 77 :WSYAVAEGTAQLTPPA T0506 118 :EVPLAIARYIARYPK 2aq6A 95 :PDDDTVEALIALYRN T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPARNASN 2aq6A 111 :AGEHSDWDDYRQAMVTDRRVLLTLPISHVYGL T0506 169 :DLRT 2aq6A 143 :PPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6274 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1679553871.pdb -s /var/tmp/to_scwrl_1679553871.seq -o /var/tmp/from_scwrl_1679553871.pdb > /var/tmp/scwrl_1679553871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1679553871.pdb Number of alignments=769 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 31 :RDVLHTSRTAALATLDP 2aq6A 11 :LAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2aq6A 28 :DGRPQLSNVQYHFDPRKLLIQVSIAE T0506 75 :TLHARNMETDARISVTLAPFGK 2aq6A 55 :RAKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPD 2aq6A 77 :WSYAVAEGTAQLTPPA T0506 118 :EVPLAIARYIARYPK 2aq6A 95 :PDDDTVEALIALYRN T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPAR 2aq6A 111 :AGEHSDWDDYRQAMVTDRRVLLTLPISH Number of specific fragments extracted= 6 number of extra gaps= 0 total=6280 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_541974585.pdb -s /var/tmp/to_scwrl_541974585.seq -o /var/tmp/from_scwrl_541974585.pdb > /var/tmp/scwrl_541974585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541974585.pdb Number of alignments=770 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 31 :RDVLHTSRTAALATLDP 2aq6A 11 :LAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2aq6A 28 :DGRPQLSNVQYHFDPRKLLIQVSIAE T0506 75 :TLHARNMETDARISVTLAPFGK 2aq6A 55 :RAKTRNLRRDPRASILVDADDG T0506 102 :LPRLTLVGRADRIGPD 2aq6A 77 :WSYAVAEGTAQLTPPA T0506 118 :EVPLAIARYIARYPK 2aq6A 95 :PDDDTVEALIALYRN T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPAR 2aq6A 111 :AGEHSDWDDYRQAMVTDRRVLLTLPISH Number of specific fragments extracted= 6 number of extra gaps= 0 total=6286 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_422883305.pdb -s /var/tmp/to_scwrl_422883305.seq -o /var/tmp/from_scwrl_422883305.pdb > /var/tmp/scwrl_422883305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422883305.pdb Number of alignments=771 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)D169 because last residue in template chain is (2aq6A)R147 T0506 1 :MLD 2aq6A 5 :VFD T0506 28 :RVARDVLHTSRTAALATLDP 2aq6A 8 :DKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGT 2aq6A 28 :DGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPK 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAG T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNASNITPA 2aq6A 113 :EHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 5 number of extra gaps= 0 total=6291 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1698207723.pdb -s /var/tmp/to_scwrl_1698207723.seq -o /var/tmp/from_scwrl_1698207723.pdb > /var/tmp/scwrl_1698207723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1698207723.pdb Number of alignments=772 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 2 :LD 2aq6A 6 :FD T0506 28 :RVARDVLHTSRTAALATLDP 2aq6A 8 :DKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGT 2aq6A 28 :DGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADD T0506 101 :TLPRLTLVGRADRIGPDEVPLAI 2aq6A 76 :GWSYAVAEGTAQLTPPAAAPDDD T0506 124 :ARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNIT 2aq6A 102 :ALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPP Number of specific fragments extracted= 6 number of extra gaps= 0 total=6297 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_564527933.pdb -s /var/tmp/to_scwrl_564527933.seq -o /var/tmp/from_scwrl_564527933.pdb > /var/tmp/scwrl_564527933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_564527933.pdb Number of alignments=773 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 30 :ARDVLHTSRTAALATLDP 2aq6A 10 :LLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGT 2aq6A 28 :DGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPK 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAG T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPAR 2aq6A 113 :EHSDWDDYRQAMVTDRRVLLTLPISH Number of specific fragments extracted= 4 number of extra gaps= 0 total=6301 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2050030351.pdb -s /var/tmp/to_scwrl_2050030351.seq -o /var/tmp/from_scwrl_2050030351.pdb > /var/tmp/scwrl_2050030351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050030351.pdb Number of alignments=774 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 31 :RDVLHTSRTAALATLDP 2aq6A 11 :LAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGT 2aq6A 28 :DGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADD T0506 101 :TLPRLTLVGRADRIGPDEVPLAI 2aq6A 76 :GWSYAVAEGTAQLTPPAAAPDDD T0506 124 :ARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR 2aq6A 102 :ALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISH Number of specific fragments extracted= 5 number of extra gaps= 0 total=6306 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1964017261.pdb -s /var/tmp/to_scwrl_1964017261.seq -o /var/tmp/from_scwrl_1964017261.pdb > /var/tmp/scwrl_1964017261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964017261.pdb Number of alignments=775 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLY 2aq6A 54 :PRAKTRNLRRDPRASILVDADDGWSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=6307 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1916257072.pdb -s /var/tmp/to_scwrl_1916257072.seq -o /var/tmp/from_scwrl_1916257072.pdb > /var/tmp/scwrl_1916257072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916257072.pdb Number of alignments=776 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 123 :IARYIARYPKAKLYLSLPDTRLYR 2aq6A 57 :KTRNLRRDPRASILVDADDGWSYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=6308 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1237993308.pdb -s /var/tmp/to_scwrl_1237993308.seq -o /var/tmp/from_scwrl_1237993308.pdb > /var/tmp/scwrl_1237993308.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1237993308.pdb Number of alignments=777 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDE 2aq6A 96 :DDD T0506 119 :VPLAIARYIA 2aq6A 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6316 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1587706177.pdb -s /var/tmp/to_scwrl_1587706177.seq -o /var/tmp/from_scwrl_1587706177.pdb > /var/tmp/scwrl_1587706177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1587706177.pdb Number of alignments=778 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 27 :VR 2aq6A 6 :FD T0506 29 :VARDVLHTSRTAALATLD 2aq6A 9 :KLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :P 2aq6A 98 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 2aq6A 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6324 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1664026970.pdb -s /var/tmp/to_scwrl_1664026970.seq -o /var/tmp/from_scwrl_1664026970.pdb > /var/tmp/scwrl_1664026970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664026970.pdb Number of alignments=779 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 27 :V 2aq6A 6 :F T0506 28 :RVARDVLHTSRTAALATLD 2aq6A 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :P 2aq6A 97 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 2aq6A 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6332 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_598240660.pdb -s /var/tmp/to_scwrl_598240660.seq -o /var/tmp/from_scwrl_598240660.pdb > /var/tmp/scwrl_598240660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_598240660.pdb Number of alignments=780 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 27 :V 2aq6A 6 :F T0506 28 :RVARDVLHTSRTAALATLD 2aq6A 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 2aq6A 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 2aq6A 127 :DRRVLLTLPISHVYGLP T0506 158 :PA 2aq6A 145 :GM Number of specific fragments extracted= 9 number of extra gaps= 0 total=6341 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1996341818.pdb -s /var/tmp/to_scwrl_1996341818.seq -o /var/tmp/from_scwrl_1996341818.pdb > /var/tmp/scwrl_1996341818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1996341818.pdb Number of alignments=781 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 27 :V 2aq6A 6 :F T0506 28 :RVARDVLHTSRTAALATLD 2aq6A 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 2aq6A 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6349 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_972471647.pdb -s /var/tmp/to_scwrl_972471647.seq -o /var/tmp/from_scwrl_972471647.pdb > /var/tmp/scwrl_972471647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972471647.pdb Number of alignments=782 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6356 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_628977778.pdb -s /var/tmp/to_scwrl_628977778.seq -o /var/tmp/from_scwrl_628977778.pdb > /var/tmp/scwrl_628977778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628977778.pdb Number of alignments=783 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6363 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1909905555.pdb -s /var/tmp/to_scwrl_1909905555.seq -o /var/tmp/from_scwrl_1909905555.pdb > /var/tmp/scwrl_1909905555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909905555.pdb Number of alignments=784 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6370 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_19338071.pdb -s /var/tmp/to_scwrl_19338071.seq -o /var/tmp/from_scwrl_19338071.pdb > /var/tmp/scwrl_19338071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_19338071.pdb Number of alignments=785 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDE 2aq6A 96 :DDD T0506 119 :VPLAIARYIA 2aq6A 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6378 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1405297794.pdb -s /var/tmp/to_scwrl_1405297794.seq -o /var/tmp/from_scwrl_1405297794.pdb > /var/tmp/scwrl_1405297794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1405297794.pdb Number of alignments=786 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :P 2aq6A 96 :D T0506 117 :DEVPLAIARYIAR 2aq6A 98 :DTVEALIALYRNI T0506 130 :YPKAKLYLSL 2aq6A 114 :HSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6386 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1183596770.pdb -s /var/tmp/to_scwrl_1183596770.seq -o /var/tmp/from_scwrl_1183596770.pdb > /var/tmp/scwrl_1183596770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1183596770.pdb Number of alignments=787 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDE 2aq6A 96 :DDD T0506 119 :VPLAIARYIA 2aq6A 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6394 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_365584584.pdb -s /var/tmp/to_scwrl_365584584.seq -o /var/tmp/from_scwrl_365584584.pdb > /var/tmp/scwrl_365584584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_365584584.pdb Number of alignments=788 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)R160 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQINGGPA 2aq6A 127 :DRRVLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6401 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1941453039.pdb -s /var/tmp/to_scwrl_1941453039.seq -o /var/tmp/from_scwrl_1941453039.pdb > /var/tmp/scwrl_1941453039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1941453039.pdb Number of alignments=789 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 28 :RVARDVLHTSRTAALATLD 2aq6A 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDE 2aq6A 96 :DDD T0506 119 :VPLAIARYIA 2aq6A 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 2aq6A 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 8 number of extra gaps= 0 total=6409 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1181785792.pdb -s /var/tmp/to_scwrl_1181785792.seq -o /var/tmp/from_scwrl_1181785792.pdb > /var/tmp/scwrl_1181785792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1181785792.pdb Number of alignments=790 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 28 :RVARDVLHTSRTAALATLD 2aq6A 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :P 2aq6A 98 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 2aq6A 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 2aq6A 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=6416 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1452208161.pdb -s /var/tmp/to_scwrl_1452208161.seq -o /var/tmp/from_scwrl_1452208161.pdb > /var/tmp/scwrl_1452208161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452208161.pdb Number of alignments=791 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 28 :RVARDVLHTSRTAALATLD 2aq6A 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :P 2aq6A 97 :D T0506 117 :DEVPLAIARYIARYPKAKLYLSL 2aq6A 101 :EALIALYRNIAGEHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 2aq6A 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=6423 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_317462495.pdb -s /var/tmp/to_scwrl_317462495.seq -o /var/tmp/from_scwrl_317462495.pdb > /var/tmp/scwrl_317462495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_317462495.pdb Number of alignments=792 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 2aq6A 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 2aq6A 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=6430 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_97261217.pdb -s /var/tmp/to_scwrl_97261217.seq -o /var/tmp/from_scwrl_97261217.pdb > /var/tmp/scwrl_97261217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_97261217.pdb Number of alignments=793 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEP 2aq6A 27 :HDGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 2aq6A 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=6437 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_75096426.pdb -s /var/tmp/to_scwrl_75096426.seq -o /var/tmp/from_scwrl_75096426.pdb > /var/tmp/scwrl_75096426.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75096426.pdb Number of alignments=794 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 2aq6A 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=6444 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1988749743.pdb -s /var/tmp/to_scwrl_1988749743.seq -o /var/tmp/from_scwrl_1988749743.pdb > /var/tmp/scwrl_1988749743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1988749743.pdb Number of alignments=795 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 2aq6A 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 7 number of extra gaps= 0 total=6451 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1379813226.pdb -s /var/tmp/to_scwrl_1379813226.seq -o /var/tmp/from_scwrl_1379813226.pdb > /var/tmp/scwrl_1379813226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1379813226.pdb Number of alignments=796 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 28 :RVARDVLHTSRTAALATLD 2aq6A 8 :DKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQIN 2aq6A 127 :DRRVLLTLPISHVYGL Number of specific fragments extracted= 7 number of extra gaps= 0 total=6458 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_900432386.pdb -s /var/tmp/to_scwrl_900432386.seq -o /var/tmp/from_scwrl_900432386.pdb > /var/tmp/scwrl_900432386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900432386.pdb Number of alignments=797 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 27 :VRVARDVLHTSRTAALATLD 2aq6A 7 :DDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDE 2aq6A 96 :DDD T0506 119 :VPLAIARYIA 2aq6A 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 2aq6A 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 8 number of extra gaps= 0 total=6466 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1953154254.pdb -s /var/tmp/to_scwrl_1953154254.seq -o /var/tmp/from_scwrl_1953154254.pdb > /var/tmp/scwrl_1953154254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1953154254.pdb Number of alignments=798 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 27 :VRVARDVLHTSRTAALATLD 2aq6A 7 :DDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :P 2aq6A 96 :D T0506 117 :DEVPLAIARYIAR 2aq6A 98 :DTVEALIALYRNI T0506 130 :YPKAKLYLSL 2aq6A 114 :HSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 2aq6A 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 8 number of extra gaps= 0 total=6474 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1474392093.pdb -s /var/tmp/to_scwrl_1474392093.seq -o /var/tmp/from_scwrl_1474392093.pdb > /var/tmp/scwrl_1474392093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474392093.pdb Number of alignments=799 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDE 2aq6A 96 :DDD T0506 119 :VPLAIARYIA 2aq6A 100 :VEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 2aq6A 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 8 number of extra gaps= 0 total=6482 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_432502610.pdb -s /var/tmp/to_scwrl_432502610.seq -o /var/tmp/from_scwrl_432502610.pdb > /var/tmp/scwrl_432502610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_432502610.pdb Number of alignments=800 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 26 :AVRVARDVLHTSRTAALATLD 2aq6A 6 :FDDKLLAVISGNSIGVLATIK T0506 48 :VSGYPYTTATNIGIEPDGT 2aq6A 27 :HDGRPQLSNVQYHFDPRKL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 47 :IQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIA 2aq6A 97 :DDTVEALIALYRN T0506 129 :RYPKAKLYLSL 2aq6A 113 :EHSDWDDYRQA T0506 140 :PDTRLYRLRTEGVQING 2aq6A 127 :DRRVLLTLPISHVYGLP Number of specific fragments extracted= 7 number of extra gaps= 0 total=6489 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_347645192.pdb -s /var/tmp/to_scwrl_347645192.seq -o /var/tmp/from_scwrl_347645192.pdb > /var/tmp/scwrl_347645192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347645192.pdb Number of alignments=801 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2aq6A)V5 T0506 6 :PPVITP 2aq6A 6 :FDDKLL T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTR 2aq6A 79 :YAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAM T0506 226 :SASDL 2aq6A 125 :VTDRR T0506 233 :LWFAERVETLKQFEKAL 2aq6A 130 :VLLTLPISHVYGLPPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6496 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1897275399.pdb -s /var/tmp/to_scwrl_1897275399.seq -o /var/tmp/from_scwrl_1897275399.pdb > /var/tmp/scwrl_1897275399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1897275399.pdb Number of alignments=802 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)K213 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY T0506 188 :ATRLNAIKGEASRLAVLAGAK 2aq6A 121 :RQAMVTDRRVLLTLPISHVYG T0506 209 :TGRW 2aq6A 143 :PPGM Number of specific fragments extracted= 6 number of extra gaps= 0 total=6502 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2130710334.pdb -s /var/tmp/to_scwrl_2130710334.seq -o /var/tmp/from_scwrl_2130710334.pdb > /var/tmp/scwrl_2130710334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130710334.pdb Number of alignments=803 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)A250 because last residue in template chain is (2aq6A)R147 T0506 6 :PPVITP 2aq6A 6 :FDDKLL T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTR 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAM T0506 164 :NI 2aq6A 125 :VT T0506 194 :IKGEASRLAVLAGAK 2aq6A 127 :DRRVLLTLPISHVYG T0506 245 :FEKAL 2aq6A 142 :LPPGM Number of specific fragments extracted= 8 number of extra gaps= 0 total=6510 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_912173126.pdb -s /var/tmp/to_scwrl_912173126.seq -o /var/tmp/from_scwrl_912173126.pdb > /var/tmp/scwrl_912173126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912173126.pdb Number of alignments=804 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)E246 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQING 2aq6A 126 :TDRRVLLTLPISHVYGLP T0506 243 :KQF 2aq6A 144 :PGM Number of specific fragments extracted= 6 number of extra gaps= 0 total=6516 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1799822103.pdb -s /var/tmp/to_scwrl_1799822103.seq -o /var/tmp/from_scwrl_1799822103.pdb > /var/tmp/scwrl_1799822103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1799822103.pdb Number of alignments=805 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)D223 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPDE 2aq6A 78 :SYAVAEGTAQLTPPAA T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQING 2aq6A 126 :TDRRVLLTLPISHVYGLP T0506 220 :DGI 2aq6A 144 :PGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6523 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1947243948.pdb -s /var/tmp/to_scwrl_1947243948.seq -o /var/tmp/from_scwrl_1947243948.pdb > /var/tmp/scwrl_1947243948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1947243948.pdb Number of alignments=806 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 2aq6A 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 2aq6A 126 :TDRRVLLTLPISHVYGLPP T0506 221 :GI 2aq6A 145 :GM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6530 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_680946551.pdb -s /var/tmp/to_scwrl_680946551.seq -o /var/tmp/from_scwrl_680946551.pdb > /var/tmp/scwrl_680946551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_680946551.pdb Number of alignments=807 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 2aq6A 79 :YAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 2aq6A 126 :TDRRVLLTLPISHVYGLPP T0506 221 :GI 2aq6A 145 :GM Number of specific fragments extracted= 6 number of extra gaps= 0 total=6536 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_890331765.pdb -s /var/tmp/to_scwrl_890331765.seq -o /var/tmp/from_scwrl_890331765.pdb > /var/tmp/scwrl_890331765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_890331765.pdb Number of alignments=808 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)K213 because last residue in template chain is (2aq6A)R147 T0506 6 :PPVITP 2aq6A 6 :FDDKLL T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY T0506 188 :ATRLNAIKGEASRLAVLAGAK 2aq6A 121 :RQAMVTDRRVLLTLPISHVYG T0506 209 :TGRW 2aq6A 143 :PPGM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6543 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1387466478.pdb -s /var/tmp/to_scwrl_1387466478.seq -o /var/tmp/from_scwrl_1387466478.pdb > /var/tmp/scwrl_1387466478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387466478.pdb Number of alignments=809 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2aq6A 28 :DGRPQLSNVQYHFDPRKLLIQVSI T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2aq6A 53 :EPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 117 :DE 2aq6A 96 :DD T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQIN 2aq6A 126 :TDRRVLLTLPISHVYGL T0506 173 :DL 2aq6A 143 :PP T0506 176 :GA 2aq6A 145 :GM Number of specific fragments extracted= 9 number of extra gaps= 0 total=6552 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_197489874.pdb -s /var/tmp/to_scwrl_197489874.seq -o /var/tmp/from_scwrl_197489874.pdb > /var/tmp/scwrl_197489874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_197489874.pdb Number of alignments=810 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2aq6A)V5 T0506 22 :APF 2aq6A 6 :FDD T0506 29 :VARDVLHTSRTAALATLDP 2aq6A 9 :KLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIAR 2aq6A 97 :DDTVEALIALYRNI T0506 171 :RTDLSGAEELMAAAES 2aq6A 111 :AGEHSDWDDYRQAMVT T0506 228 :SDLARLWFAER 2aq6A 127 :DRRVLLTLPIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=6560 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1488572424.pdb -s /var/tmp/to_scwrl_1488572424.seq -o /var/tmp/from_scwrl_1488572424.pdb > /var/tmp/scwrl_1488572424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1488572424.pdb Number of alignments=811 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPF 2aq6A 28 :DGRPQLSNVQYHFDPRKLLI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 49 :VSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 2aq6A 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 2aq6A 126 :TDRRVLLTLPISHVYGLPP T0506 221 :GI 2aq6A 145 :GM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6567 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1236324650.pdb -s /var/tmp/to_scwrl_1236324650.seq -o /var/tmp/from_scwrl_1236324650.pdb > /var/tmp/scwrl_1236324650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1236324650.pdb Number of alignments=812 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2aq6A)V5 Warning: unaligning (T0506)D223 because last residue in template chain is (2aq6A)R147 T0506 26 :AVRVARDVLHTSRTAALATLDP 2aq6A 6 :FDDKLLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPD 2aq6A 79 :YAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQINGG 2aq6A 126 :TDRRVLLTLPISHVYGLPP T0506 221 :GI 2aq6A 145 :GM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6574 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1169961520.pdb -s /var/tmp/to_scwrl_1169961520.seq -o /var/tmp/from_scwrl_1169961520.pdb > /var/tmp/scwrl_1169961520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1169961520.pdb Number of alignments=813 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 33 :VLHTSRTAALATLDP 2aq6A 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 2aq6A 79 :YAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=6578 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2117550202.pdb -s /var/tmp/to_scwrl_2117550202.seq -o /var/tmp/from_scwrl_2117550202.pdb > /var/tmp/scwrl_2117550202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117550202.pdb Number of alignments=814 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 33 :VLHTSRTAALATLDP 2aq6A 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=6582 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_998746559.pdb -s /var/tmp/to_scwrl_998746559.seq -o /var/tmp/from_scwrl_998746559.pdb > /var/tmp/scwrl_998746559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_998746559.pdb Number of alignments=815 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 33 :VLHTSRTAALATLDP 2aq6A 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDY Number of specific fragments extracted= 4 number of extra gaps= 0 total=6586 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1189299591.pdb -s /var/tmp/to_scwrl_1189299591.seq -o /var/tmp/from_scwrl_1189299591.pdb > /var/tmp/scwrl_1189299591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189299591.pdb Number of alignments=816 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD Number of specific fragments extracted= 4 number of extra gaps= 0 total=6590 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1375364350.pdb -s /var/tmp/to_scwrl_1375364350.seq -o /var/tmp/from_scwrl_1375364350.pdb > /var/tmp/scwrl_1375364350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375364350.pdb Number of alignments=817 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPDE 2aq6A 78 :SYAVAEGTAQLTPPAA T0506 119 :VPLAIARYIAR 2aq6A 100 :VEALIALYRNI Number of specific fragments extracted= 5 number of extra gaps= 0 total=6595 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_34859682.pdb -s /var/tmp/to_scwrl_34859682.seq -o /var/tmp/from_scwrl_34859682.pdb > /var/tmp/scwrl_34859682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34859682.pdb Number of alignments=818 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 2aq6A 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD Number of specific fragments extracted= 5 number of extra gaps= 0 total=6600 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1554884176.pdb -s /var/tmp/to_scwrl_1554884176.seq -o /var/tmp/from_scwrl_1554884176.pdb > /var/tmp/scwrl_1554884176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554884176.pdb Number of alignments=819 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 2aq6A 79 :YAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQ 2aq6A 126 :TDRRVLLTLPISHVY Number of specific fragments extracted= 5 number of extra gaps= 0 total=6605 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1169333742.pdb -s /var/tmp/to_scwrl_1169333742.seq -o /var/tmp/from_scwrl_1169333742.pdb > /var/tmp/scwrl_1169333742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1169333742.pdb Number of alignments=820 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 33 :VLHTSRTAALATLDP 2aq6A 13 :VISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADD T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLY 2aq6A 77 :WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDW Number of specific fragments extracted= 4 number of extra gaps= 0 total=6609 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1216645474.pdb -s /var/tmp/to_scwrl_1216645474.seq -o /var/tmp/from_scwrl_1216645474.pdb > /var/tmp/scwrl_1216645474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1216645474.pdb Number of alignments=821 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2aq6A 28 :DGRPQLSNVQYHFDPRKLLIQVSI T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2aq6A 53 :EPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 117 :DE 2aq6A 96 :DD T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQ 2aq6A 126 :TDRRVLLTLPISHVY Number of specific fragments extracted= 7 number of extra gaps= 0 total=6616 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_859608691.pdb -s /var/tmp/to_scwrl_859608691.seq -o /var/tmp/from_scwrl_859608691.pdb > /var/tmp/scwrl_859608691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_859608691.pdb Number of alignments=822 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 30 :ARDVLHTSRTAALATLDP 2aq6A 10 :LLAVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIG 2aq6A 78 :SYAVAEGTAQLTP T0506 116 :PDEVPLAIARYIAR 2aq6A 97 :DDTVEALIALYRNI T0506 171 :RTDLSGAEELMAAAES 2aq6A 111 :AGEHSDWDDYRQAMVT T0506 228 :SDLARLWFA 2aq6A 127 :DRRVLLTLP Number of specific fragments extracted= 7 number of extra gaps= 0 total=6623 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1486796237.pdb -s /var/tmp/to_scwrl_1486796237.seq -o /var/tmp/from_scwrl_1486796237.pdb > /var/tmp/scwrl_1486796237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1486796237.pdb Number of alignments=823 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEPDGTPF 2aq6A 28 :DGRPQLSNVQYHFDPRKLLI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 2aq6A 49 :VSIAEPRAKTRNLRRDPRASILVDADDGW T0506 103 :PRLTLVGRADRIGPD 2aq6A 78 :SYAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQI 2aq6A 126 :TDRRVLLTLPISHVYG Number of specific fragments extracted= 6 number of extra gaps= 0 total=6629 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1313906692.pdb -s /var/tmp/to_scwrl_1313906692.seq -o /var/tmp/from_scwrl_1313906692.pdb > /var/tmp/scwrl_1313906692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1313906692.pdb Number of alignments=824 # 2aq6A read from all-align.a2m # found chain 2aq6A in template set T0506 32 :DVLHTSRTAALATLDP 2aq6A 12 :AVISGNSIGVLATIKH T0506 49 :SGYPYTTATNIGIEP 2aq6A 28 :DGRPQLSNVQYHFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 2aq6A 44 :KLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWS T0506 104 :RLTLVGRADRIGPD 2aq6A 79 :YAVAEGTAQLTPPA T0506 119 :VPLAIARYIARYPKAKLYLS 2aq6A 100 :VEALIALYRNIAGEHSDWDD T0506 139 :LPDTRLYRLRTEGVQ 2aq6A 126 :TDRRVLLTLPISHVY Number of specific fragments extracted= 6 number of extra gaps= 0 total=6635 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_934705118.pdb -s /var/tmp/to_scwrl_934705118.seq -o /var/tmp/from_scwrl_934705118.pdb > /var/tmp/scwrl_934705118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_934705118.pdb Number of alignments=825 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 3 :DVAPP 2arzA 3 :VEAAK T0506 29 :VARDVLHTSRTAALATLDP 2arzA 8 :NARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADLR 2arzA 141 :IHWLAAERVP T0506 173 :DLSGAEELMAAAESEATRLNAIKGEASRLAV 2arzA 151 :LANPFAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 10 number of extra gaps= 5 total=6645 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1328062334.pdb -s /var/tmp/to_scwrl_1328062334.seq -o /var/tmp/from_scwrl_1328062334.pdb > /var/tmp/scwrl_1328062334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328062334.pdb Number of alignments=826 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 7 :P 2arzA 4 :E T0506 9 :IT 2arzA 5 :AA T0506 29 :VARDVLHTSRTAALATLDP 2arzA 8 :NARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADLR 2arzA 141 :IHWLAAERVP T0506 174 :LSG 2arzA 152 :ANP T0506 179 :ELMAAAESEATRLNAIKGEASR 2arzA 155 :FAGEAERGMVEHMNSDHAAAIA T0506 201 :LAV 2arzA 179 :VEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 13 number of extra gaps= 5 total=6658 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_546236272.pdb -s /var/tmp/to_scwrl_546236272.seq -o /var/tmp/from_scwrl_546236272.pdb > /var/tmp/scwrl_546236272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546236272.pdb Number of alignments=827 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 30 :ARDVLHTSRTAALATLDP 2arzA 9 :ARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADLR 2arzA 141 :IHWLAAERVP T0506 173 :DLSGAEELMAAAESEATRLNAIKGEASRLAV 2arzA 151 :LANPFAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 9 number of extra gaps= 5 total=6667 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1835137503.pdb -s /var/tmp/to_scwrl_1835137503.seq -o /var/tmp/from_scwrl_1835137503.pdb > /var/tmp/scwrl_1835137503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1835137503.pdb Number of alignments=828 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 29 :VARDVLHTSRTAALATLDP 2arzA 8 :NARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADLR 2arzA 141 :IHWLAAERVP T0506 174 :LSG 2arzA 152 :ANP T0506 179 :ELMAAAESEATRLNAIKGEASR 2arzA 155 :FAGEAERGMVEHMNSDHAAAIA T0506 201 :LAV 2arzA 179 :VEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 11 number of extra gaps= 5 total=6678 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1133732941.pdb -s /var/tmp/to_scwrl_1133732941.seq -o /var/tmp/from_scwrl_1133732941.pdb > /var/tmp/scwrl_1133732941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1133732941.pdb Number of alignments=829 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2arzA 3 :VEAAKNARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNA 2arzA 123 :DFWVLQPVQWRFIGGFGAIH T0506 165 :ITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAV 2arzA 143 :WLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=6686 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2020628365.pdb -s /var/tmp/to_scwrl_2020628365.seq -o /var/tmp/from_scwrl_2020628365.pdb > /var/tmp/scwrl_2020628365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2020628365.pdb Number of alignments=830 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2arzA 3 :VEAAKNARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNA 2arzA 123 :DFWVLQPVQWRFIGGFGAIH T0506 165 :ITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAV 2arzA 143 :WLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=6694 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_120156467.pdb -s /var/tmp/to_scwrl_120156467.seq -o /var/tmp/from_scwrl_120156467.pdb > /var/tmp/scwrl_120156467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_120156467.pdb Number of alignments=831 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2arzA 4 :EAAKNARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNA 2arzA 123 :DFWVLQPVQWRFIGGFGAIH T0506 165 :ITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAV 2arzA 143 :WLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=6702 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1481378134.pdb -s /var/tmp/to_scwrl_1481378134.seq -o /var/tmp/from_scwrl_1481378134.pdb > /var/tmp/scwrl_1481378134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481378134.pdb Number of alignments=832 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2arzA 4 :EAAKNARELLLKEYRAVLSTHSK T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 28 :WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNA 2arzA 123 :DFWVLQPVQWRFIGGFGAIH T0506 165 :ITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAV 2arzA 143 :WLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 8 number of extra gaps= 5 total=6710 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1770420117.pdb -s /var/tmp/to_scwrl_1770420117.seq -o /var/tmp/from_scwrl_1770420117.pdb > /var/tmp/scwrl_1770420117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770420117.pdb Number of alignments=833 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 T0506 25 :EAVRVARDVLHTSRTAALATLD 2arzA 4 :EAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGG 2arzA 123 :DFWVLQPVQWRFIGG Number of specific fragments extracted= 4 number of extra gaps= 2 total=6714 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_103383154.pdb -s /var/tmp/to_scwrl_103383154.seq -o /var/tmp/from_scwrl_103383154.pdb > /var/tmp/scwrl_103383154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_103383154.pdb Number of alignments=834 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)L201 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A202 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)V203 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGP 2arzA 123 :DFWVLQPVQWRFIGGF T0506 159 :ARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASR 2arzA 140 :AIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL T0506 204 :LA 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQL Number of specific fragments extracted= 8 number of extra gaps= 5 total=6722 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_246067613.pdb -s /var/tmp/to_scwrl_246067613.seq -o /var/tmp/from_scwrl_246067613.pdb > /var/tmp/scwrl_246067613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246067613.pdb Number of alignments=835 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6734 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1422758574.pdb -s /var/tmp/to_scwrl_1422758574.seq -o /var/tmp/from_scwrl_1422758574.pdb > /var/tmp/scwrl_1422758574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1422758574.pdb Number of alignments=836 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELMA 2arzA 150 :PLANPFAG T0506 183 :AAESEATRLNAIKGEASRLAV 2arzA 159 :AERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6746 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2050627102.pdb -s /var/tmp/to_scwrl_2050627102.seq -o /var/tmp/from_scwrl_2050627102.pdb > /var/tmp/scwrl_2050627102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050627102.pdb Number of alignments=837 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELMA 2arzA 150 :PLANPFAG T0506 183 :AAESEATRLNAIKGEASRLAV 2arzA 159 :AERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6758 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_927014164.pdb -s /var/tmp/to_scwrl_927014164.seq -o /var/tmp/from_scwrl_927014164.pdb > /var/tmp/scwrl_927014164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_927014164.pdb Number of alignments=838 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6770 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_165606692.pdb -s /var/tmp/to_scwrl_165606692.seq -o /var/tmp/from_scwrl_165606692.pdb > /var/tmp/scwrl_165606692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_165606692.pdb Number of alignments=839 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6782 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1290609934.pdb -s /var/tmp/to_scwrl_1290609934.seq -o /var/tmp/from_scwrl_1290609934.pdb > /var/tmp/scwrl_1290609934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1290609934.pdb Number of alignments=840 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPA 2arzA 141 :IHWLAAE T0506 173 :DLSGAEELM 2arzA 148 :RVPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6794 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1124504038.pdb -s /var/tmp/to_scwrl_1124504038.seq -o /var/tmp/from_scwrl_1124504038.pdb > /var/tmp/scwrl_1124504038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1124504038.pdb Number of alignments=841 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPAD 2arzA 141 :IHWLAAER T0506 174 :LSGAEELM 2arzA 149 :VPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6806 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1654179117.pdb -s /var/tmp/to_scwrl_1654179117.seq -o /var/tmp/from_scwrl_1654179117.pdb > /var/tmp/scwrl_1654179117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1654179117.pdb Number of alignments=842 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6818 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_379450938.pdb -s /var/tmp/to_scwrl_379450938.seq -o /var/tmp/from_scwrl_379450938.pdb > /var/tmp/scwrl_379450938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_379450938.pdb Number of alignments=843 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEEL 2arzA 150 :PLANPF T0506 181 :MAAAESEATRLNAIKGEASRLAV 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6830 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_146981912.pdb -s /var/tmp/to_scwrl_146981912.seq -o /var/tmp/from_scwrl_146981912.pdb > /var/tmp/scwrl_146981912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_146981912.pdb Number of alignments=844 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEEL 2arzA 150 :PLANPF T0506 181 :MAAAESEATRLNAIKGEASRLAV 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6842 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1624245672.pdb -s /var/tmp/to_scwrl_1624245672.seq -o /var/tmp/from_scwrl_1624245672.pdb > /var/tmp/scwrl_1624245672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1624245672.pdb Number of alignments=845 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPAD 2arzA 141 :IHWLAAER T0506 174 :LSGAEELM 2arzA 149 :VPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6854 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1378197496.pdb -s /var/tmp/to_scwrl_1378197496.seq -o /var/tmp/from_scwrl_1378197496.pdb > /var/tmp/scwrl_1378197496.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1378197496.pdb Number of alignments=846 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPAD 2arzA 141 :IHWLAAER T0506 174 :LSGAEELM 2arzA 149 :VPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6866 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1336281504.pdb -s /var/tmp/to_scwrl_1336281504.seq -o /var/tmp/from_scwrl_1336281504.pdb > /var/tmp/scwrl_1336281504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1336281504.pdb Number of alignments=847 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6878 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_852126376.pdb -s /var/tmp/to_scwrl_852126376.seq -o /var/tmp/from_scwrl_852126376.pdb > /var/tmp/scwrl_852126376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852126376.pdb Number of alignments=848 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELMA 2arzA 150 :PLANPFAG T0506 183 :AAESEATRLNAIKGEASRLAV 2arzA 159 :AERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6890 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1413057178.pdb -s /var/tmp/to_scwrl_1413057178.seq -o /var/tmp/from_scwrl_1413057178.pdb > /var/tmp/scwrl_1413057178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1413057178.pdb Number of alignments=849 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELMA 2arzA 150 :PLANPFAG T0506 183 :AAESEATRLNAIKGEASRLAV 2arzA 159 :AERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6902 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_743682034.pdb -s /var/tmp/to_scwrl_743682034.seq -o /var/tmp/from_scwrl_743682034.pdb > /var/tmp/scwrl_743682034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_743682034.pdb Number of alignments=850 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6914 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2021460119.pdb -s /var/tmp/to_scwrl_2021460119.seq -o /var/tmp/from_scwrl_2021460119.pdb > /var/tmp/scwrl_2021460119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021460119.pdb Number of alignments=851 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6926 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_482219007.pdb -s /var/tmp/to_scwrl_482219007.seq -o /var/tmp/from_scwrl_482219007.pdb > /var/tmp/scwrl_482219007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482219007.pdb Number of alignments=852 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPA 2arzA 141 :IHWLAAE T0506 173 :DLSGAEELM 2arzA 148 :RVPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6938 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1603290724.pdb -s /var/tmp/to_scwrl_1603290724.seq -o /var/tmp/from_scwrl_1603290724.pdb > /var/tmp/scwrl_1603290724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603290724.pdb Number of alignments=853 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPAD 2arzA 141 :IHWLAAER T0506 174 :LSGAEELM 2arzA 149 :VPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6950 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1360772709.pdb -s /var/tmp/to_scwrl_1360772709.seq -o /var/tmp/from_scwrl_1360772709.pdb > /var/tmp/scwrl_1360772709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360772709.pdb Number of alignments=854 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEELM 2arzA 150 :PLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6962 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1796125699.pdb -s /var/tmp/to_scwrl_1796125699.seq -o /var/tmp/from_scwrl_1796125699.pdb > /var/tmp/scwrl_1796125699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1796125699.pdb Number of alignments=855 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEEL 2arzA 150 :PLANPF T0506 181 :MAAAESEATRLNAIKGEASRLAV 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6974 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_390512195.pdb -s /var/tmp/to_scwrl_390512195.seq -o /var/tmp/from_scwrl_390512195.pdb > /var/tmp/scwrl_390512195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390512195.pdb Number of alignments=856 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPADL 2arzA 141 :IHWLAAERV T0506 175 :SGAEEL 2arzA 150 :PLANPF T0506 181 :MAAAESEATRLNAIKGEASRLAV 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 12 number of extra gaps= 6 total=6986 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_541351397.pdb -s /var/tmp/to_scwrl_541351397.seq -o /var/tmp/from_scwrl_541351397.pdb > /var/tmp/scwrl_541351397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541351397.pdb Number of alignments=857 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPAD 2arzA 141 :IHWLAAER T0506 174 :LSGAEELM 2arzA 149 :VPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=6998 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_194878324.pdb -s /var/tmp/to_scwrl_194878324.seq -o /var/tmp/from_scwrl_194878324.pdb > /var/tmp/scwrl_194878324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194878324.pdb Number of alignments=858 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 48 :V 2arzA 26 :K T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 29 :PGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPAR 2arzA 123 :DFWVLQPVQWRFIGGFGA T0506 162 :ASNITPAD 2arzA 141 :IHWLAAER T0506 174 :LSGAEELM 2arzA 149 :VPLANPFA T0506 182 :AAAESEATRLNAIKGEASRLAV 2arzA 158 :EAERGMVEHMNSDHAAAIAHYV T0506 204 :L 2arzA 181 :L T0506 208 :KT 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 12 number of extra gaps= 6 total=7010 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_78166052.pdb -s /var/tmp/to_scwrl_78166052.seq -o /var/tmp/from_scwrl_78166052.pdb > /var/tmp/scwrl_78166052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78166052.pdb Number of alignments=859 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=7018 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1675084339.pdb -s /var/tmp/to_scwrl_1675084339.seq -o /var/tmp/from_scwrl_1675084339.pdb > /var/tmp/scwrl_1675084339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1675084339.pdb Number of alignments=860 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=7026 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_68023042.pdb -s /var/tmp/to_scwrl_68023042.seq -o /var/tmp/from_scwrl_68023042.pdb > /var/tmp/scwrl_68023042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_68023042.pdb Number of alignments=861 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 7 number of extra gaps= 5 total=7033 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_198322519.pdb -s /var/tmp/to_scwrl_198322519.seq -o /var/tmp/from_scwrl_198322519.pdb > /var/tmp/scwrl_198322519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198322519.pdb Number of alignments=862 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=7041 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1008978827.pdb -s /var/tmp/to_scwrl_1008978827.seq -o /var/tmp/from_scwrl_1008978827.pdb > /var/tmp/scwrl_1008978827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1008978827.pdb Number of alignments=863 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=7049 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1838443160.pdb -s /var/tmp/to_scwrl_1838443160.seq -o /var/tmp/from_scwrl_1838443160.pdb > /var/tmp/scwrl_1838443160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838443160.pdb Number of alignments=864 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 7 number of extra gaps= 5 total=7056 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_301705673.pdb -s /var/tmp/to_scwrl_301705673.seq -o /var/tmp/from_scwrl_301705673.pdb > /var/tmp/scwrl_301705673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_301705673.pdb Number of alignments=865 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 7 number of extra gaps= 5 total=7063 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1255046439.pdb -s /var/tmp/to_scwrl_1255046439.seq -o /var/tmp/from_scwrl_1255046439.pdb > /var/tmp/scwrl_1255046439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1255046439.pdb Number of alignments=866 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=7071 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1113718087.pdb -s /var/tmp/to_scwrl_1113718087.seq -o /var/tmp/from_scwrl_1113718087.pdb > /var/tmp/scwrl_1113718087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113718087.pdb Number of alignments=867 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 8 number of extra gaps= 5 total=7079 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_204849128.pdb -s /var/tmp/to_scwrl_204849128.seq -o /var/tmp/from_scwrl_204849128.pdb > /var/tmp/scwrl_204849128.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204849128.pdb Number of alignments=868 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLSG 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFA T0506 181 :MAAAESEATRLNAIKGEASRLAVLA 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 7 number of extra gaps= 5 total=7086 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_34576956.pdb -s /var/tmp/to_scwrl_34576956.seq -o /var/tmp/from_scwrl_34576956.pdb > /var/tmp/scwrl_34576956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34576956.pdb Number of alignments=869 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 7 number of extra gaps= 5 total=7093 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1279324779.pdb -s /var/tmp/to_scwrl_1279324779.seq -o /var/tmp/from_scwrl_1279324779.pdb > /var/tmp/scwrl_1279324779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1279324779.pdb Number of alignments=870 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLAR Number of specific fragments extracted= 7 number of extra gaps= 5 total=7100 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1495459062.pdb -s /var/tmp/to_scwrl_1495459062.seq -o /var/tmp/from_scwrl_1495459062.pdb > /var/tmp/scwrl_1495459062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495459062.pdb Number of alignments=871 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 8 number of extra gaps= 5 total=7108 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1159080994.pdb -s /var/tmp/to_scwrl_1159080994.seq -o /var/tmp/from_scwrl_1159080994.pdb > /var/tmp/scwrl_1159080994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1159080994.pdb Number of alignments=872 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 25 :EAVRVARDVLHTSRTAALATLD 2arzA 4 :EAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 8 number of extra gaps= 5 total=7116 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_786020250.pdb -s /var/tmp/to_scwrl_786020250.seq -o /var/tmp/from_scwrl_786020250.pdb > /var/tmp/scwrl_786020250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786020250.pdb Number of alignments=873 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=7123 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1874910000.pdb -s /var/tmp/to_scwrl_1874910000.seq -o /var/tmp/from_scwrl_1874910000.pdb > /var/tmp/scwrl_1874910000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1874910000.pdb Number of alignments=874 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 8 number of extra gaps= 5 total=7131 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1306062907.pdb -s /var/tmp/to_scwrl_1306062907.seq -o /var/tmp/from_scwrl_1306062907.pdb > /var/tmp/scwrl_1306062907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306062907.pdb Number of alignments=875 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 8 number of extra gaps= 5 total=7139 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_262782276.pdb -s /var/tmp/to_scwrl_262782276.seq -o /var/tmp/from_scwrl_262782276.pdb > /var/tmp/scwrl_262782276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_262782276.pdb Number of alignments=876 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=7146 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1105623849.pdb -s /var/tmp/to_scwrl_1105623849.seq -o /var/tmp/from_scwrl_1105623849.pdb > /var/tmp/scwrl_1105623849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1105623849.pdb Number of alignments=877 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=7153 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_494860765.pdb -s /var/tmp/to_scwrl_494860765.seq -o /var/tmp/from_scwrl_494860765.pdb > /var/tmp/scwrl_494860765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_494860765.pdb Number of alignments=878 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 8 number of extra gaps= 5 total=7161 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1114908651.pdb -s /var/tmp/to_scwrl_1114908651.seq -o /var/tmp/from_scwrl_1114908651.pdb > /var/tmp/scwrl_1114908651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114908651.pdb Number of alignments=879 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 207 :AK 2arzA 185 :PA T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 8 number of extra gaps= 5 total=7169 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_371197382.pdb -s /var/tmp/to_scwrl_371197382.seq -o /var/tmp/from_scwrl_371197382.pdb > /var/tmp/scwrl_371197382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_371197382.pdb Number of alignments=880 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLSG 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFA T0506 181 :MAAAESEATRLNAIKGEASRLAVLA 2arzA 157 :GEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=7176 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1238542798.pdb -s /var/tmp/to_scwrl_1238542798.seq -o /var/tmp/from_scwrl_1238542798.pdb > /var/tmp/scwrl_1238542798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1238542798.pdb Number of alignments=881 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2arzA)S2 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANPF T0506 180 :LMAAAESEATRLNAIKGEASRLAVLA 2arzA 156 :AGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=7183 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_988885124.pdb -s /var/tmp/to_scwrl_988885124.seq -o /var/tmp/from_scwrl_988885124.pdb > /var/tmp/scwrl_988885124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_988885124.pdb Number of alignments=882 # 2arzA read from all-align.a2m # found chain 2arzA in template set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)V119 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)V119 Warning: unaligning (T0506)D141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)F122 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)F122 Warning: unaligning (T0506)G206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G183 Warning: unaligning (T0506)A207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G183 Warning: unaligning (T0506)K208 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)L184 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)A188 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A188 Warning: unaligning (T0506)R211 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)A189 Warning: unaligning (T0506)S226 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2arzA)G205 Warning: unaligning (T0506)A227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2arzA)G205 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE in next template residue (2arzA)G207 Warning: unaligning (T0506)D229 because of BadResidue code BAD_PEPTIDE at template residue (2arzA)G207 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2arzA 3 :VEAAKNARELLLKEYRAVLSTHS T0506 47 :PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYL 2arzA 27 :KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYH T0506 140 :P 2arzA 120 :H T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDL 2arzA 123 :DFWVLQPVQWRFIGGFGAIHWLAAERVPLANP T0506 179 :ELMAAAESEATRLNAIKGEASRLAVLA 2arzA 155 :FAGEAERGMVEHMNSDHAAAIAHYVEL T0506 212 :WKITSIDPDGIDLA 2arzA 190 :AQLAGIDTEGFHLR T0506 230 :LARLWFAERVETLKQFEKALAQLL 2arzA 208 :LHWLPFPAACGNPGAVRQALVQLA Number of specific fragments extracted= 7 number of extra gaps= 5 total=7190 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_853416389.pdb -s /var/tmp/to_scwrl_853416389.seq -o /var/tmp/from_scwrl_853416389.pdb > /var/tmp/scwrl_853416389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_853416389.pdb Number of alignments=883 2asfA expands to /projects/compbio/data/pdb/2asf.pdb.gz 2asfA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 2asfA Skipped atom 548, because occupancy 0.250 <= existing 0.750 in 2asfA # 2asfA read from all-align.a2m # adding 2asfA to template set # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDGTPFFFAAGLT 2asfA 42 :FTFDPKTHIARVITTGG T0506 76 :LHARNMETDARISVTLAPF 2asfA 60 :QKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPDEVPLAIA 2asfA 79 :ARWLSLEGRAAVNSDIDAVRDAE T0506 125 :RYIARYPKAKLYL 2asfA 103 :RYAQRYRTPRPNP T0506 211 :RWKITSIDPDGIDL 2asfA 116 :RRVVIEVQIERVLG T0506 250 :AQLLK 2asfA 131 :ADLLD Number of specific fragments extracted= 8 number of extra gaps= 1 total=7198 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_694349876.pdb -s /var/tmp/to_scwrl_694349876.seq -o /var/tmp/from_scwrl_694349876.pdb > /var/tmp/scwrl_694349876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694349876.pdb Number of alignments=884 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDGTPFFFAAGLT 2asfA 42 :FTFDPKTHIARVITTGG T0506 76 :LHARNMETDARISVTLAPF 2asfA 60 :QKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPDEVPLAI 2asfA 79 :ARWLSLEGRAAVNSDIDAVRDA T0506 124 :ARYIARYPKAKLYL 2asfA 102 :LRYAQRYRTPRPNP T0506 211 :RWKITSIDPDGIDL 2asfA 116 :RRVVIEVQIERVLG T0506 250 :AQLLK 2asfA 131 :ADLLD Number of specific fragments extracted= 8 number of extra gaps= 1 total=7206 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_202174187.pdb -s /var/tmp/to_scwrl_202174187.seq -o /var/tmp/from_scwrl_202174187.pdb > /var/tmp/scwrl_202174187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202174187.pdb Number of alignments=885 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 30 :ARDVLHTSRTAALATLDP 2asfA 14 :ALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDGTPFFFAAGLT 2asfA 42 :FTFDPKTHIARVITTGG T0506 76 :LHARNMETDARISVTLAPF 2asfA 60 :QKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPDEVPLAIA 2asfA 79 :ARWLSLEGRAAVNSDIDAVRDAE T0506 125 :RYIARYPKAKLYL 2asfA 103 :RYAQRYRTPRPNP T0506 141 :DTRLYRLRTEGVQINGG 2asfA 116 :RRVVIEVQIERVLGSAD Number of specific fragments extracted= 7 number of extra gaps= 1 total=7213 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_502058441.pdb -s /var/tmp/to_scwrl_502058441.seq -o /var/tmp/from_scwrl_502058441.pdb > /var/tmp/scwrl_502058441.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_502058441.pdb Number of alignments=886 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 31 :RDVLHTSRTAALATLDP 2asfA 15 :LAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDGTPFFFAAGLT 2asfA 42 :FTFDPKTHIARVITTGG T0506 76 :LHARNMETDARISVTLAPF 2asfA 60 :QKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPDEVPLAI 2asfA 79 :ARWLSLEGRAAVNSDIDAVRDA T0506 124 :ARYIARYPKAKLYL 2asfA 102 :LRYAQRYRTPRPNP T0506 141 :DTRLYRLRTEGVQINGG 2asfA 116 :RRVVIEVQIERVLGSAD Number of specific fragments extracted= 7 number of extra gaps= 1 total=7220 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1084862071.pdb -s /var/tmp/to_scwrl_1084862071.seq -o /var/tmp/from_scwrl_1084862071.pdb > /var/tmp/scwrl_1084862071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084862071.pdb Number of alignments=887 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDG 2asfA 42 :FTFDPKT T0506 66 :TPFFFAAGLTLHARNM 2asfA 50 :IARVITTGGSQKAVNA T0506 197 :EASRLAVLAGAKTGRWKITSI 2asfA 66 :DRSGLAVLSQVDGARWLSLEG T0506 218 :DPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 2asfA 93 :DIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLG Number of specific fragments extracted= 6 number of extra gaps= 1 total=7226 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_743525584.pdb -s /var/tmp/to_scwrl_743525584.seq -o /var/tmp/from_scwrl_743525584.pdb > /var/tmp/scwrl_743525584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_743525584.pdb Number of alignments=888 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDG 2asfA 42 :FTFDPKT T0506 66 :TPFFFAAGLTLHARNM 2asfA 50 :IARVITTGGSQKAVNA T0506 199 :SRLAVLAG 2asfA 71 :AVLSQVDG T0506 210 :GRWKITSI 2asfA 79 :ARWLSLEG T0506 218 :DPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 2asfA 93 :DIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLG Number of specific fragments extracted= 7 number of extra gaps= 1 total=7233 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_696936765.pdb -s /var/tmp/to_scwrl_696936765.seq -o /var/tmp/from_scwrl_696936765.pdb > /var/tmp/scwrl_696936765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696936765.pdb Number of alignments=889 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 31 :RDVLHTSRTAALATLDP 2asfA 15 :LAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDG 2asfA 42 :FTFDPKT T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 50 :IARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARY 2asfA 79 :ARWLSLEGRAAVNSDIDAVRDAELRYAQR Number of specific fragments extracted= 5 number of extra gaps= 1 total=7238 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1163028123.pdb -s /var/tmp/to_scwrl_1163028123.seq -o /var/tmp/from_scwrl_1163028123.pdb > /var/tmp/scwrl_1163028123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1163028123.pdb Number of alignments=890 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 31 :RDVLHTSRTAALATLDP 2asfA 15 :LAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEPDG 2asfA 42 :FTFDPKT T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 50 :IARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIG 2asfA 79 :ARWLSLEGRAAVNS T0506 116 :PDEVPLAIARYIARY 2asfA 94 :IDAVRDAELRYAQRY Number of specific fragments extracted= 6 number of extra gaps= 1 total=7244 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_271126276.pdb -s /var/tmp/to_scwrl_271126276.seq -o /var/tmp/from_scwrl_271126276.pdb > /var/tmp/scwrl_271126276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_271126276.pdb Number of alignments=891 # 2asfA read from all-align.a2m # found chain 2asfA in template set T0506 193 :AIKGEASRLAVLAGAKTGRW 2asfA 62 :AVNADRSGLAVLSQVDGARW Number of specific fragments extracted= 1 number of extra gaps= 0 total=7245 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_764959807.pdb -s /var/tmp/to_scwrl_764959807.seq -o /var/tmp/from_scwrl_764959807.pdb > /var/tmp/scwrl_764959807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764959807.pdb Number of alignments=892 # 2asfA read from all-align.a2m # found chain 2asfA in template set T0506 192 :NAIKGEASRLAVLAGAKTGRW 2asfA 61 :KAVNADRSGLAVLSQVDGARW Number of specific fragments extracted= 1 number of extra gaps= 0 total=7246 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1361350642.pdb -s /var/tmp/to_scwrl_1361350642.seq -o /var/tmp/from_scwrl_1361350642.pdb > /var/tmp/scwrl_1361350642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1361350642.pdb Number of alignments=893 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)R160 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 94 :FGKG 2asfA 76 :VDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPA 2asfA 109 :RTPRPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7254 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1280105102.pdb -s /var/tmp/to_scwrl_1280105102.seq -o /var/tmp/from_scwrl_1280105102.pdb > /var/tmp/scwrl_1280105102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280105102.pdb Number of alignments=894 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)R160 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPA 2asfA 109 :RTPRPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7261 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_455919320.pdb -s /var/tmp/to_scwrl_455919320.seq -o /var/tmp/from_scwrl_455919320.pdb > /var/tmp/scwrl_455919320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_455919320.pdb Number of alignments=895 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)T166 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQING 2asfA 109 :RTPRPNPRRVVIEVQIERVLGSA T0506 163 :SNI 2asfA 132 :DLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7269 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1663056315.pdb -s /var/tmp/to_scwrl_1663056315.seq -o /var/tmp/from_scwrl_1663056315.pdb > /var/tmp/scwrl_1663056315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663056315.pdb Number of alignments=896 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)T166 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQV T0506 95 :GKG 2asfA 77 :DGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS T0506 162 :ASNI 2asfA 131 :ADLL Number of specific fragments extracted= 9 number of extra gaps= 1 total=7278 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_387667895.pdb -s /var/tmp/to_scwrl_387667895.seq -o /var/tmp/from_scwrl_387667895.pdb > /var/tmp/scwrl_387667895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387667895.pdb Number of alignments=897 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)T166 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS T0506 162 :ASNI 2asfA 131 :ADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7286 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1569637407.pdb -s /var/tmp/to_scwrl_1569637407.seq -o /var/tmp/from_scwrl_1569637407.pdb > /var/tmp/scwrl_1569637407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569637407.pdb Number of alignments=898 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)T166 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQING 2asfA 109 :RTPRPNPRRVVIEVQIERVLGSA T0506 163 :SNI 2asfA 132 :DLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7294 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1867905443.pdb -s /var/tmp/to_scwrl_1867905443.seq -o /var/tmp/from_scwrl_1867905443.pdb > /var/tmp/scwrl_1867905443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867905443.pdb Number of alignments=899 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)R160 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPA 2asfA 109 :RTPRPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7301 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_422244852.pdb -s /var/tmp/to_scwrl_422244852.seq -o /var/tmp/from_scwrl_422244852.pdb > /var/tmp/scwrl_422244852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422244852.pdb Number of alignments=900 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)R160 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 94 :FGKG 2asfA 76 :VDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPA 2asfA 109 :RTPRPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7309 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_701478541.pdb -s /var/tmp/to_scwrl_701478541.seq -o /var/tmp/from_scwrl_701478541.pdb > /var/tmp/scwrl_701478541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_701478541.pdb Number of alignments=901 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)R160 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 94 :FGKG 2asfA 76 :VDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPA 2asfA 109 :RTPRPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7317 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1215880859.pdb -s /var/tmp/to_scwrl_1215880859.seq -o /var/tmp/from_scwrl_1215880859.pdb > /var/tmp/scwrl_1215880859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1215880859.pdb Number of alignments=902 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)R160 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 93 :P 2asfA 76 :V T0506 95 :GKG 2asfA 77 :DGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARYPK 2asfA 95 :DAVRDAELRYAQRYRT T0506 136 :YLSLPDTRLYRLRTEGVQINGGPA 2asfA 111 :PRPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 9 number of extra gaps= 1 total=7326 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1581325846.pdb -s /var/tmp/to_scwrl_1581325846.seq -o /var/tmp/from_scwrl_1581325846.pdb > /var/tmp/scwrl_1581325846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581325846.pdb Number of alignments=903 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)T166 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS T0506 162 :ASNI 2asfA 131 :ADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7334 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1487498790.pdb -s /var/tmp/to_scwrl_1487498790.seq -o /var/tmp/from_scwrl_1487498790.pdb > /var/tmp/scwrl_1487498790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1487498790.pdb Number of alignments=904 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)T166 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS T0506 162 :ASNI 2asfA 131 :ADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7342 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_943307213.pdb -s /var/tmp/to_scwrl_943307213.seq -o /var/tmp/from_scwrl_943307213.pdb > /var/tmp/scwrl_943307213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943307213.pdb Number of alignments=905 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 94 :FGKG 2asfA 76 :VDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQ 2asfA 109 :RTPRPNPRRVVIEVQIERVL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7350 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_739905107.pdb -s /var/tmp/to_scwrl_739905107.seq -o /var/tmp/from_scwrl_739905107.pdb > /var/tmp/scwrl_739905107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_739905107.pdb Number of alignments=906 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQI 2asfA 109 :RTPRPNPRRVVIEVQIERVLG Number of specific fragments extracted= 7 number of extra gaps= 1 total=7357 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1750281066.pdb -s /var/tmp/to_scwrl_1750281066.seq -o /var/tmp/from_scwrl_1750281066.pdb > /var/tmp/scwrl_1750281066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750281066.pdb Number of alignments=907 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQI 2asfA 109 :RTPRPNPRRVVIEVQIERVLG Number of specific fragments extracted= 7 number of extra gaps= 1 total=7364 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2048931063.pdb -s /var/tmp/to_scwrl_2048931063.seq -o /var/tmp/from_scwrl_2048931063.pdb > /var/tmp/scwrl_2048931063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2048931063.pdb Number of alignments=908 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQV T0506 95 :GKG 2asfA 77 :DGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQ 2asfA 109 :RTPRPNPRRVVIEVQIERVL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7372 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1234765871.pdb -s /var/tmp/to_scwrl_1234765871.seq -o /var/tmp/from_scwrl_1234765871.pdb > /var/tmp/scwrl_1234765871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1234765871.pdb Number of alignments=909 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQI 2asfA 109 :RTPRPNPRRVVIEVQIERVLG Number of specific fragments extracted= 7 number of extra gaps= 1 total=7379 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_717706072.pdb -s /var/tmp/to_scwrl_717706072.seq -o /var/tmp/from_scwrl_717706072.pdb > /var/tmp/scwrl_717706072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_717706072.pdb Number of alignments=910 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS Number of specific fragments extracted= 7 number of extra gaps= 1 total=7386 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_272644798.pdb -s /var/tmp/to_scwrl_272644798.seq -o /var/tmp/from_scwrl_272644798.pdb > /var/tmp/scwrl_272644798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_272644798.pdb Number of alignments=911 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS Number of specific fragments extracted= 7 number of extra gaps= 1 total=7393 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_325825023.pdb -s /var/tmp/to_scwrl_325825023.seq -o /var/tmp/from_scwrl_325825023.pdb > /var/tmp/scwrl_325825023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_325825023.pdb Number of alignments=912 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 94 :FGKG 2asfA 76 :VDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS Number of specific fragments extracted= 8 number of extra gaps= 1 total=7401 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1706591195.pdb -s /var/tmp/to_scwrl_1706591195.seq -o /var/tmp/from_scwrl_1706591195.pdb > /var/tmp/scwrl_1706591195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706591195.pdb Number of alignments=913 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 94 :FGKG 2asfA 76 :VDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQI 2asfA 109 :RTPRPNPRRVVIEVQIERVLG Number of specific fragments extracted= 8 number of extra gaps= 1 total=7409 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1126061186.pdb -s /var/tmp/to_scwrl_1126061186.seq -o /var/tmp/from_scwrl_1126061186.pdb > /var/tmp/scwrl_1126061186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126061186.pdb Number of alignments=914 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQ T0506 93 :P 2asfA 76 :V T0506 95 :GKG 2asfA 77 :DGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARYPK 2asfA 95 :DAVRDAELRYAQRYRT T0506 136 :YLSLPDTRLYRLRTEGVQING 2asfA 111 :PRPNPRRVVIEVQIERVLGSA Number of specific fragments extracted= 9 number of extra gaps= 1 total=7418 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1020174900.pdb -s /var/tmp/to_scwrl_1020174900.seq -o /var/tmp/from_scwrl_1020174900.pdb > /var/tmp/scwrl_1020174900.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020174900.pdb Number of alignments=915 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS Number of specific fragments extracted= 7 number of extra gaps= 1 total=7425 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1908765382.pdb -s /var/tmp/to_scwrl_1908765382.seq -o /var/tmp/from_scwrl_1908765382.pdb > /var/tmp/scwrl_1908765382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908765382.pdb Number of alignments=916 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 28 :RVARDVLHTSRTAALATLD 2asfA 12 :DDALAFLSERHLAMLTTLR T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA T0506 59 :IGIEPDGT 2asfA 42 :FTFDPKTH T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 51 :ARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 117 :DEVPLAIARYIARY 2asfA 95 :DAVRDAELRYAQRY T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2asfA 109 :RTPRPNPRRVVIEVQIERVLGS T0506 162 :ASN 2asfA 131 :ADL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7433 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1628119627.pdb -s /var/tmp/to_scwrl_1628119627.seq -o /var/tmp/from_scwrl_1628119627.pdb > /var/tmp/scwrl_1628119627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628119627.pdb Number of alignments=917 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)P11 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)A250 because last residue in template chain is (2asfA)D135 T0506 12 :RGTKI 2asfA 12 :DDALA T0506 33 :VLHTSRTAALATLDP 2asfA 17 :FLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPDE 2asfA 79 :ARWLSLEGRAAVNSDID T0506 119 :VPLAIARYIARYPKAK 2asfA 97 :VRDAELRYAQRYRTPR T0506 228 :SDLARLWFAERVETLKQFEKAL 2asfA 113 :PNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7441 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2105036971.pdb -s /var/tmp/to_scwrl_2105036971.seq -o /var/tmp/from_scwrl_2105036971.pdb > /var/tmp/scwrl_2105036971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2105036971.pdb Number of alignments=918 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)A250 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVT 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLS T0506 98 :DALTLPRLTLVGRADRIGPDE 2asfA 75 :QVDGARWLSLEGRAAVNSDID T0506 119 :VPLAIARYIARYPKA 2asfA 97 :VRDAELRYAQRYRTP T0506 227 :ASDLARLWFAERVETLKQFEKAL 2asfA 112 :RPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7448 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_504807320.pdb -s /var/tmp/to_scwrl_504807320.seq -o /var/tmp/from_scwrl_504807320.pdb > /var/tmp/scwrl_504807320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_504807320.pdb Number of alignments=919 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)A250 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVT 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLS T0506 98 :DALTLPRLTLVGRADRIGPD 2asfA 75 :QVDGARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLY 2asfA 95 :DAVRDAELRYAQRYRTP T0506 227 :ASDLARLWFAERVETLKQFEKAL 2asfA 112 :RPNPRRVVIEVQIERVLGSADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7455 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_177572745.pdb -s /var/tmp/to_scwrl_177572745.seq -o /var/tmp/from_scwrl_177572745.pdb > /var/tmp/scwrl_177572745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_177572745.pdb Number of alignments=920 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I165 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL T0506 159 :ARNASN 2asfA 129 :GSADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7462 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1120581447.pdb -s /var/tmp/to_scwrl_1120581447.seq -o /var/tmp/from_scwrl_1120581447.pdb > /var/tmp/scwrl_1120581447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120581447.pdb Number of alignments=921 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I165 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 119 :VPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 94 :IDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL T0506 159 :ARNASN 2asfA 129 :GSADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7469 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_775933596.pdb -s /var/tmp/to_scwrl_775933596.seq -o /var/tmp/from_scwrl_775933596.pdb > /var/tmp/scwrl_775933596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_775933596.pdb Number of alignments=922 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I165 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVD T0506 101 :TLPRLTLVGRADRIGPD 2asfA 78 :GARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL T0506 159 :ARNASN 2asfA 129 :GSADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7476 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_942532552.pdb -s /var/tmp/to_scwrl_942532552.seq -o /var/tmp/from_scwrl_942532552.pdb > /var/tmp/scwrl_942532552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942532552.pdb Number of alignments=923 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I165 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGS T0506 161 :NASN 2asfA 131 :ADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7483 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_334448443.pdb -s /var/tmp/to_scwrl_334448443.seq -o /var/tmp/from_scwrl_334448443.pdb > /var/tmp/scwrl_334448443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334448443.pdb Number of alignments=924 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I165 because last residue in template chain is (2asfA)D135 T0506 24 :FE 2asfA 12 :DD T0506 30 :ARDVLHTSRTAALATLDP 2asfA 14 :ALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQ T0506 99 :ALTLPRLTLVGRADRIGPDE 2asfA 76 :VDGARWLSLEGRAAVNSDID T0506 119 :VPLAIARYIARYPKAKLYLS 2asfA 97 :VRDAELRYAQRYRTPRPNPR T0506 142 :TRLYRLRTEGVQ 2asfA 117 :RVVIEVQIERVL T0506 159 :ARNASN 2asfA 129 :GSADLL Number of specific fragments extracted= 9 number of extra gaps= 1 total=7492 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2056038699.pdb -s /var/tmp/to_scwrl_2056038699.seq -o /var/tmp/from_scwrl_2056038699.pdb > /var/tmp/scwrl_2056038699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2056038699.pdb Number of alignments=925 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)E178 because last residue in template chain is (2asfA)D135 T0506 24 :FEAVRV 2asfA 12 :DDALAF T0506 34 :LHTSRTAALATLDP 2asfA 18 :LSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGPD 2asfA 80 :RWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQI 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLG T0506 173 :DLSGA 2asfA 130 :SADLL Number of specific fragments extracted= 8 number of extra gaps= 1 total=7500 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1398451872.pdb -s /var/tmp/to_scwrl_1398451872.seq -o /var/tmp/from_scwrl_1398451872.pdb > /var/tmp/scwrl_1398451872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1398451872.pdb Number of alignments=926 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)E178 because last residue in template chain is (2asfA)D135 T0506 24 :FEAVR 2asfA 12 :DDALA T0506 33 :VLHTSRTAALATLDP 2asfA 17 :FLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGPD 2asfA 80 :RWLSLEGRAAVNSDI T0506 118 :EVPLAIARYIARYPKA 2asfA 96 :AVRDAELRYAQRYRTP T0506 137 :LSLPDTRLYRLRTEGVQI 2asfA 112 :RPNPRRVVIEVQIERVLG T0506 173 :DLSGA 2asfA 130 :SADLL Number of specific fragments extracted= 9 number of extra gaps= 1 total=7509 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1997504758.pdb -s /var/tmp/to_scwrl_1997504758.seq -o /var/tmp/from_scwrl_1997504758.pdb > /var/tmp/scwrl_1997504758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1997504758.pdb Number of alignments=927 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)D173 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGP 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADL T0506 172 :T 2asfA 134 :L Number of specific fragments extracted= 7 number of extra gaps= 1 total=7516 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_296222947.pdb -s /var/tmp/to_scwrl_296222947.seq -o /var/tmp/from_scwrl_296222947.pdb > /var/tmp/scwrl_296222947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_296222947.pdb Number of alignments=928 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)V27 because first residue in template chain is (2asfA)S11 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I165 because last residue in template chain is (2asfA)D135 T0506 28 :RVARDVLHTSRTAALATLDP 2asfA 12 :DDALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGS T0506 161 :NASN 2asfA 131 :ADLL Number of specific fragments extracted= 7 number of extra gaps= 1 total=7523 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_820605633.pdb -s /var/tmp/to_scwrl_820605633.seq -o /var/tmp/from_scwrl_820605633.pdb > /var/tmp/scwrl_820605633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820605633.pdb Number of alignments=929 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 36 :TSRTAALATLDP 2asfA 20 :ERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPDE 2asfA 79 :ARWLSLEGRAAVNSDID T0506 119 :VPLAIARYIARYPKAKL 2asfA 97 :VRDAELRYAQRYRTPRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=7529 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1717926554.pdb -s /var/tmp/to_scwrl_1717926554.seq -o /var/tmp/from_scwrl_1717926554.pdb > /var/tmp/scwrl_1717926554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1717926554.pdb Number of alignments=930 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 33 :VLHTSRTAALATLDP 2asfA 17 :FLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARN 2asfA 48 :THIARVITTGGSQKAVN Number of specific fragments extracted= 4 number of extra gaps= 1 total=7533 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_718467799.pdb -s /var/tmp/to_scwrl_718467799.seq -o /var/tmp/from_scwrl_718467799.pdb > /var/tmp/scwrl_718467799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_718467799.pdb Number of alignments=931 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 33 :VLHTSRTAALATLDP 2asfA 17 :FLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVT 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLS T0506 98 :DALTLPRLTLVGRADRIGPD 2asfA 75 :QVDGARWLSLEGRAAVNSDI T0506 120 :PLAIARYI 2asfA 95 :DAVRDAEL Number of specific fragments extracted= 6 number of extra gaps= 1 total=7539 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1522084173.pdb -s /var/tmp/to_scwrl_1522084173.seq -o /var/tmp/from_scwrl_1522084173.pdb > /var/tmp/scwrl_1522084173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1522084173.pdb Number of alignments=932 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 30 :ARDVLHTSRTAALATLDP 2asfA 14 :ALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGV 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERV Number of specific fragments extracted= 6 number of extra gaps= 1 total=7545 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_786323767.pdb -s /var/tmp/to_scwrl_786323767.seq -o /var/tmp/from_scwrl_786323767.pdb > /var/tmp/scwrl_786323767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786323767.pdb Number of alignments=933 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 31 :RDVLHTSRTAALATLDP 2asfA 15 :LAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGP 2asfA 80 :RWLSLEGRAAVNSD T0506 119 :VPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 94 :IDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=7551 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_152309999.pdb -s /var/tmp/to_scwrl_152309999.seq -o /var/tmp/from_scwrl_152309999.pdb > /var/tmp/scwrl_152309999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152309999.pdb Number of alignments=934 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 29 :VARDVLHTSRTAALATLDP 2asfA 13 :DALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVD T0506 101 :TLPRLTLVGRADRIGPD 2asfA 78 :GARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=7557 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_862099318.pdb -s /var/tmp/to_scwrl_862099318.seq -o /var/tmp/from_scwrl_862099318.pdb > /var/tmp/scwrl_862099318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862099318.pdb Number of alignments=935 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 31 :RDVLHTSRTAALATLDP 2asfA 15 :LAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=7563 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1729630980.pdb -s /var/tmp/to_scwrl_1729630980.seq -o /var/tmp/from_scwrl_1729630980.pdb > /var/tmp/scwrl_1729630980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1729630980.pdb Number of alignments=936 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 33 :VLHTSRTAALATLDP 2asfA 17 :FLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQV T0506 100 :LTLPRLTLVGRADRIGPDE 2asfA 77 :DGARWLSLEGRAAVNSDID T0506 119 :VPLAIARYIARY 2asfA 97 :VRDAELRYAQRY Number of specific fragments extracted= 6 number of extra gaps= 1 total=7569 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_892215106.pdb -s /var/tmp/to_scwrl_892215106.seq -o /var/tmp/from_scwrl_892215106.pdb > /var/tmp/scwrl_892215106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892215106.pdb Number of alignments=937 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 39 :TAALATLDP 2asfA 23 :LAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGPD 2asfA 80 :RWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=7575 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_464896737.pdb -s /var/tmp/to_scwrl_464896737.seq -o /var/tmp/from_scwrl_464896737.pdb > /var/tmp/scwrl_464896737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464896737.pdb Number of alignments=938 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 35 :HTSRTAALATLDP 2asfA 19 :SERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDGA T0506 103 :PRLTLVGRADRIGPD 2asfA 80 :RWLSLEGRAAVNSDI T0506 118 :EVPLAIARYIARYPKA 2asfA 96 :AVRDAELRYAQRYRTP T0506 137 :LSLPDTRLYRLRTEGVQI 2asfA 112 :RPNPRRVVIEVQIERVLG Number of specific fragments extracted= 7 number of extra gaps= 1 total=7582 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1631078396.pdb -s /var/tmp/to_scwrl_1631078396.seq -o /var/tmp/from_scwrl_1631078396.pdb > /var/tmp/scwrl_1631078396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631078396.pdb Number of alignments=939 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 30 :ARDVLHTSRTAALATLDP 2asfA 14 :ALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQI 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLG Number of specific fragments extracted= 6 number of extra gaps= 1 total=7588 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2126980978.pdb -s /var/tmp/to_scwrl_2126980978.seq -o /var/tmp/from_scwrl_2126980978.pdb > /var/tmp/scwrl_2126980978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2126980978.pdb Number of alignments=940 # 2asfA read from all-align.a2m # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 30 :ARDVLHTSRTAALATLDP 2asfA 14 :ALAFLSERHLAMLTTLRA T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA T0506 59 :IGIEP 2asfA 42 :FTFDP T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2asfA 48 :THIARVITTGGSQKAVNADRSGLAVLSQVDG T0506 102 :LPRLTLVGRADRIGPD 2asfA 79 :ARWLSLEGRAAVNSDI T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2asfA 95 :DAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=7594 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1182602808.pdb -s /var/tmp/to_scwrl_1182602808.seq -o /var/tmp/from_scwrl_1182602808.pdb > /var/tmp/scwrl_1182602808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182602808.pdb Number of alignments=941 2fg9A expands to /projects/compbio/data/pdb/2fg9.pdb.gz 2fg9A:Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 46, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 48, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 50, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 52, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 54, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 56, because occupancy 0.500 <= existing 0.500 in 2fg9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 614, because occupancy 0.500 <= existing 0.500 in 2fg9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 878, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2fg9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1151, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 1153, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 1155, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 1157, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 1159, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 1161, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 1163, because occupancy 0.500 <= existing 0.500 in 2fg9A Skipped atom 1165, because occupancy 0.500 <= existing 0.500 in 2fg9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2fg9A read from all-align.a2m # adding 2fg9A to template set # found chain 2fg9A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)E17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 6 :PPVITPRGTKI 2fg9A -11 :HHHHHENLYFQ T0506 19 :SAGAPFE 2fg9A 2 :KTIVIED T0506 27 :VRVARDVLHTSRTAALATLD 2fg9A 9 :KQRIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIE 2fg9A 29 :LEGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGK 2fg9A 56 :GKIEMLQRNNNVCITFSLGHK T0506 97 :GDALTLPRLTLVGRADRI 2fg9A 87 :SYSMRSESAMCRGKVEFI T0506 115 :GPDEVPLAIARYIARYPKAKLY 2fg9A 106 :DMEEKRHALDIIMRHYTKDQFS T0506 224 :LASASDLARLWFAERVETLKQFEK 2fg9A 128 :YSDPAVRNVKVWKVPVDQMTGKVF T0506 250 :AQLLK 2fg9A 152 :GLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7604 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1903723194.pdb -s /var/tmp/to_scwrl_1903723194.seq -o /var/tmp/from_scwrl_1903723194.pdb > /var/tmp/scwrl_1903723194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903723194.pdb Number of alignments=942 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 1 :MLDVAPPVITPR 2fg9A -12 :HHHHHHENLYFQ T0506 19 :SAGAPFE 2fg9A 2 :KTIVIED T0506 27 :VRVARDVLHTSRTAALATLD 2fg9A 9 :KQRIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIE 2fg9A 29 :LEGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGK 2fg9A 56 :GKIEMLQRNNNVCITFSLGHK T0506 97 :GDALTLPRLTLVGRADRIG 2fg9A 87 :SYSMRSESAMCRGKVEFIE T0506 116 :PDEVPLAIARYIARYPKAKLY 2fg9A 107 :MEEKRHALDIIMRHYTKDQFS T0506 224 :LASASDLARLWFAERVETLKQFEK 2fg9A 128 :YSDPAVRNVKVWKVPVDQMTGKVF T0506 250 :AQ 2fg9A 152 :GL Number of specific fragments extracted= 10 number of extra gaps= 2 total=7614 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_305322354.pdb -s /var/tmp/to_scwrl_305322354.seq -o /var/tmp/from_scwrl_305322354.pdb > /var/tmp/scwrl_305322354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305322354.pdb Number of alignments=943 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 31 :RDVLHTSRTAALATLD 2fg9A 13 :ESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIE 2fg9A 29 :LEGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGK 2fg9A 56 :GKIEMLQRNNNVCITFSLGHK T0506 97 :GDALTLPRLTLVGRADRI 2fg9A 87 :SYSMRSESAMCRGKVEFI T0506 115 :GPDEVPLAIARYIARY 2fg9A 106 :DMEEKRHALDIIMRHY T0506 131 :PKAKLYLSL 2fg9A 123 :KDQFSYSDP T0506 140 :PDTRLYRLRTEGVQINGG 2fg9A 134 :RNVKVWKVPVDQMTGKVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=7622 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_741710358.pdb -s /var/tmp/to_scwrl_741710358.seq -o /var/tmp/from_scwrl_741710358.pdb > /var/tmp/scwrl_741710358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_741710358.pdb Number of alignments=944 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 28 :RVARDVLHTSRTAALATLD 2fg9A 10 :QRIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIE 2fg9A 29 :LEGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGK 2fg9A 56 :GKIEMLQRNNNVCITFSLGHK T0506 97 :GDALTLPRLTLVGRADRIG 2fg9A 87 :SYSMRSESAMCRGKVEFIE T0506 116 :PDEVPLAIARYIARYPKA 2fg9A 107 :MEEKRHALDIIMRHYTKD T0506 134 :KLYLS 2fg9A 126 :FSYSD T0506 139 :LPDTRLYRLRTEGVQING 2fg9A 133 :VRNVKVWKVPVDQMTGKV Number of specific fragments extracted= 8 number of extra gaps= 1 total=7630 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_882300734.pdb -s /var/tmp/to_scwrl_882300734.seq -o /var/tmp/from_scwrl_882300734.pdb > /var/tmp/scwrl_882300734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_882300734.pdb Number of alignments=945 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIEPD 2fg9A 29 :LEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKGD 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKLV T0506 99 :ALTLPRLTLVGRADRI 2fg9A 89 :SMRSESAMCRGKVEFI T0506 115 :GPDEVPLAIARYIARYPKAKLYLSLP 2fg9A 106 :DMEEKRHALDIIMRHYTKDQFSYSDP T0506 230 :LARLWFAERVETLKQFEKALAQLLK 2fg9A 132 :AVRNVKVWKVPVDQMTGKVFGLRAD Number of specific fragments extracted= 8 number of extra gaps= 2 total=7638 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1325497253.pdb -s /var/tmp/to_scwrl_1325497253.seq -o /var/tmp/from_scwrl_1325497253.pdb > /var/tmp/scwrl_1325497253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1325497253.pdb Number of alignments=946 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIEPD 2fg9A 29 :LEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKGD 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKLV T0506 99 :ALTLPRLTLVGRADRI 2fg9A 89 :SMRSESAMCRGKVEFI T0506 115 :GPDEVPLAIARYIARYPKAKLYLSLP 2fg9A 106 :DMEEKRHALDIIMRHYTKDQFSYSDP Number of specific fragments extracted= 7 number of extra gaps= 2 total=7645 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_502992093.pdb -s /var/tmp/to_scwrl_502992093.seq -o /var/tmp/from_scwrl_502992093.pdb > /var/tmp/scwrl_502992093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_502992093.pdb Number of alignments=947 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 31 :RDVLHTSRTAALATLD 2fg9A 13 :ESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIEPD 2fg9A 29 :LEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGK 2fg9A 56 :GKIEMLQRNNNVCITFSLGHK Number of specific fragments extracted= 4 number of extra gaps= 1 total=7649 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_362936714.pdb -s /var/tmp/to_scwrl_362936714.seq -o /var/tmp/from_scwrl_362936714.pdb > /var/tmp/scwrl_362936714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_362936714.pdb Number of alignments=948 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 29 :VARDVLHTSRTAALATLD 2fg9A 11 :RIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIEPD 2fg9A 29 :LEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKGD 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKLV T0506 99 :ALTLPRLTLVGRADRIG 2fg9A 89 :SMRSESAMCRGKVEFIE T0506 116 :PDEVPLAIARYIARYPKAKLY 2fg9A 107 :MEEKRHALDIIMRHYTKDQFS Number of specific fragments extracted= 6 number of extra gaps= 1 total=7655 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1283050577.pdb -s /var/tmp/to_scwrl_1283050577.seq -o /var/tmp/from_scwrl_1283050577.pdb > /var/tmp/scwrl_1283050577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1283050577.pdb Number of alignments=949 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set T0506 40 :AALATLDPVSGYPYTTATNIGIEPD 2fg9A 21 :ACFVGITDLEGNPYVVPMNFGYEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=7656 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1007799413.pdb -s /var/tmp/to_scwrl_1007799413.seq -o /var/tmp/from_scwrl_1007799413.pdb > /var/tmp/scwrl_1007799413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1007799413.pdb Number of alignments=950 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set T0506 39 :TAALATLDPVSGYPYTTATNIGIEPDGT 2fg9A 20 :DACFVGITDLEGNPYVVPMNFGYENDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7657 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_540509459.pdb -s /var/tmp/to_scwrl_540509459.seq -o /var/tmp/from_scwrl_540509459.pdb > /var/tmp/scwrl_540509459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540509459.pdb Number of alignments=951 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A177 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARN 2fg9A 151 :FGLR T0506 175 :SG 2fg9A 155 :AD Number of specific fragments extracted= 11 number of extra gaps= 2 total=7668 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_256148378.pdb -s /var/tmp/to_scwrl_256148378.seq -o /var/tmp/from_scwrl_256148378.pdb > /var/tmp/scwrl_256148378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_256148378.pdb Number of alignments=952 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)D169 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARY 2fg9A 108 :EEKRHALDIIMRHY T0506 131 :PKAKLYLSL 2fg9A 123 :KDQFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK T0506 162 :ASNITPA 2fg9A 150 :VFGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7678 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1783733009.pdb -s /var/tmp/to_scwrl_1783733009.seq -o /var/tmp/from_scwrl_1783733009.pdb > /var/tmp/scwrl_1783733009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783733009.pdb Number of alignments=953 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)D169 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARNAS 2fg9A 151 :FGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7688 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1483042010.pdb -s /var/tmp/to_scwrl_1483042010.seq -o /var/tmp/from_scwrl_1483042010.pdb > /var/tmp/scwrl_1483042010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1483042010.pdb Number of alignments=954 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)N164 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARNAS 2fg9A 151 :FGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7698 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_590596821.pdb -s /var/tmp/to_scwrl_590596821.seq -o /var/tmp/from_scwrl_590596821.pdb > /var/tmp/scwrl_590596821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_590596821.pdb Number of alignments=955 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)N164 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARNAS 2fg9A 151 :FGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7708 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1692288061.pdb -s /var/tmp/to_scwrl_1692288061.seq -o /var/tmp/from_scwrl_1692288061.pdb > /var/tmp/scwrl_1692288061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1692288061.pdb Number of alignments=956 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)N164 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARNAS 2fg9A 151 :FGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7718 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_734010236.pdb -s /var/tmp/to_scwrl_734010236.seq -o /var/tmp/from_scwrl_734010236.pdb > /var/tmp/scwrl_734010236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_734010236.pdb Number of alignments=957 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)N164 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARNAS 2fg9A 151 :FGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7728 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_440617932.pdb -s /var/tmp/to_scwrl_440617932.seq -o /var/tmp/from_scwrl_440617932.pdb > /var/tmp/scwrl_440617932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440617932.pdb Number of alignments=958 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)N164 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARNAS 2fg9A 151 :FGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7738 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1988511008.pdb -s /var/tmp/to_scwrl_1988511008.seq -o /var/tmp/from_scwrl_1988511008.pdb > /var/tmp/scwrl_1988511008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1988511008.pdb Number of alignments=959 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)S175 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 157 :GPAR 2fg9A 153 :LRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7748 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1554615869.pdb -s /var/tmp/to_scwrl_1554615869.seq -o /var/tmp/from_scwrl_1554615869.pdb > /var/tmp/scwrl_1554615869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554615869.pdb Number of alignments=960 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)G157 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 19 :SAGA 2fg9A 5 :VIED T0506 27 :VRVARDVLHTSRTAALATLDP 2fg9A 9 :KQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 103 :PRLTLVGRADRIGP 2fg9A 93 :ESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPKAK 2fg9A 108 :EEKRHALDIIMRHYTKDQ T0506 137 :LSL 2fg9A 126 :FSY T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV Number of specific fragments extracted= 10 number of extra gaps= 2 total=7758 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_11060840.pdb -s /var/tmp/to_scwrl_11060840.seq -o /var/tmp/from_scwrl_11060840.pdb > /var/tmp/scwrl_11060840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_11060840.pdb Number of alignments=961 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 222 :IDLAS 2fg9A 151 :FGLRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=7768 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_559495161.pdb -s /var/tmp/to_scwrl_559495161.seq -o /var/tmp/from_scwrl_559495161.pdb > /var/tmp/scwrl_559495161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559495161.pdb Number of alignments=962 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fg9A)C86 Warning: unaligning (T0506)N164 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 97 :GDALTLPRLTLVGRADRIGP 2fg9A 87 :SYSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQING 2fg9A 134 :RNVKVWKVPVDQMTGKV T0506 158 :PARNAS 2fg9A 151 :FGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7778 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_929216396.pdb -s /var/tmp/to_scwrl_929216396.seq -o /var/tmp/from_scwrl_929216396.pdb > /var/tmp/scwrl_929216396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929216396.pdb Number of alignments=963 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7787 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_797384607.pdb -s /var/tmp/to_scwrl_797384607.seq -o /var/tmp/from_scwrl_797384607.pdb > /var/tmp/scwrl_797384607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797384607.pdb Number of alignments=964 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARY 2fg9A 108 :EEKRHALDIIMRHY T0506 131 :PKAKLYLSL 2fg9A 123 :KDQFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7796 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_711805160.pdb -s /var/tmp/to_scwrl_711805160.seq -o /var/tmp/from_scwrl_711805160.pdb > /var/tmp/scwrl_711805160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_711805160.pdb Number of alignments=965 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7805 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1791315713.pdb -s /var/tmp/to_scwrl_1791315713.seq -o /var/tmp/from_scwrl_1791315713.pdb > /var/tmp/scwrl_1791315713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1791315713.pdb Number of alignments=966 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 12 :RGTKIE 2fg9A -6 :ENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7814 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_379531940.pdb -s /var/tmp/to_scwrl_379531940.seq -o /var/tmp/from_scwrl_379531940.pdb > /var/tmp/scwrl_379531940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_379531940.pdb Number of alignments=967 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 12 :RGTKIE 2fg9A -6 :ENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7823 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1604020265.pdb -s /var/tmp/to_scwrl_1604020265.seq -o /var/tmp/from_scwrl_1604020265.pdb > /var/tmp/scwrl_1604020265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1604020265.pdb Number of alignments=968 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fg9A 7 :EDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 8 number of extra gaps= 1 total=7831 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_108728804.pdb -s /var/tmp/to_scwrl_108728804.seq -o /var/tmp/from_scwrl_108728804.pdb > /var/tmp/scwrl_108728804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_108728804.pdb Number of alignments=969 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7840 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2010610336.pdb -s /var/tmp/to_scwrl_2010610336.seq -o /var/tmp/from_scwrl_2010610336.pdb > /var/tmp/scwrl_2010610336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2010610336.pdb Number of alignments=970 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7849 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1583517596.pdb -s /var/tmp/to_scwrl_1583517596.seq -o /var/tmp/from_scwrl_1583517596.pdb > /var/tmp/scwrl_1583517596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1583517596.pdb Number of alignments=971 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 9 number of extra gaps= 2 total=7858 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1291331612.pdb -s /var/tmp/to_scwrl_1291331612.seq -o /var/tmp/from_scwrl_1291331612.pdb > /var/tmp/scwrl_1291331612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1291331612.pdb Number of alignments=972 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 19 :SAGA 2fg9A 5 :VIED T0506 27 :VRVARDVLHTSRTAALATLDP 2fg9A 9 :KQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 103 :PRLTLVGRADRIGP 2fg9A 93 :ESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPKAK 2fg9A 108 :EEKRHALDIIMRHYTKDQ T0506 137 :LSL 2fg9A 126 :FSY T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 10 number of extra gaps= 2 total=7868 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1766849883.pdb -s /var/tmp/to_scwrl_1766849883.seq -o /var/tmp/from_scwrl_1766849883.pdb > /var/tmp/scwrl_1766849883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766849883.pdb Number of alignments=973 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fg9A 7 :EDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 98 :DALTLPRLTLVGRADRIGP 2fg9A 88 :YSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 8 number of extra gaps= 1 total=7876 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1888839951.pdb -s /var/tmp/to_scwrl_1888839951.seq -o /var/tmp/from_scwrl_1888839951.pdb > /var/tmp/scwrl_1888839951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888839951.pdb Number of alignments=974 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fg9A)C86 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fg9A 7 :EDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGIE 2fg9A 30 :EGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAP 2fg9A 56 :GKIEMLQRNNNVCITFSL T0506 97 :GDALTLPRLTLVGRADRIGP 2fg9A 87 :SYSMRSESAMCRGKVEFIED T0506 117 :DEVPLAIARYIARYPK 2fg9A 108 :EEKRHALDIIMRHYTK T0506 133 :AKLYLSL 2fg9A 125 :QFSYSDP T0506 140 :PDTRLYRLRTEGVQIN 2fg9A 134 :RNVKVWKVPVDQMTGK Number of specific fragments extracted= 8 number of extra gaps= 1 total=7884 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2033041970.pdb -s /var/tmp/to_scwrl_2033041970.seq -o /var/tmp/from_scwrl_2033041970.pdb > /var/tmp/scwrl_2033041970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2033041970.pdb Number of alignments=975 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALA 2fg9A 2 :KTIVIEDKQRIESIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGI 2fg9A 26 :ITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGV 2fg9A 133 :VRNVKVWKVPVDQM T0506 158 :PARNASNITP 2fg9A 147 :TGKVFGLRAD Number of specific fragments extracted= 9 number of extra gaps= 2 total=7893 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_501666970.pdb -s /var/tmp/to_scwrl_501666970.seq -o /var/tmp/from_scwrl_501666970.pdb > /var/tmp/scwrl_501666970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501666970.pdb Number of alignments=976 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITDL T0506 49 :SGYPYTTATNIGI 2fg9A 30 :EGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 2fg9A 109 :EKRHALDIIMRHYTKDQFSYSDPAVRNVKVWKVPVDQMTGKVFGLRAD Number of specific fragments extracted= 7 number of extra gaps= 2 total=7900 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1066853558.pdb -s /var/tmp/to_scwrl_1066853558.seq -o /var/tmp/from_scwrl_1066853558.pdb > /var/tmp/scwrl_1066853558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066853558.pdb Number of alignments=977 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALA 2fg9A 2 :KTIVIEDKQRIESIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGI 2fg9A 26 :ITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARY 2fg9A 110 :KRHALDIIMRHY T0506 133 :AKLYLSLPDTRLYRLRTEGVQINGGPARNASNITP 2fg9A 122 :TKDQFSYSDPAVRNVKVWKVPVDQMTGKVFGLRAD Number of specific fragments extracted= 8 number of extra gaps= 2 total=7908 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_388550417.pdb -s /var/tmp/to_scwrl_388550417.seq -o /var/tmp/from_scwrl_388550417.pdb > /var/tmp/scwrl_388550417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_388550417.pdb Number of alignments=978 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGIT T0506 47 :PVSGYPYTTATNIGI 2fg9A 28 :DLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT T0506 159 :ARNASNITP 2fg9A 148 :GKVFGLRAD Number of specific fragments extracted= 9 number of extra gaps= 2 total=7917 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_864603684.pdb -s /var/tmp/to_scwrl_864603684.seq -o /var/tmp/from_scwrl_864603684.pdb > /var/tmp/scwrl_864603684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864603684.pdb Number of alignments=979 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 8 :VI 2fg9A -11 :HH T0506 10 :TPRGTKIE 2fg9A -8 :HHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGI 2fg9A 29 :LEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 99 :ALTLPRLTLVGRADRIGPDE 2fg9A 89 :SMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT T0506 159 :ARNASNITP 2fg9A 148 :GKVFGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7927 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_202420489.pdb -s /var/tmp/to_scwrl_202420489.seq -o /var/tmp/from_scwrl_202420489.pdb > /var/tmp/scwrl_202420489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202420489.pdb Number of alignments=980 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)S228 because last residue in template chain is (2fg9A)E157 T0506 8 :VITPRGTKIEP 2fg9A -11 :HHHHHENLYFQ T0506 25 :EAVRVARDVLHTSRTAALATL 2fg9A 7 :EDKQRIESIILQADACFVGIT T0506 47 :PVSGYPYTTATNIGIE 2fg9A 28 :DLEGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 100 :LTLPRLTLVGRADRIGPDE 2fg9A 90 :MRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT T0506 159 :ARNAS 2fg9A 148 :GKVFG T0506 224 :LASA 2fg9A 153 :LRAD Number of specific fragments extracted= 10 number of extra gaps= 1 total=7937 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1396349829.pdb -s /var/tmp/to_scwrl_1396349829.seq -o /var/tmp/from_scwrl_1396349829.pdb > /var/tmp/scwrl_1396349829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1396349829.pdb Number of alignments=981 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 8 :VITPRGTKI 2fg9A -11 :HHHHHENLY T0506 17 :E 2fg9A -1 :Q T0506 20 :AGAPFEAVRVARDVLHTSRTAALA 2fg9A 2 :KTIVIEDKQRIESIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGI 2fg9A 26 :ITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT T0506 159 :ARNASNITP 2fg9A 148 :GKVFGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7947 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1405113142.pdb -s /var/tmp/to_scwrl_1405113142.seq -o /var/tmp/from_scwrl_1405113142.pdb > /var/tmp/scwrl_1405113142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1405113142.pdb Number of alignments=982 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 7 :PVITPRGTKIE 2fg9A -11 :HHHHHENLYFQ T0506 20 :AGAPFEAVRVARDVLHTSRTAALA 2fg9A 2 :KTIVIEDKQRIESIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGI 2fg9A 26 :ITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPD 2fg9A 88 :YSMRSESAMCRGKVEFIEDM T0506 118 :EVPLAIARYIARYPKAKLYLS 2fg9A 109 :EKRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGV 2fg9A 133 :VRNVKVWKVPVDQM T0506 158 :PARNASNITP 2fg9A 147 :TGKVFGLRAD Number of specific fragments extracted= 9 number of extra gaps= 2 total=7956 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_458568867.pdb -s /var/tmp/to_scwrl_458568867.seq -o /var/tmp/from_scwrl_458568867.pdb > /var/tmp/scwrl_458568867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_458568867.pdb Number of alignments=983 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 8 :VITPRGTKI 2fg9A -11 :HHHHHENLY T0506 17 :EPSAGAPFEAVR 2fg9A 2 :KTIVIEDKQRIE T0506 32 :DVLHTSRTAALA 2fg9A 14 :SIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGIEPD 2fg9A 26 :ITDLEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 100 :LTLPRLTLVGRADRIGPDE 2fg9A 90 :MRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT T0506 159 :ARNASNITP 2fg9A 148 :GKVFGLRAD Number of specific fragments extracted= 10 number of extra gaps= 1 total=7966 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1032599192.pdb -s /var/tmp/to_scwrl_1032599192.seq -o /var/tmp/from_scwrl_1032599192.pdb > /var/tmp/scwrl_1032599192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1032599192.pdb Number of alignments=984 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)S228 because last residue in template chain is (2fg9A)E157 T0506 8 :VITPRGTK 2fg9A -11 :HHHHHENL T0506 17 :EPSAGAPFEAVR 2fg9A 2 :KTIVIEDKQRIE T0506 32 :DVLHTSRTAALA 2fg9A 14 :SIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGIEPD 2fg9A 26 :ITDLEGNPYVVPMNFGYEND T0506 66 :T 2fg9A 46 :T T0506 68 :FFFAAGL 2fg9A 47 :LYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 102 :LPRLTLVGRADRIGPD 2fg9A 92 :SESAMCRGKVEFIEDM T0506 118 :EVPLAIARYIARYPKAKLYLS 2fg9A 109 :EKRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQIN 2fg9A 133 :VRNVKVWKVPVDQMTGK T0506 161 :NA 2fg9A 150 :VF T0506 223 :DLASA 2fg9A 152 :GLRAD Number of specific fragments extracted= 12 number of extra gaps= 2 total=7978 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_740671507.pdb -s /var/tmp/to_scwrl_740671507.seq -o /var/tmp/from_scwrl_740671507.pdb > /var/tmp/scwrl_740671507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_740671507.pdb Number of alignments=985 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 8 :VITPRGTKI 2fg9A -11 :HHHHHENLY T0506 17 :E 2fg9A -1 :Q T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2fg9A 2 :KTIVIEDKQRIESIILQADACFVGITD T0506 48 :VSGYPYTTATNIGIEPD 2fg9A 29 :LEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 100 :LTLPRLTLVGRADRIGPDE 2fg9A 90 :MRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT T0506 159 :ARNASNITP 2fg9A 148 :GKVFGLRAD Number of specific fragments extracted= 10 number of extra gaps= 2 total=7988 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1049165689.pdb -s /var/tmp/to_scwrl_1049165689.seq -o /var/tmp/from_scwrl_1049165689.pdb > /var/tmp/scwrl_1049165689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1049165689.pdb Number of alignments=986 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)A20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 Warning: unaligning (T0506)A168 because last residue in template chain is (2fg9A)E157 T0506 8 :VITPRGTKIEP 2fg9A -11 :HHHHHENLYFQ T0506 21 :GAPFEAVRVARDVLHTSRT 2fg9A 3 :TIVIEDKQRIESIILQADA T0506 41 :ALATLDPVSGYPYTTATNIGI 2fg9A 22 :CFVGITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 99 :ALTLPRLTLVGRADRIGPDE 2fg9A 89 :SMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT T0506 159 :ARNASNITP 2fg9A 148 :GKVFGLRAD Number of specific fragments extracted= 9 number of extra gaps= 2 total=7997 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_577403606.pdb -s /var/tmp/to_scwrl_577403606.seq -o /var/tmp/from_scwrl_577403606.pdb > /var/tmp/scwrl_577403606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577403606.pdb Number of alignments=987 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 9 :ITPRGT 2fg9A -6 :ENLYFQ T0506 17 :EPSAGAP 2fg9A 2 :KTIVIED T0506 27 :VRVARDVLHTSRTAA 2fg9A 9 :KQRIESIILQADACF T0506 43 :ATLDPVSGYPYTTATNIGI 2fg9A 24 :VGITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLY 2fg9A 110 :KRHALDIIMRHYTKDQFS Number of specific fragments extracted= 8 number of extra gaps= 2 total=8005 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1474681742.pdb -s /var/tmp/to_scwrl_1474681742.seq -o /var/tmp/from_scwrl_1474681742.pdb > /var/tmp/scwrl_1474681742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474681742.pdb Number of alignments=988 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 45 :LDPVSGYPYTTATNIGI 2fg9A 26 :ITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGK 2fg9A 56 :GKIEMLQRNNNVCITFSLGHK Number of specific fragments extracted= 3 number of extra gaps= 1 total=8008 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1489783620.pdb -s /var/tmp/to_scwrl_1489783620.seq -o /var/tmp/from_scwrl_1489783620.pdb > /var/tmp/scwrl_1489783620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489783620.pdb Number of alignments=989 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 43 :ATLDPVSGYPYTTATNIGI 2fg9A 24 :VGITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAI 2fg9A 110 :KRHAL Number of specific fragments extracted= 5 number of extra gaps= 1 total=8013 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_418430968.pdb -s /var/tmp/to_scwrl_418430968.seq -o /var/tmp/from_scwrl_418430968.pdb > /var/tmp/scwrl_418430968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_418430968.pdb Number of alignments=990 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 38 :RTAAL 2fg9A 20 :DACFV T0506 44 :TLDPVSGYPYTTATNIGI 2fg9A 25 :GITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT Number of specific fragments extracted= 7 number of extra gaps= 1 total=8020 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_881813965.pdb -s /var/tmp/to_scwrl_881813965.seq -o /var/tmp/from_scwrl_881813965.pdb > /var/tmp/scwrl_881813965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_881813965.pdb Number of alignments=991 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 29 :VARDVLHTSRTAALA 2fg9A 11 :RIESIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGI 2fg9A 26 :ITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 99 :ALTLPRLTLVGRADRIGPDE 2fg9A 89 :SMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARY 2fg9A 110 :KRHALDII Number of specific fragments extracted= 6 number of extra gaps= 1 total=8026 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1500844460.pdb -s /var/tmp/to_scwrl_1500844460.seq -o /var/tmp/from_scwrl_1500844460.pdb > /var/tmp/scwrl_1500844460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500844460.pdb Number of alignments=992 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 33 :VLHTSRTAAL 2fg9A 15 :IILQADACFV T0506 44 :TLDPVSGYPYTTATNIGIE 2fg9A 25 :GITDLEGNPYVVPMNFGYE T0506 64 :DGTPFFFAAG 2fg9A 44 :NDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 100 :LTLPRLTLVGRADRIGPDE 2fg9A 90 :MRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKA 2fg9A 110 :KRHALDIIMRHYTKD Number of specific fragments extracted= 6 number of extra gaps= 1 total=8032 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_977926129.pdb -s /var/tmp/to_scwrl_977926129.seq -o /var/tmp/from_scwrl_977926129.pdb > /var/tmp/scwrl_977926129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_977926129.pdb Number of alignments=993 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 32 :DVLHTSRTA 2fg9A 14 :SIILQADAC T0506 42 :LATLDPVSGYPYTTATNIGI 2fg9A 23 :FVGITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPDE 2fg9A 88 :YSMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGV 2fg9A 133 :VRNVKVWKVPVDQM Number of specific fragments extracted= 7 number of extra gaps= 1 total=8039 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1811030361.pdb -s /var/tmp/to_scwrl_1811030361.seq -o /var/tmp/from_scwrl_1811030361.pdb > /var/tmp/scwrl_1811030361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1811030361.pdb Number of alignments=994 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 45 :LDPVSGYPYTTATNIGI 2fg9A 26 :ITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 98 :DALTLPRLTLVGRADRIGPD 2fg9A 88 :YSMRSESAMCRGKVEFIEDM T0506 118 :EVPLAIARYIA 2fg9A 109 :EKRHALDIIMR Number of specific fragments extracted= 5 number of extra gaps= 1 total=8044 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_150745421.pdb -s /var/tmp/to_scwrl_150745421.seq -o /var/tmp/from_scwrl_150745421.pdb > /var/tmp/scwrl_150745421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_150745421.pdb Number of alignments=995 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 4 :VAPPVITPRGT 2fg9A -11 :HHHHHENLYFQ T0506 17 :EPSAGAPFEAVR 2fg9A 2 :KTIVIEDKQRIE T0506 32 :DVLHTSRTAALA 2fg9A 14 :SIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGIEPD 2fg9A 26 :ITDLEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 100 :LTLPRLTLVGRADRIGPDE 2fg9A 90 :MRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT Number of specific fragments extracted= 9 number of extra gaps= 2 total=8053 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1689731288.pdb -s /var/tmp/to_scwrl_1689731288.seq -o /var/tmp/from_scwrl_1689731288.pdb > /var/tmp/scwrl_1689731288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1689731288.pdb Number of alignments=996 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2fg9A)H-12 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fg9A)M1 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fg9A)M1 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 4 :VAPPVITPRGT 2fg9A -11 :HHHHHENLYFQ T0506 17 :EPSAGAPFEAVR 2fg9A 2 :KTIVIEDKQRIE T0506 32 :DVLHTSRTAALA 2fg9A 14 :SIILQADACFVG T0506 45 :LDPVSGYPYTTATNIGIEPD 2fg9A 26 :ITDLEGNPYVVPMNFGYEND T0506 66 :T 2fg9A 46 :T T0506 68 :FFFAAGL 2fg9A 47 :LYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 102 :LPRLTLVGRADRIGPD 2fg9A 92 :SESAMCRGKVEFIEDM T0506 118 :EVPLAIARYIARYPKAKLYLS 2fg9A 109 :EKRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQI 2fg9A 133 :VRNVKVWKVPVDQMTG Number of specific fragments extracted= 10 number of extra gaps= 2 total=8063 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1454862427.pdb -s /var/tmp/to_scwrl_1454862427.seq -o /var/tmp/from_scwrl_1454862427.pdb > /var/tmp/scwrl_1454862427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1454862427.pdb Number of alignments=997 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 30 :ARDVLHTSRTAALAT 2fg9A 12 :IESIILQADACFVGI T0506 46 :DPVSGYPYTTATNIGIEPD 2fg9A 27 :TDLEGNPYVVPMNFGYEND T0506 66 :TPFFFAAG 2fg9A 46 :TLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 100 :LTLPRLTLVGRADRIGPDE 2fg9A 90 :MRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPKAKLYLS 2fg9A 110 :KRHALDIIMRHYTKDQFSYS T0506 139 :LPDTRLYRLRTEGVQ 2fg9A 133 :VRNVKVWKVPVDQMT Number of specific fragments extracted= 7 number of extra gaps= 1 total=8070 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_530277361.pdb -s /var/tmp/to_scwrl_530277361.seq -o /var/tmp/from_scwrl_530277361.pdb > /var/tmp/scwrl_530277361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530277361.pdb Number of alignments=998 # 2fg9A read from all-align.a2m # found chain 2fg9A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (2fg9A)G55 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (2fg9A)G55 T0506 34 :LHTS 2fg9A 16 :ILQA T0506 39 :TAALATLDPVSGYPYTTATNIGI 2fg9A 20 :DACFVGITDLEGNPYVVPMNFGY T0506 63 :PDGTPFFFAAG 2fg9A 43 :ENDTLYLHSGP T0506 76 :LHARNMETDARISVTLAPFGKG 2fg9A 56 :GKIEMLQRNNNVCITFSLGHKL T0506 99 :ALTLPRLTLVGRADRIGPDE 2fg9A 89 :SMRSESAMCRGKVEFIEDME T0506 119 :VPLAIARYIARYPK 2fg9A 110 :KRHALDIIMRHYTK Number of specific fragments extracted= 6 number of extra gaps= 1 total=8076 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1146267906.pdb -s /var/tmp/to_scwrl_1146267906.seq -o /var/tmp/from_scwrl_1146267906.pdb > /var/tmp/scwrl_1146267906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1146267906.pdb Number of alignments=999 2fhqA expands to /projects/compbio/data/pdb/2fhq.pdb.gz 2fhqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 121, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 123, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 125, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 127, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 2fhqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 2fhqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 2fhqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 2fhqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 2fhqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 2fhqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 2fhqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 713, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 715, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 719, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 949, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 2fhqA Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 2fhqA # 2fhqA read from all-align.a2m # adding 2fhqA to template set # found chain 2fhqA in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)L252 because last residue in template chain is (2fhqA)L137 T0506 7 :PVITPR 2fhqA 4 :KTMKEK T0506 30 :ARDVLHTSRTAALATLDP 2fhqA 10 :AVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPF 2fhqA 28 :EGYPRPVPMSKIAAEGISTI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 2fhqA 49 :MSTGADSLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRI 2fhqA 78 :VALMGEVEVV T0506 115 :GPDEVPLAIARYIARYPK 2fhqA 89 :DEKLKQELWQDWFIEHFP T0506 223 :DLASASDLARLWF 2fhqA 107 :GGPTDPGYVLLKF T0506 236 :AERVETLKQFEKALAQ 2fhqA 121 :ANHATYWIEGTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8084 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1563591231.pdb -s /var/tmp/to_scwrl_1563591231.seq -o /var/tmp/from_scwrl_1563591231.pdb > /var/tmp/scwrl_1563591231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1563591231.pdb Number of alignments=1000 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)L252 because last residue in template chain is (2fhqA)L137 T0506 11 :PR 2fhqA 4 :KT T0506 30 :ARDVLHTSRTAALATLDP 2fhqA 10 :AVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPF 2fhqA 28 :EGYPRPVPMSKIAAEGISTI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFG 2fhqA 49 :MSTGADSLKTIDFLSNPKAGLCFQEKG T0506 105 :LTLVGRADRIGPDEVP 2fhqA 78 :VALMGEVEVVTDEKLK T0506 121 :LAIARYIARYPK 2fhqA 95 :ELWQDWFIEHFP T0506 225 :ASASDLARLW 2fhqA 109 :PTDPGYVLLK T0506 235 :FAERVETLKQFEKALAQ 2fhqA 120 :TANHATYWIEGTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8092 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_393404051.pdb -s /var/tmp/to_scwrl_393404051.seq -o /var/tmp/from_scwrl_393404051.pdb > /var/tmp/scwrl_393404051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_393404051.pdb Number of alignments=1001 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 31 :RDVLHTSRTAALATLDP 2fhqA 11 :VELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPF 2fhqA 28 :EGYPRPVPMSKIAAEGISTI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 2fhqA 49 :MSTGADSLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDEV 2fhqA 78 :VALMGEVEVVTDEKL T0506 123 :IARYIARYPKAKL 2fhqA 93 :KQELWQDWFIEHF T0506 136 :YLSLPDTRLYRLRTEGVQINGGP 2fhqA 108 :GPTDPGYVLLKFTANHATYWIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=8098 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_582301857.pdb -s /var/tmp/to_scwrl_582301857.seq -o /var/tmp/from_scwrl_582301857.pdb > /var/tmp/scwrl_582301857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_582301857.pdb Number of alignments=1002 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 31 :RDVLHTSRTAALATLDP 2fhqA 11 :VELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPF 2fhqA 28 :EGYPRPVPMSKIAAEGISTI T0506 69 :FFAAGLTLHARNMETDARISVTLAPFG 2fhqA 49 :MSTGADSLKTIDFLSNPKAGLCFQEKG T0506 105 :LTLVGRADRIGPDEV 2fhqA 78 :VALMGEVEVVTDEKL T0506 123 :IARYIARYPKAK 2fhqA 93 :KQELWQDWFIEH T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2fhqA 107 :GGPTDPGYVLLKFTANHATYWIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=8104 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_707439198.pdb -s /var/tmp/to_scwrl_707439198.seq -o /var/tmp/from_scwrl_707439198.pdb > /var/tmp/scwrl_707439198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_707439198.pdb Number of alignments=1003 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)I165 because last residue in template chain is (2fhqA)L137 T0506 1 :ML 2fhqA 3 :TK T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fhqA 5 :TMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIE 2fhqA 28 :EGYPRPVPMSKIAA T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 43 :GISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIARYPK 2fhqA 76 :DSVALMGEVEVVTDEKLKQELWQDWFIEHF T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 2fhqA 106 :PGGPTDPGYVLLKFTANHATYWIEGTFIHKK Number of specific fragments extracted= 6 number of extra gaps= 0 total=8110 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_12770287.pdb -s /var/tmp/to_scwrl_12770287.seq -o /var/tmp/from_scwrl_12770287.pdb > /var/tmp/scwrl_12770287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12770287.pdb Number of alignments=1004 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)I165 because last residue in template chain is (2fhqA)L137 T0506 1 :ML 2fhqA 3 :TK T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fhqA 5 :TMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIE 2fhqA 28 :EGYPRPVPMSKIAA T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 43 :GISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDEVPLA 2fhqA 76 :DSVALMGEVEVVTDEKLKQE T0506 123 :IARYIARYP 2fhqA 97 :WQDWFIEHF T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGPARNASN 2fhqA 106 :PGGPTDPGYVLLKFTANHATYWIEGTFIHKK Number of specific fragments extracted= 7 number of extra gaps= 0 total=8117 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_323658161.pdb -s /var/tmp/to_scwrl_323658161.seq -o /var/tmp/from_scwrl_323658161.pdb > /var/tmp/scwrl_323658161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323658161.pdb Number of alignments=1005 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 32 :DVLHTSRTAALATLDP 2fhqA 12 :ELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIE 2fhqA 28 :EGYPRPVPMSKIAA T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 43 :GISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDEV 2fhqA 76 :DSVALMGEVEVVTDEKL Number of specific fragments extracted= 4 number of extra gaps= 0 total=8121 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_592997521.pdb -s /var/tmp/to_scwrl_592997521.seq -o /var/tmp/from_scwrl_592997521.pdb > /var/tmp/scwrl_592997521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_592997521.pdb Number of alignments=1006 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 31 :RDVLHTSRTAALATLDP 2fhqA 11 :VELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIE 2fhqA 28 :EGYPRPVPMSKIAA T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 43 :GISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDEVPLAI 2fhqA 76 :DSVALMGEVEVVTDEKLKQEL T0506 124 :ARYIARYP 2fhqA 98 :QDWFIEHF T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2fhqA 106 :PGGPTDPGYVLLKFTANHATYW Number of specific fragments extracted= 6 number of extra gaps= 0 total=8127 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_514437258.pdb -s /var/tmp/to_scwrl_514437258.seq -o /var/tmp/from_scwrl_514437258.pdb > /var/tmp/scwrl_514437258.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514437258.pdb Number of alignments=1007 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 227 :ASDLARLWFAERVETLKQFE 2fhqA 41 :AEGISTIWMSTGADSLKTID Number of specific fragments extracted= 1 number of extra gaps= 0 total=8128 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1390511718.pdb -s /var/tmp/to_scwrl_1390511718.seq -o /var/tmp/from_scwrl_1390511718.pdb > /var/tmp/scwrl_1390511718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1390511718.pdb Number of alignments=1008 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=8128 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)R171 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQING 2fhqA 109 :PTDPGYVLLKFTANHATYWI T0506 158 :PAR 2fhqA 129 :EGT T0506 166 :TPADL 2fhqA 132 :FIHKK Number of specific fragments extracted= 10 number of extra gaps= 0 total=8138 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_981547938.pdb -s /var/tmp/to_scwrl_981547938.seq -o /var/tmp/from_scwrl_981547938.pdb > /var/tmp/scwrl_981547938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_981547938.pdb Number of alignments=1009 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)R171 because last residue in template chain is (2fhqA)L137 T0506 25 :EAVRV 2fhqA 4 :KTMKE T0506 30 :ARDVLHTSRTAALATLD 2fhqA 10 :AVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 162 :ASNITPADL 2fhqA 128 :IEGTFIHKK Number of specific fragments extracted= 10 number of extra gaps= 0 total=8148 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1379040941.pdb -s /var/tmp/to_scwrl_1379040941.seq -o /var/tmp/from_scwrl_1379040941.pdb > /var/tmp/scwrl_1379040941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1379040941.pdb Number of alignments=1010 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)R171 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 162 :ASNITPADL 2fhqA 128 :IEGTFIHKK Number of specific fragments extracted= 9 number of extra gaps= 0 total=8157 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1592932207.pdb -s /var/tmp/to_scwrl_1592932207.seq -o /var/tmp/from_scwrl_1592932207.pdb > /var/tmp/scwrl_1592932207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1592932207.pdb Number of alignments=1011 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)P167 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIEPD 2fhqA 27 :KEGYPRPVPMSKIAAEG T0506 66 :T 2fhqA 44 :I T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQING 2fhqA 109 :PTDPGYVLLKFTANHATYWI T0506 158 :PARNASN 2fhqA 129 :EGTFIHK T0506 166 :T 2fhqA 136 :K Number of specific fragments extracted= 10 number of extra gaps= 0 total=8167 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_230414121.pdb -s /var/tmp/to_scwrl_230414121.seq -o /var/tmp/from_scwrl_230414121.pdb > /var/tmp/scwrl_230414121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_230414121.pdb Number of alignments=1012 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)P167 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 156 :GGP 2fhqA 130 :GTF T0506 162 :ASN 2fhqA 133 :IHK T0506 166 :T 2fhqA 136 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=8178 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_636670438.pdb -s /var/tmp/to_scwrl_636670438.seq -o /var/tmp/from_scwrl_636670438.pdb > /var/tmp/scwrl_636670438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636670438.pdb Number of alignments=1013 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 41 :AEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQING 2fhqA 109 :PTDPGYVLLKFTANHATYWI T0506 158 :PARNASNI 2fhqA 129 :EGTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8186 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2051501075.pdb -s /var/tmp/to_scwrl_2051501075.seq -o /var/tmp/from_scwrl_2051501075.pdb > /var/tmp/scwrl_2051501075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2051501075.pdb Number of alignments=1014 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 158 :PARNASNI 2fhqA 129 :EGTFIHKK Number of specific fragments extracted= 9 number of extra gaps= 0 total=8195 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1263013312.pdb -s /var/tmp/to_scwrl_1263013312.seq -o /var/tmp/from_scwrl_1263013312.pdb > /var/tmp/scwrl_1263013312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1263013312.pdb Number of alignments=1015 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)I165 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIEPD 2fhqA 27 :KEGYPRPVPMSKIAAEG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 159 :ARNASN 2fhqA 130 :GTFIHK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8203 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1377341944.pdb -s /var/tmp/to_scwrl_1377341944.seq -o /var/tmp/from_scwrl_1377341944.pdb > /var/tmp/scwrl_1377341944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377341944.pdb Number of alignments=1016 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)I165 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IE 2fhqA 41 :AE T0506 64 :D 2fhqA 43 :G T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQING 2fhqA 109 :PTDPGYVLLKFTANHATYWI T0506 158 :PARNAS 2fhqA 129 :EGTFIH T0506 164 :N 2fhqA 136 :K Number of specific fragments extracted= 11 number of extra gaps= 0 total=8214 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_953183117.pdb -s /var/tmp/to_scwrl_953183117.seq -o /var/tmp/from_scwrl_953183117.pdb > /var/tmp/scwrl_953183117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953183117.pdb Number of alignments=1017 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)I165 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IEP 2fhqA 41 :AEG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAP 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQE T0506 96 :KG 2fhqA 74 :KG T0506 103 :PRLTLVGRADRIGP 2fhqA 76 :DSVALMGEVEVVTD T0506 117 :D 2fhqA 91 :K T0506 125 :RYIARY 2fhqA 92 :LKQELW T0506 131 :PKAKLYLSL 2fhqA 99 :DWFIEHFPG T0506 140 :PDTRLYRLRTEGVQINGGPARNASN 2fhqA 112 :PGYVLLKFTANHATYWIEGTFIHKK Number of specific fragments extracted= 10 number of extra gaps= 0 total=8224 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1840416919.pdb -s /var/tmp/to_scwrl_1840416919.seq -o /var/tmp/from_scwrl_1840416919.pdb > /var/tmp/scwrl_1840416919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1840416919.pdb Number of alignments=1018 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)I217 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 41 :AEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQING 2fhqA 109 :PTDPGYVLLKFTANHATYWI T0506 158 :PARNASN 2fhqA 129 :EGTFIHK T0506 216 :S 2fhqA 136 :K Number of specific fragments extracted= 9 number of extra gaps= 0 total=8233 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_704540040.pdb -s /var/tmp/to_scwrl_704540040.seq -o /var/tmp/from_scwrl_704540040.pdb > /var/tmp/scwrl_704540040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704540040.pdb Number of alignments=1019 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIEPD 2fhqA 27 :KEGYPRPVPMSKIAAEG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 159 :ARNASNI 2fhqA 130 :GTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8241 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_295483090.pdb -s /var/tmp/to_scwrl_295483090.seq -o /var/tmp/from_scwrl_295483090.pdb > /var/tmp/scwrl_295483090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295483090.pdb Number of alignments=1020 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 8 number of extra gaps= 0 total=8249 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_111364240.pdb -s /var/tmp/to_scwrl_111364240.seq -o /var/tmp/from_scwrl_111364240.pdb > /var/tmp/scwrl_111364240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_111364240.pdb Number of alignments=1021 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 8 number of extra gaps= 0 total=8257 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1586354005.pdb -s /var/tmp/to_scwrl_1586354005.seq -o /var/tmp/from_scwrl_1586354005.pdb > /var/tmp/scwrl_1586354005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1586354005.pdb Number of alignments=1022 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 8 number of extra gaps= 0 total=8265 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1796327551.pdb -s /var/tmp/to_scwrl_1796327551.seq -o /var/tmp/from_scwrl_1796327551.pdb > /var/tmp/scwrl_1796327551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1796327551.pdb Number of alignments=1023 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2fhqA 5 :TMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIEPD 2fhqA 27 :KEGYPRPVPMSKIAAEG T0506 66 :T 2fhqA 44 :I T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 8 number of extra gaps= 0 total=8273 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1089290368.pdb -s /var/tmp/to_scwrl_1089290368.seq -o /var/tmp/from_scwrl_1089290368.pdb > /var/tmp/scwrl_1089290368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1089290368.pdb Number of alignments=1024 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 8 number of extra gaps= 0 total=8281 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1249900719.pdb -s /var/tmp/to_scwrl_1249900719.seq -o /var/tmp/from_scwrl_1249900719.pdb > /var/tmp/scwrl_1249900719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1249900719.pdb Number of alignments=1025 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 41 :AEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 7 number of extra gaps= 0 total=8288 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1947072972.pdb -s /var/tmp/to_scwrl_1947072972.seq -o /var/tmp/from_scwrl_1947072972.pdb > /var/tmp/scwrl_1947072972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1947072972.pdb Number of alignments=1026 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIE 2fhqA 27 :KEGYPRPVPMSKIAA T0506 64 :DGT 2fhqA 42 :EGI T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 47 :IWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 8 number of extra gaps= 0 total=8296 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_631538010.pdb -s /var/tmp/to_scwrl_631538010.seq -o /var/tmp/from_scwrl_631538010.pdb > /var/tmp/scwrl_631538010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_631538010.pdb Number of alignments=1027 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIEPD 2fhqA 27 :KEGYPRPVPMSKIAAEG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAIA 2fhqA 93 :KQELWQ T0506 125 :RYIARYPKA 2fhqA 100 :WFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 7 number of extra gaps= 0 total=8303 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_557279500.pdb -s /var/tmp/to_scwrl_557279500.seq -o /var/tmp/from_scwrl_557279500.pdb > /var/tmp/scwrl_557279500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557279500.pdb Number of alignments=1028 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IE 2fhqA 41 :AE T0506 64 :D 2fhqA 43 :G T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQING 2fhqA 109 :PTDPGYVLLKFTANHATYWI Number of specific fragments extracted= 9 number of extra gaps= 0 total=8312 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_329866686.pdb -s /var/tmp/to_scwrl_329866686.seq -o /var/tmp/from_scwrl_329866686.pdb > /var/tmp/scwrl_329866686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329866686.pdb Number of alignments=1029 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IEP 2fhqA 41 :AEG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAP 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQE T0506 96 :KG 2fhqA 74 :KG T0506 103 :PRLTLVGRADRIGP 2fhqA 76 :DSVALMGEVEVVTD T0506 117 :D 2fhqA 91 :K T0506 125 :RYIARY 2fhqA 92 :LKQELW T0506 131 :PKAKLYLSL 2fhqA 99 :DWFIEHFPG T0506 140 :PDTRLYRLRTEGVQING 2fhqA 112 :PGYVLLKFTANHATYWI T0506 158 :PA 2fhqA 129 :EG Number of specific fragments extracted= 11 number of extra gaps= 0 total=8323 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1777805916.pdb -s /var/tmp/to_scwrl_1777805916.seq -o /var/tmp/from_scwrl_1777805916.pdb > /var/tmp/scwrl_1777805916.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1777805916.pdb Number of alignments=1030 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIG 2fhqA 27 :KEGYPRPVPMSKI T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 41 :AEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 7 number of extra gaps= 0 total=8330 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2120870732.pdb -s /var/tmp/to_scwrl_2120870732.seq -o /var/tmp/from_scwrl_2120870732.pdb > /var/tmp/scwrl_2120870732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2120870732.pdb Number of alignments=1031 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVN T0506 48 :VSGYPYTTATNIGIEPD 2fhqA 27 :KEGYPRPVPMSKIAAEG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFG 2fhqA 45 :STIWMSTGADSLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDE 2fhqA 76 :DSVALMGEVEVVTDEK T0506 119 :VPLAI 2fhqA 93 :KQELW T0506 124 :ARYIARYPKA 2fhqA 99 :DWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 7 number of extra gaps= 0 total=8337 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_723270737.pdb -s /var/tmp/to_scwrl_723270737.seq -o /var/tmp/from_scwrl_723270737.pdb > /var/tmp/scwrl_723270737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_723270737.pdb Number of alignments=1032 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)Q244 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGI 2fhqA 28 :EGYPRPVPMSKIA T0506 63 :PDGTPFFFAAGL 2fhqA 41 :AEGISTIWMSTG T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKAKLYLSL 2fhqA 94 :QELWQDWFIEHFPGGPTDPGY T0506 143 :RLYRLRTEG 2fhqA 115 :VLLKFTANH T0506 231 :ARLWFAERVETLK 2fhqA 124 :ATYWIEGTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8345 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_212624126.pdb -s /var/tmp/to_scwrl_212624126.seq -o /var/tmp/from_scwrl_212624126.pdb > /var/tmp/scwrl_212624126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_212624126.pdb Number of alignments=1033 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)L253 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 225 :ASASDLARLWFAERVETLKQFEKALAQL 2fhqA 109 :PTDPGYVLLKFTANHATYWIEGTFIHKK Number of specific fragments extracted= 6 number of extra gaps= 0 total=8351 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_680826283.pdb -s /var/tmp/to_scwrl_680826283.seq -o /var/tmp/from_scwrl_680826283.pdb > /var/tmp/scwrl_680826283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_680826283.pdb Number of alignments=1034 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)L253 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGI 2fhqA 28 :EGYPRPVPMSKIA T0506 63 :PDGTPFFFAAGL 2fhqA 41 :AEGISTIWMSTG T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKAKLYLSL 2fhqA 94 :QELWQDWFIEHFPGGPTDPGY T0506 143 :RLYRLRTEGVQ 2fhqA 115 :VLLKFTANHAT T0506 162 :ASNIT 2fhqA 126 :YWIEG T0506 247 :KALAQL 2fhqA 131 :TFIHKK Number of specific fragments extracted= 9 number of extra gaps= 0 total=8360 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_736041025.pdb -s /var/tmp/to_scwrl_736041025.seq -o /var/tmp/from_scwrl_736041025.pdb > /var/tmp/scwrl_736041025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_736041025.pdb Number of alignments=1035 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGV 2fhqA 109 :PTDPGYVLLKFTANHA T0506 153 :QINGG 2fhqA 126 :YWIEG T0506 160 :RNASNI 2fhqA 131 :TFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8368 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_536282287.pdb -s /var/tmp/to_scwrl_536282287.seq -o /var/tmp/from_scwrl_536282287.pdb > /var/tmp/scwrl_536282287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536282287.pdb Number of alignments=1036 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEP 2fhqA 28 :EGYPRPVPMSKIAAE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2fhqA 44 :ISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 156 :GG 2fhqA 129 :EG T0506 160 :RNASNI 2fhqA 131 :TFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8376 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1273823803.pdb -s /var/tmp/to_scwrl_1273823803.seq -o /var/tmp/from_scwrl_1273823803.pdb > /var/tmp/scwrl_1273823803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273823803.pdb Number of alignments=1037 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)I217 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATN 2fhqA 28 :EGYPRPVPMS T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2fhqA 39 :IAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGD T0506 104 :RLTLVGRADRIGPDE 2fhqA 77 :SVALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGV 2fhqA 109 :PTDPGYVLLKFTANHA T0506 153 :QINGGP 2fhqA 126 :YWIEGT T0506 212 :WKITS 2fhqA 132 :FIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8384 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1250478282.pdb -s /var/tmp/to_scwrl_1250478282.seq -o /var/tmp/from_scwrl_1250478282.pdb > /var/tmp/scwrl_1250478282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1250478282.pdb Number of alignments=1038 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMST T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2fhqA 53 :ADSLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGV 2fhqA 109 :PTDPGYVLLKFTANHA T0506 153 :QINGG 2fhqA 126 :YWIEG T0506 160 :RNASNI 2fhqA 131 :TFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8392 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1926794006.pdb -s /var/tmp/to_scwrl_1926794006.seq -o /var/tmp/from_scwrl_1926794006.pdb > /var/tmp/scwrl_1926794006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1926794006.pdb Number of alignments=1039 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)L174 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPD 2fhqA 78 :VALMGEVEVVTDE T0506 118 :EVPLAIARYIARYPKA 2fhqA 93 :KQELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQI 2fhqA 109 :PTDPGYVLLKFTANHATY T0506 163 :SNITPADLR 2fhqA 127 :WIEGTFIHK T0506 173 :D 2fhqA 136 :K Number of specific fragments extracted= 8 number of extra gaps= 0 total=8400 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_107888095.pdb -s /var/tmp/to_scwrl_107888095.seq -o /var/tmp/from_scwrl_107888095.pdb > /var/tmp/scwrl_107888095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107888095.pdb Number of alignments=1040 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)F235 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDEVPL 2fhqA 76 :DSVALMGEVEVVTDEKLKQ T0506 126 :YIARYPKA 2fhqA 101 :FIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 226 :SASDLARLW 2fhqA 128 :IEGTFIHKK Number of specific fragments extracted= 7 number of extra gaps= 0 total=8407 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_482035577.pdb -s /var/tmp/to_scwrl_482035577.seq -o /var/tmp/from_scwrl_482035577.pdb > /var/tmp/scwrl_482035577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482035577.pdb Number of alignments=1041 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)F235 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPD 2fhqA 76 :DSVALMGEVEVVTDE T0506 120 :PLAIA 2fhqA 91 :KLKQE T0506 129 :RYPKAKLYLS 2fhqA 97 :WQDWFIEHFP T0506 139 :LPDTRLYRLRTEGVQI 2fhqA 111 :DPGYVLLKFTANHATY T0506 225 :ASASDLARLW 2fhqA 127 :WIEGTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8415 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1372242566.pdb -s /var/tmp/to_scwrl_1372242566.seq -o /var/tmp/from_scwrl_1372242566.pdb > /var/tmp/scwrl_1372242566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1372242566.pdb Number of alignments=1042 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGK 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGD T0506 104 :RLTLVGRADRIGPDE 2fhqA 77 :SVALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW T0506 156 :G 2fhqA 129 :E T0506 159 :ARNASNI 2fhqA 130 :GTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8423 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_338302216.pdb -s /var/tmp/to_scwrl_338302216.seq -o /var/tmp/from_scwrl_338302216.pdb > /var/tmp/scwrl_338302216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_338302216.pdb Number of alignments=1043 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)T166 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATN 2fhqA 28 :EGYPRPVPMS T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2fhqA 39 :IAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGD T0506 104 :RLTLVGRADRIGPDE 2fhqA 77 :SVALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGV 2fhqA 109 :PTDPGYVLLKFTANHA T0506 153 :QINGG 2fhqA 126 :YWIEG T0506 160 :RNASNI 2fhqA 131 :TFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8431 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1118706014.pdb -s /var/tmp/to_scwrl_1118706014.seq -o /var/tmp/from_scwrl_1118706014.pdb > /var/tmp/scwrl_1118706014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118706014.pdb Number of alignments=1044 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 26 :AVRVARDVLHTSRTAALATLDP 2fhqA 6 :MKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGI 2fhqA 28 :EGYPRPVPMSKIA T0506 63 :PDGTPFFFAAGL 2fhqA 41 :AEGISTIWMSTG T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKAKLYL 2fhqA 94 :QELWQDWFIEHFPGGPTDP Number of specific fragments extracted= 6 number of extra gaps= 0 total=8437 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1276259994.pdb -s /var/tmp/to_scwrl_1276259994.seq -o /var/tmp/from_scwrl_1276259994.pdb > /var/tmp/scwrl_1276259994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276259994.pdb Number of alignments=1045 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 33 :VLHTSRTAALATLDP 2fhqA 13 :LLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPK 2fhqA 94 :QELWQDWFIEHFPG Number of specific fragments extracted= 5 number of extra gaps= 0 total=8442 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1601315528.pdb -s /var/tmp/to_scwrl_1601315528.seq -o /var/tmp/from_scwrl_1601315528.pdb > /var/tmp/scwrl_1601315528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1601315528.pdb Number of alignments=1046 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 28 :RVARDVLHTSRTAALATLDP 2fhqA 8 :EKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGI 2fhqA 28 :EGYPRPVPMSKIA T0506 63 :PDGTPFFFAAGL 2fhqA 41 :AEGISTIWMSTG T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKAK 2fhqA 94 :QELWQDWFIEHFPGGP Number of specific fragments extracted= 6 number of extra gaps= 0 total=8448 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_348564312.pdb -s /var/tmp/to_scwrl_348564312.seq -o /var/tmp/from_scwrl_348564312.pdb > /var/tmp/scwrl_348564312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_348564312.pdb Number of alignments=1047 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 26 :AVRVARDVLHTSRTAALATLDP 2fhqA 6 :MKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQI 2fhqA 109 :PTDPGYVLLKFTANHATY Number of specific fragments extracted= 6 number of extra gaps= 0 total=8454 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_81959464.pdb -s /var/tmp/to_scwrl_81959464.seq -o /var/tmp/from_scwrl_81959464.pdb > /var/tmp/scwrl_81959464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_81959464.pdb Number of alignments=1048 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 26 :AVRVARDVLHTSRTAALATLDP 2fhqA 6 :MKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEP 2fhqA 28 :EGYPRPVPMSKIAAE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2fhqA 44 :ISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQI 2fhqA 109 :PTDPGYVLLKFTANHATY Number of specific fragments extracted= 6 number of extra gaps= 0 total=8460 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1294248800.pdb -s /var/tmp/to_scwrl_1294248800.seq -o /var/tmp/from_scwrl_1294248800.pdb > /var/tmp/scwrl_1294248800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1294248800.pdb Number of alignments=1049 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fhqA 5 :TMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATN 2fhqA 28 :EGYPRPVPMS T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2fhqA 39 :IAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGD T0506 104 :RLTLVGRADRIGPDE 2fhqA 77 :SVALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQI 2fhqA 109 :PTDPGYVLLKFTANHATY Number of specific fragments extracted= 6 number of extra gaps= 0 total=8466 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1053104353.pdb -s /var/tmp/to_scwrl_1053104353.seq -o /var/tmp/from_scwrl_1053104353.pdb > /var/tmp/scwrl_1053104353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053104353.pdb Number of alignments=1050 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 26 :AVRVARDVLHTSRTAALATLDP 2fhqA 6 :MKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMST T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2fhqA 53 :ADSLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPDE 2fhqA 78 :VALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQI 2fhqA 109 :PTDPGYVLLKFTANHATY Number of specific fragments extracted= 6 number of extra gaps= 0 total=8472 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_377442555.pdb -s /var/tmp/to_scwrl_377442555.seq -o /var/tmp/from_scwrl_377442555.pdb > /var/tmp/scwrl_377442555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_377442555.pdb Number of alignments=1051 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 27 :VRVARDVLHTSRTAALATLDP 2fhqA 7 :KEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGKG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGDS T0506 105 :LTLVGRADRIGPD 2fhqA 78 :VALMGEVEVVTDE T0506 118 :EVPLAIARYIARYPKA 2fhqA 93 :KQELWQDWFIEHFPGG Number of specific fragments extracted= 5 number of extra gaps= 0 total=8477 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1405613040.pdb -s /var/tmp/to_scwrl_1405613040.seq -o /var/tmp/from_scwrl_1405613040.pdb > /var/tmp/scwrl_1405613040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1405613040.pdb Number of alignments=1052 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPDEVPL 2fhqA 76 :DSVALMGEVEVVTDEKLKQ T0506 126 :YIARYPKA 2fhqA 101 :FIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 6 number of extra gaps= 0 total=8483 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_491974711.pdb -s /var/tmp/to_scwrl_491974711.seq -o /var/tmp/from_scwrl_491974711.pdb > /var/tmp/scwrl_491974711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_491974711.pdb Number of alignments=1053 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2fhqA)T3 Warning: unaligning (T0506)F235 because last residue in template chain is (2fhqA)L137 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2fhqA 4 :KTMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFG 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKG T0506 103 :PRLTLVGRADRIGPD 2fhqA 76 :DSVALMGEVEVVTDE T0506 120 :PLAIA 2fhqA 91 :KLKQE T0506 129 :RYPKAKLYLS 2fhqA 97 :WQDWFIEHFP T0506 139 :LPDTRLYRLRTEGVQI 2fhqA 111 :DPGYVLLKFTANHATY T0506 225 :ASASDLARLW 2fhqA 127 :WIEGTFIHKK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8491 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_26286459.pdb -s /var/tmp/to_scwrl_26286459.seq -o /var/tmp/from_scwrl_26286459.pdb > /var/tmp/scwrl_26286459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_26286459.pdb Number of alignments=1054 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fhqA 5 :TMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2fhqA 28 :EGYPRPVPMSKIAAEGISTIWMSTGA T0506 75 :TLHARNMETDARISVTLAPFGK 2fhqA 55 :SLKTIDFLSNPKAGLCFQEKGD T0506 104 :RLTLVGRADRIGPDE 2fhqA 77 :SVALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2fhqA 109 :PTDPGYVLLKFTANHATYW Number of specific fragments extracted= 6 number of extra gaps= 0 total=8497 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_347419762.pdb -s /var/tmp/to_scwrl_347419762.seq -o /var/tmp/from_scwrl_347419762.pdb > /var/tmp/scwrl_347419762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347419762.pdb Number of alignments=1055 # 2fhqA read from all-align.a2m # found chain 2fhqA in template set T0506 25 :EAVRVARDVLHTSRTAALATLDP 2fhqA 5 :TMKEKAVELLQKCEVVTLASVNK T0506 49 :SGYPYTTATN 2fhqA 28 :EGYPRPVPMS T0506 59 :IGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2fhqA 39 :IAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGD T0506 104 :RLTLVGRADRIGPDE 2fhqA 77 :SVALMGEVEVVTDEK T0506 119 :VPLAIARYIARYPKA 2fhqA 94 :QELWQDWFIEHFPGG T0506 137 :LSLPDTRLYRLRTEGVQI 2fhqA 109 :PTDPGYVLLKFTANHATY Number of specific fragments extracted= 6 number of extra gaps= 0 total=8503 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1741875430.pdb -s /var/tmp/to_scwrl_1741875430.seq -o /var/tmp/from_scwrl_1741875430.pdb > /var/tmp/scwrl_1741875430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1741875430.pdb Number of alignments=1056 2furA expands to /projects/compbio/data/pdb/2fur.pdb.gz 2furA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 253, because occupancy 0.500 <= existing 0.500 in 2furA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 255, because occupancy 0.500 <= existing 0.500 in 2furA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 2furA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 265, because occupancy 0.500 <= existing 0.500 in 2furA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 2furA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 2furA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 713, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 715, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 719, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 2furA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1323, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 1325, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 1327, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 1329, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 1331, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 1347, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 1349, because occupancy 0.500 <= existing 0.500 in 2furA Skipped atom 1351, because occupancy 0.500 <= existing 0.500 in 2furA # 2furA read from all-align.a2m # adding 2furA to template set # found chain 2furA in template set Warning: unaligning (T0506)E178 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)E179 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)L252 because last residue in template chain is (2furA)I208 T0506 23 :PFEAVRVARDVLHTSRTAALATL 2furA 17 :ASYSDEDLVAMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIEPD 2furA 40 :DGGIPYAIPMMLASEGK T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGK 2furA 57 :TIYLHGSMKSRIYGILKTGQLIAISLLEING T0506 97 :GDALTLPRLTLVGRADRI 2furA 96 :NNSINYVSALIFGRPYEI T0506 115 :GPDEVPLAIARYIARYP 2furA 115 :DTEKKIEVFRLLTEKLV T0506 156 :GGPARNASNITPADLR 2furA 132 :KGRWDNSIKPSYEDLN T0506 172 :TDLSGA 2furA 157 :ETFSMK T0506 180 :LMAAAESEAT 2furA 165 :TGPPHDTSTD T0506 192 :NAIKGEASRLAVLAGA 2furA 175 :DIWSGVLPIQHTISEA T0506 235 :FAERVETLKQFEKALAQ 2furA 191 :GENAPEYVKSLYGKRIF Number of specific fragments extracted= 10 number of extra gaps= 1 total=8513 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1973359431.pdb -s /var/tmp/to_scwrl_1973359431.seq -o /var/tmp/from_scwrl_1973359431.pdb > /var/tmp/scwrl_1973359431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1973359431.pdb Number of alignments=1057 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)R190 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 23 :PFEAVRVARDVLHTSRTAALATL 2furA 17 :ASYSDEDLVAMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIEPD 2furA 40 :DGGIPYAIPMMLASEGK T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGK 2furA 57 :TIYLHGSMKSRIYGILKTGQLIAISLLEING T0506 97 :G 2furA 96 :N T0506 102 :LPRLTLVGRADRI 2furA 101 :YVSALIFGRPYEI T0506 115 :GPDEVPLAIARYIARYP 2furA 115 :DTEKKIEVFRLLTEKLV T0506 183 :AAESEAT 2furA 141 :PSYEDLN T0506 192 :NAIKGEA 2furA 175 :DIWSGVL T0506 235 :FAERVETLKQFEKALAQ 2furA 191 :GENAPEYVKSLYGKRIF Number of specific fragments extracted= 9 number of extra gaps= 1 total=8522 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_978957772.pdb -s /var/tmp/to_scwrl_978957772.seq -o /var/tmp/from_scwrl_978957772.pdb > /var/tmp/scwrl_978957772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_978957772.pdb Number of alignments=1058 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 30 :ARDVLHTSRTAALATL 2furA 24 :LVAMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIEPD 2furA 40 :DGGIPYAIPMMLASEGK T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGK 2furA 57 :TIYLHGSMKSRIYGILKTGQLIAISLLEING T0506 97 :GDALTLPRLTLVGRADRI 2furA 96 :NNSINYVSALIFGRPYEI T0506 115 :GPDEVPLAIARYIARY 2furA 115 :DTEKKIEVFRLLTEKL Number of specific fragments extracted= 5 number of extra gaps= 0 total=8527 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_151671283.pdb -s /var/tmp/to_scwrl_151671283.seq -o /var/tmp/from_scwrl_151671283.pdb > /var/tmp/scwrl_151671283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151671283.pdb Number of alignments=1059 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 30 :ARDVLHTSRTAALATL 2furA 24 :LVAMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIEPD 2furA 40 :DGGIPYAIPMMLASEGK T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGK 2furA 57 :TIYLHGSMKSRIYGILKTGQLIAISLLEING T0506 97 :G 2furA 96 :N T0506 102 :LPRLTLVGRADRI 2furA 101 :YVSALIFGRPYEI T0506 115 :GPDEVPLAIARYIARYPKA 2furA 115 :DTEKKIEVFRLLTEKLVKG T0506 134 :KLYLSLPDTRLYRLRTEGVQ 2furA 141 :PSYEDLNGVFVFAVKPETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=8534 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_155742470.pdb -s /var/tmp/to_scwrl_155742470.seq -o /var/tmp/from_scwrl_155742470.pdb > /var/tmp/scwrl_155742470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155742470.pdb Number of alignments=1060 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)A162 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)F235 because last residue in template chain is (2furA)I208 T0506 23 :PFEAVRVARDVLHTSRTAALATL 2furA 17 :ASYSDEDLVAMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIE 2furA 40 :DGGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEI T0506 98 :DALTLPR 2furA 86 :NGIVLAK T0506 105 :LTLVGRADRIGP 2furA 104 :ALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPKAKL 2furA 117 :EKKIEVFRLLTEKLVKGRW T0506 136 :YLSLPDTRLYRLRTEGVQINGGPAR 2furA 138 :SIKPSYEDLNGVFVFAVKPETFSMK T0506 163 :SNITPADLRT 2furA 165 :TGPPHDTSTD T0506 202 :AVLAGAKTGRWKITSIDPDGIDLASASDLARLW 2furA 175 :DIWSGVLPIQHTISEAGENAPEYVKSLYGKRIF Number of specific fragments extracted= 9 number of extra gaps= 1 total=8543 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_609280042.pdb -s /var/tmp/to_scwrl_609280042.seq -o /var/tmp/from_scwrl_609280042.pdb > /var/tmp/scwrl_609280042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609280042.pdb Number of alignments=1061 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)A162 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 23 :PFEAVRVARDVLHTSRTAALATL 2furA 17 :ASYSDEDLVAMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIEPD 2furA 40 :DGGIPYAIPMMLASEGK T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPF 2furA 57 :TIYLHGSMKSRIYGILKTGQLIAISLLEI T0506 98 :DALTLPR 2furA 86 :NGIVLAK T0506 105 :LTLVGRADRIGP 2furA 104 :ALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPKAKL 2furA 117 :EKKIEVFRLLTEKLVKGRW T0506 136 :YLSLPDTRLYRLRTEGVQINGGPAR 2furA 138 :SIKPSYEDLNGVFVFAVKPETFSMK T0506 163 :SN 2furA 165 :TG T0506 166 :TPADLRTD 2furA 167 :PPHDTSTD T0506 202 :AVLAGAKTGRWKITSIDPDGIDLA 2furA 175 :DIWSGVLPIQHTISEAGENAPEYV Number of specific fragments extracted= 10 number of extra gaps= 1 total=8553 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_125058368.pdb -s /var/tmp/to_scwrl_125058368.seq -o /var/tmp/from_scwrl_125058368.pdb > /var/tmp/scwrl_125058368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_125058368.pdb Number of alignments=1062 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 32 :DVLHTSRTAALATL 2furA 26 :AMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIEPD 2furA 40 :DGGIPYAIPMMLASEGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=8555 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_879013208.pdb -s /var/tmp/to_scwrl_879013208.seq -o /var/tmp/from_scwrl_879013208.pdb > /var/tmp/scwrl_879013208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_879013208.pdb Number of alignments=1063 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 31 :RDVLHTSRTAALATL 2furA 25 :VAMLDRNFTCTVSFI T0506 48 :VSGYPYTTATNIGIEPD 2furA 40 :DGGIPYAIPMMLASEGK T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2furA 58 :IYLHGSMKSRIYGILKTGQLIAISLL Number of specific fragments extracted= 3 number of extra gaps= 0 total=8558 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_821904168.pdb -s /var/tmp/to_scwrl_821904168.seq -o /var/tmp/from_scwrl_821904168.pdb > /var/tmp/scwrl_821904168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821904168.pdb Number of alignments=1064 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 119 :VPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQI 2furA 43 :IPYAIPMMLASEGKTIYLHGSMKSRIYGILKTGQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=8559 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_805884651.pdb -s /var/tmp/to_scwrl_805884651.seq -o /var/tmp/from_scwrl_805884651.pdb > /var/tmp/scwrl_805884651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805884651.pdb Number of alignments=1065 # 2furA read from all-align.a2m # found chain 2furA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=8559 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 16 :IE 2furA 17 :AS T0506 25 :EAVRVARDVLHTSRTAALATLD 2furA 19 :YSDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRTD 2furA 168 :PHDTSTDDIWSG T0506 174 :LSGAEELMAAAES 2furA 181 :LPIQHTISEAGEN T0506 245 :FEKALAQLLK 2furA 194 :APEYVKSLYG Number of specific fragments extracted= 12 number of extra gaps= 1 total=8571 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1615054232.pdb -s /var/tmp/to_scwrl_1615054232.seq -o /var/tmp/from_scwrl_1615054232.pdb > /var/tmp/scwrl_1615054232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615054232.pdb Number of alignments=1066 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)L201 because last residue in template chain is (2furA)I208 T0506 16 :IEP 2furA 17 :ASY T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPKAKLYLSL 2furA 117 :EKKIEVFRLLTEKLVKGRWDNSI T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPAD 2furA 168 :PHDTSTDD T0506 170 :LRTDLSGAEELMAAAESEATRLNAIKGEASR 2furA 177 :WSGVLPIQHTISEAGENAPEYVKSLYGKRIF Number of specific fragments extracted= 10 number of extra gaps= 1 total=8581 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1358186455.pdb -s /var/tmp/to_scwrl_1358186455.seq -o /var/tmp/from_scwrl_1358186455.pdb > /var/tmp/scwrl_1358186455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358186455.pdb Number of alignments=1067 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)L201 because last residue in template chain is (2furA)I208 T0506 16 :IE 2furA 17 :AS T0506 25 :EAVRVARDVLHTSRTAALATLD 2furA 19 :YSDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYL 2furA 135 :WDNSI T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLR 2furA 168 :PHDTSTDDIW T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASR 2furA 179 :GVLPIQHTISEAGENAPEYVKSLYGKRIF Number of specific fragments extracted= 11 number of extra gaps= 1 total=8592 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2079708455.pdb -s /var/tmp/to_scwrl_2079708455.seq -o /var/tmp/from_scwrl_2079708455.pdb > /var/tmp/scwrl_2079708455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079708455.pdb Number of alignments=1068 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)F235 because last residue in template chain is (2furA)I208 T0506 16 :IEP 2furA 17 :ASY T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRT 2furA 168 :PHDTSTDDIWS T0506 221 :GIDL 2furA 179 :GVLP T0506 230 :LARLW 2furA 203 :GKRIF Number of specific fragments extracted= 12 number of extra gaps= 1 total=8604 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_718048868.pdb -s /var/tmp/to_scwrl_718048868.seq -o /var/tmp/from_scwrl_718048868.pdb > /var/tmp/scwrl_718048868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_718048868.pdb Number of alignments=1069 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 16 :IE 2furA 17 :AS T0506 25 :EAVRVARDVLHTSRTAALATLD 2furA 19 :YSDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPA 2furA 168 :PHDTSTD T0506 223 :DLASASDLARLWFAERVETLKQFEKAL 2furA 175 :DIWSGVLPIQHTISEAGENAPEYVKSL T0506 253 :LK 2furA 202 :YG Number of specific fragments extracted= 12 number of extra gaps= 1 total=8616 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1137496814.pdb -s /var/tmp/to_scwrl_1137496814.seq -o /var/tmp/from_scwrl_1137496814.pdb > /var/tmp/scwrl_1137496814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1137496814.pdb Number of alignments=1070 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 16 :IEP 2furA 17 :ASY T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 95 :GKG 2furA 93 :EIK T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRT 2furA 168 :PHDTSTDDIWS T0506 227 :ASDLARLWFAERVETLKQ 2furA 179 :GVLPIQHTISEAGENAPE T0506 248 :ALAQLLK 2furA 197 :YVKSLYG Number of specific fragments extracted= 13 number of extra gaps= 1 total=8629 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_40112903.pdb -s /var/tmp/to_scwrl_40112903.seq -o /var/tmp/from_scwrl_40112903.pdb > /var/tmp/scwrl_40112903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_40112903.pdb Number of alignments=1071 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 16 :IEP 2furA 17 :ASY T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRT 2furA 168 :PHDTSTDDIWS T0506 227 :ASDLARLWFAERVETLKQFEKALAQ 2furA 179 :GVLPIQHTISEAGENAPEYVKSLYG Number of specific fragments extracted= 11 number of extra gaps= 1 total=8640 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1200084444.pdb -s /var/tmp/to_scwrl_1200084444.seq -o /var/tmp/from_scwrl_1200084444.pdb > /var/tmp/scwrl_1200084444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200084444.pdb Number of alignments=1072 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)L201 because last residue in template chain is (2furA)I208 T0506 16 :IE 2furA 17 :AS T0506 25 :EAVRVARDVLHTSRTAALATLD 2furA 19 :YSDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITP 2furA 168 :PHDTST T0506 168 :ADLRTDLSGAEELMAAAESEATRLNAIKGEASR 2furA 175 :DIWSGVLPIQHTISEAGENAPEYVKSLYGKRIF Number of specific fragments extracted= 11 number of extra gaps= 1 total=8651 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_362255734.pdb -s /var/tmp/to_scwrl_362255734.seq -o /var/tmp/from_scwrl_362255734.pdb > /var/tmp/scwrl_362255734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_362255734.pdb Number of alignments=1073 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 16 :IEP 2furA 17 :ASY T0506 23 :P 2furA 20 :S T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 94 :FGKG 2furA 92 :KEIK T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARY 2furA 117 :EKKIEVFRLLTEKL T0506 131 :PKAKLYLSL 2furA 133 :GRWDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRTD 2furA 168 :PHDTSTDDIWSG T0506 252 :LLK 2furA 201 :LYG Number of specific fragments extracted= 13 number of extra gaps= 1 total=8664 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_378415119.pdb -s /var/tmp/to_scwrl_378415119.seq -o /var/tmp/from_scwrl_378415119.pdb > /var/tmp/scwrl_378415119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_378415119.pdb Number of alignments=1074 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 16 :IEP 2furA 17 :ASY T0506 23 :PFEA 2furA 20 :SDED T0506 30 :ARDVLHTSRTAALATLD 2furA 24 :LVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 94 :FGKG 2furA 92 :KEIK T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARY 2furA 117 :EKKIEVFRLLTEKL T0506 131 :PK 2furA 132 :KG T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASN 2furA 168 :PHD T0506 227 :ASDLARLWFAER 2furA 179 :GVLPIQHTISEA T0506 239 :VETLKQFE 2furA 192 :ENAPEYVK Number of specific fragments extracted= 15 number of extra gaps= 1 total=8679 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_171306813.pdb -s /var/tmp/to_scwrl_171306813.seq -o /var/tmp/from_scwrl_171306813.pdb > /var/tmp/scwrl_171306813.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_171306813.pdb Number of alignments=1075 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 16 :IEP 2furA 17 :ASY T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 95 :GK 2furA 93 :EI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARY 2furA 117 :EKKIEVFRLLTEKL T0506 131 :P 2furA 133 :G T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRT 2furA 168 :PHDTSTDDIWS T0506 221 :GIDLAS 2furA 179 :GVLPIQ T0506 254 :K 2furA 203 :G Number of specific fragments extracted= 14 number of extra gaps= 1 total=8693 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1638515729.pdb -s /var/tmp/to_scwrl_1638515729.seq -o /var/tmp/from_scwrl_1638515729.pdb > /var/tmp/scwrl_1638515729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1638515729.pdb Number of alignments=1076 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)F235 because last residue in template chain is (2furA)I208 T0506 16 :IEP 2furA 17 :ASY T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRT 2furA 168 :PHDTSTDDIWS T0506 221 :GIDL 2furA 179 :GVLP T0506 230 :LARLW 2furA 203 :GKRIF Number of specific fragments extracted= 12 number of extra gaps= 1 total=8705 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1979730647.pdb -s /var/tmp/to_scwrl_1979730647.seq -o /var/tmp/from_scwrl_1979730647.pdb > /var/tmp/scwrl_1979730647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1979730647.pdb Number of alignments=1077 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 25 :EAVRVARDVLHTSRTAALATLD 2furA 19 :YSDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRTD 2furA 168 :PHDTSTDDIWSG T0506 174 :LSGAEELM 2furA 181 :LPIQHTIS Number of specific fragments extracted= 10 number of extra gaps= 1 total=8715 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_519871125.pdb -s /var/tmp/to_scwrl_519871125.seq -o /var/tmp/from_scwrl_519871125.pdb > /var/tmp/scwrl_519871125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519871125.pdb Number of alignments=1078 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 28 :RVARDVLHTSRTAALATLD 2furA 22 :EDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPKAKLYLSL 2furA 117 :EKKIEVFRLLTEKLVKGRWDNSI T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRT 2furA 168 :PHDTSTDDIWS Number of specific fragments extracted= 8 number of extra gaps= 1 total=8723 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1720475193.pdb -s /var/tmp/to_scwrl_1720475193.seq -o /var/tmp/from_scwrl_1720475193.pdb > /var/tmp/scwrl_1720475193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1720475193.pdb Number of alignments=1079 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYL 2furA 135 :WDNSI T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRTD 2furA 168 :PHDTSTDDIWSG T0506 174 :LSGAEELM 2furA 181 :LPIQHTIS Number of specific fragments extracted= 10 number of extra gaps= 1 total=8733 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1126495801.pdb -s /var/tmp/to_scwrl_1126495801.seq -o /var/tmp/from_scwrl_1126495801.pdb > /var/tmp/scwrl_1126495801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126495801.pdb Number of alignments=1080 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PA 2furA 165 :TG Number of specific fragments extracted= 8 number of extra gaps= 1 total=8741 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1572975477.pdb -s /var/tmp/to_scwrl_1572975477.seq -o /var/tmp/from_scwrl_1572975477.pdb > /var/tmp/scwrl_1572975477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1572975477.pdb Number of alignments=1081 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 T0506 26 :AVRVARDVLHTSRTAALATLD 2furA 20 :SDEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK Number of specific fragments extracted= 7 number of extra gaps= 1 total=8748 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2097917748.pdb -s /var/tmp/to_scwrl_2097917748.seq -o /var/tmp/from_scwrl_2097917748.pdb > /var/tmp/scwrl_2097917748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097917748.pdb Number of alignments=1082 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 95 :GKG 2furA 93 :EIK T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNIT 2furA 168 :PHDTS Number of specific fragments extracted= 10 number of extra gaps= 1 total=8758 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_384625195.pdb -s /var/tmp/to_scwrl_384625195.seq -o /var/tmp/from_scwrl_384625195.pdb > /var/tmp/scwrl_384625195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_384625195.pdb Number of alignments=1083 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADLRT 2furA 168 :PHDTSTDDIWS Number of specific fragments extracted= 9 number of extra gaps= 1 total=8767 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2064950188.pdb -s /var/tmp/to_scwrl_2064950188.seq -o /var/tmp/from_scwrl_2064950188.pdb > /var/tmp/scwrl_2064950188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064950188.pdb Number of alignments=1084 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITP 2furA 168 :PHDTST Number of specific fragments extracted= 9 number of extra gaps= 1 total=8776 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2124204207.pdb -s /var/tmp/to_scwrl_2124204207.seq -o /var/tmp/from_scwrl_2124204207.pdb > /var/tmp/scwrl_2124204207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124204207.pdb Number of alignments=1085 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 94 :FGKG 2furA 92 :KEIK T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARY 2furA 117 :EKKIEVFRLLTEKL T0506 131 :PKAKLYLSL 2furA 133 :GRWDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASN 2furA 168 :PHD Number of specific fragments extracted= 10 number of extra gaps= 1 total=8786 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_732044958.pdb -s /var/tmp/to_scwrl_732044958.seq -o /var/tmp/from_scwrl_732044958.pdb > /var/tmp/scwrl_732044958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_732044958.pdb Number of alignments=1086 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 23 :PF 2furA 20 :SD T0506 28 :RVARDVLHTSRTAALATLD 2furA 22 :EDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 94 :FGKG 2furA 92 :KEIK T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARY 2furA 117 :EKKIEVFRLLTEKL T0506 131 :PK 2furA 132 :KG T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :AS 2furA 168 :PH Number of specific fragments extracted= 12 number of extra gaps= 1 total=8798 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1659341971.pdb -s /var/tmp/to_scwrl_1659341971.seq -o /var/tmp/from_scwrl_1659341971.pdb > /var/tmp/scwrl_1659341971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659341971.pdb Number of alignments=1087 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 95 :GK 2furA 93 :EI T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARY 2furA 117 :EKKIEVFRLLTEKL T0506 131 :P 2furA 133 :G T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNITPADL 2furA 168 :PHDTSTDDI Number of specific fragments extracted= 11 number of extra gaps= 1 total=8809 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1950079991.pdb -s /var/tmp/to_scwrl_1950079991.seq -o /var/tmp/from_scwrl_1950079991.pdb > /var/tmp/scwrl_1950079991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1950079991.pdb Number of alignments=1088 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 27 :VRVARDVLHTSRTAALATLD 2furA 21 :DEDLVAMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISLLE T0506 98 :DALTLPRLTLVGRADRIGP 2furA 97 :NSINYVSALIFGRPYEIDD T0506 117 :DEVPLAIARYIARYPK 2furA 117 :EKKIEVFRLLTEKLVK T0506 133 :AKLYLSL 2furA 135 :WDNSIKP T0506 140 :PDTRLYRLRTEGVQIN 2furA 147 :NGVFVFAVKPETFSMK T0506 158 :PAR 2furA 165 :TGP T0506 162 :ASNIT 2furA 168 :PHDTS Number of specific fragments extracted= 9 number of extra gaps= 1 total=8818 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1711002729.pdb -s /var/tmp/to_scwrl_1711002729.seq -o /var/tmp/from_scwrl_1711002729.pdb > /var/tmp/scwrl_1711002729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1711002729.pdb Number of alignments=1089 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 21 :GAPFEAVRV 2furA 17 :ASYSDEDLV T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPK 2furA 119 :KIEVFRLLTEKLVK T0506 133 :AKLYLSLPDTRLYRLRTEGVQIN 2furA 140 :KPSYEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLRTDLSGAEELMAAAES 2furA 165 :TGPPHDTSTDDIWSGVLPIQHTISEAGEN T0506 242 :LKQFEKAL 2furA 194 :APEYVKSL T0506 250 :AQLLK 2furA 204 :KRIFI Number of specific fragments extracted= 10 number of extra gaps= 1 total=8828 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1811013255.pdb -s /var/tmp/to_scwrl_1811013255.seq -o /var/tmp/from_scwrl_1811013255.pdb > /var/tmp/scwrl_1811013255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1811013255.pdb Number of alignments=1090 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 Warning: unaligning (T0506)L201 because last residue in template chain is (2furA)I208 T0506 21 :GAPFEAVRVA 2furA 17 :ASYSDEDLVA T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKL 2furA 119 :KIEVFRLLTEKLVKGRW T0506 136 :YLSLPDTRLYRLRTEGVQIN 2furA 143 :YEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASR 2furA 165 :TGPPHDTSTDDIWSGVLPIQHTISEAGENAPEYVKSLYGKRIF Number of specific fragments extracted= 8 number of extra gaps= 1 total=8836 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2105822462.pdb -s /var/tmp/to_scwrl_2105822462.seq -o /var/tmp/from_scwrl_2105822462.pdb > /var/tmp/scwrl_2105822462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2105822462.pdb Number of alignments=1091 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 21 :GAPFEAVRV 2furA 17 :ASYSDEDLV T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 123 :IARYIARYPK 2furA 123 :FRLLTEKLVK T0506 133 :AKLYLSLPDTRLYRLRTEGVQIN 2furA 140 :KPSYEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLRTDLSGAEELMAAAESEATRLNA 2furA 165 :TGPPHDTSTDDIWSGVLPIQHTISEAGENAPEYVKS T0506 205 :AGAK 2furA 201 :LYGK T0506 253 :LK 2furA 207 :FI Number of specific fragments extracted= 10 number of extra gaps= 1 total=8846 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_172799124.pdb -s /var/tmp/to_scwrl_172799124.seq -o /var/tmp/from_scwrl_172799124.pdb > /var/tmp/scwrl_172799124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172799124.pdb Number of alignments=1092 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 22 :APFEAVRVA 2furA 17 :ASYSDEDLV T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 120 :PLAIARYIA 2furA 119 :KIEVFRLLT T0506 129 :RYPKAKL 2furA 129 :KLVKGRW T0506 136 :YLSLPDTRLYRLRTEGVQIN 2furA 143 :YEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLRTDL 2furA 165 :TGPPHDTSTDDIWSGVL T0506 230 :LARLWFAERVETLKQFEKAL 2furA 182 :PIQHTISEAGENAPEYVKSL T0506 252 :LLK 2furA 206 :IFI Number of specific fragments extracted= 11 number of extra gaps= 1 total=8857 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1936071623.pdb -s /var/tmp/to_scwrl_1936071623.seq -o /var/tmp/from_scwrl_1936071623.pdb > /var/tmp/scwrl_1936071623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1936071623.pdb Number of alignments=1093 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 21 :GAPFEAVRVA 2furA 17 :ASYSDEDLVA T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIEPD 2furA 41 :GGIPYAIPMMLASEGK T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 57 :TIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIA 2furA 97 :NSINYVSALIFGRPYEIDDTEKKIEVFRLLT T0506 129 :RYPK 2furA 130 :LVKG T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2furA 141 :PSYEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLRTDL 2furA 165 :TGPPHDTSTDDIWSGVL T0506 230 :LARLWFAERVETLKQFEK 2furA 182 :PIQHTISEAGENAPEYVK T0506 251 :QLL 2furA 200 :SLY Number of specific fragments extracted= 10 number of extra gaps= 1 total=8867 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_837352023.pdb -s /var/tmp/to_scwrl_837352023.seq -o /var/tmp/from_scwrl_837352023.pdb > /var/tmp/scwrl_837352023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_837352023.pdb Number of alignments=1094 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 21 :GAPFEAVRVA 2furA 17 :ASYSDEDLVA T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADL 2furA 165 :TGPPHDTSTDDIW T0506 229 :DLARLWFAERVETLKQFEKALAQLL 2furA 178 :SGVLPIQHTISEAGENAPEYVKSLY Number of specific fragments extracted= 9 number of extra gaps= 1 total=8876 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_994703293.pdb -s /var/tmp/to_scwrl_994703293.seq -o /var/tmp/from_scwrl_994703293.pdb > /var/tmp/scwrl_994703293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994703293.pdb Number of alignments=1095 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 21 :GAPFEAVRVA 2furA 17 :ASYSDEDLVA T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPK 2furA 119 :KIEVFRLLTEKLVK T0506 133 :AKLYLSLPDTRLYRLRTEGVQIN 2furA 140 :KPSYEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADL 2furA 165 :TGPPHDTSTDDIW T0506 226 :SASDLARLWFAERVETLKQFEKAL 2furA 178 :SGVLPIQHTISEAGENAPEYVKSL T0506 250 :AQLLK 2furA 204 :KRIFI Number of specific fragments extracted= 10 number of extra gaps= 1 total=8886 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_594472628.pdb -s /var/tmp/to_scwrl_594472628.seq -o /var/tmp/from_scwrl_594472628.pdb > /var/tmp/scwrl_594472628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_594472628.pdb Number of alignments=1096 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 20 :AGAPFEAVR 2furA 17 :ASYSDEDLV T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKL 2furA 119 :KIEVFRLLTEKLVKGRW T0506 136 :YLSLPDTRLYRLRTEGVQIN 2furA 143 :YEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLRTDLSGAEELMAAAESEA 2furA 165 :TGPPHDTSTDDIWSGVLPIQHTISEAGENAP T0506 244 :QFEKAL 2furA 196 :EYVKSL T0506 250 :AQLLK 2furA 204 :KRIFI Number of specific fragments extracted= 10 number of extra gaps= 1 total=8896 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_304922608.pdb -s /var/tmp/to_scwrl_304922608.seq -o /var/tmp/from_scwrl_304922608.pdb > /var/tmp/scwrl_304922608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_304922608.pdb Number of alignments=1097 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 20 :AGAPFEAVR 2furA 17 :ASYSDEDLV T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 96 :KG 2furA 92 :KE T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNASNI 2furA 165 :TGPPHDTS T0506 174 :LSGA 2furA 173 :TDDI T0506 229 :DLARLWFAERVETLKQF 2furA 182 :PIQHTISEAGENAPEYV T0506 250 :AQLLK 2furA 199 :KSLYG Number of specific fragments extracted= 12 number of extra gaps= 1 total=8908 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_205406101.pdb -s /var/tmp/to_scwrl_205406101.seq -o /var/tmp/from_scwrl_205406101.pdb > /var/tmp/scwrl_205406101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_205406101.pdb Number of alignments=1098 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 20 :AGAPFEAVR 2furA 17 :ASYSDEDLV T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISL T0506 92 :APFGKG 2furA 89 :VLAKEI T0506 98 :DALTLPRLTLVGRADRIGPD 2furA 97 :NSINYVSALIFGRPYEIDDT T0506 118 :EVPLAIARYIARY 2furA 118 :KKIEVFRLLTEKL T0506 131 :PKAKLYLS 2furA 133 :GRWDNSIK T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNAS 2furA 165 :TGPPHD T0506 172 :TDLSGAE 2furA 171 :TSTDDIW T0506 229 :DLARLWFAERVETLKQFEK 2furA 182 :PIQHTISEAGENAPEYVKS T0506 252 :LL 2furA 201 :LY Number of specific fragments extracted= 13 number of extra gaps= 1 total=8921 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_526697436.pdb -s /var/tmp/to_scwrl_526697436.seq -o /var/tmp/from_scwrl_526697436.pdb > /var/tmp/scwrl_526697436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_526697436.pdb Number of alignments=1099 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 21 :GAPFEAVRVA 2furA 17 :ASYSDEDLVA T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADL 2furA 165 :TGPPHDTSTDDIW T0506 229 :DLARLWFAERVETLKQFEKALAQLLK 2furA 178 :SGVLPIQHTISEAGENAPEYVKSLYG Number of specific fragments extracted= 9 number of extra gaps= 1 total=8930 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1022971476.pdb -s /var/tmp/to_scwrl_1022971476.seq -o /var/tmp/from_scwrl_1022971476.pdb > /var/tmp/scwrl_1022971476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1022971476.pdb Number of alignments=1100 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 21 :GAPFEAVRVA 2furA 17 :ASYSDEDLVA T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLR 2furA 165 :TGPPHDTSTDDIWS T0506 227 :ASDLARLWFAERVETLKQFEKAL 2furA 179 :GVLPIQHTISEAGENAPEYVKSL T0506 252 :LLK 2furA 206 :IFI Number of specific fragments extracted= 10 number of extra gaps= 1 total=8940 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1342902915.pdb -s /var/tmp/to_scwrl_1342902915.seq -o /var/tmp/from_scwrl_1342902915.pdb > /var/tmp/scwrl_1342902915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1342902915.pdb Number of alignments=1101 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 34 :LHTSRTAALATLD 2furA 28 :LDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKA 2furA 119 :KIEVFRLLTEKLVKG Number of specific fragments extracted= 5 number of extra gaps= 0 total=8945 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_566810339.pdb -s /var/tmp/to_scwrl_566810339.seq -o /var/tmp/from_scwrl_566810339.pdb > /var/tmp/scwrl_566810339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_566810339.pdb Number of alignments=1102 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 43 :ATLD 2furA 34 :CTVS T0506 47 :P 2furA 40 :D T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDEVPL 2furA 97 :NSINYVSALIFGRPYEIDDTEKKI Number of specific fragments extracted= 5 number of extra gaps= 0 total=8950 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_75572273.pdb -s /var/tmp/to_scwrl_75572273.seq -o /var/tmp/from_scwrl_75572273.pdb > /var/tmp/scwrl_75572273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75572273.pdb Number of alignments=1103 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 40 :A 2furA 34 :C T0506 44 :TLD 2furA 35 :TVS T0506 47 :P 2furA 40 :D T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 123 :IARYIARYPK 2furA 123 :FRLLTEKLVK T0506 133 :AKLYLSLPDTRLYRLRTEGVQIN 2furA 140 :KPSYEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPADLRTDLSG 2furA 165 :TGPPHDTSTDDIWSGVLPI Number of specific fragments extracted= 9 number of extra gaps= 1 total=8959 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1705158649.pdb -s /var/tmp/to_scwrl_1705158649.seq -o /var/tmp/from_scwrl_1705158649.pdb > /var/tmp/scwrl_1705158649.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1705158649.pdb Number of alignments=1104 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 120 :PLAIARYIA 2furA 119 :KIEVFRLLT T0506 129 :RYPKAKL 2furA 129 :KLVKGRW T0506 136 :YLSLPDTRLYRLRTEGVQIN 2furA 143 :YEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPAD 2furA 165 :TGPPHDTSTDDI Number of specific fragments extracted= 8 number of extra gaps= 1 total=8967 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_945225458.pdb -s /var/tmp/to_scwrl_945225458.seq -o /var/tmp/from_scwrl_945225458.pdb > /var/tmp/scwrl_945225458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_945225458.pdb Number of alignments=1105 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIEPD 2furA 41 :GGIPYAIPMMLASEGK T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 57 :TIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIA 2furA 97 :NSINYVSALIFGRPYEIDDTEKKIEVFRLLT T0506 129 :RYPK 2furA 130 :LVKG T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2furA 141 :PSYEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPAD 2furA 165 :TGPPHDTSTDDI Number of specific fragments extracted= 7 number of extra gaps= 1 total=8974 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_246879086.pdb -s /var/tmp/to_scwrl_246879086.seq -o /var/tmp/from_scwrl_246879086.pdb > /var/tmp/scwrl_246879086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246879086.pdb Number of alignments=1106 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNASNITPA 2furA 165 :TGPPHDTSTDD Number of specific fragments extracted= 7 number of extra gaps= 1 total=8981 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1196190731.pdb -s /var/tmp/to_scwrl_1196190731.seq -o /var/tmp/from_scwrl_1196190731.pdb > /var/tmp/scwrl_1196190731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196190731.pdb Number of alignments=1107 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPK 2furA 119 :KIEVFRLLTEKLVK T0506 133 :AKLYLSLPDTRLYRLRTEGVQIN 2furA 140 :KPSYEDLNGVFVFAVKPETFSMK T0506 158 :PARNASNITPAD 2furA 165 :TGPPHDTSTDDI Number of specific fragments extracted= 7 number of extra gaps= 1 total=8988 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_777472458.pdb -s /var/tmp/to_scwrl_777472458.seq -o /var/tmp/from_scwrl_777472458.pdb > /var/tmp/scwrl_777472458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_777472458.pdb Number of alignments=1108 # 2furA read from all-align.a2m # found chain 2furA in template set T0506 43 :ATLD 2furA 34 :CTVS T0506 47 :P 2furA 40 :D T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGI T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAI 2furA 119 :KIEVF Number of specific fragments extracted= 6 number of extra gaps= 0 total=8994 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_766750212.pdb -s /var/tmp/to_scwrl_766750212.seq -o /var/tmp/from_scwrl_766750212.pdb > /var/tmp/scwrl_766750212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_766750212.pdb Number of alignments=1109 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2furA)R16 Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 T0506 19 :SAGAPFEAVR 2furA 17 :ASYSDEDLVA T0506 33 :VLHTSRTAALATLD 2furA 27 :MLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 96 :KG 2furA 92 :KE T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK Number of specific fragments extracted= 8 number of extra gaps= 1 total=9002 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_769182279.pdb -s /var/tmp/to_scwrl_769182279.seq -o /var/tmp/from_scwrl_769182279.pdb > /var/tmp/scwrl_769182279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769182279.pdb Number of alignments=1110 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 20 :AGAPFEAV 2furA 18 :SYSDEDLV T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGIE 2furA 41 :GGIPYAIPMMLASE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2furA 55 :GKTIYLHGSMKSRIYGILKTGQLIAISL T0506 92 :APFGKG 2furA 89 :VLAKEI T0506 98 :DALTLPRLTLVGRADRIGPD 2furA 97 :NSINYVSALIFGRPYEIDDT T0506 118 :EVPLAIARYIARY 2furA 118 :KKIEVFRLLTEKL T0506 131 :PKAKLYLS 2furA 133 :GRWDNSIK T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNAS 2furA 165 :TGPPHD T0506 172 :TDLSGAE 2furA 171 :TSTDDIW T0506 229 :DLARLWFAERVETLKQ 2furA 182 :PIQHTISEAGENAPEY Number of specific fragments extracted= 12 number of extra gaps= 1 total=9014 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1903968259.pdb -s /var/tmp/to_scwrl_1903968259.seq -o /var/tmp/from_scwrl_1903968259.pdb > /var/tmp/scwrl_1903968259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903968259.pdb Number of alignments=1111 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNASNI 2furA 165 :TGPPHDTS Number of specific fragments extracted= 7 number of extra gaps= 1 total=9021 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_192242042.pdb -s /var/tmp/to_scwrl_192242042.seq -o /var/tmp/from_scwrl_192242042.pdb > /var/tmp/scwrl_192242042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_192242042.pdb Number of alignments=1112 # 2furA read from all-align.a2m # found chain 2furA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (2furA)R164 T0506 32 :DVLHTSRTAALATLD 2furA 26 :AMLDRNFTCTVSFID T0506 49 :SGYPYTTATNIGI 2furA 41 :GGIPYAIPMMLAS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2furA 54 :EGKTIYLHGSMKSRIYGILKTGQLIAISLLEIN T0506 98 :DALTLPRLTLVGRADRIGPDE 2furA 97 :NSINYVSALIFGRPYEIDDTE T0506 119 :VPLAIARYIARYPKAKLYLS 2furA 119 :KIEVFRLLTEKLVKGRWDNS T0506 139 :LPDTRLYRLRTEGVQIN 2furA 146 :LNGVFVFAVKPETFSMK T0506 158 :PARNASNITPA 2furA 165 :TGPPHDTSTDD Number of specific fragments extracted= 7 number of extra gaps= 1 total=9028 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_719616380.pdb -s /var/tmp/to_scwrl_719616380.seq -o /var/tmp/from_scwrl_719616380.pdb > /var/tmp/scwrl_719616380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719616380.pdb Number of alignments=1113 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)A250 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :G 2hhzA 70 :E T0506 99 :ALTLPRLTLVGRADRIGPDE 2hhzA 71 :GYLIQVVRVEGTARPVENDY T0506 122 :AIARYIARYPKAKLY 2hhzA 91 :LKTVFADNPYYQHIY T0506 212 :WKITSIDPDGIDLASASDLARLWFAE 2hhzA 113 :MQVFQIYAGHGFYHSLTQGHKYIFSI T0506 251 :QLLK 2hhzA 146 :VRAL Number of specific fragments extracted= 7 number of extra gaps= 1 total=9035 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_141109808.pdb -s /var/tmp/to_scwrl_141109808.seq -o /var/tmp/from_scwrl_141109808.pdb > /var/tmp/scwrl_141109808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141109808.pdb Number of alignments=1114 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)A250 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :G 2hhzA 70 :E T0506 99 :ALTLPRLTLVGRADRIGPDE 2hhzA 71 :GYLIQVVRVEGTARPVENDY T0506 122 :AIARYIARYPKAKLY 2hhzA 91 :LKTVFADNPYYQHIY T0506 212 :WKITSIDPDGIDLASASDLARLWFAE 2hhzA 113 :MQVFQIYAGHGFYHSLTQGHKYIFSI T0506 251 :QLLK 2hhzA 146 :VRAL Number of specific fragments extracted= 7 number of extra gaps= 1 total=9042 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_109708584.pdb -s /var/tmp/to_scwrl_109708584.seq -o /var/tmp/from_scwrl_109708584.pdb > /var/tmp/scwrl_109708584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_109708584.pdb Number of alignments=1115 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 T0506 30 :ARDVLHTSRTAALATLDP 2hhzA 6 :IMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :G 2hhzA 70 :E T0506 99 :ALTLPRLTLVGRADRIGPDE 2hhzA 71 :GYLIQVVRVEGTARPVENDY T0506 122 :AIARYIARYPKAKLY 2hhzA 91 :LKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGFYHSLT Number of specific fragments extracted= 6 number of extra gaps= 1 total=9048 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_696336941.pdb -s /var/tmp/to_scwrl_696336941.seq -o /var/tmp/from_scwrl_696336941.pdb > /var/tmp/scwrl_696336941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_696336941.pdb Number of alignments=1116 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 T0506 30 :ARDVLHTSRTAALATLDP 2hhzA 6 :IMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :G 2hhzA 70 :E T0506 99 :ALTLPRLTLVGRADRIGPDE 2hhzA 71 :GYLIQVVRVEGTARPVENDY T0506 122 :AIARYIARYPKAKLY 2hhzA 91 :LKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGFYHSLT Number of specific fragments extracted= 6 number of extra gaps= 1 total=9054 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_873154766.pdb -s /var/tmp/to_scwrl_873154766.seq -o /var/tmp/from_scwrl_873154766.pdb > /var/tmp/scwrl_873154766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_873154766.pdb Number of alignments=1117 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)P167 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)R171 because last residue in template chain is (2hhzA)L149 T0506 1 :MLDVAPPVITPRGT 2hhzA 1 :MELKDIMHILEDMK T0506 39 :TAALATLDP 2hhzA 15 :VGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMT T0506 94 :FG 2hhzA 66 :AI T0506 98 :DALTLPRLTLVGRADRIGPDEVP 2hhzA 70 :EGYLIQVVRVEGTARPVENDYLK T0506 125 :RYIARYPKAKLYL 2hhzA 93 :TVFADNPYYQHIY T0506 145 :YRLRTEGVQINGGPARNASNIT 2hhzA 113 :MQVFQIYAGHGFYHSLTQGHKY T0506 168 :ADL 2hhzA 146 :VRA Number of specific fragments extracted= 8 number of extra gaps= 1 total=9062 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1769050555.pdb -s /var/tmp/to_scwrl_1769050555.seq -o /var/tmp/from_scwrl_1769050555.pdb > /var/tmp/scwrl_1769050555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1769050555.pdb Number of alignments=1118 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)L144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 1 :MLDVAPPVITPR 2hhzA 1 :MELKDIMHILED T0506 37 :SRTAALATLDP 2hhzA 13 :MKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMT T0506 94 :FG 2hhzA 66 :AI T0506 98 :DALTLPRLTLVGRADRIGPDEVP 2hhzA 70 :EGYLIQVVRVEGTARPVENDYLK T0506 125 :RYIARYPKAKLYL 2hhzA 93 :TVFADNPYYQHIY T0506 145 :YRLRTEGVQINGGPARNA 2hhzA 113 :MQVFQIYAGHGFYHSLTQ Number of specific fragments extracted= 7 number of extra gaps= 1 total=9069 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_498933285.pdb -s /var/tmp/to_scwrl_498933285.seq -o /var/tmp/from_scwrl_498933285.pdb > /var/tmp/scwrl_498933285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498933285.pdb Number of alignments=1119 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 T0506 40 :AALATLDP 2hhzA 16 :GVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMT T0506 94 :FG 2hhzA 66 :AI T0506 98 :DALTLPRLTLVGRADRIGPDEVP 2hhzA 70 :EGYLIQVVRVEGTARPVENDYLK T0506 125 :RYIARYP 2hhzA 93 :TVFADNP Number of specific fragments extracted= 5 number of extra gaps= 1 total=9074 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_436673848.pdb -s /var/tmp/to_scwrl_436673848.seq -o /var/tmp/from_scwrl_436673848.pdb > /var/tmp/scwrl_436673848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_436673848.pdb Number of alignments=1120 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 T0506 37 :SRTAALATLDP 2hhzA 13 :MKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMT T0506 94 :FG 2hhzA 66 :AI T0506 98 :DALTLPRLTLVGRADRIGPDEVP 2hhzA 70 :EGYLIQVVRVEGTARPVENDYLK T0506 125 :RYIARYPKAK 2hhzA 93 :TVFADNPYYQ Number of specific fragments extracted= 5 number of extra gaps= 1 total=9079 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1432580163.pdb -s /var/tmp/to_scwrl_1432580163.seq -o /var/tmp/from_scwrl_1432580163.pdb > /var/tmp/scwrl_1432580163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1432580163.pdb Number of alignments=1121 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set T0506 33 :VLHTSRTAALATLDPV 2hhzA 9 :ILEDMKVGVFATLDEY T0506 50 :GYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2hhzA 25 :GNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMT Number of specific fragments extracted= 2 number of extra gaps= 0 total=9081 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_457272100.pdb -s /var/tmp/to_scwrl_457272100.seq -o /var/tmp/from_scwrl_457272100.pdb > /var/tmp/scwrl_457272100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457272100.pdb Number of alignments=1122 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set T0506 33 :VLHTSRTAALATLDPV 2hhzA 9 :ILEDMKVGVFATLDEY T0506 50 :GYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2hhzA 25 :GNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMT Number of specific fragments extracted= 2 number of extra gaps= 0 total=9083 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_609472973.pdb -s /var/tmp/to_scwrl_609472973.seq -o /var/tmp/from_scwrl_609472973.pdb > /var/tmp/scwrl_609472973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609472973.pdb Number of alignments=1123 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 23 :EYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 8 number of extra gaps= 1 total=9091 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1221168140.pdb -s /var/tmp/to_scwrl_1221168140.seq -o /var/tmp/from_scwrl_1221168140.pdb > /var/tmp/scwrl_1221168140.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1221168140.pdb Number of alignments=1124 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 23 :EYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 157 :GPARNASNI 2hhzA 130 :QGHKYIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 8 number of extra gaps= 1 total=9099 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1294624122.pdb -s /var/tmp/to_scwrl_1294624122.seq -o /var/tmp/from_scwrl_1294624122.pdb > /var/tmp/scwrl_1294624122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1294624122.pdb Number of alignments=1125 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 10 number of extra gaps= 1 total=9109 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1604176265.pdb -s /var/tmp/to_scwrl_1604176265.seq -o /var/tmp/from_scwrl_1604176265.pdb > /var/tmp/scwrl_1604176265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1604176265.pdb Number of alignments=1126 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDGT 2hhzA 37 :ANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 158 :PAR 2hhzA 130 :QGH T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 11 number of extra gaps= 1 total=9120 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1815640768.pdb -s /var/tmp/to_scwrl_1815640768.seq -o /var/tmp/from_scwrl_1815640768.pdb > /var/tmp/scwrl_1815640768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1815640768.pdb Number of alignments=1127 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDGT 2hhzA 37 :ANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 157 :GPAR 2hhzA 129 :TQGH T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 11 number of extra gaps= 1 total=9131 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1599546730.pdb -s /var/tmp/to_scwrl_1599546730.seq -o /var/tmp/from_scwrl_1599546730.pdb > /var/tmp/scwrl_1599546730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1599546730.pdb Number of alignments=1128 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 10 number of extra gaps= 1 total=9141 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1809582366.pdb -s /var/tmp/to_scwrl_1809582366.seq -o /var/tmp/from_scwrl_1809582366.pdb > /var/tmp/scwrl_1809582366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1809582366.pdb Number of alignments=1129 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 157 :G 2hhzA 131 :G T0506 159 :ARNASNI 2hhzA 132 :HKYIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 11 number of extra gaps= 1 total=9152 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_194854557.pdb -s /var/tmp/to_scwrl_194854557.seq -o /var/tmp/from_scwrl_194854557.pdb > /var/tmp/scwrl_194854557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194854557.pdb Number of alignments=1130 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 157 :GPAR 2hhzA 129 :TQGH T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 11 number of extra gaps= 1 total=9163 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_475034559.pdb -s /var/tmp/to_scwrl_475034559.seq -o /var/tmp/from_scwrl_475034559.pdb > /var/tmp/scwrl_475034559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475034559.pdb Number of alignments=1131 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDG 2hhzA 37 :ANEEG T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2hhzA 42 :IFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGPD 2hhzA 77 :VRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 11 number of extra gaps= 1 total=9174 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1005001635.pdb -s /var/tmp/to_scwrl_1005001635.seq -o /var/tmp/from_scwrl_1005001635.pdb > /var/tmp/scwrl_1005001635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005001635.pdb Number of alignments=1132 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)A236 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 T0506 3 :D 2hhzA 2 :E T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTAT 2hhzA 23 :EYGNPHARHA T0506 58 :NIGIEPD 2hhzA 34 :ITAANEE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2hhzA 41 :GIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGP 2hhzA 77 :VRVEGTARPVEN T0506 121 :LAIARYIARYPKAKLYL 2hhzA 89 :DYLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 229 :DLARLWF 2hhzA 132 :HKYIFSI Number of specific fragments extracted= 11 number of extra gaps= 1 total=9185 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_761664896.pdb -s /var/tmp/to_scwrl_761664896.seq -o /var/tmp/from_scwrl_761664896.pdb > /var/tmp/scwrl_761664896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_761664896.pdb Number of alignments=1133 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)T166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)T172 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)G176 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDG 2hhzA 37 :ANEEG T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2hhzA 42 :IFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGP 2hhzA 77 :VRVEGTARPVEN T0506 121 :LAIARYIARYPKAKLYL 2hhzA 89 :DYLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 157 :GPAR 2hhzA 129 :TQGH T0506 161 :NASNI 2hhzA 134 :YIFSI T0506 173 :DLS 2hhzA 146 :VRA Number of specific fragments extracted= 12 number of extra gaps= 1 total=9197 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_550606833.pdb -s /var/tmp/to_scwrl_550606833.seq -o /var/tmp/from_scwrl_550606833.pdb > /var/tmp/scwrl_550606833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_550606833.pdb Number of alignments=1134 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)L230 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)W234 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 211 :RWKITS 2hhzA 132 :HKYIFS T0506 231 :ARL 2hhzA 146 :VRA Number of specific fragments extracted= 10 number of extra gaps= 1 total=9207 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_562676637.pdb -s /var/tmp/to_scwrl_562676637.seq -o /var/tmp/from_scwrl_562676637.pdb > /var/tmp/scwrl_562676637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_562676637.pdb Number of alignments=1135 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)A168 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 23 :EYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPARNASNITP 2hhzA 113 :MQVFQIYAGHGFYHSLTQGHKYIFSI Number of specific fragments extracted= 6 number of extra gaps= 1 total=9213 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1706890353.pdb -s /var/tmp/to_scwrl_1706890353.seq -o /var/tmp/from_scwrl_1706890353.pdb > /var/tmp/scwrl_1706890353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706890353.pdb Number of alignments=1136 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 26 :AVRVARDVLHTSRTAALATLD 2hhzA 2 :ELKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 23 :EYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQI 2hhzA 113 :MQVFQIYAGHGFY Number of specific fragments extracted= 6 number of extra gaps= 1 total=9219 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_797485919.pdb -s /var/tmp/to_scwrl_797485919.seq -o /var/tmp/from_scwrl_797485919.pdb > /var/tmp/scwrl_797485919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797485919.pdb Number of alignments=1137 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG Number of specific fragments extracted= 8 number of extra gaps= 1 total=9227 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1758867369.pdb -s /var/tmp/to_scwrl_1758867369.seq -o /var/tmp/from_scwrl_1758867369.pdb > /var/tmp/scwrl_1758867369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1758867369.pdb Number of alignments=1138 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDGT 2hhzA 37 :ANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS Number of specific fragments extracted= 8 number of extra gaps= 1 total=9235 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_336879164.pdb -s /var/tmp/to_scwrl_336879164.seq -o /var/tmp/from_scwrl_336879164.pdb > /var/tmp/scwrl_336879164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336879164.pdb Number of alignments=1139 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDGT 2hhzA 37 :ANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQ 2hhzA 113 :MQVFQIYAGHGF Number of specific fragments extracted= 8 number of extra gaps= 1 total=9243 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1564236130.pdb -s /var/tmp/to_scwrl_1564236130.seq -o /var/tmp/from_scwrl_1564236130.pdb > /var/tmp/scwrl_1564236130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1564236130.pdb Number of alignments=1140 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG Number of specific fragments extracted= 8 number of extra gaps= 1 total=9251 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_380566001.pdb -s /var/tmp/to_scwrl_380566001.seq -o /var/tmp/from_scwrl_380566001.pdb > /var/tmp/scwrl_380566001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_380566001.pdb Number of alignments=1141 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS Number of specific fragments extracted= 8 number of extra gaps= 1 total=9259 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_93363777.pdb -s /var/tmp/to_scwrl_93363777.seq -o /var/tmp/from_scwrl_93363777.pdb > /var/tmp/scwrl_93363777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93363777.pdb Number of alignments=1142 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQIN 2hhzA 113 :MQVFQIYAGHGFYH Number of specific fragments extracted= 8 number of extra gaps= 1 total=9267 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1756478173.pdb -s /var/tmp/to_scwrl_1756478173.seq -o /var/tmp/from_scwrl_1756478173.pdb > /var/tmp/scwrl_1756478173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1756478173.pdb Number of alignments=1143 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDG 2hhzA 37 :ANEEG T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2hhzA 42 :IFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGPD 2hhzA 77 :VRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG Number of specific fragments extracted= 9 number of extra gaps= 1 total=9276 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1100182380.pdb -s /var/tmp/to_scwrl_1100182380.seq -o /var/tmp/from_scwrl_1100182380.pdb > /var/tmp/scwrl_1100182380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100182380.pdb Number of alignments=1144 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)A236 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTAT 2hhzA 23 :EYGNPHARHA T0506 58 :NIGIEPD 2hhzA 34 :ITAANEE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2hhzA 41 :GIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGP 2hhzA 77 :VRVEGTARPVEN T0506 121 :LAIARYIARYPKAKLYL 2hhzA 89 :DYLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGPAR 2hhzA 113 :MQVFQIYAGHGFYHSLTQG T0506 229 :DLARLWF 2hhzA 132 :HKYIFSI Number of specific fragments extracted= 10 number of extra gaps= 1 total=9286 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_234473585.pdb -s /var/tmp/to_scwrl_234473585.seq -o /var/tmp/from_scwrl_234473585.pdb > /var/tmp/scwrl_234473585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_234473585.pdb Number of alignments=1145 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IEPDG 2hhzA 37 :ANEEG T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2hhzA 42 :IFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 102 :LPR 2hhzA 73 :LIQ T0506 105 :LTLVGRADRIGP 2hhzA 77 :VRVEGTARPVEN T0506 121 :LAIARYIARYPKAKLYL 2hhzA 89 :DYLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGFYHSLT Number of specific fragments extracted= 9 number of extra gaps= 1 total=9295 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1866186757.pdb -s /var/tmp/to_scwrl_1866186757.seq -o /var/tmp/from_scwrl_1866186757.pdb > /var/tmp/scwrl_1866186757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1866186757.pdb Number of alignments=1146 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLD 2hhzA 3 :LKDIMHILEDMKVGVFATLD T0506 48 :VSGYPYTTATNIG 2hhzA 23 :EYGNPHARHAHIT T0506 61 :IE 2hhzA 37 :AN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 39 :EEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GKG 2hhzA 70 :EGY T0506 101 :TLPRLTLVGRADRIGPD 2hhzA 73 :LIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGFYHSLT Number of specific fragments extracted= 8 number of extra gaps= 1 total=9303 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1796519321.pdb -s /var/tmp/to_scwrl_1796519321.seq -o /var/tmp/from_scwrl_1796519321.pdb > /var/tmp/scwrl_1796519321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1796519321.pdb Number of alignments=1147 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)R146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)A248 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVPLA 2hhzA 72 :YLIQVVRVEGTARPVENDYLKTV T0506 127 :IARYPKAKLYL 2hhzA 95 :FADNPYYQHIY T0506 147 :LRTEGVQ 2hhzA 113 :MQVFQIY T0506 156 :GGPARNAS 2hhzA 120 :AGHGFYHS T0506 227 :ASDLARLWFAE 2hhzA 128 :LTQGHKYIFSI T0506 245 :FEK 2hhzA 146 :VRA Number of specific fragments extracted= 9 number of extra gaps= 1 total=9312 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1107628350.pdb -s /var/tmp/to_scwrl_1107628350.seq -o /var/tmp/from_scwrl_1107628350.pdb > /var/tmp/scwrl_1107628350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1107628350.pdb Number of alignments=1148 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)R146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)D173 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)E179 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)A183 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 126 :YIARYPKAKLYLS 2hhzA 90 :YLKTVFADNPYYQ T0506 139 :L 2hhzA 105 :Y T0506 147 :LRTEGVQINGGPARNASNITPADLRT 2hhzA 113 :MQVFQIYAGHGFYHSLTQGHKYIFSI T0506 180 :LMA 2hhzA 146 :VRA Number of specific fragments extracted= 8 number of extra gaps= 1 total=9320 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1487753665.pdb -s /var/tmp/to_scwrl_1487753665.seq -o /var/tmp/from_scwrl_1487753665.pdb > /var/tmp/scwrl_1487753665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1487753665.pdb Number of alignments=1149 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)A193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)S199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)A248 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVP 2hhzA 72 :YLIQVVRVEGTARPVENDYLK T0506 125 :RYIAR 2hhzA 93 :TVFAD T0506 185 :ESEATRLN 2hhzA 98 :NPYYQHIY T0506 200 :RLAVLAGAKTGRWK 2hhzA 113 :MQVFQIYAGHGFYH T0506 226 :SASDLARLWFAE 2hhzA 127 :SLTQGHKYIFSI T0506 245 :FEK 2hhzA 146 :VRA Number of specific fragments extracted= 9 number of extra gaps= 1 total=9329 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_147968960.pdb -s /var/tmp/to_scwrl_147968960.seq -o /var/tmp/from_scwrl_147968960.pdb > /var/tmp/scwrl_147968960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_147968960.pdb Number of alignments=1150 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)R146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)A248 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNI 2hhzA 24 :YGNPHARHAHI T0506 60 :GIEPDGT 2hhzA 36 :AANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 147 :LRTE 2hhzA 113 :MQVF T0506 153 :QINGGPARNASN 2hhzA 117 :QIYAGHGFYHSL T0506 228 :SDLARLWFAE 2hhzA 129 :TQGHKYIFSI T0506 245 :FEK 2hhzA 146 :VRA Number of specific fragments extracted= 11 number of extra gaps= 1 total=9340 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1544302198.pdb -s /var/tmp/to_scwrl_1544302198.seq -o /var/tmp/from_scwrl_1544302198.pdb > /var/tmp/scwrl_1544302198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1544302198.pdb Number of alignments=1151 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)R143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNI 2hhzA 24 :YGNPHARHAHI T0506 60 :GIEPDGT 2hhzA 36 :AANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 144 :LYRLRTE 2hhzA 113 :MQVFQIY T0506 156 :GGPARNASNIT 2hhzA 120 :AGHGFYHSLTQ T0506 210 :GRWKIT 2hhzA 131 :GHKYIF T0506 236 :AE 2hhzA 137 :SI T0506 245 :FEK 2hhzA 146 :VRA Number of specific fragments extracted= 12 number of extra gaps= 1 total=9352 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_772850183.pdb -s /var/tmp/to_scwrl_772850183.seq -o /var/tmp/from_scwrl_772850183.pdb > /var/tmp/scwrl_772850183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772850183.pdb Number of alignments=1152 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 147 :LRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGF T0506 161 :NAS 2hhzA 125 :YHS T0506 227 :ASDLARLWFAE 2hhzA 128 :LTQGHKYIFSI T0506 245 :FEK 2hhzA 146 :VRA Number of specific fragments extracted= 9 number of extra gaps= 1 total=9361 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_605241060.pdb -s /var/tmp/to_scwrl_605241060.seq -o /var/tmp/from_scwrl_605241060.pdb > /var/tmp/scwrl_605241060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_605241060.pdb Number of alignments=1153 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)R146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)A248 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 147 :LRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGF T0506 161 :NASN 2hhzA 125 :YHSL T0506 228 :SDLARLWFAE 2hhzA 129 :TQGHKYIFSI T0506 245 :FEK 2hhzA 146 :VRA Number of specific fragments extracted= 9 number of extra gaps= 1 total=9370 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_6291524.pdb -s /var/tmp/to_scwrl_6291524.seq -o /var/tmp/from_scwrl_6291524.pdb > /var/tmp/scwrl_6291524.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6291524.pdb Number of alignments=1154 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)A193 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)S199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)A248 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAI 2hhzA 72 :YLIQVVRVEGTARPVENDYLKTVF T0506 166 :TP 2hhzA 96 :AD T0506 185 :ESEATRLN 2hhzA 98 :NPYYQHIY T0506 200 :RLAVLAGAKTGRW 2hhzA 113 :MQVFQIYAGHGFY T0506 225 :ASASDLARLWFAE 2hhzA 126 :HSLTQGHKYIFSI T0506 245 :FEK 2hhzA 146 :VRA Number of specific fragments extracted= 9 number of extra gaps= 1 total=9379 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1994018323.pdb -s /var/tmp/to_scwrl_1994018323.seq -o /var/tmp/from_scwrl_1994018323.pdb > /var/tmp/scwrl_1994018323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994018323.pdb Number of alignments=1155 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)R238 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)Q244 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDE 2hhzA 72 :YLIQVVRVEGTARPVENDY T0506 123 :IARYIARYPKAKLYL 2hhzA 91 :LKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 227 :ASDLARLWFAE 2hhzA 128 :LTQGHKYIFSI T0506 245 :FE 2hhzA 146 :VR T0506 253 :LK 2hhzA 148 :AL Number of specific fragments extracted= 9 number of extra gaps= 1 total=9388 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1899865183.pdb -s /var/tmp/to_scwrl_1899865183.seq -o /var/tmp/from_scwrl_1899865183.pdb > /var/tmp/scwrl_1899865183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899865183.pdb Number of alignments=1156 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)I165 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)D229 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)L233 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAI 2hhzA 72 :YLIQVVRVEGTARPVENDYLKTVF T0506 128 :ARYPKAKLYL 2hhzA 96 :ADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 157 :GPARNASN 2hhzA 131 :GHKYIFSI T0506 230 :LAR 2hhzA 146 :VRA Number of specific fragments extracted= 8 number of extra gaps= 1 total=9396 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1610467789.pdb -s /var/tmp/to_scwrl_1610467789.seq -o /var/tmp/from_scwrl_1610467789.pdb > /var/tmp/scwrl_1610467789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1610467789.pdb Number of alignments=1157 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)I165 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)R171 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)S175 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS T0506 157 :GPARNASN 2hhzA 131 :GHKYIFSI T0506 172 :TDL 2hhzA 146 :VRA Number of specific fragments extracted= 8 number of extra gaps= 1 total=9404 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1662175444.pdb -s /var/tmp/to_scwrl_1662175444.seq -o /var/tmp/from_scwrl_1662175444.pdb > /var/tmp/scwrl_1662175444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1662175444.pdb Number of alignments=1158 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2hhzA)M1 Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 Warning: unaligning (T0506)D218 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)E145 Warning: unaligning (T0506)L233 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)E145 Warning: unaligning (T0506)E237 because last residue in template chain is (2hhzA)L149 T0506 26 :AVRVARDVLHTSRTAALATLDP 2hhzA 2 :ELKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQIN 2hhzA 113 :MQVFQIYAGHGFYH T0506 163 :SNI 2hhzA 127 :SLT T0506 209 :TGRWKITSI 2hhzA 130 :QGHKYIFSI T0506 234 :WFA 2hhzA 146 :VRA Number of specific fragments extracted= 9 number of extra gaps= 1 total=9413 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1351928266.pdb -s /var/tmp/to_scwrl_1351928266.seq -o /var/tmp/from_scwrl_1351928266.pdb > /var/tmp/scwrl_1351928266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351928266.pdb Number of alignments=1159 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 T0506 31 :RDVLHTSRTAALATLDP 2hhzA 7 :MHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAI 2hhzA 72 :YLIQVVRVEGTARPVENDYLKTVF Number of specific fragments extracted= 4 number of extra gaps= 1 total=9417 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1272566508.pdb -s /var/tmp/to_scwrl_1272566508.seq -o /var/tmp/from_scwrl_1272566508.pdb > /var/tmp/scwrl_1272566508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272566508.pdb Number of alignments=1160 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 T0506 32 :DVLHTSRTAALATLDP 2hhzA 8 :HILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND Number of specific fragments extracted= 4 number of extra gaps= 1 total=9421 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1857030001.pdb -s /var/tmp/to_scwrl_1857030001.seq -o /var/tmp/from_scwrl_1857030001.pdb > /var/tmp/scwrl_1857030001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857030001.pdb Number of alignments=1161 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 T0506 32 :DVLHTSRTAALATLDP 2hhzA 8 :HILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVP 2hhzA 72 :YLIQVVRVEGTARPVENDYLK T0506 125 :RYIA 2hhzA 93 :TVFA Number of specific fragments extracted= 5 number of extra gaps= 1 total=9426 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1826962826.pdb -s /var/tmp/to_scwrl_1826962826.seq -o /var/tmp/from_scwrl_1826962826.pdb > /var/tmp/scwrl_1826962826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826962826.pdb Number of alignments=1162 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 T0506 29 :VARDVLHTSRTAALATLDP 2hhzA 5 :DIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNI 2hhzA 24 :YGNPHARHAHI T0506 60 :GIEPDGT 2hhzA 36 :AANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVP 2hhzA 72 :YLIQVVRVEGTARPVENDYLK Number of specific fragments extracted= 6 number of extra gaps= 1 total=9432 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_130084496.pdb -s /var/tmp/to_scwrl_130084496.seq -o /var/tmp/from_scwrl_130084496.pdb > /var/tmp/scwrl_130084496.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_130084496.pdb Number of alignments=1163 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 T0506 29 :VARDVLHTSRTAALATLDP 2hhzA 5 :DIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNI 2hhzA 24 :YGNPHARHAHI T0506 60 :GIEPDGT 2hhzA 36 :AANEEGI T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2hhzA 43 :FFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY Number of specific fragments extracted= 7 number of extra gaps= 1 total=9439 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_471211250.pdb -s /var/tmp/to_scwrl_471211250.seq -o /var/tmp/from_scwrl_471211250.pdb > /var/tmp/scwrl_471211250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_471211250.pdb Number of alignments=1164 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 28 :RVARDVLHTSRTAALATLDP 2hhzA 4 :KDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 147 :LRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGF Number of specific fragments extracted= 6 number of extra gaps= 1 total=9445 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_230086012.pdb -s /var/tmp/to_scwrl_230086012.seq -o /var/tmp/from_scwrl_230086012.pdb > /var/tmp/scwrl_230086012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_230086012.pdb Number of alignments=1165 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)R146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 29 :VARDVLHTSRTAALATLDP 2hhzA 5 :DIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 147 :LRTEGVQINGGP 2hhzA 113 :MQVFQIYAGHGF Number of specific fragments extracted= 6 number of extra gaps= 1 total=9451 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_692761134.pdb -s /var/tmp/to_scwrl_692761134.seq -o /var/tmp/from_scwrl_692761134.pdb > /var/tmp/scwrl_692761134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692761134.pdb Number of alignments=1166 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 T0506 31 :RDVLHTSRTAALATLDP 2hhzA 7 :MHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEV 2hhzA 72 :YLIQVVRVEGTARPVENDYL Number of specific fragments extracted= 4 number of extra gaps= 1 total=9455 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_30617956.pdb -s /var/tmp/to_scwrl_30617956.seq -o /var/tmp/from_scwrl_30617956.pdb > /var/tmp/scwrl_30617956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30617956.pdb Number of alignments=1167 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 28 :RVARDVLHTSRTAALATLDP 2hhzA 4 :KDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDE 2hhzA 72 :YLIQVVRVEGTARPVENDY T0506 123 :IARYIARYPKAKLYL 2hhzA 91 :LKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQIN 2hhzA 113 :MQVFQIYAGHGFYH Number of specific fragments extracted= 6 number of extra gaps= 1 total=9461 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1027571931.pdb -s /var/tmp/to_scwrl_1027571931.seq -o /var/tmp/from_scwrl_1027571931.pdb > /var/tmp/scwrl_1027571931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1027571931.pdb Number of alignments=1168 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 27 :VRVARDVLHTSRTAALATLDP 2hhzA 3 :LKDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAI 2hhzA 72 :YLIQVVRVEGTARPVENDYLKTVF T0506 128 :ARYPKAKLYL 2hhzA 96 :ADNPYYQHIY T0506 142 :TRLYRLRTEGVQING 2hhzA 113 :MQVFQIYAGHGFYHS Number of specific fragments extracted= 6 number of extra gaps= 1 total=9467 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_304144856.pdb -s /var/tmp/to_scwrl_304144856.seq -o /var/tmp/from_scwrl_304144856.pdb > /var/tmp/scwrl_304144856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_304144856.pdb Number of alignments=1169 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 28 :RVARDVLHTSRTAALATLDP 2hhzA 4 :KDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :TRLYRLRTEGVQI 2hhzA 113 :MQVFQIYAGHGFY Number of specific fragments extracted= 6 number of extra gaps= 1 total=9473 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_367497120.pdb -s /var/tmp/to_scwrl_367497120.seq -o /var/tmp/from_scwrl_367497120.pdb > /var/tmp/scwrl_367497120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367497120.pdb Number of alignments=1170 # 2hhzA read from all-align.a2m # found chain 2hhzA in template set Warning: unaligning (T0506)P93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hhzA)E69 Warning: unaligning (T0506)F94 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hhzA)E69 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hhzA)T112 Warning: unaligning (T0506)D141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hhzA)T112 T0506 28 :RVARDVLHTSRTAALATLDP 2hhzA 4 :KDIMHILEDMKVGVFATLDE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2hhzA 24 :YGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAI T0506 95 :GK 2hhzA 70 :EG T0506 100 :LTLPRLTLVGRADRIGPD 2hhzA 72 :YLIQVVRVEGTARPVEND T0506 122 :AIARYIARYPKAKLYL 2hhzA 90 :YLKTVFADNPYYQHIY T0506 142 :T 2hhzA 113 :M T0506 148 :RTEGVQINGGP 2hhzA 114 :QVFQIYAGHGF Number of specific fragments extracted= 7 number of extra gaps= 1 total=9480 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_444324415.pdb -s /var/tmp/to_scwrl_444324415.seq -o /var/tmp/from_scwrl_444324415.pdb > /var/tmp/scwrl_444324415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_444324415.pdb Number of alignments=1171 2hq7A expands to /projects/compbio/data/pdb/2hq7.pdb.gz 2hq7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 971, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 973, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 975, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 977, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 979, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 981, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 983, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 985, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 2hq7A Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 2hq7A # 2hq7A read from all-align.a2m # adding 2hq7A to template set # found chain 2hq7A in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEPDGTPF 2hq7A 28 :NGYPNIKAMMRLKHDGLKKF T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 49 :LSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 122 :AIARYIARYPKAKLY 2hq7A 94 :SKEMLWTDGCEIYYP T0506 205 :AGAKTGRWKITSIDPDGIDLASASDLA 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHLKNI T0506 252 :LLK 2hq7A 136 :TFK Number of specific fragments extracted= 7 number of extra gaps= 0 total=9487 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_684710857.pdb -s /var/tmp/to_scwrl_684710857.seq -o /var/tmp/from_scwrl_684710857.pdb > /var/tmp/scwrl_684710857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_684710857.pdb Number of alignments=1172 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 25 :EAVRVARDVLHTSRTAALATLDP 2hq7A 5 :KFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEPDGTPF 2hq7A 28 :NGYPNIKAMMRLKHDGLKKF T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 49 :LSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 120 :PLAIARYIARYPK 2hq7A 96 :EMLWTDGCEIYYP T0506 205 :AGAKTGRWKITSIDPDGIDLASASDLA 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHLKNI Number of specific fragments extracted= 6 number of extra gaps= 0 total=9493 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_460860897.pdb -s /var/tmp/to_scwrl_460860897.seq -o /var/tmp/from_scwrl_460860897.pdb > /var/tmp/scwrl_460860897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460860897.pdb Number of alignments=1173 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 31 :RDVLHTSRTAALATLDP 2hq7A 11 :NELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEPDGTPF 2hq7A 28 :NGYPNIKAMMRLKHDGLKKF T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 49 :LSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 122 :AIARYIARYPKAK 2hq7A 94 :SKEMLWTDGCEIY T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL Number of specific fragments extracted= 6 number of extra gaps= 0 total=9499 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_53318941.pdb -s /var/tmp/to_scwrl_53318941.seq -o /var/tmp/from_scwrl_53318941.pdb > /var/tmp/scwrl_53318941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53318941.pdb Number of alignments=1174 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 31 :RDVLHTSRTAALATLDP 2hq7A 11 :NELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEPDGTPF 2hq7A 28 :NGYPNIKAMMRLKHDGLKKF T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 49 :LSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 122 :AIARYIARYPKA 2hq7A 94 :SKEMLWTDGCEI T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPA 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHLK Number of specific fragments extracted= 6 number of extra gaps= 0 total=9505 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1784893237.pdb -s /var/tmp/to_scwrl_1784893237.seq -o /var/tmp/from_scwrl_1784893237.pdb > /var/tmp/scwrl_1784893237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1784893237.pdb Number of alignments=1175 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)A168 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTAT 2hq7A 27 :ENGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEV 2hq7A 77 :FAGLMLVGTIEILHDRAS T0506 123 :IARYIARYPKAKL 2hq7A 95 :KEMLWTDGCEIYY T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNITP 2hq7A 110 :GIDDPDYTALCFTAEWGNYYRHLKNITFKIDE Number of specific fragments extracted= 6 number of extra gaps= 0 total=9511 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_695334482.pdb -s /var/tmp/to_scwrl_695334482.seq -o /var/tmp/from_scwrl_695334482.pdb > /var/tmp/scwrl_695334482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_695334482.pdb Number of alignments=1176 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A168 because last residue in template chain is (2hq7A)I142 T0506 1 :M 2hq7A 2 :I T0506 25 :EAVRVARDVLHTSRTAALATLD 2hq7A 5 :KFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTAT 2hq7A 27 :ENGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEV 2hq7A 77 :FAGLMLVGTIEILHDRAS T0506 123 :IARYIARYPKAK 2hq7A 95 :KEMLWTDGCEIY T0506 135 :LYLSLPDTRLYRLRTEGVQINGGPARNASNITP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHLKNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9518 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1919505698.pdb -s /var/tmp/to_scwrl_1919505698.seq -o /var/tmp/from_scwrl_1919505698.pdb > /var/tmp/scwrl_1919505698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1919505698.pdb Number of alignments=1177 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 30 :ARDVLHTSRTAALATLD 2hq7A 10 :SNELVESSKIVMVGTNG T0506 48 :VSGYPYTTAT 2hq7A 27 :ENGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEV 2hq7A 77 :FAGLMLVGTIEILHDRAS Number of specific fragments extracted= 4 number of extra gaps= 0 total=9522 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1433928912.pdb -s /var/tmp/to_scwrl_1433928912.seq -o /var/tmp/from_scwrl_1433928912.pdb > /var/tmp/scwrl_1433928912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433928912.pdb Number of alignments=1178 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 30 :ARDVLHTSRTAALATLD 2hq7A 10 :SNELVESSKIVMVGTNG T0506 48 :VSGYPYTTAT 2hq7A 27 :ENGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEV 2hq7A 77 :FAGLMLVGTIEILHDRAS Number of specific fragments extracted= 4 number of extra gaps= 0 total=9526 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1802962832.pdb -s /var/tmp/to_scwrl_1802962832.seq -o /var/tmp/from_scwrl_1802962832.pdb > /var/tmp/scwrl_1802962832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802962832.pdb Number of alignments=1179 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 62 :EPDGTPFFFAAGLTLHARNME 2hq7A 113 :DPDYTALCFTAEWGNYYRHLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=9527 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1259775716.pdb -s /var/tmp/to_scwrl_1259775716.seq -o /var/tmp/from_scwrl_1259775716.pdb > /var/tmp/scwrl_1259775716.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259775716.pdb Number of alignments=1180 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=9527 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIE 2hq7A 27 :ENGYPNIKAMMRLKH T0506 64 :DGT 2hq7A 42 :DGL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLKN T0506 163 :SNITPAD 2hq7A 135 :ITFKIDE Number of specific fragments extracted= 9 number of extra gaps= 0 total=9536 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1581897872.pdb -s /var/tmp/to_scwrl_1581897872.seq -o /var/tmp/from_scwrl_1581897872.pdb > /var/tmp/scwrl_1581897872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581897872.pdb Number of alignments=1181 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 3 :D 2hq7A 3 :D T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIE 2hq7A 27 :ENGYPNIKAMMRLKH T0506 64 :DGT 2hq7A 42 :DGL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 10 number of extra gaps= 0 total=9546 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1199781384.pdb -s /var/tmp/to_scwrl_1199781384.seq -o /var/tmp/from_scwrl_1199781384.pdb > /var/tmp/scwrl_1199781384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199781384.pdb Number of alignments=1182 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIEPDGT 2hq7A 27 :ENGYPNIKAMMRLKHDGLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLKN T0506 163 :SNITPAD 2hq7A 135 :ITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9554 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2032625899.pdb -s /var/tmp/to_scwrl_2032625899.seq -o /var/tmp/from_scwrl_2032625899.pdb > /var/tmp/scwrl_2032625899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2032625899.pdb Number of alignments=1183 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIEPDGT 2hq7A 27 :ENGYPNIKAMMRLKHDGLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9562 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_39655285.pdb -s /var/tmp/to_scwrl_39655285.seq -o /var/tmp/from_scwrl_39655285.pdb > /var/tmp/scwrl_39655285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_39655285.pdb Number of alignments=1184 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIE 2hq7A 27 :ENGYPNIKAMMRLKH T0506 64 :DGT 2hq7A 42 :DGL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 9 number of extra gaps= 0 total=9571 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1206072908.pdb -s /var/tmp/to_scwrl_1206072908.seq -o /var/tmp/from_scwrl_1206072908.pdb > /var/tmp/scwrl_1206072908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1206072908.pdb Number of alignments=1185 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIA 2hq7A 93 :ASKEMLWTDGCE T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9579 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1879160575.pdb -s /var/tmp/to_scwrl_1879160575.seq -o /var/tmp/from_scwrl_1879160575.pdb > /var/tmp/scwrl_1879160575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1879160575.pdb Number of alignments=1186 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IE 2hq7A 41 :HD T0506 64 :DGT 2hq7A 43 :GLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 10 number of extra gaps= 0 total=9589 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1939520468.pdb -s /var/tmp/to_scwrl_1939520468.seq -o /var/tmp/from_scwrl_1939520468.pdb > /var/tmp/scwrl_1939520468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1939520468.pdb Number of alignments=1187 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IE 2hq7A 41 :HD T0506 64 :DGT 2hq7A 43 :GLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIA 2hq7A 93 :ASKEMLWTDGCE T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 10 number of extra gaps= 0 total=9599 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_669057052.pdb -s /var/tmp/to_scwrl_669057052.seq -o /var/tmp/from_scwrl_669057052.pdb > /var/tmp/scwrl_669057052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669057052.pdb Number of alignments=1188 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IE 2hq7A 41 :HD T0506 64 :DGT 2hq7A 43 :GLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 124 :ARYIARYPKA 2hq7A 101 :DGCEIYYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 10 number of extra gaps= 0 total=9609 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1393852372.pdb -s /var/tmp/to_scwrl_1393852372.seq -o /var/tmp/from_scwrl_1393852372.pdb > /var/tmp/scwrl_1393852372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1393852372.pdb Number of alignments=1189 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 125 :RYIARYPKA 2hq7A 102 :GCEIYYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9617 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1143965088.pdb -s /var/tmp/to_scwrl_1143965088.seq -o /var/tmp/from_scwrl_1143965088.pdb > /var/tmp/scwrl_1143965088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1143965088.pdb Number of alignments=1190 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIA 2hq7A 93 :ASKEMLWTDGCE T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9625 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1941623560.pdb -s /var/tmp/to_scwrl_1941623560.seq -o /var/tmp/from_scwrl_1941623560.pdb > /var/tmp/scwrl_1941623560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1941623560.pdb Number of alignments=1191 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 131 :PKAKLYLSL 2hq7A 100 :TDGCEIYYP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2hq7A 114 :PDYTALCFTAEWGNYYRHLKN T0506 163 :SNITPAD 2hq7A 135 :ITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9633 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1103398726.pdb -s /var/tmp/to_scwrl_1103398726.seq -o /var/tmp/from_scwrl_1103398726.pdb > /var/tmp/scwrl_1103398726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1103398726.pdb Number of alignments=1192 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIE 2hq7A 27 :ENGYPNIKAMMRLKH T0506 64 :DGT 2hq7A 42 :DGL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPARN 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLKNI Number of specific fragments extracted= 8 number of extra gaps= 0 total=9641 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_823444268.pdb -s /var/tmp/to_scwrl_823444268.seq -o /var/tmp/from_scwrl_823444268.pdb > /var/tmp/scwrl_823444268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823444268.pdb Number of alignments=1193 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 32 :DVLHTSRTAALATLD 2hq7A 12 :ELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIE 2hq7A 27 :ENGYPNIKAMMRLKH T0506 64 :DGT 2hq7A 42 :DGL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGV 2hq7A 111 :IDDPDYTALCFTAEWG Number of specific fragments extracted= 8 number of extra gaps= 0 total=9649 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2071708057.pdb -s /var/tmp/to_scwrl_2071708057.seq -o /var/tmp/from_scwrl_2071708057.pdb > /var/tmp/scwrl_2071708057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2071708057.pdb Number of alignments=1194 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 29 :VARDVLHTSRTAALATLD 2hq7A 9 :ESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIEPDGT 2hq7A 27 :ENGYPNIKAMMRLKHDGLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGG 2hq7A 111 :IDDPDYTALCFTAEWGNYYRH Number of specific fragments extracted= 7 number of extra gaps= 0 total=9656 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1574609976.pdb -s /var/tmp/to_scwrl_1574609976.seq -o /var/tmp/from_scwrl_1574609976.pdb > /var/tmp/scwrl_1574609976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1574609976.pdb Number of alignments=1195 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIEPDGT 2hq7A 27 :ENGYPNIKAMMRLKHDGLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLKN T0506 163 :SNITPAD 2hq7A 135 :ITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9664 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1053530280.pdb -s /var/tmp/to_scwrl_1053530280.seq -o /var/tmp/from_scwrl_1053530280.pdb > /var/tmp/scwrl_1053530280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053530280.pdb Number of alignments=1196 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIGIE 2hq7A 27 :ENGYPNIKAMMRLKH T0506 64 :DGT 2hq7A 42 :DGL T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 9 number of extra gaps= 0 total=9673 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_616985544.pdb -s /var/tmp/to_scwrl_616985544.seq -o /var/tmp/from_scwrl_616985544.pdb > /var/tmp/scwrl_616985544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_616985544.pdb Number of alignments=1197 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIA 2hq7A 93 :ASKEMLWTDGCE T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLKN T0506 163 :SNITPAD 2hq7A 135 :ITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9681 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1605227932.pdb -s /var/tmp/to_scwrl_1605227932.seq -o /var/tmp/from_scwrl_1605227932.pdb > /var/tmp/scwrl_1605227932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1605227932.pdb Number of alignments=1198 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IE 2hq7A 41 :HD T0506 64 :DGT 2hq7A 43 :GLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIARY 2hq7A 93 :ASKEMLWTDGCEIY T0506 131 :PKA 2hq7A 108 :PLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLKN Number of specific fragments extracted= 9 number of extra gaps= 0 total=9690 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2081102210.pdb -s /var/tmp/to_scwrl_2081102210.seq -o /var/tmp/from_scwrl_2081102210.pdb > /var/tmp/scwrl_2081102210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2081102210.pdb Number of alignments=1199 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IE 2hq7A 41 :HD T0506 64 :DGT 2hq7A 43 :GLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIA 2hq7A 93 :ASKEMLWTDGCE T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLKN T0506 163 :SNITPAD 2hq7A 135 :ITFKIDE Number of specific fragments extracted= 10 number of extra gaps= 0 total=9700 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_921130400.pdb -s /var/tmp/to_scwrl_921130400.seq -o /var/tmp/from_scwrl_921130400.pdb > /var/tmp/scwrl_921130400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921130400.pdb Number of alignments=1200 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IE 2hq7A 41 :HD T0506 64 :DGT 2hq7A 43 :GLK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 47 :FWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 124 :ARYIARYPKA 2hq7A 101 :DGCEIYYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 10 number of extra gaps= 0 total=9710 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1972725053.pdb -s /var/tmp/to_scwrl_1972725053.seq -o /var/tmp/from_scwrl_1972725053.pdb > /var/tmp/scwrl_1972725053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1972725053.pdb Number of alignments=1201 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 125 :RYIARYPKA 2hq7A 102 :GCEIYYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9718 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_377942978.pdb -s /var/tmp/to_scwrl_377942978.seq -o /var/tmp/from_scwrl_377942978.pdb > /var/tmp/scwrl_377942978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_377942978.pdb Number of alignments=1202 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)L170 because last residue in template chain is (2hq7A)I142 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAIARYIA 2hq7A 93 :ASKEMLWTDGCE T0506 129 :RYPKA 2hq7A 106 :YYPLG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2hq7A 111 :IDDPDYTALCFTAEWGNYYRHLK T0506 162 :ASNITPAD 2hq7A 134 :NITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9726 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1605841256.pdb -s /var/tmp/to_scwrl_1605841256.seq -o /var/tmp/from_scwrl_1605841256.pdb > /var/tmp/scwrl_1605841256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1605841256.pdb Number of alignments=1203 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq7A 4 :EKFLIESNELVESSKIVMVGTNG T0506 48 :VSGYPYTTATNIG 2hq7A 27 :ENGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGP 2hq7A 78 :AGLMLVGTIEILHD T0506 117 :DEVPLAI 2hq7A 93 :ASKEMLW T0506 131 :PKAKLYLSL 2hq7A 100 :TDGCEIYYP T0506 140 :PDTRLYRLRTEGVQINGGPA 2hq7A 114 :PDYTALCFTAEWGNYYRHLK Number of specific fragments extracted= 7 number of extra gaps= 0 total=9733 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_286102303.pdb -s /var/tmp/to_scwrl_286102303.seq -o /var/tmp/from_scwrl_286102303.pdb > /var/tmp/scwrl_286102303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_286102303.pdb Number of alignments=1204 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L180 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPDE 2hq7A 78 :AGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYPKAKLYLSLPDTRL 2hq7A 96 :EMLWTDGCEIYYPLGIDDPDYTALCF T0506 160 :RNASNITPADLRTDLSGAEE 2hq7A 122 :TAEWGNYYRHLKNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9740 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_431261919.pdb -s /var/tmp/to_scwrl_431261919.seq -o /var/tmp/from_scwrl_431261919.pdb > /var/tmp/scwrl_431261919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_431261919.pdb Number of alignments=1205 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L180 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGK 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYPKAKLYLSLPDTRL 2hq7A 96 :EMLWTDGCEIYYPLGIDDPDYTALCF T0506 160 :RNASNITPADLRTDLSGAEE 2hq7A 122 :TAEWGNYYRHLKNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9747 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1243250846.pdb -s /var/tmp/to_scwrl_1243250846.seq -o /var/tmp/from_scwrl_1243250846.pdb > /var/tmp/scwrl_1243250846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243250846.pdb Number of alignments=1206 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L180 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGK 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYPKAKLYLSLPDTRLY 2hq7A 96 :EMLWTDGCEIYYPLGIDDPDYTALCFT T0506 161 :NASNITPADLRTDLSGAEE 2hq7A 123 :AEWGNYYRHLKNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9754 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_981436786.pdb -s /var/tmp/to_scwrl_981436786.seq -o /var/tmp/from_scwrl_981436786.pdb > /var/tmp/scwrl_981436786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_981436786.pdb Number of alignments=1207 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2hq7A 28 :NGYPNIKAMMRLKHDGLKKFWLSTNT T0506 75 :TLHARNMETDARISVTLAPFGK 2hq7A 55 :TRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYP 2hq7A 96 :EMLWTDGCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9761 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_203283970.pdb -s /var/tmp/to_scwrl_203283970.seq -o /var/tmp/from_scwrl_203283970.pdb > /var/tmp/scwrl_203283970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203283970.pdb Number of alignments=1208 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGK 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEVPLA 2hq7A 77 :FAGLMLVGTIEILHDRASKEM T0506 126 :YIARYP 2hq7A 103 :CEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9769 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_529696112.pdb -s /var/tmp/to_scwrl_529696112.seq -o /var/tmp/from_scwrl_529696112.pdb > /var/tmp/scwrl_529696112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529696112.pdb Number of alignments=1209 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYT 2hq7A 28 :NGYPNI T0506 55 :TATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 35 :AMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEVPLAI 2hq7A 77 :FAGLMLVGTIEILHDRASKEML T0506 124 :ARYIARYP 2hq7A 101 :DGCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9776 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_636915971.pdb -s /var/tmp/to_scwrl_636915971.seq -o /var/tmp/from_scwrl_636915971.pdb > /var/tmp/scwrl_636915971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636915971.pdb Number of alignments=1210 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTT 2hq7A 28 :NGYPNIK T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 36 :MMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYP 2hq7A 96 :EMLWTDGCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9783 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1463059687.pdb -s /var/tmp/to_scwrl_1463059687.seq -o /var/tmp/from_scwrl_1463059687.pdb > /var/tmp/scwrl_1463059687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463059687.pdb Number of alignments=1211 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)L180 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEP 2hq7A 28 :NGYPNIKAMMRLKHD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 44 :LKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPD 2hq7A 78 :AGLMLVGTIEILHDR T0506 118 :EVPLAIA 2hq7A 94 :SKEMLWT T0506 131 :PKAKLYLS 2hq7A 101 :DGCEIYYP T0506 139 :LPDTRLYRLRT 2hq7A 113 :DPDYTALCFTA T0506 162 :ASNITPADLRTDLSGAEE 2hq7A 124 :EWGNYYRHLKNITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9791 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2111593984.pdb -s /var/tmp/to_scwrl_2111593984.seq -o /var/tmp/from_scwrl_2111593984.pdb > /var/tmp/scwrl_2111593984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2111593984.pdb Number of alignments=1212 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTAT 2hq7A 28 :NGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPDE 2hq7A 78 :AGLMLVGTIEILHDRA T0506 119 :VPLA 2hq7A 95 :KEML T0506 126 :YIARYP 2hq7A 103 :CEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9799 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1836697355.pdb -s /var/tmp/to_scwrl_1836697355.seq -o /var/tmp/from_scwrl_1836697355.pdb > /var/tmp/scwrl_1836697355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836697355.pdb Number of alignments=1213 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)R238 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIG 2hq7A 28 :NGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPD 2hq7A 78 :AGLMLVGTIEILHDR T0506 118 :EVPLA 2hq7A 94 :SKEML T0506 129 :RYPKAKLYLS 2hq7A 99 :WTDGCEIYYP T0506 139 :LPDTRLYRLRTEGVQIN 2hq7A 113 :DPDYTALCFTAEWGNYY T0506 226 :SASDLARLWFAE 2hq7A 130 :RHLKNITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9807 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1348201939.pdb -s /var/tmp/to_scwrl_1348201939.seq -o /var/tmp/from_scwrl_1348201939.pdb > /var/tmp/scwrl_1348201939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1348201939.pdb Number of alignments=1214 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTAT 2hq7A 28 :NGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEVPLAI 2hq7A 77 :FAGLMLVGTIEILHDRASKEML T0506 125 :RYIARYP 2hq7A 102 :GCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9814 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_3765623.pdb -s /var/tmp/to_scwrl_3765623.seq -o /var/tmp/from_scwrl_3765623.pdb > /var/tmp/scwrl_3765623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_3765623.pdb Number of alignments=1215 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYT 2hq7A 28 :NGYPNI T0506 55 :TATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 35 :AMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 122 :AIARYI 2hq7A 94 :SKEMLW T0506 130 :YPKAKLYLS 2hq7A 100 :TDGCEIYYP T0506 139 :LPDTRLYRLRTEGVQINGGP 2hq7A 113 :DPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9822 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_895286618.pdb -s /var/tmp/to_scwrl_895286618.seq -o /var/tmp/from_scwrl_895286618.pdb > /var/tmp/scwrl_895286618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_895286618.pdb Number of alignments=1216 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPDE 2hq7A 78 :AGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYP 2hq7A 96 :EMLWTDGCEIYYP Number of specific fragments extracted= 6 number of extra gaps= 0 total=9828 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1079878868.pdb -s /var/tmp/to_scwrl_1079878868.seq -o /var/tmp/from_scwrl_1079878868.pdb > /var/tmp/scwrl_1079878868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1079878868.pdb Number of alignments=1217 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGK 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPD 2hq7A 77 :FAGLMLVGTIEILHDR Number of specific fragments extracted= 5 number of extra gaps= 0 total=9833 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1943286091.pdb -s /var/tmp/to_scwrl_1943286091.seq -o /var/tmp/from_scwrl_1943286091.pdb > /var/tmp/scwrl_1943286091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943286091.pdb Number of alignments=1218 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2hq7A 4 :EKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGK 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA Number of specific fragments extracted= 5 number of extra gaps= 0 total=9838 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1564343669.pdb -s /var/tmp/to_scwrl_1564343669.seq -o /var/tmp/from_scwrl_1564343669.pdb > /var/tmp/scwrl_1564343669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1564343669.pdb Number of alignments=1219 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGL 2hq7A 28 :NGYPNIKAMMRLKHDGLKKFWLSTNT T0506 75 :TLHARNMETDARISVTLAPFGK 2hq7A 55 :TRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYP 2hq7A 96 :EMLWTDGCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQI 2hq7A 109 :LGIDDPDYTALCFTAEWGNY Number of specific fragments extracted= 6 number of extra gaps= 0 total=9844 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_326247594.pdb -s /var/tmp/to_scwrl_326247594.seq -o /var/tmp/from_scwrl_326247594.pdb > /var/tmp/scwrl_326247594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326247594.pdb Number of alignments=1220 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGI 2hq7A 28 :NGYPNIKAMMRLK T0506 63 :PDGTPFFFAA 2hq7A 41 :HDGLKKFWLS T0506 73 :GLTLHARNMETDARISVTLAPFGK 2hq7A 53 :TSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEVPL 2hq7A 77 :FAGLMLVGTIEILHDRASKE Number of specific fragments extracted= 5 number of extra gaps= 0 total=9849 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_939767533.pdb -s /var/tmp/to_scwrl_939767533.seq -o /var/tmp/from_scwrl_939767533.pdb > /var/tmp/scwrl_939767533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939767533.pdb Number of alignments=1221 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYT 2hq7A 28 :NGYPNI T0506 55 :TATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 35 :AMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEVPLAI 2hq7A 77 :FAGLMLVGTIEILHDRASKEML T0506 124 :ARYIARYP 2hq7A 101 :DGCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQING 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYR Number of specific fragments extracted= 6 number of extra gaps= 0 total=9855 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1358483582.pdb -s /var/tmp/to_scwrl_1358483582.seq -o /var/tmp/from_scwrl_1358483582.pdb > /var/tmp/scwrl_1358483582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358483582.pdb Number of alignments=1222 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTT 2hq7A 28 :NGYPNIK T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 36 :MMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 119 :VPLAIARYIARYP 2hq7A 96 :EMLWTDGCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQIN 2hq7A 109 :LGIDDPDYTALCFTAEWGNYY Number of specific fragments extracted= 6 number of extra gaps= 0 total=9861 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1429646321.pdb -s /var/tmp/to_scwrl_1429646321.seq -o /var/tmp/from_scwrl_1429646321.pdb > /var/tmp/scwrl_1429646321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1429646321.pdb Number of alignments=1223 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIGIEP 2hq7A 28 :NGYPNIKAMMRLKHD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 44 :LKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPD 2hq7A 78 :AGLMLVGTIEILHDR Number of specific fragments extracted= 4 number of extra gaps= 0 total=9865 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1763211800.pdb -s /var/tmp/to_scwrl_1763211800.seq -o /var/tmp/from_scwrl_1763211800.pdb > /var/tmp/scwrl_1763211800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1763211800.pdb Number of alignments=1224 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTAT 2hq7A 28 :NGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPDE 2hq7A 78 :AGLMLVGTIEILHDRA T0506 119 :VPLA 2hq7A 95 :KEML T0506 126 :YIARYP 2hq7A 103 :CEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9873 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1282707992.pdb -s /var/tmp/to_scwrl_1282707992.seq -o /var/tmp/from_scwrl_1282707992.pdb > /var/tmp/scwrl_1282707992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282707992.pdb Number of alignments=1225 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTATNIG 2hq7A 28 :NGYPNIKAMMRL T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2hq7A 41 :HDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKF T0506 103 :PRLTLVGRADRIGPD 2hq7A 78 :AGLMLVGTIEILHDR T0506 118 :EVPLA 2hq7A 94 :SKEML T0506 129 :RYPKAKLYLS 2hq7A 99 :WTDGCEIYYP T0506 139 :LPDTRLYRLRTEGVQINGGP 2hq7A 113 :DPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=9881 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_856772651.pdb -s /var/tmp/to_scwrl_856772651.seq -o /var/tmp/from_scwrl_856772651.pdb > /var/tmp/scwrl_856772651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_856772651.pdb Number of alignments=1226 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 Warning: unaligning (T0506)D169 because last residue in template chain is (2hq7A)I142 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYTTAT 2hq7A 28 :NGYPNIKAM T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 38 :RLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDEVPLAI 2hq7A 77 :FAGLMLVGTIEILHDRASKEML T0506 125 :RYIARYP 2hq7A 102 :GCEIYYP T0506 135 :LYLSLPDTRLYRLRTEGVQINGGP 2hq7A 109 :LGIDDPDYTALCFTAEWGNYYRHL T0506 160 :RNASNITPA 2hq7A 133 :KNITFKIDE Number of specific fragments extracted= 7 number of extra gaps= 0 total=9888 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_669258433.pdb -s /var/tmp/to_scwrl_669258433.seq -o /var/tmp/from_scwrl_669258433.pdb > /var/tmp/scwrl_669258433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669258433.pdb Number of alignments=1227 # 2hq7A read from all-align.a2m # found chain 2hq7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2hq7A)I2 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2hq7A 3 :DEKFLIESNELVESSKIVMVGTNGE T0506 49 :SGYPYT 2hq7A 28 :NGYPNI T0506 55 :TATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2hq7A 35 :AMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNK T0506 102 :LPRLTLVGRADRIGPDE 2hq7A 77 :FAGLMLVGTIEILHDRA T0506 122 :AIARYI 2hq7A 94 :SKEMLW T0506 130 :YPKAKLYLS 2hq7A 100 :TDGCEIYYP T0506 139 :LPDTRLYRLRTEGVQIN 2hq7A 113 :DPDYTALCFTAEWGNYY Number of specific fragments extracted= 7 number of extra gaps= 0 total=9895 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1899693536.pdb -s /var/tmp/to_scwrl_1899693536.seq -o /var/tmp/from_scwrl_1899693536.pdb > /var/tmp/scwrl_1899693536.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899693536.pdb Number of alignments=1228 2hq9A expands to /projects/compbio/data/pdb/2hq9.pdb.gz 2hq9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 2hq9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 495, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 499, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 501, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 503, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 509, because occupancy 0.500 <= existing 0.500 in 2hq9A Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 2hq9A # 2hq9A read from all-align.a2m # adding 2hq9A to template set # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)G210 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)R211 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKGDAL 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQGRGW T0506 103 :PRLTLVGRADRIGPDEV 2hq9A 78 :KSVVVDGRYEELPDLIG T0506 120 :PLAIARYIARYPKAK 2hq9A 99 :RDHAWSVLSKHTDWW T0506 213 :KITSIDPDGIDLAS 2hq9A 132 :VFFRILIEQVSGRE T0506 252 :LLK 2hq9A 146 :ASE Number of specific fragments extracted= 9 number of extra gaps= 2 total=9904 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_314516937.pdb -s /var/tmp/to_scwrl_314516937.seq -o /var/tmp/from_scwrl_314516937.pdb > /var/tmp/scwrl_314516937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_314516937.pdb Number of alignments=1229 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)A231 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)R232 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 22 :AP 2hq9A 1 :ML T0506 24 :FEAVRVARDVLHTSRTAALATLD 2hq9A 5 :TLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHG T0506 98 :DALTLPRLTLVGRADRIGPDEV 2hq9A 73 :QGRGWKSVVVDGRYEELPDLIG T0506 120 :PLAIARYIARYPKAK 2hq9A 99 :RDHAWSVLSKHTDWW T0506 234 :W 2hq9A 132 :V T0506 252 :LLK 2hq9A 146 :ASE Number of specific fragments extracted= 10 number of extra gaps= 2 total=9914 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_602876997.pdb -s /var/tmp/to_scwrl_602876997.seq -o /var/tmp/from_scwrl_602876997.pdb > /var/tmp/scwrl_602876997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602876997.pdb Number of alignments=1230 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 31 :RDVLHTSRTAALATLD 2hq9A 12 :TKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKGDAL 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQGRGW T0506 103 :PRLTLVGRADRIGPDEV 2hq9A 78 :KSVVVDGRYEELPDLIG T0506 120 :PLAIARYIARYPKAK 2hq9A 99 :RDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQING 2hq9A 132 :VFFRILIEQVSGRE Number of specific fragments extracted= 8 number of extra gaps= 2 total=9922 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_673340289.pdb -s /var/tmp/to_scwrl_673340289.seq -o /var/tmp/from_scwrl_673340289.pdb > /var/tmp/scwrl_673340289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_673340289.pdb Number of alignments=1231 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 30 :ARDVLHTSRTAALATLD 2hq9A 11 :CTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHG T0506 98 :DALTLPRLTLVGRADRIGPDEV 2hq9A 73 :QGRGWKSVVVDGRYEELPDLIG T0506 120 :PLAIARYIARYPKAK 2hq9A 99 :RDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQING 2hq9A 132 :VFFRILIEQVSGRE Number of specific fragments extracted= 8 number of extra gaps= 2 total=9930 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_139758343.pdb -s /var/tmp/to_scwrl_139758343.seq -o /var/tmp/from_scwrl_139758343.pdb > /var/tmp/scwrl_139758343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_139758343.pdb Number of alignments=1232 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPFFFA 2hq9A 45 :LYAFSM T0506 73 :G 2hq9A 51 :P T0506 75 :TLHARNMETDARISVTLAP 2hq9A 52 :GKKIEWMRANPRVSVQVDE T0506 227 :ASDLARLWF 2hq9A 71 :HGQGRGWKS T0506 236 :AERVETLKQFEKALAQLLK 2hq9A 86 :YEELPDLIGHKLQRDHAWS Number of specific fragments extracted= 7 number of extra gaps= 1 total=9937 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_980819975.pdb -s /var/tmp/to_scwrl_980819975.seq -o /var/tmp/from_scwrl_980819975.pdb > /var/tmp/scwrl_980819975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_980819975.pdb Number of alignments=1233 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 1 :MLDV 2hq9A 0 :GMLV T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq9A 4 :RTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPFFFA 2hq9A 45 :LYAFSM T0506 73 :G 2hq9A 51 :P T0506 75 :TLHARNMETDARISVTLAP 2hq9A 52 :GKKIEWMRANPRVSVQVDE T0506 227 :ASDLARLWF 2hq9A 71 :HGQGRGWKS T0506 236 :AERVETLKQFEKALAQLLK 2hq9A 86 :YEELPDLIGHKLQRDHAWS Number of specific fragments extracted= 8 number of extra gaps= 1 total=9945 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_131697898.pdb -s /var/tmp/to_scwrl_131697898.seq -o /var/tmp/from_scwrl_131697898.pdb > /var/tmp/scwrl_131697898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_131697898.pdb Number of alignments=1234 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 31 :RDVLHTSRTAALATLD 2hq9A 12 :TKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPFFFA 2hq9A 45 :LYAFSM T0506 73 :G 2hq9A 51 :P T0506 75 :TLHARNMETDARISVTLAP 2hq9A 52 :GKKIEWMRANPRVSVQVDE T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 2hq9A 71 :HGQGRGWKSVVVDGRYEELPDLIGHKLQRDHAWSV Number of specific fragments extracted= 6 number of extra gaps= 1 total=9951 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_425860646.pdb -s /var/tmp/to_scwrl_425860646.seq -o /var/tmp/from_scwrl_425860646.pdb > /var/tmp/scwrl_425860646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_425860646.pdb Number of alignments=1235 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 31 :RDVLHTSRTAALATLD 2hq9A 12 :TKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPFFFA 2hq9A 45 :LYAFSM T0506 73 :G 2hq9A 51 :P T0506 75 :TLHARNMETDARISVTLAP 2hq9A 52 :GKKIEWMRANPRVSVQVDE T0506 96 :KGDALTLPRLTLVGRADRIGPDEVPLAIARYIARY 2hq9A 71 :HGQGRGWKSVVVDGRYEELPDLIGHKLQRDHAWSV Number of specific fragments extracted= 6 number of extra gaps= 1 total=9957 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1412081894.pdb -s /var/tmp/to_scwrl_1412081894.seq -o /var/tmp/from_scwrl_1412081894.pdb > /var/tmp/scwrl_1412081894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412081894.pdb Number of alignments=1236 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set T0506 81 :METDARISVTLAPFGKG 2hq9A 58 :MRANPRVSVQVDEHGQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=9958 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 135 :LYLSLPD 2hq9A 36 :LYYAYSD T0506 144 :LYRLRTEGVQINGGP 2hq9A 45 :LYAFSMPGKKIEWMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=9960 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIARYPKA 2hq9A 98 :QRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 8 number of extra gaps= 1 total=9968 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1374948745.pdb -s /var/tmp/to_scwrl_1374948745.seq -o /var/tmp/from_scwrl_1374948745.pdb > /var/tmp/scwrl_1374948745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1374948745.pdb Number of alignments=1237 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 95 :HK T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 10 number of extra gaps= 1 total=9978 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1407297431.pdb -s /var/tmp/to_scwrl_1407297431.seq -o /var/tmp/from_scwrl_1407297431.pdb > /var/tmp/scwrl_1407297431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407297431.pdb Number of alignments=1238 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIA 2hq9A 98 :QRDHAWSVLSK T0506 130 :Y 2hq9A 113 :W T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 9 number of extra gaps= 1 total=9987 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1615365864.pdb -s /var/tmp/to_scwrl_1615365864.seq -o /var/tmp/from_scwrl_1615365864.pdb > /var/tmp/scwrl_1615365864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615365864.pdb Number of alignments=1239 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :E 2hq9A 96 :K T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :RY 2hq9A 112 :WW T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 10 number of extra gaps= 1 total=9997 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1904644857.pdb -s /var/tmp/to_scwrl_1904644857.seq -o /var/tmp/from_scwrl_1904644857.pdb > /var/tmp/scwrl_1904644857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1904644857.pdb Number of alignments=1240 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :E 2hq9A 96 :K T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :RY 2hq9A 112 :WW T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 10 number of extra gaps= 1 total=10007 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2044213403.pdb -s /var/tmp/to_scwrl_2044213403.seq -o /var/tmp/from_scwrl_2044213403.pdb > /var/tmp/scwrl_2044213403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2044213403.pdb Number of alignments=1241 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 95 :HK T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 10 number of extra gaps= 1 total=10017 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_930941905.pdb -s /var/tmp/to_scwrl_930941905.seq -o /var/tmp/from_scwrl_930941905.pdb > /var/tmp/scwrl_930941905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930941905.pdb Number of alignments=1242 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIA 2hq9A 98 :QRDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 9 number of extra gaps= 1 total=10026 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1868755195.pdb -s /var/tmp/to_scwrl_1868755195.seq -o /var/tmp/from_scwrl_1868755195.pdb > /var/tmp/scwrl_1868755195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1868755195.pdb Number of alignments=1243 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATL 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIARY 2hq9A 98 :QRDHAWSVLSKHT T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 8 number of extra gaps= 1 total=10034 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1733427111.pdb -s /var/tmp/to_scwrl_1733427111.seq -o /var/tmp/from_scwrl_1733427111.pdb > /var/tmp/scwrl_1733427111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1733427111.pdb Number of alignments=1244 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 4 :VAPPVI 2hq9A 1 :MLVRTL T0506 26 :AVRVARDVLHTSRTAALATL 2hq9A 7 :SALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :D 2hq9A 94 :G T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 10 number of extra gaps= 1 total=10044 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_131660198.pdb -s /var/tmp/to_scwrl_131660198.seq -o /var/tmp/from_scwrl_131660198.pdb > /var/tmp/scwrl_131660198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_131660198.pdb Number of alignments=1245 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 4 :VAPPVIT 2hq9A 1 :MLVRTLS T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 94 :GH T0506 119 :VPLAIARYIARY 2hq9A 99 :RDHAWSVLSKHT T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 9 number of extra gaps= 1 total=10053 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1872520818.pdb -s /var/tmp/to_scwrl_1872520818.seq -o /var/tmp/from_scwrl_1872520818.pdb > /var/tmp/scwrl_1872520818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1872520818.pdb Number of alignments=1246 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 1 :M 2hq9A 0 :G T0506 14 :TKI 2hq9A 1 :MLV T0506 23 :PFEAVRVARDVLHTSRTAALATL 2hq9A 4 :RTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 95 :HK T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 12 number of extra gaps= 1 total=10065 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_481230082.pdb -s /var/tmp/to_scwrl_481230082.seq -o /var/tmp/from_scwrl_481230082.pdb > /var/tmp/scwrl_481230082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_481230082.pdb Number of alignments=1247 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)A159 because last residue in template chain is (2hq9A)E148 T0506 22 :A 2hq9A 1 :M T0506 23 :PFEAVRVARDVLHTSRTAALATL 2hq9A 4 :RTLSALECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQINGGP 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 10 number of extra gaps= 1 total=10075 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1211539066.pdb -s /var/tmp/to_scwrl_1211539066.seq -o /var/tmp/from_scwrl_1211539066.pdb > /var/tmp/scwrl_1211539066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1211539066.pdb Number of alignments=1248 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)K134 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATL 2hq9A 9 :LECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIARYPKA 2hq9A 98 :QRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQI 2hq9A 132 :VFFRILIEQVSG Number of specific fragments extracted= 8 number of extra gaps= 1 total=10083 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1668323262.pdb -s /var/tmp/to_scwrl_1668323262.seq -o /var/tmp/from_scwrl_1668323262.pdb > /var/tmp/scwrl_1668323262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1668323262.pdb Number of alignments=1249 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 29 :VARDVLHTSRTAALATL 2hq9A 10 :ECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 95 :HK T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQI 2hq9A 132 :VFFRILIEQVSG Number of specific fragments extracted= 10 number of extra gaps= 1 total=10093 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2045573751.pdb -s /var/tmp/to_scwrl_2045573751.seq -o /var/tmp/from_scwrl_2045573751.pdb > /var/tmp/scwrl_2045573751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045573751.pdb Number of alignments=1250 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATL 2hq9A 9 :LECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIA 2hq9A 98 :QRDHAWSVLSK T0506 130 :Y 2hq9A 113 :W T0506 143 :RLYRLRTEGVQI 2hq9A 132 :VFFRILIEQVSG Number of specific fragments extracted= 9 number of extra gaps= 1 total=10102 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1537786660.pdb -s /var/tmp/to_scwrl_1537786660.seq -o /var/tmp/from_scwrl_1537786660.pdb > /var/tmp/scwrl_1537786660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537786660.pdb Number of alignments=1251 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATL 2hq9A 9 :LECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :E 2hq9A 96 :K T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :RY 2hq9A 112 :WW T0506 143 :RLYRLRTEGVQI 2hq9A 132 :VFFRILIEQVSG Number of specific fragments extracted= 10 number of extra gaps= 1 total=10112 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_460607149.pdb -s /var/tmp/to_scwrl_460607149.seq -o /var/tmp/from_scwrl_460607149.pdb > /var/tmp/scwrl_460607149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460607149.pdb Number of alignments=1252 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATL 2hq9A 9 :LECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :E 2hq9A 96 :K T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :RY 2hq9A 112 :WW T0506 143 :RLYRLRTEGVQI 2hq9A 132 :VFFRILIEQVSG Number of specific fragments extracted= 10 number of extra gaps= 1 total=10122 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1256573687.pdb -s /var/tmp/to_scwrl_1256573687.seq -o /var/tmp/from_scwrl_1256573687.pdb > /var/tmp/scwrl_1256573687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1256573687.pdb Number of alignments=1253 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATLD 2hq9A 9 :LECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 95 :HK T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR Number of specific fragments extracted= 10 number of extra gaps= 1 total=10132 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_819949335.pdb -s /var/tmp/to_scwrl_819949335.seq -o /var/tmp/from_scwrl_819949335.pdb > /var/tmp/scwrl_819949335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_819949335.pdb Number of alignments=1254 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATL 2hq9A 9 :LECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIA 2hq9A 98 :QRDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR Number of specific fragments extracted= 9 number of extra gaps= 1 total=10141 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_76335302.pdb -s /var/tmp/to_scwrl_76335302.seq -o /var/tmp/from_scwrl_76335302.pdb > /var/tmp/scwrl_76335302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_76335302.pdb Number of alignments=1255 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 29 :VARDVLHTSRTAALATL 2hq9A 10 :ECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 118 :EVPLAIARYIARY 2hq9A 98 :QRDHAWSVLSKHT T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR Number of specific fragments extracted= 8 number of extra gaps= 1 total=10149 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_391798033.pdb -s /var/tmp/to_scwrl_391798033.seq -o /var/tmp/from_scwrl_391798033.pdb > /var/tmp/scwrl_391798033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_391798033.pdb Number of alignments=1256 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATL 2hq9A 9 :LECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :D 2hq9A 94 :G T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQING 2hq9A 132 :VFFRILIEQVSGRE Number of specific fragments extracted= 9 number of extra gaps= 1 total=10158 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1676721986.pdb -s /var/tmp/to_scwrl_1676721986.seq -o /var/tmp/from_scwrl_1676721986.pdb > /var/tmp/scwrl_1676721986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676721986.pdb Number of alignments=1257 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATLD 2hq9A 9 :LECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIE 2hq9A 28 :DGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 94 :GH T0506 119 :VPLAIARYIARY 2hq9A 99 :RDHAWSVLSKHT T0506 143 :RLYRLRTEGVQING 2hq9A 132 :VFFRILIEQVSGRE Number of specific fragments extracted= 8 number of extra gaps= 1 total=10166 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_745593736.pdb -s /var/tmp/to_scwrl_745593736.seq -o /var/tmp/from_scwrl_745593736.pdb > /var/tmp/scwrl_745593736.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745593736.pdb Number of alignments=1258 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 29 :VARDVLHTSRTAALATL 2hq9A 10 :ECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 117 :DE 2hq9A 95 :HK T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR Number of specific fragments extracted= 10 number of extra gaps= 1 total=10176 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_144007923.pdb -s /var/tmp/to_scwrl_144007923.seq -o /var/tmp/from_scwrl_144007923.pdb > /var/tmp/scwrl_144007923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_144007923.pdb Number of alignments=1259 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)Y130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 29 :VARDVLHTSRTAALATL 2hq9A 10 :ECTKVLTANRVGRLACA T0506 48 :VSGYPYTTATNIGIE 2hq9A 27 :KDGQPYVVPLYYAYS T0506 64 :D 2hq9A 42 :D T0506 67 :PFFFAAG 2hq9A 45 :LYAFSMP T0506 75 :TLHARNMETDARISVTLAPFGKG 2hq9A 52 :GKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD T0506 119 :VPLAIARYIA 2hq9A 99 :RDHAWSVLSK T0506 129 :R 2hq9A 113 :W T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR Number of specific fragments extracted= 9 number of extra gaps= 1 total=10185 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1991238923.pdb -s /var/tmp/to_scwrl_1991238923.seq -o /var/tmp/from_scwrl_1991238923.pdb > /var/tmp/scwrl_1991238923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991238923.pdb Number of alignments=1260 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)T172 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 233 :LWFAERVETLKQFEK 2hq9A 132 :VFFRILIEQVSGREA T0506 253 :LK 2hq9A 147 :SE Number of specific fragments extracted= 7 number of extra gaps= 1 total=10192 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1348470732.pdb -s /var/tmp/to_scwrl_1348470732.seq -o /var/tmp/from_scwrl_1348470732.pdb > /var/tmp/scwrl_1348470732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1348470732.pdb Number of alignments=1261 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)T172 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)L191 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGI 2hq9A 28 :DGQPYVVPLYYAY T0506 64 :DG 2hq9A 41 :SD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 175 :SGAEELMAAAESEATR 2hq9A 132 :VFFRILIEQVSGREAS Number of specific fragments extracted= 7 number of extra gaps= 1 total=10199 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_817348212.pdb -s /var/tmp/to_scwrl_817348212.seq -o /var/tmp/from_scwrl_817348212.pdb > /var/tmp/scwrl_817348212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_817348212.pdb Number of alignments=1262 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)T172 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :T 2hq9A 45 :L T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 46 :YAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 175 :SGAEELMAAAESE 2hq9A 132 :VFFRILIEQVSGR T0506 244 :QFE 2hq9A 145 :EAS Number of specific fragments extracted= 8 number of extra gaps= 1 total=10207 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2130997266.pdb -s /var/tmp/to_scwrl_2130997266.seq -o /var/tmp/from_scwrl_2130997266.pdb > /var/tmp/scwrl_2130997266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130997266.pdb Number of alignments=1263 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)L174 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQINGG 2hq9A 132 :VFFRILIEQVSGREA T0506 173 :D 2hq9A 147 :S Number of specific fragments extracted= 7 number of extra gaps= 0 total=10214 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_181807060.pdb -s /var/tmp/to_scwrl_181807060.seq -o /var/tmp/from_scwrl_181807060.pdb > /var/tmp/scwrl_181807060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_181807060.pdb Number of alignments=1264 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)L174 because last residue in template chain is (2hq9A)E148 T0506 6 :PPVITP 2hq9A 1 :MLVRTL T0506 26 :AVRVARDVLHTSRTAALATLD 2hq9A 7 :SALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPFF 2hq9A 45 :LYAF T0506 72 :AGLTLHARNMETDARISVTLAPFGKG 2hq9A 49 :SMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR T0506 161 :N 2hq9A 145 :E T0506 172 :TD 2hq9A 146 :AS Number of specific fragments extracted= 10 number of extra gaps= 1 total=10224 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_949046111.pdb -s /var/tmp/to_scwrl_949046111.seq -o /var/tmp/from_scwrl_949046111.pdb > /var/tmp/scwrl_949046111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_949046111.pdb Number of alignments=1265 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 1 :MLDV 2hq9A 0 :GMLV T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq9A 4 :RTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARY 2hq9A 94 :GHKLQRDHAWSVL T0506 143 :RLYRLRTEGVQINGG 2hq9A 132 :VFFRILIEQVSGREA T0506 163 :S 2hq9A 147 :S Number of specific fragments extracted= 8 number of extra gaps= 1 total=10232 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_409374265.pdb -s /var/tmp/to_scwrl_409374265.seq -o /var/tmp/from_scwrl_409374265.pdb > /var/tmp/scwrl_409374265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_409374265.pdb Number of alignments=1266 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)L174 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQINGG 2hq9A 132 :VFFRILIEQVSGREA T0506 163 :S 2hq9A 147 :S Number of specific fragments extracted= 7 number of extra gaps= 1 total=10239 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1593888954.pdb -s /var/tmp/to_scwrl_1593888954.seq -o /var/tmp/from_scwrl_1593888954.pdb > /var/tmp/scwrl_1593888954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593888954.pdb Number of alignments=1267 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 Warning: unaligning (T0506)L174 because last residue in template chain is (2hq9A)E148 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2hq9A 1 :MLVRTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR T0506 168 :A 2hq9A 145 :E T0506 172 :TD 2hq9A 146 :AS Number of specific fragments extracted= 8 number of extra gaps= 1 total=10247 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_176511209.pdb -s /var/tmp/to_scwrl_176511209.seq -o /var/tmp/from_scwrl_176511209.pdb > /var/tmp/scwrl_176511209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176511209.pdb Number of alignments=1268 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 14 :TKIEPSA 2hq9A 1 :MLVRTLS T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQINGG 2hq9A 132 :VFFRILIEQVSGREA T0506 235 :F 2hq9A 147 :S Number of specific fragments extracted= 8 number of extra gaps= 1 total=10255 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1816671697.pdb -s /var/tmp/to_scwrl_1816671697.seq -o /var/tmp/from_scwrl_1816671697.pdb > /var/tmp/scwrl_1816671697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1816671697.pdb Number of alignments=1269 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2hq9A)G0 Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 17 :EPSAGAPF 2hq9A 1 :MLVRTLSA T0506 28 :RVARDVLHTSRTAALATLD 2hq9A 9 :LECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARY 2hq9A 98 :QRDHAWSVLSKHT T0506 143 :RLYRLRTEGVQINGG 2hq9A 132 :VFFRILIEQVSGREA T0506 227 :A 2hq9A 147 :S Number of specific fragments extracted= 8 number of extra gaps= 1 total=10263 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1061771173.pdb -s /var/tmp/to_scwrl_1061771173.seq -o /var/tmp/from_scwrl_1061771173.pdb > /var/tmp/scwrl_1061771173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1061771173.pdb Number of alignments=1270 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 1 :ML 2hq9A 0 :GM T0506 20 :AGAPF 2hq9A 2 :LVRTL T0506 26 :AVRVARDVLHTSRTAALATLD 2hq9A 7 :SALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQINGG 2hq9A 132 :VFFRILIEQVSGREA T0506 163 :S 2hq9A 147 :S Number of specific fragments extracted= 9 number of extra gaps= 1 total=10272 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2081156066.pdb -s /var/tmp/to_scwrl_2081156066.seq -o /var/tmp/from_scwrl_2081156066.pdb > /var/tmp/scwrl_2081156066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2081156066.pdb Number of alignments=1271 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 1 :ML 2hq9A 0 :GM T0506 5 :A 2hq9A 2 :L T0506 16 :I 2hq9A 3 :V T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2hq9A 4 :RTLSALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPF 2hq9A 45 :LYA T0506 71 :AAGLTLHARNMETDARISVTLAPFGKG 2hq9A 48 :FSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARY 2hq9A 94 :GHKLQRDHAWSVL T0506 143 :RLYRLRTEGVQIN 2hq9A 132 :VFFRILIEQVSGR T0506 161 :NAS 2hq9A 145 :EAS Number of specific fragments extracted= 11 number of extra gaps= 1 total=10283 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1713401453.pdb -s /var/tmp/to_scwrl_1713401453.seq -o /var/tmp/from_scwrl_1713401453.pdb > /var/tmp/scwrl_1713401453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1713401453.pdb Number of alignments=1272 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 T0506 32 :DVLHTSRTAALATLD 2hq9A 13 :KVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW Number of specific fragments extracted= 5 number of extra gaps= 1 total=10288 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1992713077.pdb -s /var/tmp/to_scwrl_1992713077.seq -o /var/tmp/from_scwrl_1992713077.pdb > /var/tmp/scwrl_1992713077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1992713077.pdb Number of alignments=1273 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 33 :VLHTSRTAALATLD 2hq9A 14 :VLTANRVGRLACAK T0506 49 :SGYPYTTATNIGI 2hq9A 28 :DGQPYVVPLYYAY T0506 64 :DG 2hq9A 41 :SD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGP 2hq9A 75 :RGWKSVVVDGRYEELPD Number of specific fragments extracted= 5 number of extra gaps= 1 total=10293 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1802427614.pdb -s /var/tmp/to_scwrl_1802427614.seq -o /var/tmp/from_scwrl_1802427614.pdb > /var/tmp/scwrl_1802427614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802427614.pdb Number of alignments=1274 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 31 :RDVLHTSRTAALATLD 2hq9A 12 :TKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :T 2hq9A 45 :L T0506 69 :FFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 46 :YAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARY 2hq9A 94 :GHKLQRDHAWSVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=10299 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1299344917.pdb -s /var/tmp/to_scwrl_1299344917.seq -o /var/tmp/from_scwrl_1299344917.pdb > /var/tmp/scwrl_1299344917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1299344917.pdb Number of alignments=1275 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQ 2hq9A 132 :VFFRILIEQVS Number of specific fragments extracted= 6 number of extra gaps= 0 total=10305 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2124373275.pdb -s /var/tmp/to_scwrl_2124373275.seq -o /var/tmp/from_scwrl_2124373275.pdb > /var/tmp/scwrl_2124373275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124373275.pdb Number of alignments=1276 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 28 :RVARDVLHTSRTAALATLD 2hq9A 9 :LECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPFF 2hq9A 45 :LYAF T0506 72 :AGLTLHARNMETDARISVTLAPFGKG 2hq9A 49 :SMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGV 2hq9A 132 :VFFRILIEQV Number of specific fragments extracted= 7 number of extra gaps= 1 total=10312 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1527464785.pdb -s /var/tmp/to_scwrl_1527464785.seq -o /var/tmp/from_scwrl_1527464785.pdb > /var/tmp/scwrl_1527464785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527464785.pdb Number of alignments=1277 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARY 2hq9A 94 :GHKLQRDHAWSVL T0506 143 :RLYRLRTEGVQ 2hq9A 132 :VFFRILIEQVS Number of specific fragments extracted= 6 number of extra gaps= 1 total=10318 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1780575000.pdb -s /var/tmp/to_scwrl_1780575000.seq -o /var/tmp/from_scwrl_1780575000.pdb > /var/tmp/scwrl_1780575000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780575000.pdb Number of alignments=1278 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQ 2hq9A 132 :VFFRILIEQVS Number of specific fragments extracted= 6 number of extra gaps= 1 total=10324 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1188428694.pdb -s /var/tmp/to_scwrl_1188428694.seq -o /var/tmp/from_scwrl_1188428694.pdb > /var/tmp/scwrl_1188428694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188428694.pdb Number of alignments=1279 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 T0506 32 :DVLHTSRTAALATLD 2hq9A 13 :KVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW Number of specific fragments extracted= 5 number of extra gaps= 1 total=10329 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1048304402.pdb -s /var/tmp/to_scwrl_1048304402.seq -o /var/tmp/from_scwrl_1048304402.pdb > /var/tmp/scwrl_1048304402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048304402.pdb Number of alignments=1280 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQ 2hq9A 132 :VFFRILIEQVS Number of specific fragments extracted= 6 number of extra gaps= 1 total=10335 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1678665104.pdb -s /var/tmp/to_scwrl_1678665104.seq -o /var/tmp/from_scwrl_1678665104.pdb > /var/tmp/scwrl_1678665104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1678665104.pdb Number of alignments=1281 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 29 :VARDVLHTSRTAALATLD 2hq9A 10 :ECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARY 2hq9A 98 :QRDHAWSVLSKHT T0506 143 :RLYRLRTEGVQI 2hq9A 132 :VFFRILIEQVSG Number of specific fragments extracted= 6 number of extra gaps= 1 total=10341 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_578731709.pdb -s /var/tmp/to_scwrl_578731709.seq -o /var/tmp/from_scwrl_578731709.pdb > /var/tmp/scwrl_578731709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578731709.pdb Number of alignments=1282 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2hq9A)A129 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2hq9A 45 :LYAFSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARYPKAKLYL 2hq9A 94 :GHKLQRDHAWSVLSKHTDWW T0506 143 :RLYRLRTEGVQI 2hq9A 132 :VFFRILIEQVSG Number of specific fragments extracted= 6 number of extra gaps= 1 total=10347 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1508911550.pdb -s /var/tmp/to_scwrl_1508911550.seq -o /var/tmp/from_scwrl_1508911550.pdb > /var/tmp/scwrl_1508911550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508911550.pdb Number of alignments=1283 # 2hq9A read from all-align.a2m # found chain 2hq9A in template set Warning: unaligning (T0506)D64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2hq9A)H44 Warning: unaligning (T0506)G65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2hq9A)H44 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2hq9A)A129 Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (2hq9A)H131 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (2hq9A)H131 T0506 27 :VRVARDVLHTSRTAALATLD 2hq9A 8 :ALECTKVLTANRVGRLACAK T0506 49 :SGYPYTTATNIGIEP 2hq9A 28 :DGQPYVVPLYYAYSD T0506 66 :TPF 2hq9A 45 :LYA T0506 71 :AAGLTLHARNMETDARISVTLAPFGKG 2hq9A 48 :FSMPGKKIEWMRANPRVSVQVDEHGQG T0506 100 :LTLPRLTLVGRADRIGPD 2hq9A 75 :RGWKSVVVDGRYEELPDL T0506 118 :EVPLAIARYIARY 2hq9A 94 :GHKLQRDHAWSVL T0506 143 :RLYRLRTEGVQ 2hq9A 132 :VFFRILIEQVS Number of specific fragments extracted= 7 number of extra gaps= 1 total=10354 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_787755145.pdb -s /var/tmp/to_scwrl_787755145.seq -o /var/tmp/from_scwrl_787755145.pdb > /var/tmp/scwrl_787755145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787755145.pdb Number of alignments=1284 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)Q244 because last residue in template chain is (2htdA)A121 T0506 8 :VITPRGTK 2htdA 4 :LNTNKLTE T0506 29 :VARDVLHT 2htdA 12 :EQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTT 2htdA 29 :ADGNPQVG T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 38 :KGSMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYI 2htdA 79 :HTAVRVLATAEVHEDDDYAKKVLAKT T0506 228 :SDLARLWFAERVETLK 2htdA 105 :EFPNAFVVNLNIEEVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=10362 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1398681043.pdb -s /var/tmp/to_scwrl_1398681043.seq -o /var/tmp/from_scwrl_1398681043.pdb > /var/tmp/scwrl_1398681043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1398681043.pdb Number of alignments=1285 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)Q244 because last residue in template chain is (2htdA)A121 T0506 8 :VITPR 2htdA 4 :LNTNK T0506 25 :EA 2htdA 11 :EE T0506 30 :ARDVLHT 2htdA 13 :QVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTATNIGIEPDGT 2htdA 29 :ADGNPQVGPKGSMTVLDPS T0506 67 :PFFFAAGLTLHARNMETD 2htdA 49 :LQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYI 2htdA 79 :HTAVRVLATAEVHEDDDYAKKVLAKT T0506 229 :DLARLWFAERVETLK 2htdA 106 :FPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10371 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1585246852.pdb -s /var/tmp/to_scwrl_1585246852.seq -o /var/tmp/from_scwrl_1585246852.pdb > /var/tmp/scwrl_1585246852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585246852.pdb Number of alignments=1286 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 31 :RDVLHT 2htdA 14 :VNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTT 2htdA 29 :ADGNPQVG T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 38 :KGSMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDE 2htdA 79 :HTAVRVLATAEVHEDDD T0506 122 :AIARYIARYPKAKLYL 2htdA 96 :YAKKVLAKTEFPNAFV Number of specific fragments extracted= 7 number of extra gaps= 1 total=10378 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1179553178.pdb -s /var/tmp/to_scwrl_1179553178.seq -o /var/tmp/from_scwrl_1179553178.pdb > /var/tmp/scwrl_1179553178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1179553178.pdb Number of alignments=1287 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 31 :RDVLHT 2htdA 14 :VNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTATNIGIEPDGT 2htdA 29 :ADGNPQVGPKGSMTVLDPS T0506 67 :PFFFAAGLTLHARNMETD 2htdA 49 :LQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDE 2htdA 79 :HTAVRVLATAEVHEDDD T0506 122 :AIARYIARYPKAKL 2htdA 96 :YAKKVLAKTEFPNA Number of specific fragments extracted= 7 number of extra gaps= 1 total=10385 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_927919383.pdb -s /var/tmp/to_scwrl_927919383.seq -o /var/tmp/from_scwrl_927919383.pdb > /var/tmp/scwrl_927919383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_927919383.pdb Number of alignments=1288 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)L144 because last residue in template chain is (2htdA)A121 T0506 1 :MLDVAPPVITPR 2htdA 1 :MKKLNTNKLTEE T0506 31 :RDVLHTSRTAALATLDP 2htdA 13 :QVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIG 2htdA 30 :DGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTR 2htdA 79 :HTAVRVLATAEVHEDDDYAKKVLAKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 6 number of extra gaps= 1 total=10391 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_183356941.pdb -s /var/tmp/to_scwrl_183356941.seq -o /var/tmp/from_scwrl_183356941.pdb > /var/tmp/scwrl_183356941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_183356941.pdb Number of alignments=1289 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 1 :MLDVAPPVITPR 2htdA 1 :MKKLNTNKLTEE T0506 31 :RDVLHTSRTAALATLDP 2htdA 13 :QVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEPDGTPFFFA 2htdA 30 :DGNPQVGPKGSMTVLDPSHLQYL T0506 72 :AGLTLHARNMETD 2htdA 54 :KTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2htdA 79 :HTAVRVLATAEVHEDDDYAKKVLAKTEFPNAFVVNLNIEE Number of specific fragments extracted= 6 number of extra gaps= 1 total=10397 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1323561101.pdb -s /var/tmp/to_scwrl_1323561101.seq -o /var/tmp/from_scwrl_1323561101.pdb > /var/tmp/scwrl_1323561101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1323561101.pdb Number of alignments=1290 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 31 :RDVLHTSRTAALATLDP 2htdA 13 :QVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIG 2htdA 30 :DGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARY 2htdA 79 :HTAVRVLATAEVHEDDDYAKKVLAKTEFP Number of specific fragments extracted= 5 number of extra gaps= 1 total=10402 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_771674659.pdb -s /var/tmp/to_scwrl_771674659.seq -o /var/tmp/from_scwrl_771674659.pdb > /var/tmp/scwrl_771674659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_771674659.pdb Number of alignments=1291 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 31 :RDVLHTSRTAALATLDP 2htdA 13 :QVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEPDGTPFFFA 2htdA 30 :DGNPQVGPKGSMTVLDPSHLQYL T0506 72 :AGLTLHARNMETD 2htdA 54 :KTKGEAYENIKRG T0506 87 :ISVTLAPFGK 2htdA 69 :VALVAADVPS T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIAR 2htdA 79 :HTAVRVLATAEVHEDDDYAKKVLAKTEF Number of specific fragments extracted= 5 number of extra gaps= 1 total=10407 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1531827673.pdb -s /var/tmp/to_scwrl_1531827673.seq -o /var/tmp/from_scwrl_1531827673.pdb > /var/tmp/scwrl_1531827673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1531827673.pdb Number of alignments=1292 # 2htdA read from all-align.a2m # found chain 2htdA in template set T0506 51 :YPYTTATNIGIE 2htdA 106 :FPNAFVVNLNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=10408 # 2htdA read from all-align.a2m # found chain 2htdA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=10408 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLHT 2htdA 6 :TNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10417 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2140909313.pdb -s /var/tmp/to_scwrl_2140909313.seq -o /var/tmp/from_scwrl_2140909313.pdb > /var/tmp/scwrl_2140909313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2140909313.pdb Number of alignments=1293 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2htdA 2 :KKLNTNKLTEEQVNLFKNNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10424 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_755188278.pdb -s /var/tmp/to_scwrl_755188278.seq -o /var/tmp/from_scwrl_755188278.pdb > /var/tmp/scwrl_755188278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755188278.pdb Number of alignments=1294 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVL 2htdA 6 :TNKLTEEQVNLF T0506 36 :TSRTAALATLD 2htdA 18 :KNNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10433 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1713634734.pdb -s /var/tmp/to_scwrl_1713634734.seq -o /var/tmp/from_scwrl_1713634734.pdb > /var/tmp/scwrl_1713634734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1713634734.pdb Number of alignments=1295 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATNIGIEPDGT 2htdA 29 :ADGNPQVGPKGSMTVLDPS T0506 67 :PFFFAAGLTLHARNMETD 2htdA 49 :LQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10442 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_942471777.pdb -s /var/tmp/to_scwrl_942471777.seq -o /var/tmp/from_scwrl_942471777.pdb > /var/tmp/scwrl_942471777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942471777.pdb Number of alignments=1296 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLHT 2htdA 6 :TNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTATNIGIEPD 2htdA 29 :ADGNPQVGPKGSMTVLD T0506 65 :GTPFFFAAGLTLHARNMETD 2htdA 47 :SHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10451 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1164562543.pdb -s /var/tmp/to_scwrl_1164562543.seq -o /var/tmp/from_scwrl_1164562543.pdb > /var/tmp/scwrl_1164562543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164562543.pdb Number of alignments=1297 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLHT 2htdA 6 :TNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTATN 2htdA 29 :ADGNPQVGPKG T0506 59 :IGIE 2htdA 42 :TVLD T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 10 number of extra gaps= 1 total=10461 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1160040041.pdb -s /var/tmp/to_scwrl_1160040041.seq -o /var/tmp/from_scwrl_1160040041.pdb > /var/tmp/scwrl_1160040041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160040041.pdb Number of alignments=1298 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :V 2htdA 97 :A T0506 124 :ARYIAR 2htdA 98 :KKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 10 number of extra gaps= 1 total=10471 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1118982985.pdb -s /var/tmp/to_scwrl_1118982985.seq -o /var/tmp/from_scwrl_1118982985.pdb > /var/tmp/scwrl_1118982985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118982985.pdb Number of alignments=1299 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10480 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_833750594.pdb -s /var/tmp/to_scwrl_833750594.seq -o /var/tmp/from_scwrl_833750594.pdb > /var/tmp/scwrl_833750594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833750594.pdb Number of alignments=1300 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLHT 2htdA 6 :TNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTAT 2htdA 29 :ADGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 40 :SMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLA 2htdA 97 :AKKV T0506 127 :IAR 2htdA 101 :LAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 10 number of extra gaps= 1 total=10490 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_74327567.pdb -s /var/tmp/to_scwrl_74327567.seq -o /var/tmp/from_scwrl_74327567.pdb > /var/tmp/scwrl_74327567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_74327567.pdb Number of alignments=1301 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVRVARD 2htdA 2 :KKLNTNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTAT 2htdA 29 :ADGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 40 :SMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPD 2htdA 80 :TAVRVLATAEVHEDD T0506 120 :PLAIA 2htdA 95 :DYAKK T0506 126 :YIAR 2htdA 100 :VLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10499 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1052655406.pdb -s /var/tmp/to_scwrl_1052655406.seq -o /var/tmp/from_scwrl_1052655406.pdb > /var/tmp/scwrl_1052655406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052655406.pdb Number of alignments=1302 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10508 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_399668400.pdb -s /var/tmp/to_scwrl_399668400.seq -o /var/tmp/from_scwrl_399668400.pdb > /var/tmp/scwrl_399668400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_399668400.pdb Number of alignments=1303 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATN 2htdA 29 :ADGNPQVGPKG T0506 59 :IGIE 2htdA 42 :TVLD T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLA 2htdA 97 :AKKV T0506 127 :IAR 2htdA 101 :LAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 11 number of extra gaps= 1 total=10519 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2067040645.pdb -s /var/tmp/to_scwrl_2067040645.seq -o /var/tmp/from_scwrl_2067040645.pdb > /var/tmp/scwrl_2067040645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067040645.pdb Number of alignments=1304 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLHT 2htdA 6 :TNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGV 2htdA 104 :TEFPNAFVVNLNIEEV Number of specific fragments extracted= 9 number of extra gaps= 1 total=10528 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_707599373.pdb -s /var/tmp/to_scwrl_707599373.seq -o /var/tmp/from_scwrl_707599373.pdb > /var/tmp/scwrl_707599373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_707599373.pdb Number of alignments=1305 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 36 :TSRTAALATLD 2htdA 18 :KNNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGV 2htdA 104 :TEFPNAFVVNLNIEEV Number of specific fragments extracted= 7 number of extra gaps= 1 total=10535 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1699013317.pdb -s /var/tmp/to_scwrl_1699013317.seq -o /var/tmp/from_scwrl_1699013317.pdb > /var/tmp/scwrl_1699013317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1699013317.pdb Number of alignments=1306 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 23 :PFEAVRVARDVL 2htdA 6 :TNKLTEEQVNLF T0506 36 :TSRTAALATLD 2htdA 18 :KNNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGV 2htdA 104 :TEFPNAFVVNLNIEEV Number of specific fragments extracted= 8 number of extra gaps= 1 total=10543 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2043930273.pdb -s /var/tmp/to_scwrl_2043930273.seq -o /var/tmp/from_scwrl_2043930273.pdb > /var/tmp/scwrl_2043930273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2043930273.pdb Number of alignments=1307 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 25 :EAVRVARDVL 2htdA 8 :KLTEEQVNLF T0506 36 :TSRTAALATLD 2htdA 18 :KNNLVYLATVD T0506 48 :VSGYPYTTATNIGIEPDGT 2htdA 29 :ADGNPQVGPKGSMTVLDPS T0506 67 :PFFFAAGLTLHARNMETD 2htdA 49 :LQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=10551 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_87580512.pdb -s /var/tmp/to_scwrl_87580512.seq -o /var/tmp/from_scwrl_87580512.pdb > /var/tmp/scwrl_87580512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87580512.pdb Number of alignments=1308 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 28 :RVARDVL 2htdA 11 :EEQVNLF T0506 36 :TSRTAALATLD 2htdA 18 :KNNLVYLATVD T0506 48 :VSGYPYTTATNIGIEPD 2htdA 29 :ADGNPQVGPKGSMTVLD T0506 65 :GTPFFFAAGLTLHARNMETD 2htdA 47 :SHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=10559 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1332104670.pdb -s /var/tmp/to_scwrl_1332104670.seq -o /var/tmp/from_scwrl_1332104670.pdb > /var/tmp/scwrl_1332104670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332104670.pdb Number of alignments=1309 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLHT 2htdA 6 :TNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTATN 2htdA 29 :ADGNPQVGPKG T0506 59 :IGIE 2htdA 42 :TVLD T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 10 number of extra gaps= 2 total=10569 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1084875321.pdb -s /var/tmp/to_scwrl_1084875321.seq -o /var/tmp/from_scwrl_1084875321.pdb > /var/tmp/scwrl_1084875321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084875321.pdb Number of alignments=1310 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :V 2htdA 97 :A T0506 124 :ARYIAR 2htdA 98 :KKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 10 number of extra gaps= 1 total=10579 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1135884913.pdb -s /var/tmp/to_scwrl_1135884913.seq -o /var/tmp/from_scwrl_1135884913.pdb > /var/tmp/scwrl_1135884913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1135884913.pdb Number of alignments=1311 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLAIAR 2htdA 97 :AKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=10587 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_863286129.pdb -s /var/tmp/to_scwrl_863286129.seq -o /var/tmp/from_scwrl_863286129.pdb > /var/tmp/scwrl_863286129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863286129.pdb Number of alignments=1312 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEA 2htdA 2 :KKLNTNKLTEEQ T0506 31 :RDVLHT 2htdA 14 :VNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTAT 2htdA 29 :ADGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 40 :SMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLA 2htdA 97 :AKKV T0506 127 :IAR 2htdA 101 :LAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 10 number of extra gaps= 1 total=10597 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1663607030.pdb -s /var/tmp/to_scwrl_1663607030.seq -o /var/tmp/from_scwrl_1663607030.pdb > /var/tmp/scwrl_1663607030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663607030.pdb Number of alignments=1313 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVRVARD 2htdA 2 :KKLNTNKLTEEQVNLFKN T0506 38 :RTAALATLD 2htdA 20 :NLVYLATVD T0506 48 :VSGYPYTTAT 2htdA 29 :ADGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETD 2htdA 40 :SMTVLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPD 2htdA 80 :TAVRVLATAEVHEDD T0506 120 :PLAIA 2htdA 95 :DYAKK T0506 126 :YIAR 2htdA 100 :VLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10606 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_497312817.pdb -s /var/tmp/to_scwrl_497312817.seq -o /var/tmp/from_scwrl_497312817.pdb > /var/tmp/scwrl_497312817.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_497312817.pdb Number of alignments=1314 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATNIG 2htdA 29 :ADGNPQVGPKGSM T0506 61 :IEPDGTPFFFAAGLTLHARNMETD 2htdA 43 :VLDPSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 122 :AIARYIAR 2htdA 96 :YAKKVLAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10615 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1651041273.pdb -s /var/tmp/to_scwrl_1651041273.seq -o /var/tmp/from_scwrl_1651041273.pdb > /var/tmp/scwrl_1651041273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1651041273.pdb Number of alignments=1315 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 20 :AGA 2htdA 2 :KKL T0506 23 :PFEAVRVARDVLH 2htdA 6 :TNKLTEEQVNLFK T0506 37 :SRTAALATLD 2htdA 19 :NNLVYLATVD T0506 48 :VSGYPYTTATN 2htdA 29 :ADGNPQVGPKG T0506 59 :IGIE 2htdA 42 :TVLD T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPDE 2htdA 80 :TAVRVLATAEVHEDDD T0506 119 :VPLA 2htdA 97 :AKKV T0506 127 :IAR 2htdA 101 :LAK T0506 137 :LSLPDTRLYRLRTEGVQ 2htdA 104 :TEFPNAFVVNLNIEEVF Number of specific fragments extracted= 11 number of extra gaps= 1 total=10626 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_914804427.pdb -s /var/tmp/to_scwrl_914804427.seq -o /var/tmp/from_scwrl_914804427.pdb > /var/tmp/scwrl_914804427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_914804427.pdb Number of alignments=1316 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 19 :SAGAPFEAVRVARD 2htdA 2 :KKLNTNKLTEEQVN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2htdA 30 :DGNPQVGPKGSMTVLDPSHLQYLE T0506 73 :GLTLHARNMETD 2htdA 55 :TKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEVPL 2htdA 75 :DVPSHTAVRVLATAEVHEDDDYAK T0506 132 :KAKLYLSLPDTRLYRLRTEGVQ 2htdA 99 :KVLAKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10633 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2082559669.pdb -s /var/tmp/to_scwrl_2082559669.seq -o /var/tmp/from_scwrl_2082559669.pdb > /var/tmp/scwrl_2082559669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2082559669.pdb Number of alignments=1317 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2htdA 2 :KKLNTNKLTEEQVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQ 2htdA 96 :YAKKVLAKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 6 number of extra gaps= 1 total=10639 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_683110805.pdb -s /var/tmp/to_scwrl_683110805.seq -o /var/tmp/from_scwrl_683110805.pdb > /var/tmp/scwrl_683110805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_683110805.pdb Number of alignments=1318 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2htdA 2 :KKLNTNKLTEEQVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2htdA 30 :DGNPQVGPKGSMTVLDPSHLQYLE T0506 73 :GLTLHARNMETD 2htdA 55 :TKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEVP 2htdA 75 :DVPSHTAVRVLATAEVHEDDDYA T0506 123 :IARY 2htdA 98 :KKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10646 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1842723810.pdb -s /var/tmp/to_scwrl_1842723810.seq -o /var/tmp/from_scwrl_1842723810.pdb > /var/tmp/scwrl_1842723810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842723810.pdb Number of alignments=1319 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVR 2htdA 2 :KKLNTNKLTEEQVN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTAT 2htdA 30 :DGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAG 2htdA 41 :MTVLDPSHLQYLEKTK T0506 75 :TLHARNMETD 2htdA 57 :GEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10655 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_118432964.pdb -s /var/tmp/to_scwrl_118432964.seq -o /var/tmp/from_scwrl_118432964.pdb > /var/tmp/scwrl_118432964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_118432964.pdb Number of alignments=1320 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVR 2htdA 2 :KKLNTNKLTEEQVN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGT 2htdA 47 :SHL T0506 68 :FFFAAGLTLHARNMETD 2htdA 50 :QYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEV 2htdA 75 :DVPSHTAVRVLATAEVHEDDDY T0506 122 :AIA 2htdA 97 :AKK T0506 133 :AKLYLSLPDTRLYRLRTEGVQ 2htdA 100 :VLAKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10664 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2006671906.pdb -s /var/tmp/to_scwrl_2006671906.seq -o /var/tmp/from_scwrl_2006671906.pdb > /var/tmp/scwrl_2006671906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006671906.pdb Number of alignments=1321 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVR 2htdA 2 :KKLNTNKLTEEQVN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTAT 2htdA 30 :DGNPQVGPK T0506 58 :NIGIEPDGT 2htdA 41 :MTVLDPSHL T0506 68 :FFFAAGLTLHARNMETD 2htdA 50 :QYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10673 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_466914822.pdb -s /var/tmp/to_scwrl_466914822.seq -o /var/tmp/from_scwrl_466914822.pdb > /var/tmp/scwrl_466914822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466914822.pdb Number of alignments=1322 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2htdA 2 :KKLNTNKLTEEQVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEV 2htdA 75 :DVPSHTAVRVLATAEVHEDDDY T0506 122 :AIARY 2htdA 97 :AKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10680 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1650260637.pdb -s /var/tmp/to_scwrl_1650260637.seq -o /var/tmp/from_scwrl_1650260637.pdb > /var/tmp/scwrl_1650260637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650260637.pdb Number of alignments=1323 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVRVAR 2htdA 2 :KKLNTNKLTEEQVNLFK T0506 37 :SRTAALATLDP 2htdA 19 :NNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=10688 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2000097573.pdb -s /var/tmp/to_scwrl_2000097573.seq -o /var/tmp/from_scwrl_2000097573.pdb > /var/tmp/scwrl_2000097573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000097573.pdb Number of alignments=1324 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVRVARD 2htdA 2 :KKLNTNKLTEEQVNLFKN T0506 38 :RTAALATLDP 2htdA 20 :NLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEVPL 2htdA 75 :DVPSHTAVRVLATAEVHEDDDYAK T0506 132 :KAKLYLSLPDTRLYRLRTEGVQ 2htdA 99 :KVLAKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10695 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1222103100.pdb -s /var/tmp/to_scwrl_1222103100.seq -o /var/tmp/from_scwrl_1222103100.pdb > /var/tmp/scwrl_1222103100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1222103100.pdb Number of alignments=1325 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVRVAR 2htdA 2 :KKLNTNKLTEEQVNLFK T0506 39 :TAALATLDP 2htdA 21 :LVYLATVDA T0506 49 :SGYPYTTA 2htdA 30 :DGNPQVGP T0506 62 :EP 2htdA 38 :KG T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPD 2htdA 80 :TAVRVLATAEVHEDD T0506 120 :PLAIARY 2htdA 95 :DYAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10704 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1216411724.pdb -s /var/tmp/to_scwrl_1216411724.seq -o /var/tmp/from_scwrl_1216411724.pdb > /var/tmp/scwrl_1216411724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1216411724.pdb Number of alignments=1326 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 15 :KIEPSAGAPFEAVR 2htdA 2 :KKLNTNKLTEEQVN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFF 2htdA 47 :SHLQYLE T0506 72 :AGLTLHARNMETD 2htdA 54 :KTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10713 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_795085703.pdb -s /var/tmp/to_scwrl_795085703.seq -o /var/tmp/from_scwrl_795085703.pdb > /var/tmp/scwrl_795085703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_795085703.pdb Number of alignments=1327 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 Warning: unaligning (T0506)I154 because last residue in template chain is (2htdA)A121 T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2htdA 2 :KKLNTNKLTEEQVNLFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10720 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_239181997.pdb -s /var/tmp/to_scwrl_239181997.seq -o /var/tmp/from_scwrl_239181997.pdb > /var/tmp/scwrl_239181997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_239181997.pdb Number of alignments=1328 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 38 :RTAALATLDP 2htdA 20 :NLVYLATVDA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2htdA 30 :DGNPQVGPKGSMTVLDPSHLQYLE T0506 73 :GLTLHARNMETD 2htdA 55 :TKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEVPL 2htdA 75 :DVPSHTAVRVLATAEVHEDDDYAK T0506 132 :KAKLYLSLPDTRLYRLRTEGV 2htdA 99 :KVLAKTEFPNAFVVNLNIEEV Number of specific fragments extracted= 6 number of extra gaps= 1 total=10726 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_228968120.pdb -s /var/tmp/to_scwrl_228968120.seq -o /var/tmp/from_scwrl_228968120.pdb > /var/tmp/scwrl_228968120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_228968120.pdb Number of alignments=1329 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 42 :LATLDP 2htdA 24 :LATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEVP 2htdA 75 :DVPSHTAVRVLATAEVHEDDDYA Number of specific fragments extracted= 5 number of extra gaps= 1 total=10731 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1914068689.pdb -s /var/tmp/to_scwrl_1914068689.seq -o /var/tmp/from_scwrl_1914068689.pdb > /var/tmp/scwrl_1914068689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914068689.pdb Number of alignments=1330 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 37 :SRTAALATLDP 2htdA 19 :NNLVYLATVDA T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2htdA 30 :DGNPQVGPKGSMTVLDPSHLQYLE T0506 73 :GLTLHARNMETD 2htdA 55 :TKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEVP 2htdA 75 :DVPSHTAVRVLATAEVHEDDDYA T0506 123 :IARY 2htdA 98 :KKVL T0506 135 :LYLSLPDTRLYRLRTEGV 2htdA 102 :AKTEFPNAFVVNLNIEEV Number of specific fragments extracted= 7 number of extra gaps= 1 total=10738 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1072932591.pdb -s /var/tmp/to_scwrl_1072932591.seq -o /var/tmp/from_scwrl_1072932591.pdb > /var/tmp/scwrl_1072932591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072932591.pdb Number of alignments=1331 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 36 :TSRTAALATLDP 2htdA 18 :KNNLVYLATVDA T0506 49 :SGYPYTTAT 2htdA 30 :DGNPQVGPK T0506 58 :NIGIEPDGTPFFFAAG 2htdA 41 :MTVLDPSHLQYLEKTK T0506 75 :TLHARNMETD 2htdA 57 :GEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=10746 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_303295687.pdb -s /var/tmp/to_scwrl_303295687.seq -o /var/tmp/from_scwrl_303295687.pdb > /var/tmp/scwrl_303295687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_303295687.pdb Number of alignments=1332 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 40 :AALATLDP 2htdA 22 :VYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGT 2htdA 47 :SHL T0506 68 :FFFAAGLTLHARNMETD 2htdA 50 :QYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEV 2htdA 75 :DVPSHTAVRVLATAEVHEDDDY T0506 122 :AIA 2htdA 97 :AKK T0506 133 :AKLYLSLPDTRLYRLRTEGVQ 2htdA 100 :VLAKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 8 number of extra gaps= 1 total=10754 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_819240448.pdb -s /var/tmp/to_scwrl_819240448.seq -o /var/tmp/from_scwrl_819240448.pdb > /var/tmp/scwrl_819240448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_819240448.pdb Number of alignments=1333 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVR 2htdA 2 :KKLNTNKLTEEQVN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTAT 2htdA 30 :DGNPQVGPK T0506 58 :NIGIEPDGT 2htdA 41 :MTVLDPSHL T0506 68 :FFFAAGLTLHARNMETD 2htdA 50 :QYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10763 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1472600990.pdb -s /var/tmp/to_scwrl_1472600990.seq -o /var/tmp/from_scwrl_1472600990.pdb > /var/tmp/scwrl_1472600990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472600990.pdb Number of alignments=1334 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEV 2htdA 75 :DVPSHTAVRVLATAEVHEDDDY T0506 122 :AIARY 2htdA 97 :AKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10770 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_222852685.pdb -s /var/tmp/to_scwrl_222852685.seq -o /var/tmp/from_scwrl_222852685.pdb > /var/tmp/scwrl_222852685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_222852685.pdb Number of alignments=1335 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 41 :ALATLDP 2htdA 23 :YLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGV 2htdA 102 :AKTEFPNAFVVNLNIEEV Number of specific fragments extracted= 7 number of extra gaps= 1 total=10777 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1526839820.pdb -s /var/tmp/to_scwrl_1526839820.seq -o /var/tmp/from_scwrl_1526839820.pdb > /var/tmp/scwrl_1526839820.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526839820.pdb Number of alignments=1336 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVRVARD 2htdA 2 :KKLNTNKLTEEQVNLFKN T0506 38 :RTAALATLDP 2htdA 20 :NLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDEVPL 2htdA 75 :DVPSHTAVRVLATAEVHEDDDYAK T0506 132 :KAKLYLSLPDTRLYRLRTEGVQ 2htdA 99 :KVLAKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 7 number of extra gaps= 1 total=10784 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1024130661.pdb -s /var/tmp/to_scwrl_1024130661.seq -o /var/tmp/from_scwrl_1024130661.pdb > /var/tmp/scwrl_1024130661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1024130661.pdb Number of alignments=1337 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVRVAR 2htdA 2 :KKLNTNKLTEEQVNLFK T0506 39 :TAALATLDP 2htdA 21 :LVYLATVDA T0506 49 :SGYPYTTA 2htdA 30 :DGNPQVGP T0506 62 :EP 2htdA 38 :KG T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLAPFGKG 2htdA 69 :VALVAADVPSH T0506 103 :PRLTLVGRADRIGPD 2htdA 80 :TAVRVLATAEVHEDD T0506 120 :PLAIARY 2htdA 95 :DYAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10793 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_119299312.pdb -s /var/tmp/to_scwrl_119299312.seq -o /var/tmp/from_scwrl_119299312.pdb > /var/tmp/scwrl_119299312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_119299312.pdb Number of alignments=1338 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)G13 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 15 :KIEPSAGAPFEAVR 2htdA 2 :KKLNTNKLTEEQVN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFF 2htdA 47 :SHLQYLE T0506 72 :AGLTLHARNMETD 2htdA 54 :KTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10802 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1614420332.pdb -s /var/tmp/to_scwrl_1614420332.seq -o /var/tmp/from_scwrl_1614420332.pdb > /var/tmp/scwrl_1614420332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1614420332.pdb Number of alignments=1339 # 2htdA read from all-align.a2m # found chain 2htdA in template set Warning: unaligning (T0506)R12 because first residue in template chain is (2htdA)G0 Warning: unaligning (T0506)G13 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)M1 Warning: unaligning (T0506)A85 because of BadResidue code BAD_PEPTIDE in next template residue (2htdA)K68 Warning: unaligning (T0506)R86 because of BadResidue code BAD_PEPTIDE at template residue (2htdA)K68 T0506 14 :TKIEPSAGAPFE 2htdA 2 :KKLNTNKLTEEQ T0506 27 :VR 2htdA 14 :VN T0506 34 :LHTSRTAALATLDP 2htdA 16 :LFKNNLVYLATVDA T0506 49 :SGYPYTTATNIGIEP 2htdA 30 :DGNPQVGPKGSMTVL T0506 64 :DGTPFFFAAGLTLHARNMETD 2htdA 46 :PSHLQYLEKTKGEAYENIKRG T0506 87 :ISVTLA 2htdA 69 :VALVAA T0506 98 :DALTLPRLTLVGRADRIGPDE 2htdA 75 :DVPSHTAVRVLATAEVHEDDD T0506 121 :LAIARY 2htdA 96 :YAKKVL T0506 135 :LYLSLPDTRLYRLRTEGVQ 2htdA 102 :AKTEFPNAFVVNLNIEEVF Number of specific fragments extracted= 9 number of extra gaps= 1 total=10811 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_208751685.pdb -s /var/tmp/to_scwrl_208751685.seq -o /var/tmp/from_scwrl_208751685.pdb > /var/tmp/scwrl_208751685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_208751685.pdb Number of alignments=1340 2htiA expands to /projects/compbio/data/pdb/2hti.pdb.gz 2htiA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2htiA read from all-align.a2m # adding 2htiA to template set # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)R211 because last residue in template chain is (2htiA)P165 T0506 27 :VRVARDVLHTSRTAALATLD 2htiA 14 :EKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARYP 2htiA 112 :GTEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=10816 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1204174633.pdb -s /var/tmp/to_scwrl_1204174633.seq -o /var/tmp/from_scwrl_1204174633.pdb > /var/tmp/scwrl_1204174633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1204174633.pdb Number of alignments=1341 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)A231 because last residue in template chain is (2htiA)P165 T0506 26 :AVRVARDVLHTSRTAALATLD 2htiA 13 :DEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARYP 2htiA 112 :GTEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=10821 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_602821599.pdb -s /var/tmp/to_scwrl_602821599.seq -o /var/tmp/from_scwrl_602821599.pdb > /var/tmp/scwrl_602821599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602821599.pdb Number of alignments=1342 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 30 :ARDVLHTSRTAALATLD 2htiA 17 :ITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARYP 2htiA 112 :GTEAMQQMLDKYV T0506 142 :TRLYRLRTEGVQINGG 2htiA 148 :TAIYKISCRERTAKVN Number of specific fragments extracted= 6 number of extra gaps= 1 total=10827 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1072037814.pdb -s /var/tmp/to_scwrl_1072037814.seq -o /var/tmp/from_scwrl_1072037814.pdb > /var/tmp/scwrl_1072037814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072037814.pdb Number of alignments=1343 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 30 :ARDVLHTSRTAALATLD 2htiA 17 :ITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARYP 2htiA 112 :GTEAMQQMLDKYV T0506 142 :TRLYRLRTEGVQINGG 2htiA 148 :TAIYKISCRERTAKVN Number of specific fragments extracted= 6 number of extra gaps= 1 total=10833 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_720298017.pdb -s /var/tmp/to_scwrl_720298017.seq -o /var/tmp/from_scwrl_720298017.pdb > /var/tmp/scwrl_720298017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_720298017.pdb Number of alignments=1344 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)E150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)S143 Warning: unaligning (T0506)G151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)L144 Warning: unaligning (T0506)V152 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)Q153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)I154 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPD 2htiA 34 :NDQPYVIPLNFVWHNH T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2htiA 50 :AIYFHGASEGRKIKMIEANPEVCFTIC T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARYP 2htiA 110 :EEGTEAMQQMLDKYV T0506 155 :N 2htiA 148 :T Number of specific fragments extracted= 6 number of extra gaps= 0 total=10839 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1100134415.pdb -s /var/tmp/to_scwrl_1100134415.seq -o /var/tmp/from_scwrl_1100134415.pdb > /var/tmp/scwrl_1100134415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100134415.pdb Number of alignments=1345 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)E150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)S143 Warning: unaligning (T0506)G151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)L144 Warning: unaligning (T0506)V152 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)Q153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)I154 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPD 2htiA 34 :NDQPYVIPLNFVWHNH T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2htiA 50 :AIYFHGASEGRKIKMIEANPEVCFTIC T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARYP 2htiA 110 :EEGTEAMQQMLDKYV T0506 155 :N 2htiA 148 :T Number of specific fragments extracted= 6 number of extra gaps= 0 total=10845 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_575595440.pdb -s /var/tmp/to_scwrl_575595440.seq -o /var/tmp/from_scwrl_575595440.pdb > /var/tmp/scwrl_575595440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_575595440.pdb Number of alignments=1346 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 31 :RDVLHTSRTAALATLD 2htiA 18 :TEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPD 2htiA 34 :NDQPYVIPLNFVWHNH T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2htiA 50 :AIYFHGASEGRKIKMIEANPEVCFTIC T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARYP 2htiA 110 :EEGTEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=10850 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1635102443.pdb -s /var/tmp/to_scwrl_1635102443.seq -o /var/tmp/from_scwrl_1635102443.pdb > /var/tmp/scwrl_1635102443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1635102443.pdb Number of alignments=1347 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 30 :ARDVLHTSRTAALATLD 2htiA 17 :ITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPD 2htiA 34 :NDQPYVIPLNFVWHNH T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2htiA 50 :AIYFHGASEGRKIKMIEANPEVCFTIC T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARYP 2htiA 110 :EEGTEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=10855 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1035210439.pdb -s /var/tmp/to_scwrl_1035210439.seq -o /var/tmp/from_scwrl_1035210439.pdb > /var/tmp/scwrl_1035210439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035210439.pdb Number of alignments=1348 # 2htiA read from all-align.a2m # found chain 2htiA in template set T0506 59 :IGIEPDGTPFFFAAGLTLH 2htiA 29 :LGLSTNDQPYVIPLNFVWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=10856 # 2htiA read from all-align.a2m # found chain 2htiA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=10856 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A177 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRL 2htiA 148 :TAIYKI T0506 166 :TPADLRTDLSG 2htiA 154 :SCRERTAKVNE Number of specific fragments extracted= 7 number of extra gaps= 1 total=10863 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1258706245.pdb -s /var/tmp/to_scwrl_1258706245.seq -o /var/tmp/from_scwrl_1258706245.pdb > /var/tmp/scwrl_1258706245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1258706245.pdb Number of alignments=1349 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)P167 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT T0506 162 :ASNIT 2htiA 160 :AKVNE Number of specific fragments extracted= 7 number of extra gaps= 1 total=10870 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1330342606.pdb -s /var/tmp/to_scwrl_1330342606.seq -o /var/tmp/from_scwrl_1330342606.pdb > /var/tmp/scwrl_1330342606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1330342606.pdb Number of alignments=1350 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICE T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGV 2htiA 148 :TAIYKISCRER Number of specific fragments extracted= 6 number of extra gaps= 1 total=10876 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1153643402.pdb -s /var/tmp/to_scwrl_1153643402.seq -o /var/tmp/from_scwrl_1153643402.pdb > /var/tmp/scwrl_1153643402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153643402.pdb Number of alignments=1351 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)P167 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQIN 2htiA 148 :TAIYKISCRERTAK T0506 164 :NIT 2htiA 162 :VNE Number of specific fragments extracted= 7 number of extra gaps= 1 total=10883 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1117894504.pdb -s /var/tmp/to_scwrl_1117894504.seq -o /var/tmp/from_scwrl_1117894504.pdb > /var/tmp/scwrl_1117894504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1117894504.pdb Number of alignments=1352 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICE T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQIN 2htiA 148 :TAIYKISCRERTAK Number of specific fragments extracted= 6 number of extra gaps= 1 total=10889 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1797257429.pdb -s /var/tmp/to_scwrl_1797257429.seq -o /var/tmp/from_scwrl_1797257429.pdb > /var/tmp/scwrl_1797257429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1797257429.pdb Number of alignments=1353 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A159 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQINGGP 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 6 number of extra gaps= 1 total=10895 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_656420393.pdb -s /var/tmp/to_scwrl_656420393.seq -o /var/tmp/from_scwrl_656420393.pdb > /var/tmp/scwrl_656420393.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_656420393.pdb Number of alignments=1354 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A159 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQINGGP 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 6 number of extra gaps= 1 total=10901 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_970508431.pdb -s /var/tmp/to_scwrl_970508431.seq -o /var/tmp/from_scwrl_970508431.pdb > /var/tmp/scwrl_970508431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_970508431.pdb Number of alignments=1355 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A159 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICE T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQINGGP 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 6 number of extra gaps= 1 total=10907 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_871876883.pdb -s /var/tmp/to_scwrl_871876883.seq -o /var/tmp/from_scwrl_871876883.pdb > /var/tmp/scwrl_871876883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_871876883.pdb Number of alignments=1356 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A159 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQINGGP 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 6 number of extra gaps= 1 total=10913 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1872832118.pdb -s /var/tmp/to_scwrl_1872832118.seq -o /var/tmp/from_scwrl_1872832118.pdb > /var/tmp/scwrl_1872832118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1872832118.pdb Number of alignments=1357 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)V8 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A159 because last residue in template chain is (2htiA)P165 T0506 9 :IT 2htiA 11 :CK T0506 23 :PF 2htiA 13 :DE T0506 28 :RVARDVLHTSRTAALATLD 2htiA 15 :KKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQINGGP 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 8 number of extra gaps= 1 total=10921 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1765594134.pdb -s /var/tmp/to_scwrl_1765594134.seq -o /var/tmp/from_scwrl_1765594134.pdb > /var/tmp/scwrl_1765594134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765594134.pdb Number of alignments=1358 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)P167 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQING 2htiA 148 :TAIYKISCRERTAKV T0506 165 :IT 2htiA 163 :NE Number of specific fragments extracted= 7 number of extra gaps= 1 total=10928 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1111058879.pdb -s /var/tmp/to_scwrl_1111058879.seq -o /var/tmp/from_scwrl_1111058879.pdb > /var/tmp/scwrl_1111058879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111058879.pdb Number of alignments=1359 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A159 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQINGGP 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 6 number of extra gaps= 1 total=10934 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2101800238.pdb -s /var/tmp/to_scwrl_2101800238.seq -o /var/tmp/from_scwrl_2101800238.pdb > /var/tmp/scwrl_2101800238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101800238.pdb Number of alignments=1360 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRL 2htiA 148 :TAIYKI Number of specific fragments extracted= 6 number of extra gaps= 1 total=10940 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1532179176.pdb -s /var/tmp/to_scwrl_1532179176.seq -o /var/tmp/from_scwrl_1532179176.pdb > /var/tmp/scwrl_1532179176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1532179176.pdb Number of alignments=1361 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 25 :EAVRVARDVLHTSRTAALATLD 2htiA 12 :KDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY Number of specific fragments extracted= 5 number of extra gaps= 0 total=10945 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_36507823.pdb -s /var/tmp/to_scwrl_36507823.seq -o /var/tmp/from_scwrl_36507823.pdb > /var/tmp/scwrl_36507823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_36507823.pdb Number of alignments=1362 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICE T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRL 2htiA 148 :TAIYKI Number of specific fragments extracted= 6 number of extra gaps= 1 total=10951 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_257612278.pdb -s /var/tmp/to_scwrl_257612278.seq -o /var/tmp/from_scwrl_257612278.pdb > /var/tmp/scwrl_257612278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_257612278.pdb Number of alignments=1363 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 25 :EAVRVARDVLHTSRTAALATLD 2htiA 12 :KDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQI 2htiA 148 :TAIYKISCRERTA Number of specific fragments extracted= 6 number of extra gaps= 1 total=10957 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_203935977.pdb -s /var/tmp/to_scwrl_203935977.seq -o /var/tmp/from_scwrl_203935977.pdb > /var/tmp/scwrl_203935977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203935977.pdb Number of alignments=1364 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICE T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT Number of specific fragments extracted= 6 number of extra gaps= 1 total=10963 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1509108813.pdb -s /var/tmp/to_scwrl_1509108813.seq -o /var/tmp/from_scwrl_1509108813.pdb > /var/tmp/scwrl_1509108813.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1509108813.pdb Number of alignments=1365 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQIN 2htiA 148 :TAIYKISCRERTAK Number of specific fragments extracted= 6 number of extra gaps= 1 total=10969 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_480464964.pdb -s /var/tmp/to_scwrl_480464964.seq -o /var/tmp/from_scwrl_480464964.pdb > /var/tmp/scwrl_480464964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_480464964.pdb Number of alignments=1366 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQIN 2htiA 148 :TAIYKISCRERTAK Number of specific fragments extracted= 6 number of extra gaps= 1 total=10975 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1730775797.pdb -s /var/tmp/to_scwrl_1730775797.seq -o /var/tmp/from_scwrl_1730775797.pdb > /var/tmp/scwrl_1730775797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1730775797.pdb Number of alignments=1367 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 25 :EAVRVARDVLHTSRTAALATLD 2htiA 12 :KDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICE T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEG 2htiA 148 :TAIYKISCRE Number of specific fragments extracted= 6 number of extra gaps= 1 total=10981 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_385755827.pdb -s /var/tmp/to_scwrl_385755827.seq -o /var/tmp/from_scwrl_385755827.pdb > /var/tmp/scwrl_385755827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_385755827.pdb Number of alignments=1368 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 25 :EAVRVARDVLHTSRTAALATLD 2htiA 12 :KDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT Number of specific fragments extracted= 6 number of extra gaps= 1 total=10987 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_599764276.pdb -s /var/tmp/to_scwrl_599764276.seq -o /var/tmp/from_scwrl_599764276.pdb > /var/tmp/scwrl_599764276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599764276.pdb Number of alignments=1369 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)A159 because last residue in template chain is (2htiA)P165 T0506 22 :APFE 2htiA 11 :CKDE T0506 28 :RVARDVLHTSRTAALATLD 2htiA 15 :KKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQINGGP 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 7 number of extra gaps= 1 total=10994 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1197712483.pdb -s /var/tmp/to_scwrl_1197712483.seq -o /var/tmp/from_scwrl_1197712483.pdb > /var/tmp/scwrl_1197712483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197712483.pdb Number of alignments=1370 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQIN 2htiA 148 :TAIYKISCRERTAK Number of specific fragments extracted= 6 number of extra gaps= 1 total=11000 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_594507512.pdb -s /var/tmp/to_scwrl_594507512.seq -o /var/tmp/from_scwrl_594507512.pdb > /var/tmp/scwrl_594507512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_594507512.pdb Number of alignments=1371 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIE 2htiA 34 :NDQPYVIPLNFVWH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 48 :NHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGP 2htiA 94 :YMSVIIFGTIEPVSA T0506 117 :DEVPLAIARYIARY 2htiA 110 :EEGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQIN 2htiA 148 :TAIYKISCRERTAK Number of specific fragments extracted= 6 number of extra gaps= 1 total=11006 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1803938909.pdb -s /var/tmp/to_scwrl_1803938909.seq -o /var/tmp/from_scwrl_1803938909.pdb > /var/tmp/scwrl_1803938909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1803938909.pdb Number of alignments=1372 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)D173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)S143 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)L144 Warning: unaligning (T0506)S175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)G176 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)A177 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)K195 because last residue in template chain is (2htiA)P165 T0506 15 :KIEPSAGAP 2htiA 11 :CKDEKKITE T0506 33 :VLHTSRTAALATLD 2htiA 20 :FLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARYP 2htiA 112 :GTEAMQQMLDKYV T0506 178 :EELMAAAESEATRLNAI 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 7 number of extra gaps= 0 total=11013 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1800534082.pdb -s /var/tmp/to_scwrl_1800534082.seq -o /var/tmp/from_scwrl_1800534082.pdb > /var/tmp/scwrl_1800534082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800534082.pdb Number of alignments=1373 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)D173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)S143 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)L144 Warning: unaligning (T0506)S175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)G176 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)A177 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)K195 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 178 :EELMAAAESEATRLNAI 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 6 number of extra gaps= 0 total=11019 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1666545325.pdb -s /var/tmp/to_scwrl_1666545325.seq -o /var/tmp/from_scwrl_1666545325.pdb > /var/tmp/scwrl_1666545325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1666545325.pdb Number of alignments=1374 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)D173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)S143 Warning: unaligning (T0506)L174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)L144 Warning: unaligning (T0506)S175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)G176 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)A177 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)K195 because last residue in template chain is (2htiA)P165 T0506 15 :KIE 2htiA 11 :CKD T0506 27 :VRVARDVLHTSRTAALATLD 2htiA 14 :EKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 178 :EELMAAAESEATRLNAI 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 7 number of extra gaps= 0 total=11026 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_376753279.pdb -s /var/tmp/to_scwrl_376753279.seq -o /var/tmp/from_scwrl_376753279.pdb > /var/tmp/scwrl_376753279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_376753279.pdb Number of alignments=1375 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)T166 because last residue in template chain is (2htiA)P165 T0506 21 :GAP 2htiA 11 :CKD T0506 27 :VRVARDVLHTSRTAALATLD 2htiA 14 :EKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT T0506 161 :NASNI 2htiA 160 :AKVNE Number of specific fragments extracted= 8 number of extra gaps= 1 total=11034 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_753184852.pdb -s /var/tmp/to_scwrl_753184852.seq -o /var/tmp/from_scwrl_753184852.pdb > /var/tmp/scwrl_753184852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753184852.pdb Number of alignments=1376 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)R211 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)D229 because last residue in template chain is (2htiA)P165 T0506 15 :KIE 2htiA 11 :CKD T0506 27 :VRVARDVLHTSRTAALATLD 2htiA 14 :EKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPDGT 2htiA 34 :NDQPYVIPLNFVWHNHAI T0506 68 :FFFAAGLTLHARNMETDARISVTLAPF 2htiA 52 :YFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 212 :WKITSIDPDGIDLASAS 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 7 number of extra gaps= 1 total=11041 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_94657119.pdb -s /var/tmp/to_scwrl_94657119.seq -o /var/tmp/from_scwrl_94657119.pdb > /var/tmp/scwrl_94657119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94657119.pdb Number of alignments=1377 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)R211 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)D229 because last residue in template chain is (2htiA)P165 T0506 21 :GA 2htiA 11 :CK T0506 26 :AVRVARDVLHTSRTAALATLD 2htiA 13 :DEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 212 :WKITSIDPDGIDLASAS 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 7 number of extra gaps= 1 total=11048 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2011855722.pdb -s /var/tmp/to_scwrl_2011855722.seq -o /var/tmp/from_scwrl_2011855722.pdb > /var/tmp/scwrl_2011855722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011855722.pdb Number of alignments=1378 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)R211 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)D229 because last residue in template chain is (2htiA)P165 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2htiA 11 :CKDEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 212 :WKITSIDPDGIDLASAS 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 6 number of extra gaps= 1 total=11054 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1788395290.pdb -s /var/tmp/to_scwrl_1788395290.seq -o /var/tmp/from_scwrl_1788395290.pdb > /var/tmp/scwrl_1788395290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1788395290.pdb Number of alignments=1379 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)K132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)T209 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)G210 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)R211 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)D229 because last residue in template chain is (2htiA)P165 T0506 15 :KIEPSAG 2htiA 11 :CKDEKKI T0506 31 :RDVLHTSRTAALATLD 2htiA 18 :TEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPD 2htiA 94 :YMSVIIFGTIEPVSAI T0506 118 :EVPLAIARYIARYP 2htiA 111 :EGTEAMQQMLDKYV T0506 212 :WKITSIDPDGIDLASAS 2htiA 148 :TAIYKISCRERTAKVNE Number of specific fragments extracted= 7 number of extra gaps= 1 total=11061 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1353363364.pdb -s /var/tmp/to_scwrl_1353363364.seq -o /var/tmp/from_scwrl_1353363364.pdb > /var/tmp/scwrl_1353363364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353363364.pdb Number of alignments=1380 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)T166 because last residue in template chain is (2htiA)P165 T0506 21 :GAPFEAVRV 2htiA 11 :CKDEKKITE T0506 33 :VLHTSRTAALATLD 2htiA 20 :FLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 112 :GTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT T0506 161 :NASNI 2htiA 160 :AKVNE Number of specific fragments extracted= 8 number of extra gaps= 1 total=11069 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1194714682.pdb -s /var/tmp/to_scwrl_1194714682.seq -o /var/tmp/from_scwrl_1194714682.pdb > /var/tmp/scwrl_1194714682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1194714682.pdb Number of alignments=1381 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)T166 because last residue in template chain is (2htiA)P165 T0506 21 :GAPFEAVR 2htiA 11 :CKDEKKIT T0506 32 :DVLHTSRTAALATLD 2htiA 19 :EFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPD 2htiA 34 :NDQPYVIPLNFVWHNH T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 50 :AIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPD 2htiA 94 :YMSVIIFGTIEPVSAI T0506 118 :EVPLAIARYIARY 2htiA 111 :EGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT T0506 161 :NASNI 2htiA 160 :AKVNE Number of specific fragments extracted= 8 number of extra gaps= 1 total=11077 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_794555046.pdb -s /var/tmp/to_scwrl_794555046.seq -o /var/tmp/from_scwrl_794555046.pdb > /var/tmp/scwrl_794555046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794555046.pdb Number of alignments=1382 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)T166 because last residue in template chain is (2htiA)P165 T0506 21 :GA 2htiA 11 :CK T0506 26 :AVRVARDVLHTSRTAALATLD 2htiA 13 :DEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT T0506 161 :NASNI 2htiA 160 :AKVNE Number of specific fragments extracted= 8 number of extra gaps= 1 total=11085 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_323774222.pdb -s /var/tmp/to_scwrl_323774222.seq -o /var/tmp/from_scwrl_323774222.pdb > /var/tmp/scwrl_323774222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323774222.pdb Number of alignments=1383 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 Warning: unaligning (T0506)T166 because last residue in template chain is (2htiA)P165 T0506 21 :GA 2htiA 11 :CK T0506 26 :AVRVARDVLHTSRTAALATLD 2htiA 13 :DEKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 142 :TRLYRLRTEGV 2htiA 148 :TAIYKISCRER T0506 160 :RNASNI 2htiA 159 :TAKVNE Number of specific fragments extracted= 8 number of extra gaps= 1 total=11093 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_844488465.pdb -s /var/tmp/to_scwrl_844488465.seq -o /var/tmp/from_scwrl_844488465.pdb > /var/tmp/scwrl_844488465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_844488465.pdb Number of alignments=1384 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 T0506 33 :VLHTSRTAALATLD 2htiA 20 :FLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 112 :GTEAMQQMLDKY Number of specific fragments extracted= 5 number of extra gaps= 0 total=11098 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1450975438.pdb -s /var/tmp/to_scwrl_1450975438.seq -o /var/tmp/from_scwrl_1450975438.pdb > /var/tmp/scwrl_1450975438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450975438.pdb Number of alignments=1385 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 33 :VLHTSRTAALATLD 2htiA 20 :FLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=11103 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1294282653.pdb -s /var/tmp/to_scwrl_1294282653.seq -o /var/tmp/from_scwrl_1294282653.pdb > /var/tmp/scwrl_1294282653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1294282653.pdb Number of alignments=1386 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 33 :VLHTSRTAALATLD 2htiA 20 :FLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=11108 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1716365347.pdb -s /var/tmp/to_scwrl_1716365347.seq -o /var/tmp/from_scwrl_1716365347.pdb > /var/tmp/scwrl_1716365347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1716365347.pdb Number of alignments=1387 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 30 :ARDVLHTSRTAALATLD 2htiA 17 :ITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=11113 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1176323909.pdb -s /var/tmp/to_scwrl_1176323909.seq -o /var/tmp/from_scwrl_1176323909.pdb > /var/tmp/scwrl_1176323909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1176323909.pdb Number of alignments=1388 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 30 :ARDVLHTSRTAALATLD 2htiA 17 :ITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPDGT 2htiA 34 :NDQPYVIPLNFVWHNHAI T0506 68 :FFFAAGLTLHARNMETDARISVTLAPF 2htiA 52 :YFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=11118 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_912393141.pdb -s /var/tmp/to_scwrl_912393141.seq -o /var/tmp/from_scwrl_912393141.pdb > /var/tmp/scwrl_912393141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912393141.pdb Number of alignments=1389 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 28 :RVARDVLHTSRTAALATLD 2htiA 15 :KKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=11123 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_679940580.pdb -s /var/tmp/to_scwrl_679940580.seq -o /var/tmp/from_scwrl_679940580.pdb > /var/tmp/scwrl_679940580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_679940580.pdb Number of alignments=1390 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 28 :RVARDVLHTSRTAALATLD 2htiA 15 :KKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=11128 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1130640500.pdb -s /var/tmp/to_scwrl_1130640500.seq -o /var/tmp/from_scwrl_1130640500.pdb > /var/tmp/scwrl_1130640500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130640500.pdb Number of alignments=1391 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 T0506 33 :VLHTSRTAALATLD 2htiA 20 :FLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPD 2htiA 94 :YMSVIIFGTIEPVSAI T0506 118 :EVPLAIARYIARY 2htiA 111 :EGTEAMQQMLDKY Number of specific fragments extracted= 5 number of extra gaps= 0 total=11133 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_297088670.pdb -s /var/tmp/to_scwrl_297088670.seq -o /var/tmp/from_scwrl_297088670.pdb > /var/tmp/scwrl_297088670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_297088670.pdb Number of alignments=1392 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 21 :GAPFEAVRV 2htiA 11 :CKDEKKITE T0506 33 :VLHTSRTAALATLD 2htiA 20 :FLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 112 :GTEAMQQMLDKY T0506 142 :TRLYRLRTEGV 2htiA 148 :TAIYKISCRER Number of specific fragments extracted= 7 number of extra gaps= 1 total=11140 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_716448403.pdb -s /var/tmp/to_scwrl_716448403.seq -o /var/tmp/from_scwrl_716448403.pdb > /var/tmp/scwrl_716448403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_716448403.pdb Number of alignments=1393 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2htiA)E10 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 21 :GAPFEAVR 2htiA 11 :CKDEKKIT T0506 32 :DVLHTSRTAALATLD 2htiA 19 :EFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGIEPD 2htiA 34 :NDQPYVIPLNFVWHNH T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 50 :AIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPD 2htiA 94 :YMSVIIFGTIEPVSAI T0506 118 :EVPLAIARYIARY 2htiA 111 :EGTEAMQQMLDKY T0506 142 :TRLYRLRTEGVQ 2htiA 148 :TAIYKISCRERT T0506 161 :NAS 2htiA 160 :AKV Number of specific fragments extracted= 8 number of extra gaps= 1 total=11148 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1388252779.pdb -s /var/tmp/to_scwrl_1388252779.seq -o /var/tmp/from_scwrl_1388252779.pdb > /var/tmp/scwrl_1388252779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1388252779.pdb Number of alignments=1394 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)G145 Warning: unaligning (T0506)P140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2htiA)S146 Warning: unaligning (T0506)D141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE at template residue (2htiA)R147 T0506 28 :RVARDVLHTSRTAALATLD 2htiA 15 :KKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV T0506 142 :TRLYRLRTEGV 2htiA 148 :TAIYKISCRER Number of specific fragments extracted= 6 number of extra gaps= 1 total=11154 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_501024647.pdb -s /var/tmp/to_scwrl_501024647.seq -o /var/tmp/from_scwrl_501024647.pdb > /var/tmp/scwrl_501024647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501024647.pdb Number of alignments=1395 # 2htiA read from all-align.a2m # found chain 2htiA in template set Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)A93 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2htiA)A93 Warning: unaligning (T0506)P131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2htiA)S143 T0506 27 :VRVARDVLHTSRTAALATLD 2htiA 14 :EKKITEFLNKARTGFLGLST T0506 49 :SGYPYTTATNIGI 2htiA 34 :NDQPYVIPLNFVW T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPF 2htiA 47 :HNHAIYFHGASEGRKIKMIEANPEVCFTICED T0506 102 :LPRLTLVGRADRIGPDE 2htiA 94 :YMSVIIFGTIEPVSAIE T0506 119 :VPLAIARYIARY 2htiA 113 :TEAMQQMLDKYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=11159 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_78073569.pdb -s /var/tmp/to_scwrl_78073569.seq -o /var/tmp/from_scwrl_78073569.pdb > /var/tmp/scwrl_78073569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78073569.pdb Number of alignments=1396 2i02A expands to /projects/compbio/data/pdb/2i02.pdb.gz 2i02A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 260, because occupancy 0.500 <= existing 0.500 in 2i02A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 2i02A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 2i02A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 2i02A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 290, because occupancy 0.370 <= existing 0.380 in 2i02A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 469, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 473, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 475, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 477, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 479, because occupancy 0.500 <= existing 0.500 in 2i02A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2i02A Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2i02A # 2i02A read from all-align.a2m # adding 2i02A to template set # found chain 2i02A in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 12 :RGTKIEP 2i02A 7 :RTQEIQK T0506 30 :ARDVLHTSRTAALATLD 2i02A 14 :LHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRY T0506 105 :LTLVGRADRIG 2i02A 85 :VSISGTSQLVK T0506 116 :PDEVPLAIARYIARYP 2i02A 97 :RNKMRELWKPELQTWF T0506 240 :ETLKQFEKALAQLLK 2i02A 113 :PKGLDEPDIALLKVN Number of specific fragments extracted= 7 number of extra gaps= 0 total=11166 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1868717743.pdb -s /var/tmp/to_scwrl_1868717743.seq -o /var/tmp/from_scwrl_1868717743.pdb > /var/tmp/scwrl_1868717743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1868717743.pdb Number of alignments=1397 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 26 :AVRVARDVLHTSRTAALATLD 2i02A 10 :EIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRY T0506 105 :LTLVGRADRIG 2i02A 85 :VSISGTSQLVK T0506 116 :PDEVPLAIARYIARYP 2i02A 97 :RNKMRELWKPELQTWF T0506 219 :PDGIDLA 2i02A 113 :PKGLDEP T0506 229 :DLARLW 2i02A 120 :DIALLK T0506 235 :FAERVETLKQFEKALAQ 2i02A 127 :NINQVNYWDSTSSFKPQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=11174 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_84316797.pdb -s /var/tmp/to_scwrl_84316797.seq -o /var/tmp/from_scwrl_84316797.pdb > /var/tmp/scwrl_84316797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_84316797.pdb Number of alignments=1398 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 30 :ARDVLHTSRTAALATLD 2i02A 14 :LHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRY T0506 105 :LTLVGRADRIG 2i02A 85 :VSISGTSQLVK T0506 116 :PDEVPLAIARYIARYP 2i02A 97 :RNKMRELWKPELQTWF T0506 134 :KLYLSLPDTRLYRLRTEGVQINGG 2i02A 113 :PKGLDEPDIALLKVNINQVNYWDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=11180 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_463829396.pdb -s /var/tmp/to_scwrl_463829396.seq -o /var/tmp/from_scwrl_463829396.pdb > /var/tmp/scwrl_463829396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463829396.pdb Number of alignments=1399 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 30 :ARDVLHTSRTAALATLD 2i02A 14 :LHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGDA 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRY T0506 105 :LTLVGRADRIG 2i02A 85 :VSISGTSQLVK T0506 116 :PDEVPLAIARYIARYP 2i02A 97 :RNKMRELWKPELQTWF T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGP 2i02A 113 :PKGLDEPDIALLKVNINQVNYWDST Number of specific fragments extracted= 6 number of extra gaps= 0 total=11186 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_320998372.pdb -s /var/tmp/to_scwrl_320998372.seq -o /var/tmp/from_scwrl_320998372.pdb > /var/tmp/scwrl_320998372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320998372.pdb Number of alignments=1400 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)M1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2i02A)D6 Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)R238 because last residue in template chain is (2i02A)F147 T0506 3 :DV 2i02A 7 :RT T0506 25 :EAVRVARDVLHTSRTAALATLDP 2i02A 9 :QEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNI 2i02A 32 :DGSLHSYPMSK T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQR T0506 104 :RLTLVGRADRIGPDE 2i02A 84 :YVSISGTSQLVKDRN T0506 122 :AIARYIARYPKAKL 2i02A 99 :KMRELWKPELQTWF T0506 204 :LAGAKTGRWKITSIDPDGIDLASASDLARLWFAE 2i02A 113 :PKGLDEPDIALLKVNINQVNYWDSTSSFKPQTIS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11193 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1282029280.pdb -s /var/tmp/to_scwrl_1282029280.seq -o /var/tmp/from_scwrl_1282029280.pdb > /var/tmp/scwrl_1282029280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282029280.pdb Number of alignments=1401 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)M1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2i02A)D6 Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 3 :D 2i02A 7 :R T0506 25 :EAVRVARDVLHTSRTAALATLDP 2i02A 9 :QEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNI 2i02A 32 :DGSLHSYPMSK T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQR T0506 104 :RLTLVGRADRIGPDEVPLAI 2i02A 84 :YVSISGTSQLVKDRNKMREL T0506 124 :ARY 2i02A 110 :TWF T0506 205 :AGAKTGRWKITSIDPDGIDLASASDLARLWFAE 2i02A 114 :KGLDEPDIALLKVNINQVNYWDSTSSFKPQTIS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11200 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1058336909.pdb -s /var/tmp/to_scwrl_1058336909.seq -o /var/tmp/from_scwrl_1058336909.pdb > /var/tmp/scwrl_1058336909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058336909.pdb Number of alignments=1402 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2i02A 9 :QEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNI 2i02A 32 :DGSLHSYPMSK T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQR T0506 104 :RLTLVGRADRIGPDEV 2i02A 84 :YVSISGTSQLVKDRNK Number of specific fragments extracted= 4 number of extra gaps= 0 total=11204 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2124937281.pdb -s /var/tmp/to_scwrl_2124937281.seq -o /var/tmp/from_scwrl_2124937281.pdb > /var/tmp/scwrl_2124937281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124937281.pdb Number of alignments=1403 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 30 :ARDVLHTSRTAALATLDP 2i02A 14 :LHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNI 2i02A 32 :DGSLHSYPMSK T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKGD 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQR T0506 104 :RLTLVGRADRIGPDEV 2i02A 84 :YVSISGTSQLVKDRNK Number of specific fragments extracted= 4 number of extra gaps= 0 total=11208 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_935079717.pdb -s /var/tmp/to_scwrl_935079717.seq -o /var/tmp/from_scwrl_935079717.pdb > /var/tmp/scwrl_935079717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_935079717.pdb Number of alignments=1404 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 46 :DPVSGYPYTTATNI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTL 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSF Number of specific fragments extracted= 2 number of extra gaps= 0 total=11210 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_577398587.pdb -s /var/tmp/to_scwrl_577398587.seq -o /var/tmp/from_scwrl_577398587.pdb > /var/tmp/scwrl_577398587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577398587.pdb Number of alignments=1405 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 51 :YPYTTAT 2i02A 38 :YPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTL 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSF Number of specific fragments extracted= 2 number of extra gaps= 0 total=11212 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_354206913.pdb -s /var/tmp/to_scwrl_354206913.seq -o /var/tmp/from_scwrl_354206913.pdb > /var/tmp/scwrl_354206913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_354206913.pdb Number of alignments=1406 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)A182 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIARYIARY 2i02A 98 :NKMRELWKPELQTW T0506 131 :PKA 2i02A 113 :PKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSS T0506 175 :SGAEELM 2i02A 140 :FKPQTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11220 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1688264568.pdb -s /var/tmp/to_scwrl_1688264568.seq -o /var/tmp/from_scwrl_1688264568.pdb > /var/tmp/scwrl_1688264568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688264568.pdb Number of alignments=1407 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVARDV 2i02A 7 :RTQEIQKL T0506 34 :LHTSRTAALATLD 2i02A 18 :IKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIARYIARY 2i02A 98 :NKMRELWKPELQTW T0506 131 :PKA 2i02A 113 :PKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSS T0506 161 :NASNIT 2i02A 141 :KPQTIS Number of specific fragments extracted= 9 number of extra gaps= 0 total=11229 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_672055706.pdb -s /var/tmp/to_scwrl_672055706.seq -o /var/tmp/from_scwrl_672055706.pdb > /var/tmp/scwrl_672055706.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_672055706.pdb Number of alignments=1408 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVA 2i02A 7 :RTQEI T0506 31 :RDVLHTSRTAALATLD 2i02A 15 :HELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 125 :RYIARYPKA 2i02A 107 :ELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSS T0506 161 :NASNIT 2i02A 141 :KPQTIS Number of specific fragments extracted= 9 number of extra gaps= 0 total=11238 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_218578988.pdb -s /var/tmp/to_scwrl_218578988.seq -o /var/tmp/from_scwrl_218578988.pdb > /var/tmp/scwrl_218578988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_218578988.pdb Number of alignments=1409 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVA 2i02A 7 :RTQEI T0506 31 :RDVLHTSRTAALATLD 2i02A 15 :HELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEV 2i02A 98 :NKM T0506 127 :IARY 2i02A 101 :RELW T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQING 2i02A 119 :PDIALLKVNINQVNYWD T0506 157 :GPA 2i02A 139 :SFK T0506 162 :ASNIT 2i02A 142 :PQTIS Number of specific fragments extracted= 11 number of extra gaps= 0 total=11249 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1329176211.pdb -s /var/tmp/to_scwrl_1329176211.seq -o /var/tmp/from_scwrl_1329176211.pdb > /var/tmp/scwrl_1329176211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329176211.pdb Number of alignments=1410 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVA 2i02A 7 :RTQEI T0506 31 :RDVLHTSRTAALATLD 2i02A 15 :HELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAI 2i02A 98 :NKMRELW T0506 124 :ARYIARYPKA 2i02A 106 :PELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSS T0506 161 :NASNIT 2i02A 141 :KPQTIS Number of specific fragments extracted= 9 number of extra gaps= 0 total=11258 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2025419070.pdb -s /var/tmp/to_scwrl_2025419070.seq -o /var/tmp/from_scwrl_2025419070.pdb > /var/tmp/scwrl_2025419070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025419070.pdb Number of alignments=1411 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVA 2i02A 7 :RTQEI T0506 31 :RDVLHTSRTAALATLD 2i02A 15 :HELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQING 2i02A 119 :PDIALLKVNINQVNYWD T0506 157 :GPAR 2i02A 139 :SFKP T0506 231 :ARLW 2i02A 143 :QTIS Number of specific fragments extracted= 10 number of extra gaps= 0 total=11268 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1413293670.pdb -s /var/tmp/to_scwrl_1413293670.seq -o /var/tmp/from_scwrl_1413293670.pdb > /var/tmp/scwrl_1413293670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1413293670.pdb Number of alignments=1412 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVA 2i02A 7 :RTQEI T0506 31 :RDVLHTSRTAALATLD 2i02A 15 :HELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIARYIARY 2i02A 98 :NKMRELWKPELQTW T0506 131 :PKA 2i02A 113 :PKG T0506 137 :LSLPDTRLYRLRTEGVQING 2i02A 116 :LDEPDIALLKVNINQVNYWD T0506 157 :GPARNA 2i02A 139 :SFKPQT T0506 165 :IT 2i02A 145 :IS Number of specific fragments extracted= 10 number of extra gaps= 0 total=11278 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2123731257.pdb -s /var/tmp/to_scwrl_2123731257.seq -o /var/tmp/from_scwrl_2123731257.pdb > /var/tmp/scwrl_2123731257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2123731257.pdb Number of alignments=1413 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 125 :RYIARYPKA 2i02A 107 :ELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSS T0506 161 :NASNIT 2i02A 141 :KPQTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11286 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_201709646.pdb -s /var/tmp/to_scwrl_201709646.seq -o /var/tmp/from_scwrl_201709646.pdb > /var/tmp/scwrl_201709646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_201709646.pdb Number of alignments=1414 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i02A 119 :PDIALLKVNINQVNYWDSTSS T0506 161 :NASNIT 2i02A 141 :KPQTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11294 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_110298488.pdb -s /var/tmp/to_scwrl_110298488.seq -o /var/tmp/from_scwrl_110298488.pdb > /var/tmp/scwrl_110298488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110298488.pdb Number of alignments=1415 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :D 2i02A 98 :N T0506 125 :RYIARY 2i02A 99 :KMRELW T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQING 2i02A 119 :PDIALLKVNINQVNYWD T0506 157 :GPA 2i02A 139 :SFK T0506 162 :ASNIT 2i02A 142 :PQTIS Number of specific fragments extracted= 10 number of extra gaps= 0 total=11304 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1427223048.pdb -s /var/tmp/to_scwrl_1427223048.seq -o /var/tmp/from_scwrl_1427223048.pdb > /var/tmp/scwrl_1427223048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1427223048.pdb Number of alignments=1416 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)P167 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVA 2i02A 7 :RTQEI T0506 31 :RDVLHTSRTAALATLD 2i02A 15 :HELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQING 2i02A 119 :PDIALLKVNINQVNYWD T0506 157 :GPA 2i02A 139 :SFK T0506 162 :ASNIT 2i02A 142 :PQTIS Number of specific fragments extracted= 10 number of extra gaps= 0 total=11314 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1495992299.pdb -s /var/tmp/to_scwrl_1495992299.seq -o /var/tmp/from_scwrl_1495992299.pdb > /var/tmp/scwrl_1495992299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495992299.pdb Number of alignments=1417 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)F24 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 26 :AVRVA 2i02A 7 :RTQEI T0506 31 :RDVLHTSRTAALATLD 2i02A 15 :HELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :D 2i02A 98 :N T0506 125 :RYIARY 2i02A 99 :KMRELW T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i02A 119 :PDIALLKVNINQVNYWDSTSS T0506 228 :SDLARLW 2i02A 140 :FKPQTIS Number of specific fragments extracted= 10 number of extra gaps= 0 total=11324 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1826663835.pdb -s /var/tmp/to_scwrl_1826663835.seq -o /var/tmp/from_scwrl_1826663835.pdb > /var/tmp/scwrl_1826663835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826663835.pdb Number of alignments=1418 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIARYIARY 2i02A 98 :NKMRELWKPELQTW T0506 131 :PKA 2i02A 113 :PKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11331 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_456063312.pdb -s /var/tmp/to_scwrl_456063312.seq -o /var/tmp/from_scwrl_456063312.pdb > /var/tmp/scwrl_456063312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456063312.pdb Number of alignments=1419 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 27 :VRVARDVLHTSRTAALATLD 2i02A 11 :IQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIARYIARY 2i02A 98 :NKMRELWKPELQTW T0506 131 :PKA 2i02A 113 :PKG T0506 137 :LSLPDTRLYRLRTEGVQING 2i02A 116 :LDEPDIALLKVNINQVNYWD Number of specific fragments extracted= 7 number of extra gaps= 0 total=11338 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_260901793.pdb -s /var/tmp/to_scwrl_260901793.seq -o /var/tmp/from_scwrl_260901793.pdb > /var/tmp/scwrl_260901793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_260901793.pdb Number of alignments=1420 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 125 :RYIARYPKA 2i02A 107 :ELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2i02A 116 :LDEPDIALLKVNINQVNYWDSTS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11345 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_359120768.pdb -s /var/tmp/to_scwrl_359120768.seq -o /var/tmp/from_scwrl_359120768.pdb > /var/tmp/scwrl_359120768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_359120768.pdb Number of alignments=1421 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEV 2i02A 98 :NKM T0506 127 :IARY 2i02A 101 :RELW T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQINGG 2i02A 119 :PDIALLKVNINQVNYWDS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11353 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1586703812.pdb -s /var/tmp/to_scwrl_1586703812.seq -o /var/tmp/from_scwrl_1586703812.pdb > /var/tmp/scwrl_1586703812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1586703812.pdb Number of alignments=1422 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAI 2i02A 98 :NKMRELW T0506 124 :ARYIARYPKA 2i02A 106 :PELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGG 2i02A 116 :LDEPDIALLKVNINQVNYWDS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11360 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_557990463.pdb -s /var/tmp/to_scwrl_557990463.seq -o /var/tmp/from_scwrl_557990463.pdb > /var/tmp/scwrl_557990463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557990463.pdb Number of alignments=1423 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 25 :EAVRVARDVLHTSRTAALATLD 2i02A 9 :QEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQINGGPA 2i02A 119 :PDIALLKVNINQVNYWDSTS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11367 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1075569170.pdb -s /var/tmp/to_scwrl_1075569170.seq -o /var/tmp/from_scwrl_1075569170.pdb > /var/tmp/scwrl_1075569170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075569170.pdb Number of alignments=1424 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIARYIARY 2i02A 98 :NKMRELWKPELQTW T0506 131 :PKA 2i02A 113 :PKG T0506 137 :LSLPDTRLYRLRTEGVQINGG 2i02A 116 :LDEPDIALLKVNINQVNYWDS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11374 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_827472945.pdb -s /var/tmp/to_scwrl_827472945.seq -o /var/tmp/from_scwrl_827472945.pdb > /var/tmp/scwrl_827472945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_827472945.pdb Number of alignments=1425 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 125 :RYIARYPKA 2i02A 107 :ELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPA 2i02A 116 :LDEPDIALLKVNINQVNYWDSTS Number of specific fragments extracted= 7 number of extra gaps= 1 total=11381 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1059015110.pdb -s /var/tmp/to_scwrl_1059015110.seq -o /var/tmp/from_scwrl_1059015110.pdb > /var/tmp/scwrl_1059015110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1059015110.pdb Number of alignments=1426 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i02A 119 :PDIALLKVNINQVNYWDSTSS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11388 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1153642739.pdb -s /var/tmp/to_scwrl_1153642739.seq -o /var/tmp/from_scwrl_1153642739.pdb > /var/tmp/scwrl_1153642739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153642739.pdb Number of alignments=1427 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIG 2i02A 31 :DDGSLHSYPMSKS T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :D 2i02A 98 :N T0506 125 :RYIARY 2i02A 99 :KMRELW T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQING 2i02A 119 :PDIALLKVNINQVNYWD T0506 157 :GPA 2i02A 139 :SFK T0506 162 :ASNI 2i02A 142 :PQTI Number of specific fragments extracted= 10 number of extra gaps= 0 total=11398 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_548707041.pdb -s /var/tmp/to_scwrl_548707041.seq -o /var/tmp/from_scwrl_548707041.pdb > /var/tmp/scwrl_548707041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_548707041.pdb Number of alignments=1428 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :DEVPLAIA 2i02A 98 :NKMRELWK T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQINGGPA 2i02A 119 :PDIALLKVNINQVNYWDSTS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11405 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1143331906.pdb -s /var/tmp/to_scwrl_1143331906.seq -o /var/tmp/from_scwrl_1143331906.pdb > /var/tmp/scwrl_1143331906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1143331906.pdb Number of alignments=1429 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLD 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVD T0506 48 :VSGYPYTTATNIGI 2i02A 31 :DDGSLHSYPMSKSG T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 52 :LWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGP 2i02A 83 :RYVSISGTSQLVKD T0506 117 :D 2i02A 98 :N T0506 125 :RYIARY 2i02A 99 :KMRELW T0506 131 :PKAKLYLSL 2i02A 106 :PELQTWFPK T0506 140 :PDTRLYRLRTEGVQINGGPA 2i02A 119 :PDIALLKVNINQVNYWDSTS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11413 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1617472136.pdb -s /var/tmp/to_scwrl_1617472136.seq -o /var/tmp/from_scwrl_1617472136.pdb > /var/tmp/scwrl_1617472136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617472136.pdb Number of alignments=1430 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQING 2i02A 116 :LDEPDIALLKVNINQVNYWD T0506 168 :ADLRTDLSGAE 2i02A 136 :STSSFKPQTIS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11420 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_869705413.pdb -s /var/tmp/to_scwrl_869705413.seq -o /var/tmp/from_scwrl_869705413.pdb > /var/tmp/scwrl_869705413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_869705413.pdb Number of alignments=1431 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)R190 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQIN 2i02A 116 :LDEPDIALLKVNINQVNYW T0506 178 :EELMAAAESEAT 2i02A 135 :DSTSSFKPQTIS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11427 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_277877541.pdb -s /var/tmp/to_scwrl_277877541.seq -o /var/tmp/from_scwrl_277877541.pdb > /var/tmp/scwrl_277877541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277877541.pdb Number of alignments=1432 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F245 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPARN 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSSF T0506 173 :DL 2i02A 141 :KP T0506 186 :SEAT 2i02A 143 :QTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11435 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_528325398.pdb -s /var/tmp/to_scwrl_528325398.seq -o /var/tmp/from_scwrl_528325398.pdb > /var/tmp/scwrl_528325398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_528325398.pdb Number of alignments=1433 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)V239 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDEVPLAI 2i02A 83 :RYVSISGTSQLVKDRNKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQINGGPARNASNITP 2i02A 118 :EPDIALLKVNINQVNYWDSTSSFKPQTIS Number of specific fragments extracted= 6 number of extra gaps= 0 total=11441 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_847159047.pdb -s /var/tmp/to_scwrl_847159047.seq -o /var/tmp/from_scwrl_847159047.pdb > /var/tmp/scwrl_847159047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847159047.pdb Number of alignments=1434 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)L174 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLA 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFS T0506 98 :DALTLPRLTLVGRADRIGPDE 2i02A 78 :SPEQQRYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNITP 2i02A 116 :LDEPDIALLKVNINQVNYWDSTSSFKPQTIS Number of specific fragments extracted= 6 number of extra gaps= 0 total=11447 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1212957257.pdb -s /var/tmp/to_scwrl_1212957257.seq -o /var/tmp/from_scwrl_1212957257.pdb > /var/tmp/scwrl_1212957257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1212957257.pdb Number of alignments=1435 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDEVPLAI 2i02A 83 :RYVSISGTSQLVKDRNKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQINGGPAR 2i02A 118 :EPDIALLKVNINQVNYWDSTSS T0506 172 :TDL 2i02A 140 :FKP T0506 231 :ARLW 2i02A 143 :QTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11455 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1105723984.pdb -s /var/tmp/to_scwrl_1105723984.seq -o /var/tmp/from_scwrl_1105723984.pdb > /var/tmp/scwrl_1105723984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1105723984.pdb Number of alignments=1436 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQINGGP 2i02A 116 :LDEPDIALLKVNINQVNYWDST T0506 170 :LRTDL 2i02A 138 :SSFKP T0506 231 :ARLW 2i02A 143 :QTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11463 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1201365959.pdb -s /var/tmp/to_scwrl_1201365959.seq -o /var/tmp/from_scwrl_1201365959.pdb > /var/tmp/scwrl_1201365959.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201365959.pdb Number of alignments=1437 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)E179 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLA 2i02A 101 :RELW T0506 130 :YPKAKLYLS 2i02A 105 :KPELQTWFP T0506 139 :LPDTRLYRLRTEGVQINGG 2i02A 118 :EPDIALLKVNINQVNYWDS T0506 166 :TPA 2i02A 137 :TSS T0506 172 :TDLSGAE 2i02A 140 :FKPQTIS Number of specific fragments extracted= 9 number of extra gaps= 0 total=11472 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_753738179.pdb -s /var/tmp/to_scwrl_753738179.seq -o /var/tmp/from_scwrl_753738179.pdb > /var/tmp/scwrl_753738179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753738179.pdb Number of alignments=1438 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)G65 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 66 :TPFFFAA 2i02A 50 :ATLWFFT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i02A 58 :AGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLA 2i02A 100 :MREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQINGG 2i02A 118 :EPDIALLKVNINQVNYWDS T0506 167 :PA 2i02A 137 :TS T0506 227 :ASDLARLW 2i02A 139 :SFKPQTIS Number of specific fragments extracted= 10 number of extra gaps= 0 total=11482 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1777779691.pdb -s /var/tmp/to_scwrl_1777779691.seq -o /var/tmp/from_scwrl_1777779691.pdb > /var/tmp/scwrl_1777779691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1777779691.pdb Number of alignments=1439 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPD 2i02A 83 :RYVSISGTSQLVKDR T0506 120 :PLAIAR 2i02A 98 :NKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQINGGP 2i02A 118 :EPDIALLKVNINQVNYWDST T0506 226 :SASDLARLW 2i02A 138 :SSFKPQTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11490 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1419944948.pdb -s /var/tmp/to_scwrl_1419944948.seq -o /var/tmp/from_scwrl_1419944948.pdb > /var/tmp/scwrl_1419944948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419944948.pdb Number of alignments=1440 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)G65 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 66 :TPFFFAA 2i02A 50 :ATLWFFT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i02A 58 :AGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDEVPLAI 2i02A 83 :RYVSISGTSQLVKDRNKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQINGGPA 2i02A 118 :EPDIALLKVNINQVNYWDSTS T0506 227 :ASDLARLW 2i02A 139 :SFKPQTIS Number of specific fragments extracted= 8 number of extra gaps= 0 total=11498 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2082914390.pdb -s /var/tmp/to_scwrl_2082914390.seq -o /var/tmp/from_scwrl_2082914390.pdb > /var/tmp/scwrl_2082914390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2082914390.pdb Number of alignments=1441 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 Warning: unaligning (T0506)F235 because last residue in template chain is (2i02A)F147 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGK 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQ T0506 102 :LPRLTLVGRADRIGPDEVPL 2i02A 82 :QRYVSISGTSQLVKDRNKMR T0506 127 :IARYPKAKLYLS 2i02A 102 :ELWKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQINGGPA 2i02A 118 :EPDIALLKVNINQVNYWDSTS T0506 227 :ASDLARLW 2i02A 139 :SFKPQTIS Number of specific fragments extracted= 7 number of extra gaps= 0 total=11505 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1655715114.pdb -s /var/tmp/to_scwrl_1655715114.seq -o /var/tmp/from_scwrl_1655715114.pdb > /var/tmp/scwrl_1655715114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1655715114.pdb Number of alignments=1442 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQI 2i02A 116 :LDEPDIALLKVNINQVNY Number of specific fragments extracted= 6 number of extra gaps= 0 total=11511 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_685754972.pdb -s /var/tmp/to_scwrl_685754972.seq -o /var/tmp/from_scwrl_685754972.pdb > /var/tmp/scwrl_685754972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_685754972.pdb Number of alignments=1443 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 33 :VLHTSRTAALATLDP 2i02A 17 :LIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQING 2i02A 116 :LDEPDIALLKVNINQVNYWD Number of specific fragments extracted= 6 number of extra gaps= 0 total=11517 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2059162000.pdb -s /var/tmp/to_scwrl_2059162000.seq -o /var/tmp/from_scwrl_2059162000.pdb > /var/tmp/scwrl_2059162000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2059162000.pdb Number of alignments=1444 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 28 :RVARDVLHTSRTAALATLDP 2i02A 12 :QKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQIN 2i02A 116 :LDEPDIALLKVNINQVNYW Number of specific fragments extracted= 6 number of extra gaps= 0 total=11523 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1857424760.pdb -s /var/tmp/to_scwrl_1857424760.seq -o /var/tmp/from_scwrl_1857424760.pdb > /var/tmp/scwrl_1857424760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857424760.pdb Number of alignments=1445 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDEVPLAI 2i02A 83 :RYVSISGTSQLVKDRNKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQING 2i02A 118 :EPDIALLKVNINQVNYWD Number of specific fragments extracted= 6 number of extra gaps= 0 total=11529 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_796053461.pdb -s /var/tmp/to_scwrl_796053461.seq -o /var/tmp/from_scwrl_796053461.pdb > /var/tmp/scwrl_796053461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796053461.pdb Number of alignments=1446 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLA 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFS T0506 98 :DALTLPRLTLVGRADRIGPDE 2i02A 78 :SPEQQRYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQING 2i02A 116 :LDEPDIALLKVNINQVNYWD Number of specific fragments extracted= 6 number of extra gaps= 0 total=11535 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1338901401.pdb -s /var/tmp/to_scwrl_1338901401.seq -o /var/tmp/from_scwrl_1338901401.pdb > /var/tmp/scwrl_1338901401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1338901401.pdb Number of alignments=1447 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDEVPLAI 2i02A 83 :RYVSISGTSQLVKDRNKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQING 2i02A 118 :EPDIALLKVNINQVNYWD Number of specific fragments extracted= 6 number of extra gaps= 0 total=11541 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1205933412.pdb -s /var/tmp/to_scwrl_1205933412.seq -o /var/tmp/from_scwrl_1205933412.pdb > /var/tmp/scwrl_1205933412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1205933412.pdb Number of alignments=1448 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLAIARYIARYPKA 2i02A 101 :RELWKPELQTWFPKG T0506 137 :LSLPDTRLYRLRTEGVQING 2i02A 116 :LDEPDIALLKVNINQVNYWD Number of specific fragments extracted= 6 number of extra gaps= 0 total=11547 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_475233649.pdb -s /var/tmp/to_scwrl_475233649.seq -o /var/tmp/from_scwrl_475233649.pdb > /var/tmp/scwrl_475233649.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475233649.pdb Number of alignments=1449 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2i02A 9 :QEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLA 2i02A 101 :RELW T0506 130 :YPKAKLYLS 2i02A 105 :KPELQTWFP T0506 139 :LPDTRLYRLRTEGVQIN 2i02A 118 :EPDIALLKVNINQVNYW Number of specific fragments extracted= 7 number of extra gaps= 0 total=11554 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1794964713.pdb -s /var/tmp/to_scwrl_1794964713.seq -o /var/tmp/from_scwrl_1794964713.pdb > /var/tmp/scwrl_1794964713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794964713.pdb Number of alignments=1450 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)G65 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 66 :TPFFFAA 2i02A 50 :ATLWFFT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i02A 58 :AGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDE 2i02A 83 :RYVSISGTSQLVKDRN T0506 119 :VPLA 2i02A 100 :MREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQING 2i02A 118 :EPDIALLKVNINQVNYWD Number of specific fragments extracted= 8 number of extra gaps= 1 total=11562 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1466835205.pdb -s /var/tmp/to_scwrl_1466835205.seq -o /var/tmp/from_scwrl_1466835205.pdb > /var/tmp/scwrl_1466835205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1466835205.pdb Number of alignments=1451 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i02A)T5 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2i02A)D6 Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 23 :PFEAVRVARDVLHTSRTAALATLDP 2i02A 7 :RTQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPD 2i02A 83 :RYVSISGTSQLVKDR T0506 120 :PLAIAR 2i02A 98 :NKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQING 2i02A 118 :EPDIALLKVNINQVNYWD Number of specific fragments extracted= 7 number of extra gaps= 0 total=11569 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_834354418.pdb -s /var/tmp/to_scwrl_834354418.seq -o /var/tmp/from_scwrl_834354418.pdb > /var/tmp/scwrl_834354418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_834354418.pdb Number of alignments=1452 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)G65 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 24 :FEAVRVARDVLHTSRTAALATLDP 2i02A 8 :TQEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 66 :TPFFFAA 2i02A 50 :ATLWFFT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i02A 58 :AGSHKVTEIEHHEQVNVSFSSPEQQ T0506 103 :PRLTLVGRADRIGPDEVPLAI 2i02A 83 :RYVSISGTSQLVKDRNKMREL T0506 129 :RYPKAKLYLS 2i02A 104 :WKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQING 2i02A 118 :EPDIALLKVNINQVNYWD Number of specific fragments extracted= 7 number of extra gaps= 0 total=11576 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1234184879.pdb -s /var/tmp/to_scwrl_1234184879.seq -o /var/tmp/from_scwrl_1234184879.pdb > /var/tmp/scwrl_1234184879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1234184879.pdb Number of alignments=1453 # 2i02A read from all-align.a2m # found chain 2i02A in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2i02A)E49 Warning: unaligning (T0506)D64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2i02A)E49 T0506 25 :EAVRVARDVLHTSRTAALATLDP 2i02A 9 :QEIQKLHELIKNIDYGMFTTVDD T0506 49 :SGYPYTTATNIGI 2i02A 32 :DGSLHSYPMSKSG T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGK 2i02A 50 :ATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQ T0506 102 :LPRLTLVGRADRIGPDEVPL 2i02A 82 :QRYVSISGTSQLVKDRNKMR T0506 127 :IARYPKAKLYLS 2i02A 102 :ELWKPELQTWFP T0506 139 :LPDTRLYRLRTEGVQING 2i02A 118 :EPDIALLKVNINQVNYWD Number of specific fragments extracted= 6 number of extra gaps= 0 total=11582 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2024825668.pdb -s /var/tmp/to_scwrl_2024825668.seq -o /var/tmp/from_scwrl_2024825668.pdb > /var/tmp/scwrl_2024825668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2024825668.pdb Number of alignments=1454 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2i51A)M1 T0506 15 :KIEPSAGAPFEAVRVARDVL 2i51A 2 :SLAPWRGAIAHALHRNRSLV T0506 36 :TSRTAALATLDP 2i51A 22 :YARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIE 2i51A 46 :GFL T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLA 2i51A 50 :DTNQLRFITDTRSAKADQIQQQPWAEICWY T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAI 2i51A 80 :FPNTREQFRMAGDLTLISSDDSHQDL T0506 217 :IDPDGIDLASASDLARLWF 2i51A 106 :QPARIAMWQELSDAARLQF T0506 237 :ERVETLKQFEKALAQLLK 2i51A 125 :GWPYPGKPRIKESGAFEP Number of specific fragments extracted= 8 number of extra gaps= 0 total=11590 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1909923588.pdb -s /var/tmp/to_scwrl_1909923588.seq -o /var/tmp/from_scwrl_1909923588.pdb > /var/tmp/scwrl_1909923588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909923588.pdb Number of alignments=1455 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 16 :IEPSAGAPFEAVRVARDVL 2i51A 3 :LAPWRGAIAHALHRNRSLV T0506 36 :TSRTAALATLDP 2i51A 22 :YARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIE 2i51A 46 :GFL T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLA 2i51A 50 :DTNQLRFITDTRSAKADQIQQQPWAEICWY T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAI 2i51A 80 :FPNTREQFRMAGDLTLISSDDSHQDL T0506 224 :LASASDLARLWF 2i51A 113 :WQELSDAARLQF T0506 237 :ERVETLKQFEKALAQLLK 2i51A 125 :GWPYPGKPRIKESGAFEP Number of specific fragments extracted= 8 number of extra gaps= 0 total=11598 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2061657824.pdb -s /var/tmp/to_scwrl_2061657824.seq -o /var/tmp/from_scwrl_2061657824.pdb > /var/tmp/scwrl_2061657824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061657824.pdb Number of alignments=1456 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 31 :RDVLH 2i51A 15 :HRNRS T0506 36 :TSRTAALATLDP 2i51A 22 :YARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIE 2i51A 46 :GFL T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLA 2i51A 50 :DTNQLRFITDTRSAKADQIQQQPWAEICWY T0506 98 :DALTLPRLTLVGRADRIGPDEVPLAIARYIARY 2i51A 80 :FPNTREQFRMAGDLTLISSDDSHQDLQPARIAM Number of specific fragments extracted= 6 number of extra gaps= 0 total=11604 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_936357131.pdb -s /var/tmp/to_scwrl_936357131.seq -o /var/tmp/from_scwrl_936357131.pdb > /var/tmp/scwrl_936357131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_936357131.pdb Number of alignments=1457 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 30 :ARDVLH 2i51A 14 :LHRNRS T0506 36 :TSRTAALATLDP 2i51A 22 :YARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIE 2i51A 46 :GFL T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLA 2i51A 50 :DTNQLRFITDTRSAKADQIQQQPWAEICWY T0506 98 :DALTLPRLTLVGRADRIGPDE 2i51A 80 :FPNTREQFRMAGDLTLISSDD T0506 122 :AIARYIARYPKAKLYLSLPDTRLY 2i51A 101 :SHQDLQPARIAMWQELSDAARLQF Number of specific fragments extracted= 7 number of extra gaps= 0 total=11611 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_916082682.pdb -s /var/tmp/to_scwrl_916082682.seq -o /var/tmp/from_scwrl_916082682.pdb > /var/tmp/scwrl_916082682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_916082682.pdb Number of alignments=1458 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 1 :MLDVAPPVITPRGTKIEPS 2i51A 1 :MSLAPWRGAIAHALHRNRS T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIGIEPDG 2i51A 20 :LVYARYLQLATVQPNGRPANRTLVFRGFLEDT T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPF 2i51A 53 :QLRFITDTRSAKADQIQQQPWAEICWYFP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLA 2i51A 82 :NTREQFRMAGDLTLISSDDSHQDLQPARIAMWQELSDAARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHL T0506 229 :DLARLWFAERVETLKQFEKALAQLLK 2i51A 168 :ELRGEPQNRWLYHRNDQQEWSSEAIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=11616 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_462881219.pdb -s /var/tmp/to_scwrl_462881219.seq -o /var/tmp/from_scwrl_462881219.pdb > /var/tmp/scwrl_462881219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462881219.pdb Number of alignments=1459 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 1 :MLDVAPPVITPRGTKIEPS 2i51A 1 :MSLAPWRGAIAHALHRNRS T0506 34 :LHTSRTAALATLDP 2i51A 20 :LVYARYLQLATVQP T0506 49 :SGYPYTT 2i51A 34 :NGRPANR T0506 56 :ATNIGIEPDG 2i51A 42 :LVFRGFLEDT T0506 124 :ARYIARYPKAKLYLSLPDTR 2i51A 65 :ADQIQQQPWAEICWYFPNTR T0506 145 :YRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLAS 2i51A 87 :FRMAGDLTLISSDDSHQDLQPARIAMWQELSDAARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLE T0506 227 :ASDLARLWFAERVET 2i51A 171 :GEPQNRWLYHRNDQQ T0506 246 :EKALAQLLK 2i51A 186 :EWSSEAINP Number of specific fragments extracted= 8 number of extra gaps= 0 total=11624 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2079689038.pdb -s /var/tmp/to_scwrl_2079689038.seq -o /var/tmp/from_scwrl_2079689038.pdb > /var/tmp/scwrl_2079689038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079689038.pdb Number of alignments=1460 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 127 :IARYPKAKLYLSLPDTRL 2i51A 68 :IQQQPWAEICWYFPNTRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=11625 # 2i51A read from all-align.a2m # found chain 2i51A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=11625 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 122 :AIARYIARYPKAKLYLSLPDTR 2i51A 63 :AKADQIQQQPWAEICWYFPNTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=11626 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_386071171.pdb -s /var/tmp/to_scwrl_386071171.seq -o /var/tmp/from_scwrl_386071171.pdb > /var/tmp/scwrl_386071171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_386071171.pdb Number of alignments=1461 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 123 :IARYIARYPKAKLYLSLPDTRLYR 2i51A 64 :KADQIQQQPWAEICWYFPNTREQF T0506 148 :R 2i51A 88 :R T0506 158 :PARNASNITPADLRTDLSGAEELMAAAESEATRLN 2i51A 89 :MAGDLTLISSDDSHQDLQPARIAMWQELSDAARLQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=11629 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1332586631.pdb -s /var/tmp/to_scwrl_1332586631.seq -o /var/tmp/from_scwrl_1332586631.pdb > /var/tmp/scwrl_1332586631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332586631.pdb Number of alignments=1462 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)A182 because last residue in template chain is (2i51A)P194 T0506 22 :APFEAVRVARDVLHT 2i51A 2 :SLAPWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGP 2i51A 85 :EQFRMAGDLTLISS T0506 117 :DEVPLAIARYIA 2i51A 100 :DSHQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 2i51A 152 :PNFCLLLLDPVQVDHLELRGEPQNRWLYHRNDQQEWSSEAIN Number of specific fragments extracted= 9 number of extra gaps= 0 total=11638 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_210082932.pdb -s /var/tmp/to_scwrl_210082932.seq -o /var/tmp/from_scwrl_210082932.pdb > /var/tmp/scwrl_210082932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210082932.pdb Number of alignments=1463 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)A182 because last residue in template chain is (2i51A)P194 T0506 22 :APFEAVRVARDVLHT 2i51A 2 :SLAPWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 2i51A 152 :PNFCLLLLDPVQVDHLELRGEPQNRWLYHRNDQQEWSSEAIN Number of specific fragments extracted= 9 number of extra gaps= 0 total=11647 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_914396569.pdb -s /var/tmp/to_scwrl_914396569.seq -o /var/tmp/from_scwrl_914396569.pdb > /var/tmp/scwrl_914396569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_914396569.pdb Number of alignments=1464 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)P219 because last residue in template chain is (2i51A)P194 T0506 15 :K 2i51A 2 :S T0506 23 :PFEAVRVARDVLHT 2i51A 3 :LAPWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 175 :SGAE 2i51A 173 :PQNR T0506 187 :EATRLNAIKGEASRLAV 2i51A 177 :WLYHRNDQQEWSSEAIN Number of specific fragments extracted= 12 number of extra gaps= 0 total=11659 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_32262032.pdb -s /var/tmp/to_scwrl_32262032.seq -o /var/tmp/from_scwrl_32262032.pdb > /var/tmp/scwrl_32262032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_32262032.pdb Number of alignments=1465 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)P219 because last residue in template chain is (2i51A)P194 T0506 21 :G 2i51A 2 :S T0506 23 :PFEAVRVARDVLHT 2i51A 3 :LAPWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEP 2i51A 47 :FLE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARNASN 2i51A 152 :PNFCLLLLDPVQVDHLELRGEPQNR T0506 202 :AVLAGAKTGRWKITSID 2i51A 177 :WLYHRNDQQEWSSEAIN Number of specific fragments extracted= 11 number of extra gaps= 0 total=11670 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1423040189.pdb -s /var/tmp/to_scwrl_1423040189.seq -o /var/tmp/from_scwrl_1423040189.pdb > /var/tmp/scwrl_1423040189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423040189.pdb Number of alignments=1466 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)P219 because last residue in template chain is (2i51A)P194 T0506 21 :G 2i51A 2 :S T0506 23 :PFEAVRVARDVLHT 2i51A 3 :LAPWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPD 2i51A 47 :FLED T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 52 :NQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 161 :NASNI 2i51A 177 :WLYHR T0506 207 :AKTGRWKITSID 2i51A 182 :NDQQEWSSEAIN Number of specific fragments extracted= 12 number of extra gaps= 0 total=11682 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2020120553.pdb -s /var/tmp/to_scwrl_2020120553.seq -o /var/tmp/from_scwrl_2020120553.pdb > /var/tmp/scwrl_2020120553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2020120553.pdb Number of alignments=1467 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2i51A)M1 T0506 15 :KIEP 2i51A 2 :SLAP T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIG 2i51A 85 :EQFRMAGDLTLIS T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 208 :KTGRWKITSIDPDGIDLAS 2i51A 173 :PQNRWLYHRNDQQEWSSEA Number of specific fragments extracted= 11 number of extra gaps= 0 total=11693 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1233627991.pdb -s /var/tmp/to_scwrl_1233627991.seq -o /var/tmp/from_scwrl_1233627991.pdb > /var/tmp/scwrl_1233627991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233627991.pdb Number of alignments=1468 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 T0506 21 :G 2i51A 2 :S T0506 23 :PFEAVRVARDVLHTS 2i51A 3 :LAPWRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 208 :KTGRWKITSIDPDGIDLAS 2i51A 173 :PQNRWLYHRNDQQEWSSEA Number of specific fragments extracted= 11 number of extra gaps= 0 total=11704 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_29294721.pdb -s /var/tmp/to_scwrl_29294721.seq -o /var/tmp/from_scwrl_29294721.pdb > /var/tmp/scwrl_29294721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29294721.pdb Number of alignments=1469 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 T0506 22 :APFEAVRVARDVLHTS 2i51A 2 :SLAPWRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGP 2i51A 85 :EQFRMAGDLTLISS T0506 117 :DEVPLAIARYIA 2i51A 100 :DSHQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 175 :SGAEELMAAAESEATRLNAI 2i51A 173 :PQNRWLYHRNDQQEWSSEAI Number of specific fragments extracted= 10 number of extra gaps= 0 total=11714 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1650416597.pdb -s /var/tmp/to_scwrl_1650416597.seq -o /var/tmp/from_scwrl_1650416597.pdb > /var/tmp/scwrl_1650416597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650416597.pdb Number of alignments=1470 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)E237 because last residue in template chain is (2i51A)P194 T0506 15 :KI 2i51A 2 :SL T0506 24 :FEAVRVARDVLHTS 2i51A 4 :APWRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRI 2i51A 85 :EQFRMAGDLTLI T0506 116 :P 2i51A 100 :D T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARNASN 2i51A 152 :PNFCLLLLDPVQVDHLELRGEPQNR T0506 223 :DLAS 2i51A 177 :WLYH T0506 229 :DLARLWFA 2i51A 186 :EWSSEAIN Number of specific fragments extracted= 13 number of extra gaps= 0 total=11727 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_506089293.pdb -s /var/tmp/to_scwrl_506089293.seq -o /var/tmp/from_scwrl_506089293.pdb > /var/tmp/scwrl_506089293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_506089293.pdb Number of alignments=1471 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 T0506 21 :G 2i51A 2 :S T0506 23 :PFEAVRVARDVLHTS 2i51A 3 :LAPWRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPD 2i51A 47 :FLED T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 52 :NQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRI 2i51A 85 :EQFRMAGDLTLI T0506 115 :GP 2i51A 99 :DD T0506 117 :DEVPLAIARYIA 2i51A 104 :DLQPARIAMWQE T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 227 :ASDLARLWFAER 2i51A 173 :PQNRWLYHRNDQ Number of specific fragments extracted= 12 number of extra gaps= 0 total=11739 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2112209111.pdb -s /var/tmp/to_scwrl_2112209111.seq -o /var/tmp/from_scwrl_2112209111.pdb > /var/tmp/scwrl_2112209111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2112209111.pdb Number of alignments=1472 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)P219 because last residue in template chain is (2i51A)P194 T0506 21 :GA 2i51A 2 :SL T0506 24 :FEAVRVARDVLHTS 2i51A 4 :APWRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIG 2i51A 85 :EQFRMAGDLTLIS T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNIT 2i51A 152 :PNFCLLLLDPVQVDHLELRGEPQNRWL T0506 204 :LAGAKTGRWKITSID 2i51A 179 :YHRNDQQEWSSEAIN Number of specific fragments extracted= 11 number of extra gaps= 0 total=11750 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1158648065.pdb -s /var/tmp/to_scwrl_1158648065.seq -o /var/tmp/from_scwrl_1158648065.pdb > /var/tmp/scwrl_1158648065.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1158648065.pdb Number of alignments=1473 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 T0506 21 :G 2i51A 2 :S T0506 23 :PFEAVRVARDVLHT 2i51A 3 :LAPWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIG 2i51A 85 :EQFRMAGDLTLIS T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 208 :KTGRWKITSIDPDGIDLAS 2i51A 173 :PQNRWLYHRNDQQEWSSEA Number of specific fragments extracted= 11 number of extra gaps= 0 total=11761 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1191844265.pdb -s /var/tmp/to_scwrl_1191844265.seq -o /var/tmp/from_scwrl_1191844265.pdb > /var/tmp/scwrl_1191844265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1191844265.pdb Number of alignments=1474 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGP 2i51A 85 :EQFRMAGDLTLISS T0506 117 :DEVPLAIARYIA 2i51A 100 :DSHQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 175 :SGAEELMAA 2i51A 173 :PQNRWLYHR Number of specific fragments extracted= 9 number of extra gaps= 0 total=11770 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2023887464.pdb -s /var/tmp/to_scwrl_2023887464.seq -o /var/tmp/from_scwrl_2023887464.pdb > /var/tmp/scwrl_2023887464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2023887464.pdb Number of alignments=1475 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=11778 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_868589179.pdb -s /var/tmp/to_scwrl_868589179.seq -o /var/tmp/from_scwrl_868589179.pdb > /var/tmp/scwrl_868589179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_868589179.pdb Number of alignments=1476 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 175 :SGA 2i51A 173 :PQN T0506 186 :SE 2i51A 176 :RW Number of specific fragments extracted= 10 number of extra gaps= 0 total=11788 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1987897726.pdb -s /var/tmp/to_scwrl_1987897726.seq -o /var/tmp/from_scwrl_1987897726.pdb > /var/tmp/scwrl_1987897726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1987897726.pdb Number of alignments=1477 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 25 :EAVRVARDVLHT 2i51A 5 :PWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEP 2i51A 47 :FLE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=11797 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1215305218.pdb -s /var/tmp/to_scwrl_1215305218.seq -o /var/tmp/from_scwrl_1215305218.pdb > /var/tmp/scwrl_1215305218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1215305218.pdb Number of alignments=1478 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPD 2i51A 47 :FLED T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 52 :NQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=11805 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2074522592.pdb -s /var/tmp/to_scwrl_2074522592.seq -o /var/tmp/from_scwrl_2074522592.pdb > /var/tmp/scwrl_2074522592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074522592.pdb Number of alignments=1479 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIG 2i51A 85 :EQFRMAGDLTLIS T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARN 2i51A 152 :PNFCLLLLDPVQVDHLELRGEP Number of specific fragments extracted= 9 number of extra gaps= 0 total=11814 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_315647728.pdb -s /var/tmp/to_scwrl_315647728.seq -o /var/tmp/from_scwrl_315647728.pdb > /var/tmp/scwrl_315647728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315647728.pdb Number of alignments=1480 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIA 2i51A 102 :HQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 208 :KT 2i51A 173 :PQ Number of specific fragments extracted= 10 number of extra gaps= 0 total=11824 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_862786286.pdb -s /var/tmp/to_scwrl_862786286.seq -o /var/tmp/from_scwrl_862786286.pdb > /var/tmp/scwrl_862786286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862786286.pdb Number of alignments=1481 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGP 2i51A 85 :EQFRMAGDLTLISS T0506 117 :DEVPLAIARYIA 2i51A 100 :DSHQDLQPARIA T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 175 :S 2i51A 173 :P Number of specific fragments extracted= 9 number of extra gaps= 0 total=11833 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1393874150.pdb -s /var/tmp/to_scwrl_1393874150.seq -o /var/tmp/from_scwrl_1393874150.pdb > /var/tmp/scwrl_1393874150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1393874150.pdb Number of alignments=1482 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 15 :KIEP 2i51A 2 :SLAP T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRI 2i51A 85 :EQFRMAGDLTLI T0506 116 :P 2i51A 100 :D T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARN 2i51A 152 :PNFCLLLLDPVQVDHLELRGEP Number of specific fragments extracted= 11 number of extra gaps= 0 total=11844 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1150002145.pdb -s /var/tmp/to_scwrl_1150002145.seq -o /var/tmp/from_scwrl_1150002145.pdb > /var/tmp/scwrl_1150002145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1150002145.pdb Number of alignments=1483 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 15 :KIEP 2i51A 2 :SLAP T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPD 2i51A 47 :FLED T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 52 :NQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRI 2i51A 85 :EQFRMAGDLTLI T0506 115 :GP 2i51A 99 :DD T0506 117 :DEVPLAIARYIA 2i51A 104 :DLQPARIAMWQE T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE T0506 227 :ASDLA 2i51A 173 :PQNRW Number of specific fragments extracted= 12 number of extra gaps= 0 total=11856 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2096971165.pdb -s /var/tmp/to_scwrl_2096971165.seq -o /var/tmp/from_scwrl_2096971165.pdb > /var/tmp/scwrl_2096971165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2096971165.pdb Number of alignments=1484 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 26 :AVRVARDVLHTS 2i51A 6 :WRGAIAHALHRN T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIG 2i51A 85 :EQFRMAGDLTLIS T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPARN 2i51A 152 :PNFCLLLLDPVQVDHLELRGEP Number of specific fragments extracted= 9 number of extra gaps= 0 total=11865 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1271216172.pdb -s /var/tmp/to_scwrl_1271216172.seq -o /var/tmp/from_scwrl_1271216172.pdb > /var/tmp/scwrl_1271216172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271216172.pdb Number of alignments=1485 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 25 :EAVRVARDVLHT 2i51A 5 :PWRGAIAHALHR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGT 2i51A 47 :FLEDTN T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 54 :LRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIG 2i51A 85 :EQFRMAGDLTLIS T0506 117 :DEVPLAIARYIA 2i51A 103 :QDLQPARIAMWQ T0506 129 :RYPKAKLYLSL 2i51A 135 :KESGAFEPSPP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2i51A 152 :PNFCLLLLDPVQVDHLELRGE Number of specific fragments extracted= 9 number of extra gaps= 0 total=11874 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_912442088.pdb -s /var/tmp/to_scwrl_912442088.seq -o /var/tmp/from_scwrl_912442088.pdb > /var/tmp/scwrl_912442088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912442088.pdb Number of alignments=1486 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2i51A)M1 T0506 6 :PPVITPRGTKIEPSAGAPFEAVRVA 2i51A 2 :SLAPWRGAIAHALHRNRSLVYARYL T0506 41 :ALATLDP 2i51A 27 :QLATVQP T0506 49 :SGYPY 2i51A 34 :NGRPA T0506 54 :TTATNIGIEPDGTPFFFAA 2i51A 40 :RTLVFRGFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPK 2i51A 105 :LQPARIAMWQELSD T0506 133 :AKLYLSLP 2i51A 120 :ARLQFGWP T0506 157 :GPARNASNITPADLRTDLSGAEE 2i51A 128 :YPGKPRIKESGAFEPSPPDPIEP T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQ 2i51A 151 :VPNFCLLLLDPVQVDHLELRGEPQNRWLYHRNDQQEWSSEAIN Number of specific fragments extracted= 10 number of extra gaps= 0 total=11884 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2011145342.pdb -s /var/tmp/to_scwrl_2011145342.seq -o /var/tmp/from_scwrl_2011145342.pdb > /var/tmp/scwrl_2011145342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011145342.pdb Number of alignments=1487 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)V8 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)P219 because last residue in template chain is (2i51A)P194 T0506 9 :ITPRGTKIEPSAGAPFEAVRVARDV 2i51A 2 :SLAPWRGAIAHALHRNRSLVYARYL T0506 41 :ALATLDP 2i51A 27 :QLATVQP T0506 49 :SGYPYTTATNIGIEP 2i51A 34 :NGRPANRTLVFRGFL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLSL 2i51A 106 :QPARIAMWQELSDAARLQFGW T0506 156 :GGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAK 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLY T0506 209 :TGRWKITSID 2i51A 184 :QQEWSSEAIN Number of specific fragments extracted= 8 number of extra gaps= 0 total=11892 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_60089656.pdb -s /var/tmp/to_scwrl_60089656.seq -o /var/tmp/from_scwrl_60089656.pdb > /var/tmp/scwrl_60089656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_60089656.pdb Number of alignments=1488 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)P219 because last residue in template chain is (2i51A)P194 T0506 6 :PPVITPRGTKIEPS 2i51A 2 :SLAPWRGAIAHALH T0506 23 :PFEAVRVARDV 2i51A 16 :RNRSLVYARYL T0506 41 :ALATLDP 2i51A 27 :QLATVQP T0506 49 :SGYPYT 2i51A 34 :NGRPAN T0506 55 :TATNIGIEP 2i51A 41 :TLVFRGFLE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNT T0506 102 :LPRLTLVGRADRIGPDE 2i51A 84 :REQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLS 2i51A 106 :QPARIAMWQELSDAARLQFG T0506 155 :NGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAK 2i51A 126 :WPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLY T0506 209 :TGRWKITSID 2i51A 184 :QQEWSSEAIN Number of specific fragments extracted= 10 number of extra gaps= 0 total=11902 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1828524769.pdb -s /var/tmp/to_scwrl_1828524769.seq -o /var/tmp/from_scwrl_1828524769.pdb > /var/tmp/scwrl_1828524769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1828524769.pdb Number of alignments=1489 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)F245 because last residue in template chain is (2i51A)P194 T0506 21 :GAPFEAVRVARDVLHT 2i51A 2 :SLAPWRGAIAHALHRN T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIGIEP 2i51A 34 :NGRPANRTLVFRGFL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPK 2i51A 105 :LQPARIAMWQELSD T0506 133 :AKLYLSL 2i51A 120 :ARLQFGW T0506 156 :GGPARNASNITPADLRTDLSGAEE 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEP T0506 209 :TGRWKITSIDP 2i51A 151 :VPNFCLLLLDP T0506 220 :DGIDLASASDLARLWFAERVETL 2i51A 165 :DHLELRGEPQNRWLYHRNDQQEW T0506 243 :KQ 2i51A 192 :IN Number of specific fragments extracted= 11 number of extra gaps= 0 total=11913 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_326542914.pdb -s /var/tmp/to_scwrl_326542914.seq -o /var/tmp/from_scwrl_326542914.pdb > /var/tmp/scwrl_326542914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326542914.pdb Number of alignments=1490 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)P219 because last residue in template chain is (2i51A)P194 T0506 15 :KIEPS 2i51A 2 :SLAPW T0506 26 :AVRVARDVLH 2i51A 7 :RGAIAHALHR T0506 36 :TSRTAALATLDP 2i51A 22 :YARYLQLATVQP T0506 49 :SGYPYTTATNIGIEP 2i51A 34 :NGRPANRTLVFRGFL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYF T0506 99 :ALTLPRLTLVGRADRIGPDE 2i51A 81 :PNTREQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLS 2i51A 106 :QPARIAMWQELSDAARLQFG T0506 139 :LPDTRLYRLRTEGVQINGGPAR 2i51A 151 :VPNFCLLLLDPVQVDHLELRGE T0506 161 :NASNITP 2i51A 176 :RWLYHRN T0506 208 :KTGRWKITSID 2i51A 183 :DQQEWSSEAIN Number of specific fragments extracted= 10 number of extra gaps= 0 total=11923 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2139778694.pdb -s /var/tmp/to_scwrl_2139778694.seq -o /var/tmp/from_scwrl_2139778694.pdb > /var/tmp/scwrl_2139778694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2139778694.pdb Number of alignments=1491 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 T0506 21 :GAPFEAVRVARDVLHT 2i51A 2 :SLAPWRGAIAHALHRN T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPY 2i51A 34 :NGRPA T0506 54 :TTATNIGIEPDGTPFFFAA 2i51A 40 :RTLVFRGFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLSL 2i51A 106 :QPARIAMWQELSDAARLQFGW T0506 156 :GGPARNASNITPADLRTDLSGAEE 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEP T0506 209 :TGRWKITSIDPDGID 2i51A 151 :VPNFCLLLLDPVQVD T0506 224 :LASASDLARLWFAERVET 2i51A 169 :LRGEPQNRWLYHRNDQQE Number of specific fragments extracted= 10 number of extra gaps= 0 total=11933 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_67112293.pdb -s /var/tmp/to_scwrl_67112293.seq -o /var/tmp/from_scwrl_67112293.pdb > /var/tmp/scwrl_67112293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_67112293.pdb Number of alignments=1492 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2i51A)M1 T0506 6 :PPVITPRGTKIEPSAGAPF 2i51A 2 :SLAPWRGAIAHALHRNRSL T0506 35 :HTSRTAALATLDP 2i51A 21 :VYARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIEP 2i51A 46 :GFLE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLSL 2i51A 106 :QPARIAMWQELSDAARLQFGW T0506 156 :GGPARNASNITPADLRTDLSGAEE 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEP T0506 209 :TGRWKITSIDP 2i51A 151 :VPNFCLLLLDP T0506 220 :DGIDLASASDLARLWFAERVETL 2i51A 165 :DHLELRGEPQNRWLYHRNDQQEW Number of specific fragments extracted= 10 number of extra gaps= 0 total=11943 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1659129546.pdb -s /var/tmp/to_scwrl_1659129546.seq -o /var/tmp/from_scwrl_1659129546.pdb > /var/tmp/scwrl_1659129546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659129546.pdb Number of alignments=1493 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)F245 because last residue in template chain is (2i51A)P194 T0506 6 :PPVITPRGTKIEPSAGAPFEAVRVA 2i51A 2 :SLAPWRGAIAHALHRNRSLVYARYL T0506 41 :ALATLDP 2i51A 27 :QLATVQP T0506 49 :SGYPYT 2i51A 34 :NGRPAN T0506 55 :TATNIGIEP 2i51A 41 :TLVFRGFLE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPN T0506 101 :TLPRLTLVGRADRIGPDE 2i51A 83 :TREQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLSL 2i51A 106 :QPARIAMWQELSDAARLQFGW T0506 156 :GGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIK 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDH T0506 222 :IDLASASDLARLWFAERVETLKQ 2i51A 167 :LELRGEPQNRWLYHRNDQQEWSS Number of specific fragments extracted= 9 number of extra gaps= 0 total=11952 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_202377979.pdb -s /var/tmp/to_scwrl_202377979.seq -o /var/tmp/from_scwrl_202377979.pdb > /var/tmp/scwrl_202377979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202377979.pdb Number of alignments=1494 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)V239 because last residue in template chain is (2i51A)P194 T0506 19 :SAGAPFEAVRVAR 2i51A 2 :SLAPWRGAIAHAL T0506 35 :HT 2i51A 15 :HR T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIEPDGTPFFFAAGL 2i51A 46 :GFLEDTNQLRFITDT T0506 75 :TLHARNMETDARISVTLAPFGK 2i51A 62 :SAKADQIQQQPWAEICWYFPNT T0506 102 :LPRLTLVGRADRIGPDE 2i51A 84 :REQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPK 2i51A 105 :LQPARIAMWQELSD T0506 133 :AKLYLS 2i51A 120 :ARLQFG T0506 139 :LPDTRLYRLRTEGVQINGGPAR 2i51A 151 :VPNFCLLLLDPVQVDHLELRGE T0506 209 :TGRW 2i51A 174 :QNRW T0506 223 :DLASASDLARLWFAER 2i51A 178 :LYHRNDQQEWSSEAIN Number of specific fragments extracted= 12 number of extra gaps= 0 total=11964 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_981508862.pdb -s /var/tmp/to_scwrl_981508862.seq -o /var/tmp/from_scwrl_981508862.pdb > /var/tmp/scwrl_981508862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_981508862.pdb Number of alignments=1495 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)P18 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)V239 because last residue in template chain is (2i51A)P194 T0506 19 :SAGAPFEAVRVARD 2i51A 2 :SLAPWRGAIAHALH T0506 39 :TAALATLDP 2i51A 25 :YLQLATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGTPFFFAA 2i51A 47 :FLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPF 2i51A 60 :TRSAKADQIQQQPWAEICWYFP T0506 100 :LTLPRLTLVGRADRIG 2i51A 82 :NTREQFRMAGDLTLIS T0506 116 :PDEVPLAIARYIARYPKAKLYLS 2i51A 103 :QDLQPARIAMWQELSDAARLQFG T0506 139 :LPDTRLYRLRTEGVQINGGPAR 2i51A 151 :VPNFCLLLLDPVQVDHLELRGE T0506 210 :GRWK 2i51A 174 :QNRW T0506 223 :DLASASDLARLWFAER 2i51A 178 :LYHRNDQQEWSSEAIN Number of specific fragments extracted= 10 number of extra gaps= 0 total=11974 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1691391578.pdb -s /var/tmp/to_scwrl_1691391578.seq -o /var/tmp/from_scwrl_1691391578.pdb > /var/tmp/scwrl_1691391578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1691391578.pdb Number of alignments=1496 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)V239 because last residue in template chain is (2i51A)P194 T0506 21 :GAPFEAVRVARDVLHT 2i51A 2 :SLAPWRGAIAHALHRN T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIEPDGTPFFFAA 2i51A 46 :GFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGK 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNT T0506 102 :LPRLTLVGRADRIGPDE 2i51A 84 :REQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLS 2i51A 106 :QPARIAMWQELSDAARLQFG T0506 139 :LPDTRLYRLRTEGVQINGGPARNAS 2i51A 151 :VPNFCLLLLDPVQVDHLELRGEPQN T0506 212 :WK 2i51A 176 :RW T0506 223 :DLASASDLARLWFAER 2i51A 178 :LYHRNDQQEWSSEAIN Number of specific fragments extracted= 10 number of extra gaps= 0 total=11984 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1625418168.pdb -s /var/tmp/to_scwrl_1625418168.seq -o /var/tmp/from_scwrl_1625418168.pdb > /var/tmp/scwrl_1625418168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1625418168.pdb Number of alignments=1497 # 2i51A read from all-align.a2m # found chain 2i51A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2i51A)M1 Warning: unaligning (T0506)V239 because last residue in template chain is (2i51A)P194 T0506 21 :GAPFEAVRVARDVLHT 2i51A 2 :SLAPWRGAIAHALHRN T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYT 2i51A 34 :NGRPAN T0506 55 :TATNIGIEPDGTPFFFAA 2i51A 41 :TLVFRGFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPK 2i51A 105 :LQPARIAMWQELSD T0506 133 :AKLYLS 2i51A 138 :GAFEPS T0506 139 :LPDTRLYRLRTEGVQINGGPARNAS 2i51A 151 :VPNFCLLLLDPVQVDHLELRGEPQN T0506 212 :WKI 2i51A 176 :RWL T0506 224 :LASASDLARLWFAER 2i51A 179 :YHRNDQQEWSSEAIN Number of specific fragments extracted= 11 number of extra gaps= 0 total=11995 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_854145768.pdb -s /var/tmp/to_scwrl_854145768.seq -o /var/tmp/from_scwrl_854145768.pdb > /var/tmp/scwrl_854145768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854145768.pdb Number of alignments=1498 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 42 :LATLDP 2i51A 28 :LATVQP T0506 49 :SGYPY 2i51A 34 :NGRPA T0506 54 :TTATNIGIEPDGTPFFFAA 2i51A 40 :RTLVFRGFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAK 2i51A 105 :LQPARIAMWQELSDAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=12001 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_777535923.pdb -s /var/tmp/to_scwrl_777535923.seq -o /var/tmp/from_scwrl_777535923.pdb > /var/tmp/scwrl_777535923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_777535923.pdb Number of alignments=1499 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 159 :ARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGE 2i51A 130 :GKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=12002 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1654712889.pdb -s /var/tmp/to_scwrl_1654712889.seq -o /var/tmp/from_scwrl_1654712889.pdb > /var/tmp/scwrl_1654712889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1654712889.pdb Number of alignments=1500 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 74 :LTLHARNMETDARISVTLAPFGK 2i51A 61 :RSAKADQIQQQPWAEICWYFPNT T0506 102 :LPRLTLVGRADRIGPDE 2i51A 84 :REQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLS 2i51A 106 :QPARIAMWQELSDAARLQFG T0506 155 :NGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASR 2i51A 126 :WPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRG Number of specific fragments extracted= 4 number of extra gaps= 0 total=12006 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_357078719.pdb -s /var/tmp/to_scwrl_357078719.seq -o /var/tmp/from_scwrl_357078719.pdb > /var/tmp/scwrl_357078719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_357078719.pdb Number of alignments=1501 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 38 :RTAALATLDP 2i51A 24 :RYLQLATVQP T0506 49 :SGYPYTTATNIGIEP 2i51A 34 :NGRPANRTLVFRGFL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLY 2i51A 105 :LQPARIAMWQELSDAARL Number of specific fragments extracted= 5 number of extra gaps= 0 total=12011 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1283625216.pdb -s /var/tmp/to_scwrl_1283625216.seq -o /var/tmp/from_scwrl_1283625216.pdb > /var/tmp/scwrl_1283625216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1283625216.pdb Number of alignments=1502 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNIGIEP 2i51A 34 :NGRPANRTLVFRGFL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYF T0506 99 :ALTLPRLTLVGRADRIGPDE 2i51A 81 :PNTREQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKL 2i51A 106 :QPARIAMWQELSDAARL Number of specific fragments extracted= 5 number of extra gaps= 0 total=12016 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1619438353.pdb -s /var/tmp/to_scwrl_1619438353.seq -o /var/tmp/from_scwrl_1619438353.pdb > /var/tmp/scwrl_1619438353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1619438353.pdb Number of alignments=1503 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 39 :TAALATLDP 2i51A 25 :YLQLATVQP T0506 49 :SGYPY 2i51A 34 :NGRPA T0506 54 :TTATNIGIEPDGTPFFFAA 2i51A 40 :RTLVFRGFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLSL 2i51A 106 :QPARIAMWQELSDAARLQFGW T0506 156 :GGPARNASNITPADLRTDLSGAEE 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEP T0506 209 :TGRWKITSIDPDGIDLAS 2i51A 151 :VPNFCLLLLDPVQVDHLE T0506 227 :ASDLARLWF 2i51A 172 :EPQNRWLYH Number of specific fragments extracted= 9 number of extra gaps= 0 total=12025 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1515726784.pdb -s /var/tmp/to_scwrl_1515726784.seq -o /var/tmp/from_scwrl_1515726784.pdb > /var/tmp/scwrl_1515726784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1515726784.pdb Number of alignments=1504 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 37 :SRTAALATLDP 2i51A 23 :ARYLQLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIEP 2i51A 46 :GFLE T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2i51A 51 :TNQLRFITDTRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLSL 2i51A 106 :QPARIAMWQELSDAARLQFGW T0506 156 :GGPARNASNITPADLRTDLSGAEE 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEP T0506 209 :TGRWKITSIDP 2i51A 151 :VPNFCLLLLDP T0506 220 :DGIDLASASDLARLWFA 2i51A 165 :DHLELRGEPQNRWLYHR Number of specific fragments extracted= 9 number of extra gaps= 0 total=12034 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_327985835.pdb -s /var/tmp/to_scwrl_327985835.seq -o /var/tmp/from_scwrl_327985835.pdb > /var/tmp/scwrl_327985835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327985835.pdb Number of alignments=1505 # 2i51A read from all-align.a2m # found chain 2i51A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=12034 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 42 :LATLDP 2i51A 28 :LATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIEPDGTPFFFAAGL 2i51A 46 :GFLEDTNQLRFITDT T0506 75 :TLHARNMETDARISVTLAPFGK 2i51A 62 :SAKADQIQQQPWAEICWYFPNT T0506 102 :LPRLTLVGRADRIGPDE 2i51A 84 :REQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLS 2i51A 106 :QPARIAMWQELSDAARLQFG T0506 139 :LPDTRLYRLRTEGVQING 2i51A 151 :VPNFCLLLLDPVQVDHLE Number of specific fragments extracted= 7 number of extra gaps= 0 total=12041 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1495842170.pdb -s /var/tmp/to_scwrl_1495842170.seq -o /var/tmp/from_scwrl_1495842170.pdb > /var/tmp/scwrl_1495842170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495842170.pdb Number of alignments=1506 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 42 :LATLDP 2i51A 28 :LATVQP T0506 49 :SGYPYTTATNIG 2i51A 34 :NGRPANRTLVFR T0506 61 :IEPDGTPFFFAA 2i51A 47 :FLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPF 2i51A 60 :TRSAKADQIQQQPWAEICWYFP T0506 100 :LTLPRLTLVGRADRIG 2i51A 82 :NTREQFRMAGDLTLIS T0506 116 :PDEVPLAIARYIARYPKAKLYLS 2i51A 103 :QDLQPARIAMWQELSDAARLQFG T0506 139 :LPDTRLYRLRTEGVQINGGPA 2i51A 151 :VPNFCLLLLDPVQVDHLELRG Number of specific fragments extracted= 7 number of extra gaps= 0 total=12048 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_236832316.pdb -s /var/tmp/to_scwrl_236832316.seq -o /var/tmp/from_scwrl_236832316.pdb > /var/tmp/scwrl_236832316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236832316.pdb Number of alignments=1507 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 41 :ALATLDP 2i51A 27 :QLATVQP T0506 49 :SGYPYTTATNI 2i51A 34 :NGRPANRTLVF T0506 60 :GIEPDGTPFFFAA 2i51A 46 :GFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGK 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNT T0506 102 :LPRLTLVGRADRIGPDE 2i51A 84 :REQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKLYLS 2i51A 106 :QPARIAMWQELSDAARLQFG T0506 139 :LPDTRLYRLRTEGVQINGGPAR 2i51A 151 :VPNFCLLLLDPVQVDHLELRGE Number of specific fragments extracted= 7 number of extra gaps= 0 total=12055 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_168399914.pdb -s /var/tmp/to_scwrl_168399914.seq -o /var/tmp/from_scwrl_168399914.pdb > /var/tmp/scwrl_168399914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_168399914.pdb Number of alignments=1508 # 2i51A read from all-align.a2m # found chain 2i51A in template set T0506 39 :TAALATLDP 2i51A 25 :YLQLATVQP T0506 49 :SGYPYT 2i51A 34 :NGRPAN T0506 55 :TATNIGIEPDGTPFFFAA 2i51A 41 :TLVFRGFLEDTNQLRFIT T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2i51A 60 :TRSAKADQIQQQPWAEICWYFPNTR T0506 103 :PRLTLVGRADRIGPDE 2i51A 85 :EQFRMAGDLTLISSDD T0506 119 :VPLAIARYIARYPKAKL 2i51A 105 :LQPARIAMWQELSDAAR T0506 136 :YLSL 2i51A 123 :QFGW T0506 156 :GGPARNASNITPADLRTDLSGAEE 2i51A 127 :PYPGKPRIKESGAFEPSPPDPIEP T0506 209 :TGRWKITSIDP 2i51A 151 :VPNFCLLLLDP Number of specific fragments extracted= 9 number of extra gaps= 0 total=12064 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_563663743.pdb -s /var/tmp/to_scwrl_563663743.seq -o /var/tmp/from_scwrl_563663743.pdb > /var/tmp/scwrl_563663743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_563663743.pdb Number of alignments=1509 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 3 :DVAPPVITPR 2iabA 3 :TPPARTAKQR T0506 30 :ARDVLHTSRT 2iabA 13 :IQDTLNRLEL T0506 40 :AALATLDPVSGYPYTTATNIGIE 2iabA 26 :AWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGP T0506 101 :TLPRLTLVGRADRIGPDE 2iabA 79 :TRDLVLVEGTALPLEPAG T0506 244 :QFEKALAQLLK 2iabA 97 :LPDGVGDTFAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=12070 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_163871261.pdb -s /var/tmp/to_scwrl_163871261.seq -o /var/tmp/from_scwrl_163871261.pdb > /var/tmp/scwrl_163871261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_163871261.pdb Number of alignments=1510 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)W212 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 30 :ARDVLHTSRT 2iabA 13 :IQDTLNRLEL T0506 40 :AALATLDPVSGYPYTTATNIGIE 2iabA 26 :AWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGP T0506 101 :TLPRLTLVGRADRIGPDE 2iabA 79 :TRDLVLVEGTALPLEPAG T0506 197 :EASRLAV 2iabA 105 :FAEKTGF T0506 210 :GR 2iabA 118 :TS T0506 214 :ITSIDPDGIDLASASD 2iabA 122 :YFRISPRRVQAWREAN T0506 232 :RLWFAERVE 2iabA 138 :ELSGRELMR T0506 247 :KALAQL 2iabA 147 :DGEWLV Number of specific fragments extracted= 9 number of extra gaps= 1 total=12079 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_484047642.pdb -s /var/tmp/to_scwrl_484047642.seq -o /var/tmp/from_scwrl_484047642.pdb > /var/tmp/scwrl_484047642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484047642.pdb Number of alignments=1511 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 31 :RDVLHTSRT 2iabA 14 :QDTLNRLEL T0506 40 :AALATLDPVSGYPYTTATNIGIE 2iabA 26 :AWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGP T0506 101 :TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 79 :TRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE Number of specific fragments extracted= 5 number of extra gaps= 1 total=12084 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1426450028.pdb -s /var/tmp/to_scwrl_1426450028.seq -o /var/tmp/from_scwrl_1426450028.pdb > /var/tmp/scwrl_1426450028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1426450028.pdb Number of alignments=1512 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 30 :ARDVLHTSRT 2iabA 13 :IQDTLNRLEL T0506 40 :AALATLDPVSGYPYTTATNIGIE 2iabA 26 :AWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAP 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGP T0506 101 :TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 79 :TRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE Number of specific fragments extracted= 5 number of extra gaps= 1 total=12089 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1557745412.pdb -s /var/tmp/to_scwrl_1557745412.seq -o /var/tmp/from_scwrl_1557745412.pdb > /var/tmp/scwrl_1557745412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1557745412.pdb Number of alignments=1513 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)D229 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)L230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 1 :MLDVAPPVITPRGT 2iabA 3 :TPPARTAKQRIQDT T0506 31 :RDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTP 2iabA 17 :LNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFL T0506 69 :FFAAGLTLHARNMETDARISVTLA 2iabA 54 :VATPAASPTGRNLSETGRVRLGIG T0506 95 :GKGDALTLPRLTLVGRADR 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 206 :GAKTGRWKITSIDPDGIDLASAS 2iabA 97 :LPDGVGDTFAEKTGFDPRRLTTS T0506 231 :ARLWFAERVETLKQFEKALAQLLK 2iabA 122 :YFRISPRRVQAWREANELSGRELM Number of specific fragments extracted= 6 number of extra gaps= 1 total=12095 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1634049788.pdb -s /var/tmp/to_scwrl_1634049788.seq -o /var/tmp/from_scwrl_1634049788.pdb > /var/tmp/scwrl_1634049788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1634049788.pdb Number of alignments=1514 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)D229 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)L230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 10 :TPRGTKIEPSAG 2iabA 3 :TPPARTAKQRIQ T0506 30 :ARDVLHTSRTAALATLDPVSGYPYTTATNIG 2iabA 16 :TLNRLELDVDAWVSTAGADGGAPYLVPLSYL T0506 63 :PDGTPF 2iabA 47 :WDGETF T0506 69 :FFAAGLTLHARNMETDARISVTLA 2iabA 54 :VATPAASPTGRNLSETGRVRLGIG T0506 95 :GKGDALTLPRLTLVGRADR 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 206 :GAKTGRWKITSIDPDGIDLASAS 2iabA 97 :LPDGVGDTFAEKTGFDPRRLTTS T0506 231 :ARLWFAERVETLKQFEKALAQL 2iabA 122 :YFRISPRRVQAWREANELSGRE Number of specific fragments extracted= 7 number of extra gaps= 1 total=12102 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1375937546.pdb -s /var/tmp/to_scwrl_1375937546.seq -o /var/tmp/from_scwrl_1375937546.pdb > /var/tmp/scwrl_1375937546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375937546.pdb Number of alignments=1515 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 31 :RDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTP 2iabA 17 :LNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFL T0506 69 :FFAAGLTLHARNMETDARISVTLA 2iabA 54 :VATPAASPTGRNLSETGRVRLGIG T0506 95 :GKGDALTLPRLTLVGRADRIGPDEVPLAIARY 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=12105 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_681477938.pdb -s /var/tmp/to_scwrl_681477938.seq -o /var/tmp/from_scwrl_681477938.pdb > /var/tmp/scwrl_681477938.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681477938.pdb Number of alignments=1516 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 31 :RDVLHTSRTAALATLDPVSGYPYTTATNIG 2iabA 17 :LNRLELDVDAWVSTAGADGGAPYLVPLSYL T0506 63 :PDGTPF 2iabA 47 :WDGETF T0506 69 :FFAAGLTLHARNMETDARISVTLA 2iabA 54 :VATPAASPTGRNLSETGRVRLGIG T0506 95 :GKGDALTLPRLTLVGRADRIGPDEVPLAIARYI 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTG Number of specific fragments extracted= 4 number of extra gaps= 0 total=12109 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_399008229.pdb -s /var/tmp/to_scwrl_399008229.seq -o /var/tmp/from_scwrl_399008229.pdb > /var/tmp/scwrl_399008229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_399008229.pdb Number of alignments=1517 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 45 :LDPVSGYPYTTATNIGIEPDGTP 2iabA 76 :IGPTRDLVLVEGTALPLEPAGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12110 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1239599241.pdb -s /var/tmp/to_scwrl_1239599241.seq -o /var/tmp/from_scwrl_1239599241.pdb > /var/tmp/scwrl_1239599241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239599241.pdb Number of alignments=1518 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 78 :ARNMETDARISVTLAP 2iabA 63 :GRNLSETGRVRLGIGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=12111 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)A183 because last residue in template chain is (2iabA)D154 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE T0506 162 :ASNITPADLRT 2iabA 136 :ANELSGRELMR T0506 176 :GAEELMA 2iabA 147 :DGEWLVT Number of specific fragments extracted= 11 number of extra gaps= 1 total=12122 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_741567594.pdb -s /var/tmp/to_scwrl_741567594.seq -o /var/tmp/from_scwrl_741567594.pdb > /var/tmp/scwrl_741567594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_741567594.pdb Number of alignments=1519 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)E185 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGPTRDL T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 83 :VLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGV 2iabA 122 :YFRISPRRV T0506 162 :ASNITPADLRTDLSGAEELMAAA 2iabA 131 :QAWREANELSGRELMRDGEWLVT Number of specific fragments extracted= 5 number of extra gaps= 1 total=12127 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_80049351.pdb -s /var/tmp/to_scwrl_80049351.seq -o /var/tmp/from_scwrl_80049351.pdb > /var/tmp/scwrl_80049351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80049351.pdb Number of alignments=1520 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)A183 because last residue in template chain is (2iabA)D154 T0506 20 :AGAPFEAVRVARDVLHTSRT 2iabA 3 :TPPARTAKQRIQDTLNRLEL T0506 40 :AALATLDPVSGYPYTTATNIGIE 2iabA 26 :AWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE T0506 162 :ASNITPADLRTD 2iabA 136 :ANELSGRELMRD T0506 177 :AEELMA 2iabA 148 :GEWLVT Number of specific fragments extracted= 10 number of extra gaps= 1 total=12137 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1566142156.pdb -s /var/tmp/to_scwrl_1566142156.seq -o /var/tmp/from_scwrl_1566142156.pdb > /var/tmp/scwrl_1566142156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566142156.pdb Number of alignments=1521 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLD 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAG T0506 48 :VS 2iabA 33 :AD T0506 50 :GYPYTTATNIGIE 2iabA 36 :GAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR T0506 157 :GPARN 2iabA 139 :LSGRE T0506 217 :IDPDGIDLAS 2iabA 144 :LMRDGEWLVT Number of specific fragments extracted= 12 number of extra gaps= 1 total=12149 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_733862642.pdb -s /var/tmp/to_scwrl_733862642.seq -o /var/tmp/from_scwrl_733862642.pdb > /var/tmp/scwrl_733862642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_733862642.pdb Number of alignments=1522 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)S216 because last residue in template chain is (2iabA)D154 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAG T0506 48 :VS 2iabA 33 :AD T0506 50 :GYPYTTATNIGIE 2iabA 36 :GAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR T0506 157 :GPARNAS 2iabA 139 :LSGRELM T0506 208 :KTGRWKIT 2iabA 146 :RDGEWLVT Number of specific fragments extracted= 12 number of extra gaps= 1 total=12161 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_147161644.pdb -s /var/tmp/to_scwrl_147161644.seq -o /var/tmp/from_scwrl_147161644.pdb > /var/tmp/scwrl_147161644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_147161644.pdb Number of alignments=1523 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :K 2iabA 110 :G T0506 134 :KLYLSL 2iabA 111 :FDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLAS 2iabA 139 :LSGRELMR T0506 229 :DLARL 2iabA 149 :EWLVT Number of specific fragments extracted= 12 number of extra gaps= 1 total=12173 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1077788055.pdb -s /var/tmp/to_scwrl_1077788055.seq -o /var/tmp/from_scwrl_1077788055.pdb > /var/tmp/scwrl_1077788055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077788055.pdb Number of alignments=1524 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIG T0506 95 :GKG 2iabA 78 :PTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :KAKLYLSLPD 2iabA 110 :GFDPRRLTTS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR T0506 157 :GPARNA 2iabA 139 :LSGREL T0506 218 :DPDGIDLAS 2iabA 145 :MRDGEWLVT Number of specific fragments extracted= 9 number of extra gaps= 1 total=12182 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_936240621.pdb -s /var/tmp/to_scwrl_936240621.seq -o /var/tmp/from_scwrl_936240621.pdb > /var/tmp/scwrl_936240621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_936240621.pdb Number of alignments=1525 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR T0506 157 :GPARNAS 2iabA 139 :LSGRELM T0506 175 :SGAEELM 2iabA 146 :RDGEWLV Number of specific fragments extracted= 10 number of extra gaps= 1 total=12192 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1128670505.pdb -s /var/tmp/to_scwrl_1128670505.seq -o /var/tmp/from_scwrl_1128670505.pdb > /var/tmp/scwrl_1128670505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128670505.pdb Number of alignments=1526 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASDL 2iabA 139 :LSGRELMRDGEW Number of specific fragments extracted= 10 number of extra gaps= 1 total=12202 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_621695987.pdb -s /var/tmp/to_scwrl_621695987.seq -o /var/tmp/from_scwrl_621695987.pdb > /var/tmp/scwrl_621695987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_621695987.pdb Number of alignments=1527 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIG 2iabA 81 :DLVLVEGTALPLE T0506 116 :PDEVPLAIARY 2iabA 99 :DGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASDL 2iabA 139 :LSGRELMRDGEW Number of specific fragments extracted= 10 number of extra gaps= 1 total=12212 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_414175143.pdb -s /var/tmp/to_scwrl_414175143.seq -o /var/tmp/from_scwrl_414175143.pdb > /var/tmp/scwrl_414175143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414175143.pdb Number of alignments=1528 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASDLARL 2iabA 139 :LSGRELMRDGEWLVT Number of specific fragments extracted= 10 number of extra gaps= 1 total=12222 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1982816273.pdb -s /var/tmp/to_scwrl_1982816273.seq -o /var/tmp/from_scwrl_1982816273.pdb > /var/tmp/scwrl_1982816273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1982816273.pdb Number of alignments=1529 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGP 2iabA 81 :DLVLVEGTALPLEP T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :KAKLYLSLPD 2iabA 110 :GFDPRRLTTS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASDLARL 2iabA 139 :LSGRELMRDGEWLVT Number of specific fragments extracted= 9 number of extra gaps= 1 total=12231 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1399231909.pdb -s /var/tmp/to_scwrl_1399231909.seq -o /var/tmp/from_scwrl_1399231909.pdb > /var/tmp/scwrl_1399231909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399231909.pdb Number of alignments=1530 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE T0506 162 :ASNITPADLR 2iabA 136 :ANELSGRELM Number of specific fragments extracted= 10 number of extra gaps= 1 total=12241 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2068888032.pdb -s /var/tmp/to_scwrl_2068888032.seq -o /var/tmp/from_scwrl_2068888032.pdb > /var/tmp/scwrl_2068888032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2068888032.pdb Number of alignments=1531 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 20 :AGAPFEAVRVARDVLHTSRT 2iabA 3 :TPPARTAKQRIQDTLNRLEL T0506 40 :AALATLDPVSGYPYTTATNIGIE 2iabA 26 :AWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGPTRDL T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 83 :VLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW Number of specific fragments extracted= 5 number of extra gaps= 1 total=12246 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_192411345.pdb -s /var/tmp/to_scwrl_192411345.seq -o /var/tmp/from_scwrl_192411345.pdb > /var/tmp/scwrl_192411345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_192411345.pdb Number of alignments=1532 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 22 :APFEAVRVARDVLHTSRT 2iabA 5 :PARTAKQRIQDTLNRLEL T0506 40 :AALATLDPVSGYPYTTATNIGIE 2iabA 26 :AWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE T0506 162 :ASNITPAD 2iabA 136 :ANELSGRE Number of specific fragments extracted= 9 number of extra gaps= 1 total=12255 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_535373479.pdb -s /var/tmp/to_scwrl_535373479.seq -o /var/tmp/from_scwrl_535373479.pdb > /var/tmp/scwrl_535373479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535373479.pdb Number of alignments=1533 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 18 :PSAGAPFEAVRVARDVLHTSRTAALATLD 2iabA 4 :PPARTAKQRIQDTLNRLELDVDAWVSTAG T0506 48 :VS 2iabA 33 :AD T0506 50 :GYPYTTATNIGIE 2iabA 36 :GAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR Number of specific fragments extracted= 10 number of extra gaps= 1 total=12265 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1540842739.pdb -s /var/tmp/to_scwrl_1540842739.seq -o /var/tmp/from_scwrl_1540842739.pdb > /var/tmp/scwrl_1540842739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1540842739.pdb Number of alignments=1534 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EP 2iabA 4 :PP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLD 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAG T0506 48 :VS 2iabA 33 :AD T0506 50 :GYPYTTATNIGIE 2iabA 36 :GAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIGPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW Number of specific fragments extracted= 10 number of extra gaps= 1 total=12275 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1708138129.pdb -s /var/tmp/to_scwrl_1708138129.seq -o /var/tmp/from_scwrl_1708138129.pdb > /var/tmp/scwrl_1708138129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1708138129.pdb Number of alignments=1535 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :K 2iabA 110 :G T0506 134 :KLYLSL 2iabA 111 :FDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE Number of specific fragments extracted= 10 number of extra gaps= 1 total=12285 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_863359314.pdb -s /var/tmp/to_scwrl_863359314.seq -o /var/tmp/from_scwrl_863359314.pdb > /var/tmp/scwrl_863359314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863359314.pdb Number of alignments=1536 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLA 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGIG T0506 95 :GKG 2iabA 78 :PTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :KAKLYLSLPD 2iabA 110 :GFDPRRLTTS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR Number of specific fragments extracted= 8 number of extra gaps= 1 total=12293 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_889201263.pdb -s /var/tmp/to_scwrl_889201263.seq -o /var/tmp/from_scwrl_889201263.pdb > /var/tmp/scwrl_889201263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_889201263.pdb Number of alignments=1537 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EP 2iabA 4 :PP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR Number of specific fragments extracted= 9 number of extra gaps= 1 total=12302 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1944970446.pdb -s /var/tmp/to_scwrl_1944970446.seq -o /var/tmp/from_scwrl_1944970446.pdb > /var/tmp/scwrl_1944970446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1944970446.pdb Number of alignments=1538 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASD 2iabA 139 :LSGRELMRDGE Number of specific fragments extracted= 10 number of extra gaps= 1 total=12312 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1031759228.pdb -s /var/tmp/to_scwrl_1031759228.seq -o /var/tmp/from_scwrl_1031759228.pdb > /var/tmp/scwrl_1031759228.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031759228.pdb Number of alignments=1539 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIG 2iabA 81 :DLVLVEGTALPLE T0506 116 :PDEVPLAIARY 2iabA 99 :DGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE T0506 219 :PDGIDLASASDL 2iabA 139 :LSGRELMRDGEW Number of specific fragments extracted= 10 number of extra gaps= 1 total=12322 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1452865005.pdb -s /var/tmp/to_scwrl_1452865005.seq -o /var/tmp/from_scwrl_1452865005.pdb > /var/tmp/scwrl_1452865005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452865005.pdb Number of alignments=1540 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGPDE 2iabA 81 :DLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 133 :AKLYLSL 2iabA 110 :GFDPRRL T0506 140 :PD 2iabA 118 :TS T0506 144 :LYRLRTEGVQINGGPAR 2iabA 122 :YFRISPRRVQAWREANE Number of specific fragments extracted= 9 number of extra gaps= 1 total=12331 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2108841707.pdb -s /var/tmp/to_scwrl_2108841707.seq -o /var/tmp/from_scwrl_2108841707.pdb > /var/tmp/scwrl_2108841707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108841707.pdb Number of alignments=1541 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 16 :IEP 2iabA 3 :TPP T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIE 2iabA 6 :ARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2iabA 49 :GETFLVATPAASPTGRNLSETGRVRLGI T0506 94 :FGKG 2iabA 77 :GPTR T0506 103 :PRLTLVGRADRIGP 2iabA 81 :DLVLVEGTALPLEP T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :KAKLYLSLPD 2iabA 110 :GFDPRRLTTS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE Number of specific fragments extracted= 8 number of extra gaps= 1 total=12339 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1515806870.pdb -s /var/tmp/to_scwrl_1515806870.seq -o /var/tmp/from_scwrl_1515806870.pdb > /var/tmp/scwrl_1515806870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1515806870.pdb Number of alignments=1542 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQI 2iabA 122 :YFRISPRRVQA T0506 163 :SNITPADL 2iabA 133 :WREANELS T0506 221 :GIDLASASDLARL 2iabA 141 :GRELMRDGEWLVT Number of specific fragments extracted= 6 number of extra gaps= 1 total=12345 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_731831387.pdb -s /var/tmp/to_scwrl_731831387.seq -o /var/tmp/from_scwrl_731831387.pdb > /var/tmp/scwrl_731831387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731831387.pdb Number of alignments=1543 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)S216 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW T0506 196 :GEASRLAVLAGAKTGRWKIT 2iabA 134 :REANELSGRELMRDGEWLVT Number of specific fragments extracted= 5 number of extra gaps= 1 total=12350 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1519103472.pdb -s /var/tmp/to_scwrl_1519103472.seq -o /var/tmp/from_scwrl_1519103472.pdb > /var/tmp/scwrl_1519103472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1519103472.pdb Number of alignments=1544 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 16 :IEPSAGAPFEAVRVA 2iabA 3 :TPPARTAKQRIQDTL T0506 32 :DVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 18 :NRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW T0506 164 :NITPAD 2iabA 134 :REANEL T0506 220 :DGIDLASASDLARL 2iabA 140 :SGRELMRDGEWLVT Number of specific fragments extracted= 7 number of extra gaps= 1 total=12357 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1002373012.pdb -s /var/tmp/to_scwrl_1002373012.seq -o /var/tmp/from_scwrl_1002373012.pdb > /var/tmp/scwrl_1002373012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1002373012.pdb Number of alignments=1545 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEP 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDG T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2iabA 52 :FLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQ 2iabA 122 :YFRISPRRVQ T0506 162 :ASNITPADL 2iabA 132 :AWREANELS T0506 221 :GIDLASASDLARL 2iabA 141 :GRELMRDGEWLVT Number of specific fragments extracted= 6 number of extra gaps= 1 total=12363 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2107768933.pdb -s /var/tmp/to_scwrl_2107768933.seq -o /var/tmp/from_scwrl_2107768933.pdb > /var/tmp/scwrl_2107768933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107768933.pdb Number of alignments=1546 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAP 2iabA 51 :TFLVATPAASPTGRNLSETGRVRLGIGP T0506 101 :TLPRLTLVGRADRIGPDE 2iabA 79 :TRDLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :KAKL 2iabA 110 :GFDP T0506 139 :LPD 2iabA 117 :TTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW T0506 164 :NITPAD 2iabA 134 :REANEL T0506 220 :DGIDLASASDLARL 2iabA 140 :SGRELMRDGEWLVT Number of specific fragments extracted= 9 number of extra gaps= 1 total=12372 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_53097763.pdb -s /var/tmp/to_scwrl_53097763.seq -o /var/tmp/from_scwrl_53097763.pdb > /var/tmp/scwrl_53097763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53097763.pdb Number of alignments=1547 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2iabA 51 :TFLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQ 2iabA 122 :YFRISPRRVQ T0506 162 :ASNITPAD 2iabA 132 :AWREANEL T0506 220 :DGIDLASASDLARL 2iabA 140 :SGRELMRDGEWLVT Number of specific fragments extracted= 6 number of extra gaps= 1 total=12378 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1401381240.pdb -s /var/tmp/to_scwrl_1401381240.seq -o /var/tmp/from_scwrl_1401381240.pdb > /var/tmp/scwrl_1401381240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1401381240.pdb Number of alignments=1548 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQ 2iabA 122 :YFRISPRRVQ T0506 162 :ASNITPAD 2iabA 132 :AWREANEL T0506 220 :DGIDLASASDLARL 2iabA 140 :SGRELMRDGEWLVT Number of specific fragments extracted= 6 number of extra gaps= 1 total=12384 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1199884528.pdb -s /var/tmp/to_scwrl_1199884528.seq -o /var/tmp/from_scwrl_1199884528.pdb > /var/tmp/scwrl_1199884528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199884528.pdb Number of alignments=1549 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDE 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARYPK 2iabA 98 :PDGVGDTFAEKTGF T0506 134 :KLY 2iabA 112 :DPR T0506 139 :LPD 2iabA 117 :TTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW T0506 164 :NITPA 2iabA 134 :REANE T0506 219 :PDGIDLASASDLARL 2iabA 139 :LSGRELMRDGEWLVT Number of specific fragments extracted= 9 number of extra gaps= 1 total=12393 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_794665358.pdb -s /var/tmp/to_scwrl_794665358.seq -o /var/tmp/from_scwrl_794665358.pdb > /var/tmp/scwrl_794665358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794665358.pdb Number of alignments=1550 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEP 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDG T0506 66 :TPFFFAA 2iabA 50 :ETFLVAT T0506 73 :GLTLHARNMETDARISVTLA 2iabA 58 :AASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDE 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :KAKLYLSLPD 2iabA 110 :GFDPRRLTTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW T0506 164 :NITPAD 2iabA 134 :REANEL T0506 220 :DGIDLASASDLARL 2iabA 140 :SGRELMRDGEWLVT Number of specific fragments extracted= 9 number of extra gaps= 1 total=12402 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1481430591.pdb -s /var/tmp/to_scwrl_1481430591.seq -o /var/tmp/from_scwrl_1481430591.pdb > /var/tmp/scwrl_1481430591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481430591.pdb Number of alignments=1551 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2iabA 51 :TFLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDE 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 119 :VPLAIARY 2iabA 102 :GDTFAEKT T0506 134 :KLYLSLPD 2iabA 112 :DPRRLTTS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE T0506 168 :AD 2iabA 136 :AN T0506 218 :DPDGIDLASASDLARL 2iabA 138 :ELSGRELMRDGEWLVT Number of specific fragments extracted= 8 number of extra gaps= 1 total=12410 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_618543038.pdb -s /var/tmp/to_scwrl_618543038.seq -o /var/tmp/from_scwrl_618543038.pdb > /var/tmp/scwrl_618543038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_618543038.pdb Number of alignments=1552 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDG 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGET T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2iabA 52 :FLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQING 2iabA 122 :YFRISPRRVQAWR T0506 165 :ITPA 2iabA 135 :EANE T0506 219 :PDGIDLASASDLARL 2iabA 139 :LSGRELMRDGEWLVT Number of specific fragments extracted= 6 number of extra gaps= 1 total=12416 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1528527999.pdb -s /var/tmp/to_scwrl_1528527999.seq -o /var/tmp/from_scwrl_1528527999.pdb > /var/tmp/scwrl_1528527999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1528527999.pdb Number of alignments=1553 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 Warning: unaligning (T0506)W234 because last residue in template chain is (2iabA)D154 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQ 2iabA 122 :YFRISPRRVQ T0506 162 :ASNITPAD 2iabA 132 :AWREANEL T0506 220 :DGIDLASASDLARL 2iabA 140 :SGRELMRDGEWLVT Number of specific fragments extracted= 6 number of extra gaps= 1 total=12422 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1628592235.pdb -s /var/tmp/to_scwrl_1628592235.seq -o /var/tmp/from_scwrl_1628592235.pdb > /var/tmp/scwrl_1628592235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628592235.pdb Number of alignments=1554 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 20 :LELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGV 2iabA 122 :YFRISPRRV Number of specific fragments extracted= 4 number of extra gaps= 1 total=12426 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1696331093.pdb -s /var/tmp/to_scwrl_1696331093.seq -o /var/tmp/from_scwrl_1696331093.pdb > /var/tmp/scwrl_1696331093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1696331093.pdb Number of alignments=1555 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 20 :LELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGV 2iabA 122 :YFRISPRRV Number of specific fragments extracted= 4 number of extra gaps= 1 total=12430 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_317284973.pdb -s /var/tmp/to_scwrl_317284973.seq -o /var/tmp/from_scwrl_317284973.pdb > /var/tmp/scwrl_317284973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_317284973.pdb Number of alignments=1556 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 35 :HTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 21 :ELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIAR 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGD Number of specific fragments extracted= 3 number of extra gaps= 0 total=12433 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_609779094.pdb -s /var/tmp/to_scwrl_609779094.seq -o /var/tmp/from_scwrl_609779094.pdb > /var/tmp/scwrl_609779094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609779094.pdb Number of alignments=1557 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 32 :DVLHTSRTAALATLDPVSGYPYTTATNIGIEP 2iabA 18 :NRLELDVDAWVSTAGADGGAPYLVPLSYLWDG T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2iabA 52 :FLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQI 2iabA 122 :YFRISPRRVQA Number of specific fragments extracted= 4 number of extra gaps= 1 total=12437 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_170543433.pdb -s /var/tmp/to_scwrl_170543433.seq -o /var/tmp/from_scwrl_170543433.pdb > /var/tmp/scwrl_170543433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_170543433.pdb Number of alignments=1558 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIGIEPD 2iabA 20 :LELDVDAWVSTAGADGGAPYLVPLSYLWDGE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAP 2iabA 51 :TFLVATPAASPTGRNLSETGRVRLGIGP T0506 101 :TLPRLTLVGRADRIGPDE 2iabA 79 :TRDLVLVEGTALPLEPAG T0506 120 :P 2iabA 98 :P Number of specific fragments extracted= 4 number of extra gaps= 0 total=12441 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_731460116.pdb -s /var/tmp/to_scwrl_731460116.seq -o /var/tmp/from_scwrl_731460116.pdb > /var/tmp/scwrl_731460116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731460116.pdb Number of alignments=1559 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 26 :AVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2iabA 12 :RIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2iabA 51 :TFLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW Number of specific fragments extracted= 4 number of extra gaps= 1 total=12445 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_445111720.pdb -s /var/tmp/to_scwrl_445111720.seq -o /var/tmp/from_scwrl_445111720.pdb > /var/tmp/scwrl_445111720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_445111720.pdb Number of alignments=1560 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 20 :LELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQI 2iabA 122 :YFRISPRRVQA Number of specific fragments extracted= 4 number of extra gaps= 1 total=12449 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1569775342.pdb -s /var/tmp/to_scwrl_1569775342.seq -o /var/tmp/from_scwrl_1569775342.pdb > /var/tmp/scwrl_1569775342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569775342.pdb Number of alignments=1561 # 2iabA read from all-align.a2m # found chain 2iabA in template set T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 20 :LELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDE 2iabA 78 :PTRDLVLVEGTALPLEPAG Number of specific fragments extracted= 3 number of extra gaps= 0 total=12452 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_652864502.pdb -s /var/tmp/to_scwrl_652864502.seq -o /var/tmp/from_scwrl_652864502.pdb > /var/tmp/scwrl_652864502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_652864502.pdb Number of alignments=1562 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEP 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDG T0506 66 :TPFFFAA 2iabA 50 :ETFLVAT T0506 73 :GLTLHARNMETDARISVTLA 2iabA 58 :AASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDE 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 119 :VPLAIARYIARY 2iabA 98 :PDGVGDTFAEKT T0506 132 :KAKLYLSLPD 2iabA 110 :GFDPRRLTTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW Number of specific fragments extracted= 7 number of extra gaps= 1 total=12459 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_637523066.pdb -s /var/tmp/to_scwrl_637523066.seq -o /var/tmp/from_scwrl_637523066.pdb > /var/tmp/scwrl_637523066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637523066.pdb Number of alignments=1563 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (2iabA)T2 Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2iabA 3 :TPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2iabA 51 :TFLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDE 2iabA 78 :PTRDLVLVEGTALPLEPAG T0506 119 :VPLAIARY 2iabA 102 :GDTFAEKT T0506 134 :KLYLSLPD 2iabA 112 :DPRRLTTS T0506 144 :LYRLRTEGVQINGG 2iabA 122 :YFRISPRRVQAWRE T0506 168 :AD 2iabA 136 :AN T0506 218 :DPDGIDLASASDLA 2iabA 138 :ELSGRELMRDGEWL Number of specific fragments extracted= 8 number of extra gaps= 1 total=12467 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2105148822.pdb -s /var/tmp/to_scwrl_2105148822.seq -o /var/tmp/from_scwrl_2105148822.pdb > /var/tmp/scwrl_2105148822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2105148822.pdb Number of alignments=1564 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 26 :AVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDG 2iabA 12 :RIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGET T0506 67 :PFFFAAGLTLHARNMETDARISVTLA 2iabA 52 :FLVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQIN 2iabA 122 :YFRISPRRVQAW Number of specific fragments extracted= 4 number of extra gaps= 1 total=12471 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_46223594.pdb -s /var/tmp/to_scwrl_46223594.seq -o /var/tmp/from_scwrl_46223594.pdb > /var/tmp/scwrl_46223594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46223594.pdb Number of alignments=1565 # 2iabA read from all-align.a2m # found chain 2iabA in template set Warning: unaligning (T0506)T142 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2iabA)L121 Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2iabA)L121 T0506 21 :GAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2iabA 7 :RTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETF T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2iabA 53 :LVATPAASPTGRNLSETGRVRLGIG T0506 100 :LTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 2iabA 78 :PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTS T0506 144 :LYRLRTEGVQ 2iabA 122 :YFRISPRRVQ T0506 162 :ASNITPAD 2iabA 132 :AWREANEL T0506 220 :DGIDLASASDL 2iabA 140 :SGRELMRDGEW Number of specific fragments extracted= 6 number of extra gaps= 1 total=12477 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_198177548.pdb -s /var/tmp/to_scwrl_198177548.seq -o /var/tmp/from_scwrl_198177548.pdb > /var/tmp/scwrl_198177548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198177548.pdb Number of alignments=1566 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2ig6A)H-11 T0506 20 :AGAPFEAVRV 2ig6A -10 :HHHHENLYFQ T0506 30 :ARDVLHTSRTAALATLD 2ig6A 4 :ALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDE 2ig6A 68 :GQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPD 2ig6A 85 :VKELALEAVPSLKNMYSVDD T0506 210 :GRWKITSIDPDGIDLASASDL 2ig6A 105 :GIFAVLYFTKGEGTICSFKGE T0506 250 :AQLLK 2ig6A 126 :NETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12484 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_821024489.pdb -s /var/tmp/to_scwrl_821024489.seq -o /var/tmp/from_scwrl_821024489.pdb > /var/tmp/scwrl_821024489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821024489.pdb Number of alignments=1567 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2ig6A)H-11 T0506 20 :AGAPFEA 2ig6A -10 :HHHHENL T0506 27 :VRVARDVLHTSRTAALATLD 2ig6A 1 :MKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDE 2ig6A 68 :GQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPD 2ig6A 85 :VKELALEAVPSLKNMYSVDD T0506 228 :SDL 2ig6A 105 :GIF T0506 251 :QLLK 2ig6A 127 :ETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12491 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_935424857.pdb -s /var/tmp/to_scwrl_935424857.seq -o /var/tmp/from_scwrl_935424857.pdb > /var/tmp/scwrl_935424857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_935424857.pdb Number of alignments=1568 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 30 :ARDVLHTSRTAALATLD 2ig6A 4 :ALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYI 2ig6A 68 :GQWIRLTGEVANDDRREVKELALEAV T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQINGGP 2ig6A 94 :PSLKNMYSVDDGIFAVLYFTKGEGTICSFK Number of specific fragments extracted= 4 number of extra gaps= 0 total=12495 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2143147994.pdb -s /var/tmp/to_scwrl_2143147994.seq -o /var/tmp/from_scwrl_2143147994.pdb > /var/tmp/scwrl_2143147994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143147994.pdb Number of alignments=1569 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 30 :ARDVLHTSRTAALATLD 2ig6A 4 :ALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDE 2ig6A 68 :GQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLY 2ig6A 85 :VKELALEAVPSLKNM T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2ig6A 102 :VDDGIFAVLYFTKGEGTICSFKGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=12500 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1852783717.pdb -s /var/tmp/to_scwrl_1852783717.seq -o /var/tmp/from_scwrl_1852783717.pdb > /var/tmp/scwrl_1852783717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1852783717.pdb Number of alignments=1570 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)T166 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAK 2ig6A 68 :GQWIRLTGEVANDDRREVKELALEAVPSLKNMY T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNI 2ig6A 101 :SVDDGIFAVLYFTKGEGTICSFKGENETFS Number of specific fragments extracted= 4 number of extra gaps= 0 total=12504 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_240806216.pdb -s /var/tmp/to_scwrl_240806216.seq -o /var/tmp/from_scwrl_240806216.pdb > /var/tmp/scwrl_240806216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_240806216.pdb Number of alignments=1571 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAK 2ig6A 68 :GQWIRLTGEVANDDRREVKELALEAVPSLKNMY T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNAS 2ig6A 101 :SVDDGIFAVLYFTKGEGTICSFKGENET Number of specific fragments extracted= 4 number of extra gaps= 0 total=12508 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2104506055.pdb -s /var/tmp/to_scwrl_2104506055.seq -o /var/tmp/from_scwrl_2104506055.pdb > /var/tmp/scwrl_2104506055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2104506055.pdb Number of alignments=1572 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 32 :DVLHTSRTAALATLD 2ig6A 6 :EFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDEV 2ig6A 68 :GQWIRLTGEVANDDRREV Number of specific fragments extracted= 3 number of extra gaps= 0 total=12511 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1221106940.pdb -s /var/tmp/to_scwrl_1221106940.seq -o /var/tmp/from_scwrl_1221106940.pdb > /var/tmp/scwrl_1221106940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1221106940.pdb Number of alignments=1573 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 26 :AVRVARDVLHTSRTAALATLD 2ig6A 0 :GMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAK 2ig6A 68 :GQWIRLTGEVANDDRREVKELALEAVPSLKNMY T0506 136 :YLSLPDTRLYRL 2ig6A 101 :SVDDGIFAVLYF Number of specific fragments extracted= 4 number of extra gaps= 0 total=12515 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_972637603.pdb -s /var/tmp/to_scwrl_972637603.seq -o /var/tmp/from_scwrl_972637603.pdb > /var/tmp/scwrl_972637603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972637603.pdb Number of alignments=1574 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 53 :YTTATNIGIEPDGTPF 2ig6A 14 :FYLATNEGDQPRVRPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=12516 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=12516 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGTKIE 2ig6A -10 :HHHHENLYFQ T0506 26 :AVRVARDVLHTSRTAALATL 2ig6A 0 :GMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12523 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1476125880.pdb -s /var/tmp/to_scwrl_1476125880.seq -o /var/tmp/from_scwrl_1476125880.pdb > /var/tmp/scwrl_1476125880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1476125880.pdb Number of alignments=1575 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGTKIEP 2ig6A -10 :HHHHENLYFQG T0506 27 :VRVARDVLHTSRTAALATL 2ig6A 1 :MKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVG 2ig6A 69 :QWIRLTG T0506 113 :RIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 76 :EVANDDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12530 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_75996305.pdb -s /var/tmp/to_scwrl_75996305.seq -o /var/tmp/from_scwrl_75996305.pdb > /var/tmp/scwrl_75996305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75996305.pdb Number of alignments=1576 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGTKIEP 2ig6A -10 :HHHHENLYFQG T0506 27 :VRVARDVLHTSRTAALATL 2ig6A 1 :MKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRA 2ig6A 69 :QWIRLTGEV T0506 115 :GPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 78 :ANDDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12537 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_932922890.pdb -s /var/tmp/to_scwrl_932922890.seq -o /var/tmp/from_scwrl_932922890.pdb > /var/tmp/scwrl_932922890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_932922890.pdb Number of alignments=1577 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGTK 2ig6A -10 :HHHHENLY T0506 24 :FEAVRVARDVLHTSRTAALATL 2ig6A -2 :FQGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADR 2ig6A 69 :QWIRLTGEVAN T0506 117 :DEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 80 :DDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12544 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1529223644.pdb -s /var/tmp/to_scwrl_1529223644.seq -o /var/tmp/from_scwrl_1529223644.pdb > /var/tmp/scwrl_1529223644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1529223644.pdb Number of alignments=1578 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPR 2ig6A -10 :HHHHE T0506 21 :GAPFEAVRVARDVLHTSRTAALATLD 2ig6A -5 :NLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADR 2ig6A 69 :QWIRLTGEVAN T0506 117 :DEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 80 :DDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12551 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1477377545.pdb -s /var/tmp/to_scwrl_1477377545.seq -o /var/tmp/from_scwrl_1477377545.pdb > /var/tmp/scwrl_1477377545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1477377545.pdb Number of alignments=1579 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGT 2ig6A -10 :HHHHENL T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2ig6A -3 :YFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 97 :G 2ig6A 68 :G T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12558 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2132807418.pdb -s /var/tmp/to_scwrl_2132807418.seq -o /var/tmp/from_scwrl_2132807418.pdb > /var/tmp/scwrl_2132807418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2132807418.pdb Number of alignments=1580 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGTK 2ig6A -10 :HHHHENLY T0506 24 :FEAVRVARDVLHTSRTAALATL 2ig6A -2 :FQGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :FGKG 2ig6A 65 :NKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12565 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_176405355.pdb -s /var/tmp/to_scwrl_176405355.seq -o /var/tmp/from_scwrl_176405355.pdb > /var/tmp/scwrl_176405355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176405355.pdb Number of alignments=1581 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGT 2ig6A -10 :HHHHENL T0506 23 :PFEAVRVARDVLHTSRTAALATL 2ig6A -3 :YFQGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12572 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_811324490.pdb -s /var/tmp/to_scwrl_811324490.seq -o /var/tmp/from_scwrl_811324490.pdb > /var/tmp/scwrl_811324490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_811324490.pdb Number of alignments=1582 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGT 2ig6A -10 :HHHHENL T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2ig6A -3 :YFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12579 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_603866809.pdb -s /var/tmp/to_scwrl_603866809.seq -o /var/tmp/from_scwrl_603866809.pdb > /var/tmp/scwrl_603866809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_603866809.pdb Number of alignments=1583 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 10 :TPRG 2ig6A -10 :HHHH T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTAT 2ig6A 21 :GDQPRVRPF T0506 58 :NIGIE 2ig6A 31 :AVFEY T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 36 :EGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 9 number of extra gaps= 0 total=12588 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1704933354.pdb -s /var/tmp/to_scwrl_1704933354.seq -o /var/tmp/from_scwrl_1704933354.pdb > /var/tmp/scwrl_1704933354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704933354.pdb Number of alignments=1584 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRGTK 2ig6A -10 :HHHHENLY T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12595 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_292433078.pdb -s /var/tmp/to_scwrl_292433078.seq -o /var/tmp/from_scwrl_292433078.pdb > /var/tmp/scwrl_292433078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_292433078.pdb Number of alignments=1585 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)P167 because last residue in template chain is (2ig6A)L131 T0506 8 :VITPRG 2ig6A -10 :HHHHEN T0506 22 :APFEAVRVARDVLHTSRTAALATLD 2ig6A -4 :LYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNIT 2ig6A 120 :CSFKGENETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12602 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_152714255.pdb -s /var/tmp/to_scwrl_152714255.seq -o /var/tmp/from_scwrl_152714255.pdb > /var/tmp/scwrl_152714255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152714255.pdb Number of alignments=1586 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 12 :R 2ig6A -6 :E T0506 21 :GAPFEAVRVARDVLHTSRTAALATL 2ig6A -5 :NLYFQGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPAR 2ig6A 120 :CSFKG Number of specific fragments extracted= 7 number of extra gaps= 0 total=12609 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2022218327.pdb -s /var/tmp/to_scwrl_2022218327.seq -o /var/tmp/from_scwrl_2022218327.pdb > /var/tmp/scwrl_2022218327.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022218327.pdb Number of alignments=1587 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 27 :VRVARDVLHTSRTAALATL 2ig6A 1 :MKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVG 2ig6A 69 :QWIRLTG T0506 113 :RIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 76 :EVANDDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT Number of specific fragments extracted= 5 number of extra gaps= 0 total=12614 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_902212172.pdb -s /var/tmp/to_scwrl_902212172.seq -o /var/tmp/from_scwrl_902212172.pdb > /var/tmp/scwrl_902212172.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902212172.pdb Number of alignments=1588 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 24 :FEAVRVARDVLHTSRTAALATL 2ig6A -2 :FQGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRA 2ig6A 69 :QWIRLTGEV T0506 115 :GPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 78 :ANDDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGP 2ig6A 120 :CSF Number of specific fragments extracted= 6 number of extra gaps= 0 total=12620 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_323257688.pdb -s /var/tmp/to_scwrl_323257688.seq -o /var/tmp/from_scwrl_323257688.pdb > /var/tmp/scwrl_323257688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323257688.pdb Number of alignments=1589 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATL 2ig6A -1 :QGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADR 2ig6A 69 :QWIRLTGEVAN T0506 117 :DEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 80 :DDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT Number of specific fragments extracted= 5 number of extra gaps= 0 total=12625 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_606194797.pdb -s /var/tmp/to_scwrl_606194797.seq -o /var/tmp/from_scwrl_606194797.pdb > /var/tmp/scwrl_606194797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_606194797.pdb Number of alignments=1590 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2ig6A -1 :QGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADR 2ig6A 69 :QWIRLTGEVAN T0506 117 :DEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 80 :DDRREVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT Number of specific fragments extracted= 5 number of extra gaps= 0 total=12630 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1347323891.pdb -s /var/tmp/to_scwrl_1347323891.seq -o /var/tmp/from_scwrl_1347323891.pdb > /var/tmp/scwrl_1347323891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1347323891.pdb Number of alignments=1591 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2ig6A -1 :QGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK T0506 97 :G 2ig6A 68 :G T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPAR 2ig6A 120 :CSFKG Number of specific fragments extracted= 6 number of extra gaps= 0 total=12636 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1893033030.pdb -s /var/tmp/to_scwrl_1893033030.seq -o /var/tmp/from_scwrl_1893033030.pdb > /var/tmp/scwrl_1893033030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1893033030.pdb Number of alignments=1592 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATL 2ig6A -1 :QGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :FGKG 2ig6A 65 :NKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPAR 2ig6A 120 :CSFKG Number of specific fragments extracted= 6 number of extra gaps= 0 total=12642 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1259059298.pdb -s /var/tmp/to_scwrl_1259059298.seq -o /var/tmp/from_scwrl_1259059298.pdb > /var/tmp/scwrl_1259059298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259059298.pdb Number of alignments=1593 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 21 :GAPFEAVRVARDVLHTSRTAALATL 2ig6A -5 :NLYFQGMKRALEFLKECGVFYLATN T0506 48 :VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 20 :EGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPAR 2ig6A 120 :CSFKG Number of specific fragments extracted= 6 number of extra gaps= 0 total=12648 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1984846957.pdb -s /var/tmp/to_scwrl_1984846957.seq -o /var/tmp/from_scwrl_1984846957.pdb > /var/tmp/scwrl_1984846957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1984846957.pdb Number of alignments=1594 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASNI 2ig6A 120 :CSFKGENETF Number of specific fragments extracted= 6 number of extra gaps= 0 total=12654 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1850698205.pdb -s /var/tmp/to_scwrl_1850698205.seq -o /var/tmp/from_scwrl_1850698205.pdb > /var/tmp/scwrl_1850698205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1850698205.pdb Number of alignments=1595 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2ig6A)H-11 T0506 10 :TPRG 2ig6A -10 :HHHH T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTAT 2ig6A 21 :GDQPRVRPF T0506 58 :NIGIE 2ig6A 31 :AVFEY T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 36 :EGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNASN 2ig6A 120 :CSFKGENET Number of specific fragments extracted= 9 number of extra gaps= 0 total=12663 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1305282892.pdb -s /var/tmp/to_scwrl_1305282892.seq -o /var/tmp/from_scwrl_1305282892.pdb > /var/tmp/scwrl_1305282892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305282892.pdb Number of alignments=1596 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2ig6A -1 :QGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPARNAS 2ig6A 120 :CSFKGENE Number of specific fragments extracted= 6 number of extra gaps= 0 total=12669 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_35540859.pdb -s /var/tmp/to_scwrl_35540859.seq -o /var/tmp/from_scwrl_35540859.pdb > /var/tmp/scwrl_35540859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_35540859.pdb Number of alignments=1597 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2ig6A -1 :QGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISG T0506 93 :PFGKG 2ig6A 64 :MNKKG T0506 103 :PRLTLVGRADRIGP 2ig6A 69 :QWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 156 :GGPAR 2ig6A 120 :CSFKG Number of specific fragments extracted= 6 number of extra gaps= 0 total=12675 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_524239048.pdb -s /var/tmp/to_scwrl_524239048.seq -o /var/tmp/from_scwrl_524239048.pdb > /var/tmp/scwrl_524239048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_524239048.pdb Number of alignments=1598 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)L174 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 51 :YPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 23 :QPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGK 2ig6A 63 :GMNKK T0506 102 :LPRLTLVGRADRIGPDE 2ig6A 68 :GQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPADL 2ig6A 111 :YFTKGEGTICSFKGENET T0506 172 :TD 2ig6A 129 :FS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12682 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_93224102.pdb -s /var/tmp/to_scwrl_93224102.seq -o /var/tmp/from_scwrl_93224102.pdb > /var/tmp/scwrl_93224102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93224102.pdb Number of alignments=1599 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)L174 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDAR 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPK T0506 91 :LAPFGKG 2ig6A 59 :VEISGMN T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPADL 2ig6A 111 :YFTKGEGTICSFKGENET T0506 172 :TD 2ig6A 129 :FS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12689 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_31205206.pdb -s /var/tmp/to_scwrl_31205206.seq -o /var/tmp/from_scwrl_31205206.pdb > /var/tmp/scwrl_31205206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31205206.pdb Number of alignments=1600 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)L174 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 95 :GKG 2ig6A 63 :GMN T0506 100 :LTLPRLTLVGRADRIGP 2ig6A 66 :KKGQWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPADL 2ig6A 111 :YFTKGEGTICSFKGENET T0506 172 :TD 2ig6A 129 :FS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12696 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_229539118.pdb -s /var/tmp/to_scwrl_229539118.seq -o /var/tmp/from_scwrl_229539118.pdb > /var/tmp/scwrl_229539118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_229539118.pdb Number of alignments=1601 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)L174 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APF 2ig6A 63 :GMN T0506 100 :LTLPRLTLVGRADRIGPD 2ig6A 66 :KKGQWIRLTGEVANDDRR T0506 121 :LAIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 84 :EVKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPADL 2ig6A 111 :YFTKGEGTICSFKGENET T0506 172 :TD 2ig6A 129 :FS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12703 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_334030318.pdb -s /var/tmp/to_scwrl_334030318.seq -o /var/tmp/from_scwrl_334030318.pdb > /var/tmp/scwrl_334030318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334030318.pdb Number of alignments=1602 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)L174 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :F 2ig6A 65 :N T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPADL 2ig6A 111 :YFTKGEGTICSFKGENET T0506 172 :TD 2ig6A 129 :FS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12710 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2135711261.pdb -s /var/tmp/to_scwrl_2135711261.seq -o /var/tmp/from_scwrl_2135711261.pdb > /var/tmp/scwrl_2135711261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2135711261.pdb Number of alignments=1603 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)E237 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMN T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPA 2ig6A 111 :YFTKGEGTICSFKGEN T0506 231 :A 2ig6A 127 :E T0506 234 :WFA 2ig6A 128 :TFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12717 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1450646058.pdb -s /var/tmp/to_scwrl_1450646058.seq -o /var/tmp/from_scwrl_1450646058.pdb > /var/tmp/scwrl_1450646058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450646058.pdb Number of alignments=1604 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)L174 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMN T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPADL 2ig6A 111 :YFTKGEGTICSFKGENET T0506 172 :TD 2ig6A 129 :FS Number of specific fragments extracted= 6 number of extra gaps= 0 total=12723 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1306667921.pdb -s /var/tmp/to_scwrl_1306667921.seq -o /var/tmp/from_scwrl_1306667921.pdb > /var/tmp/scwrl_1306667921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306667921.pdb Number of alignments=1605 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)L174 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 47 :PVSGYPYTT 2ig6A 23 :QPRVRPFGA T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 32 :VFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGKG 2ig6A 63 :GMNKKG T0506 103 :PRLTLVGRADRIGPDE 2ig6A 69 :QWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPADL 2ig6A 111 :YFTKGEGTICSFKGENET T0506 172 :TD 2ig6A 129 :FS Number of specific fragments extracted= 8 number of extra gaps= 0 total=12731 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1464353495.pdb -s /var/tmp/to_scwrl_1464353495.seq -o /var/tmp/from_scwrl_1464353495.pdb > /var/tmp/scwrl_1464353495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1464353495.pdb Number of alignments=1606 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)E237 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGKG 2ig6A 63 :GMNKKG T0506 103 :PRLTLVGRADRIGPDE 2ig6A 69 :QWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRLRTEGVQI 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVLYFTKGEG T0506 224 :LASASDLARLWFA 2ig6A 118 :TICSFKGENETFS Number of specific fragments extracted= 6 number of extra gaps= 0 total=12737 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1526642363.pdb -s /var/tmp/to_scwrl_1526642363.seq -o /var/tmp/from_scwrl_1526642363.pdb > /var/tmp/scwrl_1526642363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526642363.pdb Number of alignments=1607 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)E237 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGKG 2ig6A 63 :GMNKKG T0506 103 :PRLTLVGRADRIGPD 2ig6A 69 :QWIRLTGEVANDDRR T0506 121 :LAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 84 :EVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 225 :ASASDLARLWFA 2ig6A 119 :ICSFKGENETFS Number of specific fragments extracted= 6 number of extra gaps= 0 total=12743 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_92107164.pdb -s /var/tmp/to_scwrl_92107164.seq -o /var/tmp/from_scwrl_92107164.pdb > /var/tmp/scwrl_92107164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_92107164.pdb Number of alignments=1608 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)E237 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :F 2ig6A 65 :N T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRLRTE 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVLYFT T0506 156 :GGPARNASNITP 2ig6A 114 :KGEGTICSFKGE T0506 232 :RLWFA 2ig6A 126 :NETFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12750 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_846093493.pdb -s /var/tmp/to_scwrl_846093493.seq -o /var/tmp/from_scwrl_846093493.pdb > /var/tmp/scwrl_846093493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_846093493.pdb Number of alignments=1609 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 Warning: unaligning (T0506)E237 because last residue in template chain is (2ig6A)L131 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :F 2ig6A 65 :N T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITP 2ig6A 111 :YFTKGEGTICSFKGE T0506 234 :WFA 2ig6A 128 :TFS Number of specific fragments extracted= 7 number of extra gaps= 0 total=12757 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_856536262.pdb -s /var/tmp/to_scwrl_856536262.seq -o /var/tmp/from_scwrl_856536262.pdb > /var/tmp/scwrl_856536262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_856536262.pdb Number of alignments=1610 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 51 :YPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 23 :QPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGK 2ig6A 63 :GMNKK T0506 102 :LPRLTLVGRADRIGPDE 2ig6A 68 :GQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITP 2ig6A 111 :YFTKGEGTICSFKGE Number of specific fragments extracted= 6 number of extra gaps= 0 total=12763 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_77430935.pdb -s /var/tmp/to_scwrl_77430935.seq -o /var/tmp/from_scwrl_77430935.pdb > /var/tmp/scwrl_77430935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_77430935.pdb Number of alignments=1611 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 42 :LATLD 2ig6A 16 :LATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDAR 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPK T0506 91 :LAPFGKG 2ig6A 59 :VEISGMN T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPA 2ig6A 111 :YFTKGEGTICSFKGEN Number of specific fragments extracted= 6 number of extra gaps= 0 total=12769 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1022498848.pdb -s /var/tmp/to_scwrl_1022498848.seq -o /var/tmp/from_scwrl_1022498848.pdb > /var/tmp/scwrl_1022498848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1022498848.pdb Number of alignments=1612 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 32 :DVLHTSRTAALATLD 2ig6A 6 :EFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 95 :GKG 2ig6A 63 :GMN T0506 100 :LTLPRLTLVGRADRIGP 2ig6A 66 :KKGQWIRLTGEVANDDR T0506 120 :PLAIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 83 :REVKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPA 2ig6A 111 :YFTKGEGTICSFKGEN Number of specific fragments extracted= 6 number of extra gaps= 0 total=12775 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1667860751.pdb -s /var/tmp/to_scwrl_1667860751.seq -o /var/tmp/from_scwrl_1667860751.pdb > /var/tmp/scwrl_1667860751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667860751.pdb Number of alignments=1613 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APF 2ig6A 63 :GMN T0506 100 :LTLPRLTLVGRADRIGPD 2ig6A 66 :KKGQWIRLTGEVANDDRR T0506 121 :LAIARYIARYPKAKLYLSLPDTRLYRLRTE 2ig6A 84 :EVKELALEAVPSLKNMYSVDDGIFAVLYFT T0506 156 :GGPAR 2ig6A 114 :KGEGT Number of specific fragments extracted= 6 number of extra gaps= 0 total=12781 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_681297744.pdb -s /var/tmp/to_scwrl_681297744.seq -o /var/tmp/from_scwrl_681297744.pdb > /var/tmp/scwrl_681297744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681297744.pdb Number of alignments=1614 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2ig6A -1 :QGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :F 2ig6A 65 :N T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRLR 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVLY T0506 154 :INGGPARNASNITP 2ig6A 112 :FTKGEGTICSFKGE Number of specific fragments extracted= 6 number of extra gaps= 0 total=12787 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_579948555.pdb -s /var/tmp/to_scwrl_579948555.seq -o /var/tmp/from_scwrl_579948555.pdb > /var/tmp/scwrl_579948555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_579948555.pdb Number of alignments=1615 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMN T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNI 2ig6A 111 :YFTKGEGTICSFK Number of specific fragments extracted= 5 number of extra gaps= 0 total=12792 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1960293829.pdb -s /var/tmp/to_scwrl_1960293829.seq -o /var/tmp/from_scwrl_1960293829.pdb > /var/tmp/scwrl_1960293829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960293829.pdb Number of alignments=1616 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2ig6A -1 :QGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAP 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMN T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITP 2ig6A 111 :YFTKGEGTICSFKGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=12797 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_834011999.pdb -s /var/tmp/to_scwrl_834011999.seq -o /var/tmp/from_scwrl_834011999.pdb > /var/tmp/scwrl_834011999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_834011999.pdb Number of alignments=1617 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 21 :GAPFEAVRVARDVLHTSRTAALATLD 2ig6A -5 :NLYFQGMKRALEFLKECGVFYLATNE T0506 47 :PVSGYPYTT 2ig6A 23 :QPRVRPFGA T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 32 :VFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGKG 2ig6A 63 :GMNKKG T0506 103 :PRLTLVGRADRIGPDE 2ig6A 69 :QWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNITPA 2ig6A 111 :YFTKGEGTICSFKGEN Number of specific fragments extracted= 7 number of extra gaps= 0 total=12804 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_454683235.pdb -s /var/tmp/to_scwrl_454683235.seq -o /var/tmp/from_scwrl_454683235.pdb > /var/tmp/scwrl_454683235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_454683235.pdb Number of alignments=1618 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGKG 2ig6A 63 :GMNKKG T0506 103 :PRLTLVGRADRIGPDE 2ig6A 69 :QWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVLYFTKGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=12809 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_715022354.pdb -s /var/tmp/to_scwrl_715022354.seq -o /var/tmp/from_scwrl_715022354.pdb > /var/tmp/scwrl_715022354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715022354.pdb Number of alignments=1619 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2ig6A)H-11 T0506 16 :IEPSAGAPFEAVRVARDVLHTSRTAALATLD 2ig6A -10 :HHHHENLYFQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVT 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEIS T0506 92 :APFGKG 2ig6A 63 :GMNKKG T0506 103 :PRLTLVGRADRIGPD 2ig6A 69 :QWIRLTGEVANDDRR T0506 121 :LAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQIN 2ig6A 84 :EVKELALEAVPSLKNMYSVDDGIFAVLYFTKGEGT T0506 225 :ASASDLARLWF 2ig6A 119 :ICSFKGENETF Number of specific fragments extracted= 6 number of extra gaps= 0 total=12815 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1157269686.pdb -s /var/tmp/to_scwrl_1157269686.seq -o /var/tmp/from_scwrl_1157269686.pdb > /var/tmp/scwrl_1157269686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1157269686.pdb Number of alignments=1620 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2ig6A -2 :FQGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :F 2ig6A 65 :N T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRLRTEG 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVLYFTK T0506 157 :GPARNA 2ig6A 115 :GEGTIC Number of specific fragments extracted= 6 number of extra gaps= 0 total=12821 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1060878032.pdb -s /var/tmp/to_scwrl_1060878032.seq -o /var/tmp/from_scwrl_1060878032.pdb > /var/tmp/scwrl_1060878032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1060878032.pdb Number of alignments=1621 # 2ig6A read from all-align.a2m # found chain 2ig6A in template set T0506 25 :EAVRVARDVLHTSRTAALATLD 2ig6A -1 :QGMKRALEFLKECGVFYLATNE T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLA 2ig6A 21 :GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGM T0506 94 :F 2ig6A 65 :N T0506 100 :LTLPRLTLVGRADRIGPDE 2ig6A 66 :KKGQWIRLTGEVANDDRRE T0506 122 :AIARYIARYPKAKLYLSLPDTRLYRL 2ig6A 85 :VKELALEAVPSLKNMYSVDDGIFAVL T0506 153 :QINGGPARNASNIT 2ig6A 111 :YFTKGEGTICSFKG Number of specific fragments extracted= 6 number of extra gaps= 0 total=12827 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2062346245.pdb -s /var/tmp/to_scwrl_2062346245.seq -o /var/tmp/from_scwrl_2062346245.pdb > /var/tmp/scwrl_2062346245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2062346245.pdb Number of alignments=1622 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)R190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)I194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)K195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)K247 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFFF 2ol5A 32 :QRELFATHLPLLLDREKTCLYG T0506 71 :AAGLTLHARNME 2ol5A 55 :FARSNPQWNDIQ T0506 84 :DARISVTLAPF 2ol5A 67 :HQTVLAIFHGP T0506 98 :DALTLPR 2ol5A 78 :HCYISPS T0506 105 :LTLVGRADRI 2ol5A 100 :VHVYGNVELI T0506 115 :GPDEVPLAIARYIARYPKAKLYLS 2ol5A 111 :DQGEVMQSLHDMVEKYEAPGSRYQ T0506 191 :LNA 2ol5A 143 :LSG T0506 196 :GEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFE 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 10 number of extra gaps= 2 total=12837 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_902819070.pdb -s /var/tmp/to_scwrl_902819070.seq -o /var/tmp/from_scwrl_902819070.pdb > /var/tmp/scwrl_902819070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902819070.pdb Number of alignments=1623 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)R190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)I194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)K195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)K247 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFFF 2ol5A 32 :QRELFATHLPLLLDREKTCLYG T0506 71 :AAGLTLHARNME 2ol5A 55 :FARSNPQWNDIQ T0506 84 :DARISVTLAPF 2ol5A 67 :HQTVLAIFHGP T0506 98 :DALTLPR 2ol5A 78 :HCYISPS T0506 105 :LTLVGRADRIG 2ol5A 100 :VHVYGNVELIN T0506 116 :PDEVPLAIARYIARYPKAKLYLS 2ol5A 112 :QGEVMQSLHDMVEKYEAPGSRYQ T0506 191 :LNA 2ol5A 143 :LSG T0506 196 :GEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFE 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 10 number of extra gaps= 3 total=12847 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_172453683.pdb -s /var/tmp/to_scwrl_172453683.seq -o /var/tmp/from_scwrl_172453683.pdb > /var/tmp/scwrl_172453683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172453683.pdb Number of alignments=1624 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFFF 2ol5A 32 :QRELFATHLPLLLDREKTCLYG Number of specific fragments extracted= 3 number of extra gaps= 2 total=12850 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFFF 2ol5A 32 :QRELFATHLPLLLDREKTCLYG T0506 71 :AAGLTLHARNME 2ol5A 55 :FARSNPQWNDIQ T0506 84 :DARISVTLAPF 2ol5A 67 :HQTVLAIFHGP T0506 98 :DALTLPR 2ol5A 78 :HCYISPS T0506 105 :LTLVGRADRIG 2ol5A 100 :VHVYGNVELIN T0506 116 :PDEVPLAIARYIARYPKAKLYL 2ol5A 112 :QGEVMQSLHDMVEKYEAPGSRY T0506 140 :PDTRLYRLRTEGVQ 2ol5A 148 :KGIQAFKIIIKRIE Number of specific fragments extracted= 9 number of extra gaps= 2 total=12859 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1899709556.pdb -s /var/tmp/to_scwrl_1899709556.seq -o /var/tmp/from_scwrl_1899709556.pdb > /var/tmp/scwrl_1899709556.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899709556.pdb Number of alignments=1625 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)A183 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)R190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)I194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)K195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)K247 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLDPVSGYPYTTATNIG 2ol5A 27 :LVSMHQRELFATHLPLLLD T0506 62 :EPDGTPFFFAAGLTLHARNMETDARISVTLAP 2ol5A 46 :REKTCLYGHFARSNPQWNDIQHQTVLAIFHGP T0506 98 :DALTLPRLT 2ol5A 78 :HCYISPSWY T0506 107 :LVGRADRIGPDEVPLAIARYIA 2ol5A 102 :VYGNVELINDQGEVMQSLHDMV T0506 178 :EELMA 2ol5A 130 :GSRYQ T0506 191 :LNA 2ol5A 143 :LSG T0506 196 :GEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFE 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 8 number of extra gaps= 2 total=12867 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_606033629.pdb -s /var/tmp/to_scwrl_606033629.seq -o /var/tmp/from_scwrl_606033629.pdb > /var/tmp/scwrl_606033629.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_606033629.pdb Number of alignments=1626 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)A183 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)R190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)I194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)K195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLDPVS 2ol5A 27 :LVSMHQRE T0506 50 :GY 2ol5A 39 :HL T0506 62 :EPDGTPFFFAAGLTLHARNMETD 2ol5A 46 :REKTCLYGHFARSNPQWNDIQHQ T0506 89 :VTLAPFGKGDALTLPRL 2ol5A 69 :TVLAIFHGPHCYISPSW T0506 106 :TLVGRADRIGPDEVPLAIARYIA 2ol5A 101 :HVYGNVELINDQGEVMQSLHDMV T0506 178 :EELMA 2ol5A 130 :GSRYQ T0506 191 :LNA 2ol5A 143 :LSG T0506 196 :GEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAE 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIKQLEQMPFEN T0506 246 :EKALAQLLK 2ol5A 190 :EKRIASLMK Number of specific fragments extracted= 10 number of extra gaps= 2 total=12877 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1477736575.pdb -s /var/tmp/to_scwrl_1477736575.seq -o /var/tmp/from_scwrl_1477736575.pdb > /var/tmp/scwrl_1477736575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1477736575.pdb Number of alignments=1627 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)Y136 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)R143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)L147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 T0506 107 :LVGRADRIGPDEVPLAIARYIA 2ol5A 102 :VYGNVELINDQGEVMQSLHDMV T0506 131 :PKAKL 2ol5A 130 :GSRYQ T0506 144 :LYR 2ol5A 143 :LSG Number of specific fragments extracted= 3 number of extra gaps= 1 total=12880 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1935250415.pdb -s /var/tmp/to_scwrl_1935250415.seq -o /var/tmp/from_scwrl_1935250415.pdb > /var/tmp/scwrl_1935250415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1935250415.pdb Number of alignments=1628 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set T0506 108 :VGRADRIGPDEVPLAIARYIA 2ol5A 103 :YGNVELINDQGEVMQSLHDMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=12881 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1130272676.pdb -s /var/tmp/to_scwrl_1130272676.seq -o /var/tmp/from_scwrl_1130272676.pdb > /var/tmp/scwrl_1130272676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1130272676.pdb Number of alignments=1629 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set T0506 246 :EKALAQLLK 2ol5A 190 :EKRIASLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=12882 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=12882 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLN 2ol5A 169 :NHPAHRQERIIKQLE T0506 236 :AERVETLKQFEKALA 2ol5A 184 :QMPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=12893 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1570960678.pdb -s /var/tmp/to_scwrl_1570960678.seq -o /var/tmp/from_scwrl_1570960678.pdb > /var/tmp/scwrl_1570960678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1570960678.pdb Number of alignments=1630 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)A193 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLT 2ol5A 51 :LYGHFARSN T0506 76 :LHARNMETDARISVTLAPFGKG 2ol5A 68 :QTVLAIFHGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRT 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQNHPAHRQERIIK T0506 175 :SGAEELMAAAESEATRLN 2ol5A 181 :QLEQMPFENEKRIASLMK Number of specific fragments extracted= 10 number of extra gaps= 1 total=12903 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1966455621.pdb -s /var/tmp/to_scwrl_1966455621.seq -o /var/tmp/from_scwrl_1966455621.pdb > /var/tmp/scwrl_1966455621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966455621.pdb Number of alignments=1631 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLT 2ol5A 51 :LYGHFARSN T0506 76 :LHARNMETDARISVTLAPFGKG 2ol5A 68 :QTVLAIFHGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGP 2ol5A 148 :KGIQAFKIIIKRIEGKAKL T0506 176 :GAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 167 :SQNHPAHRQERIIKQLEQMPFENEKRIA T0506 248 :ALA 2ol5A 196 :LMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=12914 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1359811794.pdb -s /var/tmp/to_scwrl_1359811794.seq -o /var/tmp/from_scwrl_1359811794.pdb > /var/tmp/scwrl_1359811794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1359811794.pdb Number of alignments=1632 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIA T0506 248 :ALA 2ol5A 196 :LMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=12925 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1904990996.pdb -s /var/tmp/to_scwrl_1904990996.seq -o /var/tmp/from_scwrl_1904990996.pdb > /var/tmp/scwrl_1904990996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1904990996.pdb Number of alignments=1633 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPA 2ol5A 148 :KGIQAFKIIIKRIEGKAKLS T0506 177 :AEELMAAAESEATRLNA 2ol5A 168 :QNHPAHRQERIIKQLEQ T0506 237 :ERVETLKQFEKALA 2ol5A 185 :MPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=12936 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1954683236.pdb -s /var/tmp/to_scwrl_1954683236.seq -o /var/tmp/from_scwrl_1954683236.pdb > /var/tmp/scwrl_1954683236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954683236.pdb Number of alignments=1634 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)A207 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISVTLAP 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAIFHGP T0506 94 :F 2ol5A 86 :Y T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPA 2ol5A 148 :KGIQAFKIIIKRIEGKAKLS T0506 177 :AEELMAAAESEATRLNAIKGEASRLAV 2ol5A 168 :QNHPAHRQERIIKQLEQMPFENEKRIA T0506 204 :LAG 2ol5A 196 :LMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=12947 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_662974206.pdb -s /var/tmp/to_scwrl_662974206.seq -o /var/tmp/from_scwrl_662974206.pdb > /var/tmp/scwrl_662974206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_662974206.pdb Number of alignments=1635 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIA T0506 248 :ALA 2ol5A 196 :LMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=12958 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1064175271.pdb -s /var/tmp/to_scwrl_1064175271.seq -o /var/tmp/from_scwrl_1064175271.pdb > /var/tmp/scwrl_1064175271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064175271.pdb Number of alignments=1636 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLT 2ol5A 51 :LYGHFARSN T0506 76 :LHARNMETDARISVTLAPFGKG 2ol5A 68 :QTVLAIFHGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLNA 2ol5A 169 :NHPAHRQERIIKQLEQ T0506 237 :ERVETLKQFEKALA 2ol5A 185 :MPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=12969 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1271553084.pdb -s /var/tmp/to_scwrl_1271553084.seq -o /var/tmp/from_scwrl_1271553084.pdb > /var/tmp/scwrl_1271553084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271553084.pdb Number of alignments=1637 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISVT 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAIF T0506 93 :P 2ol5A 75 :H T0506 94 :F 2ol5A 89 :N T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLN 2ol5A 169 :NHPAHRQERIIKQLE T0506 236 :AERVETLKQFEKALA 2ol5A 184 :QMPFENEKRIASLMK Number of specific fragments extracted= 12 number of extra gaps= 1 total=12981 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_42132922.pdb -s /var/tmp/to_scwrl_42132922.seq -o /var/tmp/from_scwrl_42132922.pdb > /var/tmp/scwrl_42132922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_42132922.pdb Number of alignments=1638 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETD 2ol5A 51 :LYGHFARSNPQWNDIQHQ T0506 86 :RISVTLAP 2ol5A 69 :TVLAIFHG T0506 94 :FGKG 2ol5A 86 :YETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 164 :NITP 2ol5A 169 :NHPA T0506 182 :AAAESEATRLNAI 2ol5A 173 :HRQERIIKQLEQM T0506 195 :K 2ol5A 189 :N T0506 246 :EKALAQLLK 2ol5A 190 :EKRIASLMK Number of specific fragments extracted= 14 number of extra gaps= 1 total=12995 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1156282434.pdb -s /var/tmp/to_scwrl_1156282434.seq -o /var/tmp/from_scwrl_1156282434.pdb > /var/tmp/scwrl_1156282434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156282434.pdb Number of alignments=1639 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)A207 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIA T0506 204 :LAG 2ol5A 196 :LMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=13006 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2117646577.pdb -s /var/tmp/to_scwrl_2117646577.seq -o /var/tmp/from_scwrl_2117646577.pdb > /var/tmp/scwrl_2117646577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117646577.pdb Number of alignments=1640 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNME 2ol5A 51 :LYGHFARSNPQWNDIQ T0506 83 :TDARISVTLAPFGKG 2ol5A 75 :HGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLNAIKGEASRLAV 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIA T0506 204 :LAG 2ol5A 196 :LMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=13017 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_898669184.pdb -s /var/tmp/to_scwrl_898669184.seq -o /var/tmp/from_scwrl_898669184.pdb > /var/tmp/scwrl_898669184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_898669184.pdb Number of alignments=1641 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 236 :AERVETLKQFEKALAQLL 2ol5A 169 :NHPAHRQERIIKQLEQMP Number of specific fragments extracted= 10 number of extra gaps= 1 total=13027 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1233713369.pdb -s /var/tmp/to_scwrl_1233713369.seq -o /var/tmp/from_scwrl_1233713369.pdb > /var/tmp/scwrl_1233713369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233713369.pdb Number of alignments=1642 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLT 2ol5A 51 :LYGHFARSN T0506 76 :LHARNMETDARISVTLAPFGKG 2ol5A 68 :QTVLAIFHGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQIN 2ol5A 148 :KGIQAFKIIIKRIEGK Number of specific fragments extracted= 9 number of extra gaps= 1 total=13036 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_992661778.pdb -s /var/tmp/to_scwrl_992661778.seq -o /var/tmp/from_scwrl_992661778.pdb > /var/tmp/scwrl_992661778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_992661778.pdb Number of alignments=1643 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLT 2ol5A 51 :LYGHFARSN T0506 76 :LHARNMETDARISVTLAPFGKG 2ol5A 68 :QTVLAIFHGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRL 2ol5A 169 :NHPAHRQERIIKQL Number of specific fragments extracted= 10 number of extra gaps= 1 total=13046 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_419046288.pdb -s /var/tmp/to_scwrl_419046288.seq -o /var/tmp/from_scwrl_419046288.pdb > /var/tmp/scwrl_419046288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419046288.pdb Number of alignments=1644 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIA Number of specific fragments extracted= 10 number of extra gaps= 1 total=13056 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1915011113.pdb -s /var/tmp/to_scwrl_1915011113.seq -o /var/tmp/from_scwrl_1915011113.pdb > /var/tmp/scwrl_1915011113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915011113.pdb Number of alignments=1645 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATL 2ol5A 27 :LVSM T0506 48 :VSGYPYTTATNIGIEPDGT 2ol5A 31 :HQRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLNAI 2ol5A 169 :NHPAHRQERIIKQLEQM Number of specific fragments extracted= 10 number of extra gaps= 1 total=13066 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1572610332.pdb -s /var/tmp/to_scwrl_1572610332.seq -o /var/tmp/from_scwrl_1572610332.pdb > /var/tmp/scwrl_1572610332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1572610332.pdb Number of alignments=1646 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISVTLAP 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAIFHGP T0506 94 :F 2ol5A 86 :Y T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLNAIKGEASRLAV 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIA Number of specific fragments extracted= 10 number of extra gaps= 1 total=13076 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_231856470.pdb -s /var/tmp/to_scwrl_231856470.seq -o /var/tmp/from_scwrl_231856470.pdb > /var/tmp/scwrl_231856470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_231856470.pdb Number of alignments=1647 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIA Number of specific fragments extracted= 10 number of extra gaps= 1 total=13086 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_601539465.pdb -s /var/tmp/to_scwrl_601539465.seq -o /var/tmp/from_scwrl_601539465.pdb > /var/tmp/scwrl_601539465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_601539465.pdb Number of alignments=1648 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLT 2ol5A 51 :LYGHFARSN T0506 76 :LHARNMETDARISVTLAPFGKG 2ol5A 68 :QTVLAIFHGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPA 2ol5A 148 :KGIQAFKIIIKRIEGKAKLS Number of specific fragments extracted= 9 number of extra gaps= 1 total=13095 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2027293567.pdb -s /var/tmp/to_scwrl_2027293567.seq -o /var/tmp/from_scwrl_2027293567.pdb > /var/tmp/scwrl_2027293567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027293567.pdb Number of alignments=1649 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISVT 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAIF T0506 93 :P 2ol5A 75 :H T0506 94 :F 2ol5A 89 :N T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLN 2ol5A 169 :NHPAHRQERIIKQLE T0506 236 :AERVETLKQFEKAL 2ol5A 184 :QMPFENEKRIASLM Number of specific fragments extracted= 12 number of extra gaps= 1 total=13107 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_946878824.pdb -s /var/tmp/to_scwrl_946878824.seq -o /var/tmp/from_scwrl_946878824.pdb > /var/tmp/scwrl_946878824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946878824.pdb Number of alignments=1650 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETD 2ol5A 51 :LYGHFARSNPQWNDIQHQ T0506 86 :RISVTLAP 2ol5A 69 :TVLAIFHG T0506 94 :FGKG 2ol5A 86 :YETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 175 :SGAEELMAAAESEATRL 2ol5A 169 :NHPAHRQERIIKQLEQM T0506 192 :NAIKGEASR 2ol5A 190 :EKRIASLMK Number of specific fragments extracted= 12 number of extra gaps= 1 total=13119 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1758809151.pdb -s /var/tmp/to_scwrl_1758809151.seq -o /var/tmp/from_scwrl_1758809151.pdb > /var/tmp/scwrl_1758809151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1758809151.pdb Number of alignments=1651 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDARISV 2ol5A 51 :LYGHFARSNPQWNDIQHQTVLAI T0506 91 :LAPFGKG 2ol5A 74 :FHGPHCY T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIA T0506 204 :L 2ol5A 196 :L Number of specific fragments extracted= 11 number of extra gaps= 1 total=13130 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_940687953.pdb -s /var/tmp/to_scwrl_940687953.seq -o /var/tmp/from_scwrl_940687953.pdb > /var/tmp/scwrl_940687953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_940687953.pdb Number of alignments=1652 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNME 2ol5A 51 :LYGHFARSNPQWNDIQ T0506 83 :TDARISVTLAPFGKG 2ol5A 75 :HGPHCYISPSWYETN T0506 98 :DALTLPRLTLVGRADRIGP 2ol5A 93 :PTWNYVAVHVYGNVELIND T0506 117 :DEVPLAIARYIARY 2ol5A 113 :GEVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQ T0506 178 :EELMAAAESEATRLNAIKGEASRLAV 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIA Number of specific fragments extracted= 10 number of extra gaps= 1 total=13140 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_861741422.pdb -s /var/tmp/to_scwrl_861741422.seq -o /var/tmp/from_scwrl_861741422.pdb > /var/tmp/scwrl_861741422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_861741422.pdb Number of alignments=1653 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)E187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)L191 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)N192 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 26 :AVR 2ol5A 14 :VAY T0506 32 :DVLHTSRT 2ol5A 17 :QVIEENSF T0506 42 :LATLDP 2ol5A 27 :LVSMHQ T0506 50 :GYPYTTATNIGIEP 2ol5A 33 :RELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 131 :PKAKL 2ol5A 129 :PGSRY T0506 179 :E 2ol5A 134 :Q T0506 188 :ATR 2ol5A 143 :LSG T0506 193 :AIKGEASRLAVLAGAK 2ol5A 148 :KGIQAFKIIIKRIEGK T0506 225 :ASASDLARLWFAERVETLKQFEKALA 2ol5A 173 :HRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 12 number of extra gaps= 2 total=13152 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_514144575.pdb -s /var/tmp/to_scwrl_514144575.seq -o /var/tmp/from_scwrl_514144575.pdb > /var/tmp/scwrl_514144575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514144575.pdb Number of alignments=1654 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)E187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)L191 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)N192 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPHCYI T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 172 :TDLSGAEE 2ol5A 127 :EAPGSRYQ T0506 188 :ATR 2ol5A 143 :LSG T0506 193 :AIKGEASRLAVLAGAKTGRWKITSIDP 2ol5A 148 :KGIQAFKIIIKRIEGKAKLSQNHPAHR T0506 227 :ASDLARLWFAERVETLKQFEKALA 2ol5A 175 :QERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 10 number of extra gaps= 2 total=13162 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1113141635.pdb -s /var/tmp/to_scwrl_1113141635.seq -o /var/tmp/from_scwrl_1113141635.pdb > /var/tmp/scwrl_1113141635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113141635.pdb Number of alignments=1655 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A26 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)E187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)L191 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)N192 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLDP 2ol5A 27 :LVSMHQ T0506 50 :GYPYTTATNIGIEP 2ol5A 33 :RELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVT 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIF T0506 93 :PFGK 2ol5A 75 :HGPH T0506 98 :DALTLPRLTLVGRADRIGPDE 2ol5A 93 :PTWNYVAVHVYGNVELINDQG T0506 134 :KLYLSLPDTR 2ol5A 114 :EVMQSLHDMV T0506 167 :PADL 2ol5A 124 :EKYE T0506 173 :DLSGAEE 2ol5A 128 :APGSRYQ T0506 188 :ATR 2ol5A 143 :LSG T0506 193 :AIKGEASRLAVLAGAK 2ol5A 148 :KGIQAFKIIIKRIEGK T0506 222 :IDLASASDLARLWFAERVETLKQFEKALA 2ol5A 170 :HPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 12 number of extra gaps= 2 total=13174 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_613967331.pdb -s /var/tmp/to_scwrl_613967331.seq -o /var/tmp/from_scwrl_613967331.pdb > /var/tmp/scwrl_613967331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613967331.pdb Number of alignments=1656 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)K208 because last residue in template chain is (2ol5A)K199 T0506 26 :A 2ol5A 14 :V T0506 30 :ARDVLHTSRT 2ol5A 15 :AYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDAR 2ol5A 51 :LYGHFARSNPQWNDIQHQTV T0506 89 :VTLAPFGKG 2ol5A 71 :LAIFHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAVLAGA 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 2 total=13185 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1120178203.pdb -s /var/tmp/to_scwrl_1120178203.seq -o /var/tmp/from_scwrl_1120178203.pdb > /var/tmp/scwrl_1120178203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120178203.pdb Number of alignments=1657 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISV 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAI T0506 92 :APFGKG 2ol5A 74 :FHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIARY 2ol5A 116 :MQSLHDMVEKYE T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 163 :S 2ol5A 166 :L T0506 169 :DLRTD 2ol5A 167 :SQNHP T0506 181 :MAAAESEAT 2ol5A 172 :AHRQERIIK T0506 233 :LWFAERVETLKQFEKALA 2ol5A 181 :QLEQMPFENEKRIASLMK Number of specific fragments extracted= 14 number of extra gaps= 2 total=13199 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_443394565.pdb -s /var/tmp/to_scwrl_443394565.seq -o /var/tmp/from_scwrl_443394565.pdb > /var/tmp/scwrl_443394565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_443394565.pdb Number of alignments=1658 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)K208 because last residue in template chain is (2ol5A)K199 T0506 26 :AV 2ol5A 14 :VA T0506 31 :RDVLHTSRT 2ol5A 16 :YQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVT 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIF T0506 92 :APFGKG 2ol5A 81 :ISPSWY T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIAR 2ol5A 116 :MQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 141 :DTRLYRLRTEGVQINGG 2ol5A 149 :GIQAFKIIIKRIEGKAK T0506 172 :TDL 2ol5A 166 :LSQ T0506 178 :EELMAAAESEATRLNAIKGEASRLAVLAGA 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 13 number of extra gaps= 1 total=13212 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_401734099.pdb -s /var/tmp/to_scwrl_401734099.seq -o /var/tmp/from_scwrl_401734099.pdb > /var/tmp/scwrl_401734099.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_401734099.pdb Number of alignments=1659 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)K208 because last residue in template chain is (2ol5A)K199 T0506 26 :A 2ol5A 14 :V T0506 30 :ARDVLHTSRT 2ol5A 15 :AYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIARY 2ol5A 116 :MQSLHDMVEKYE T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQING 2ol5A 148 :KGIQAFKIIIKRIEGKA T0506 162 :AS 2ol5A 165 :KL T0506 173 :D 2ol5A 167 :S T0506 177 :AEELMAAAESEATRLNAIKGEASRLAVLAGA 2ol5A 168 :QNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 13 number of extra gaps= 2 total=13225 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_102967233.pdb -s /var/tmp/to_scwrl_102967233.seq -o /var/tmp/from_scwrl_102967233.pdb > /var/tmp/scwrl_102967233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_102967233.pdb Number of alignments=1660 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)E187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)L191 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)N192 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 26 :AVR 2ol5A 14 :VAY T0506 32 :DVLHTSRT 2ol5A 17 :QVIEENSF T0506 42 :LATLDPVS 2ol5A 27 :LVSMHQRE T0506 52 :PYTTATNIGIEP 2ol5A 35 :LFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDAR 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTV T0506 89 :VTLAPFG 2ol5A 71 :LAIFHGP T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARYP 2ol5A 114 :EVMQSLHDMVEKYE T0506 173 :DLSGAEE 2ol5A 128 :APGSRYQ T0506 188 :ATR 2ol5A 143 :LSG T0506 193 :AIKGEASRLAVLAGAK 2ol5A 148 :KGIQAFKIIIKRIEGK T0506 224 :LASASDLARLWFAERVETLKQFEKALA 2ol5A 172 :AHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 12 number of extra gaps= 2 total=13237 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2014355243.pdb -s /var/tmp/to_scwrl_2014355243.seq -o /var/tmp/from_scwrl_2014355243.pdb > /var/tmp/scwrl_2014355243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2014355243.pdb Number of alignments=1661 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)Q251 because last residue in template chain is (2ol5A)K199 T0506 26 :AVR 2ol5A 14 :VAY T0506 32 :DVLHTSRT 2ol5A 17 :QVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFF 2ol5A 32 :QRELFATHLPLLLDREKTCLY T0506 70 :FAAGLTLHARNMETDARISVTLAPF 2ol5A 54 :HFARSNPQWNDIQHQTVLAIFHGPH T0506 95 :GK 2ol5A 84 :SW T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVL 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 2 total=13248 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_220706074.pdb -s /var/tmp/to_scwrl_220706074.seq -o /var/tmp/from_scwrl_220706074.pdb > /var/tmp/scwrl_220706074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220706074.pdb Number of alignments=1662 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)A205 because last residue in template chain is (2ol5A)K199 T0506 26 :AVR 2ol5A 14 :VAY T0506 32 :DVLHTSRT 2ol5A 17 :QVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2ol5A 32 :QRELFATHLPLLLDREKTCLYGHF T0506 73 :GLTLHARNMETDA 2ol5A 57 :RSNPQWNDIQHQT T0506 87 :I 2ol5A 70 :V T0506 89 :VTLAPF 2ol5A 71 :LAIFHG T0506 96 :KG 2ol5A 83 :PS T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 141 :DTRLYRLRTEGVQINGGPAR 2ol5A 149 :GIQAFKIIIKRIEGKAKLSQ T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAVL 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 13 number of extra gaps= 1 total=13261 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1462779027.pdb -s /var/tmp/to_scwrl_1462779027.seq -o /var/tmp/from_scwrl_1462779027.pdb > /var/tmp/scwrl_1462779027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1462779027.pdb Number of alignments=1663 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 Warning: unaligning (T0506)A205 because last residue in template chain is (2ol5A)K199 T0506 26 :A 2ol5A 14 :V T0506 30 :ARDVLHTSRT 2ol5A 15 :AYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIAR 2ol5A 116 :MQSLHDMVEKY T0506 130 :YPKAKLY 2ol5A 128 :APGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVL 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 2 total=13272 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1771862592.pdb -s /var/tmp/to_scwrl_1771862592.seq -o /var/tmp/from_scwrl_1771862592.pdb > /var/tmp/scwrl_1771862592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1771862592.pdb Number of alignments=1664 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)K208 because last residue in template chain is (2ol5A)K199 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPH T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIARY 2ol5A 116 :MQSLHDMVEKYE T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 141 :DTRLYRLRTEGVQINGG 2ol5A 149 :GIQAFKIIIKRIEGKAK T0506 172 :TDL 2ol5A 166 :LSQ T0506 178 :EELMAAAESEATRLNAIKGEASRLAVLAGA 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 1 total=13283 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_27905663.pdb -s /var/tmp/to_scwrl_27905663.seq -o /var/tmp/from_scwrl_27905663.pdb > /var/tmp/scwrl_27905663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27905663.pdb Number of alignments=1665 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)E187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ol5A)M142 Warning: unaligning (T0506)L191 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)N147 Warning: unaligning (T0506)N192 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 T0506 33 :VLHTSRT 2ol5A 18 :VIEENSF T0506 42 :LATLDP 2ol5A 27 :LVSMHQ T0506 50 :GYPYTTATNIGIEP 2ol5A 33 :RELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPH T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARYPK 2ol5A 114 :EVMQSLHDMVEKYEA T0506 174 :LSGAEE 2ol5A 129 :PGSRYQ T0506 188 :ATR 2ol5A 143 :LSG T0506 193 :A 2ol5A 148 :K Number of specific fragments extracted= 9 number of extra gaps= 2 total=13292 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2125753233.pdb -s /var/tmp/to_scwrl_2125753233.seq -o /var/tmp/from_scwrl_2125753233.pdb > /var/tmp/scwrl_2125753233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125753233.pdb Number of alignments=1666 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLDPVS 2ol5A 27 :LVSMHQRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=13294 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set T0506 99 :ALTLPRLTLVGRADRIGPD 2ol5A 94 :TWNYVAVHVYGNVELINDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13295 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGT 2ol5A 32 :QRELFATHLPLLLDREKT T0506 67 :PFFFAAGLTLHARNMETDAR 2ol5A 51 :LYGHFARSNPQWNDIQHQTV T0506 89 :VTLAPFGKG 2ol5A 71 :LAIFHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAVL 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIAS Number of specific fragments extracted= 10 number of extra gaps= 2 total=13305 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_688554217.pdb -s /var/tmp/to_scwrl_688554217.seq -o /var/tmp/from_scwrl_688554217.pdb > /var/tmp/scwrl_688554217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_688554217.pdb Number of alignments=1667 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISV 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAI T0506 92 :APFGKG 2ol5A 74 :FHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIAR 2ol5A 116 :MQSLHDM Number of specific fragments extracted= 8 number of extra gaps= 1 total=13313 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1299458747.pdb -s /var/tmp/to_scwrl_1299458747.seq -o /var/tmp/from_scwrl_1299458747.pdb > /var/tmp/scwrl_1299458747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1299458747.pdb Number of alignments=1668 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVT 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIF T0506 92 :APFGKG 2ol5A 81 :ISPSWY T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIAR 2ol5A 116 :MQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 141 :DTRLYRLRTEGVQINGG 2ol5A 149 :GIQAFKIIIKRIEGKAK T0506 172 :TDL 2ol5A 166 :LSQ T0506 178 :EELMAAAESEATRLNAIKGEASRLAVLAG 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIASLM Number of specific fragments extracted= 12 number of extra gaps= 1 total=13325 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_20402508.pdb -s /var/tmp/to_scwrl_20402508.seq -o /var/tmp/from_scwrl_20402508.pdb > /var/tmp/scwrl_20402508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_20402508.pdb Number of alignments=1669 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIARY 2ol5A 116 :MQSLHDMVEKYE T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQING 2ol5A 148 :KGIQAFKIIIKRIEGKA T0506 162 :AS 2ol5A 165 :KL T0506 173 :DL 2ol5A 167 :SQ T0506 178 :EELMAAAESEATRLNAIKGEASRLAVLAG 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIASLM Number of specific fragments extracted= 12 number of extra gaps= 2 total=13337 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1844836651.pdb -s /var/tmp/to_scwrl_1844836651.seq -o /var/tmp/from_scwrl_1844836651.pdb > /var/tmp/scwrl_1844836651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844836651.pdb Number of alignments=1670 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set T0506 105 :LTLVGRADRIGPD 2ol5A 100 :VHVYGNVELINDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13338 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 T0506 26 :AVR 2ol5A 14 :VAY T0506 32 :DVLHTSRT 2ol5A 17 :QVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFF 2ol5A 32 :QRELFATHLPLLLDREKTCLY T0506 70 :FAAGLTLHARNMETDARISVTLAPF 2ol5A 54 :HFARSNPQWNDIQHQTVLAIFHGPH T0506 95 :GK 2ol5A 84 :SW T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVL 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 11 number of extra gaps= 2 total=13349 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1269621677.pdb -s /var/tmp/to_scwrl_1269621677.seq -o /var/tmp/from_scwrl_1269621677.pdb > /var/tmp/scwrl_1269621677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1269621677.pdb Number of alignments=1671 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)P23 because first residue in template chain is (2ol5A)D11 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 26 :AVR 2ol5A 14 :VAY T0506 32 :DVLHTSRT 2ol5A 17 :QVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEPDGTPFFFAA 2ol5A 32 :QRELFATHLPLLLDREKTCLYGHF T0506 73 :GLTLHARNMETDA 2ol5A 57 :RSNPQWNDIQHQT T0506 87 :I 2ol5A 70 :V T0506 89 :VTLAPF 2ol5A 71 :LAIFHG T0506 96 :KG 2ol5A 83 :PS T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :EVPLAIARYIARY 2ol5A 114 :EVMQSLHDMVEKY T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 141 :DTRLYRLRTEGVQINGGPAR 2ol5A 149 :GIQAFKIIIKRIEGKAKLSQ T0506 175 :SGAEELMAAAESEATRLNAIKGEASRLAVL 2ol5A 169 :NHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 13 number of extra gaps= 1 total=13362 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_919071692.pdb -s /var/tmp/to_scwrl_919071692.seq -o /var/tmp/from_scwrl_919071692.pdb > /var/tmp/scwrl_919071692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_919071692.pdb Number of alignments=1672 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)N147 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPHC T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIAR 2ol5A 116 :MQSLHDMVEKY T0506 130 :YPKAKLY 2ol5A 128 :APGSRYQ T0506 140 :PDTRLYRLRTEGVQINGG 2ol5A 148 :KGIQAFKIIIKRIEGKAK T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVL 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIASLMK Number of specific fragments extracted= 10 number of extra gaps= 2 total=13372 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_931066375.pdb -s /var/tmp/to_scwrl_931066375.seq -o /var/tmp/from_scwrl_931066375.pdb > /var/tmp/scwrl_931066375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_931066375.pdb Number of alignments=1673 # 2ol5A read from all-align.a2m # found chain 2ol5A in template set Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)D13 Warning: unaligning (T0506)R28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)D13 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ol5A)T26 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ol5A)T26 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ol5A)M142 T0506 29 :VARDVLHTSRT 2ol5A 14 :VAYQVIEENSF T0506 42 :LATLD 2ol5A 27 :LVSMH T0506 49 :SGYPYTTATNIGIEP 2ol5A 32 :QRELFATHLPLLLDR T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2ol5A 48 :KTCLYGHFARSNPQWNDIQHQTVLAIFHGPH T0506 98 :DALTLPRLTLVGRADRIGPD 2ol5A 93 :PTWNYVAVHVYGNVELINDQ T0506 118 :E 2ol5A 114 :E T0506 119 :VPLAIARYIARY 2ol5A 116 :MQSLHDMVEKYE T0506 131 :PKAKLY 2ol5A 129 :PGSRYQ T0506 141 :DTRLYRLRTEGVQINGG 2ol5A 149 :GIQAFKIIIKRIEGKAK T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAV 2ol5A 166 :LSQNHPAHRQERIIKQLEQMPFENEKRIASLM Number of specific fragments extracted= 10 number of extra gaps= 2 total=13382 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_114799808.pdb -s /var/tmp/to_scwrl_114799808.seq -o /var/tmp/from_scwrl_114799808.pdb > /var/tmp/scwrl_114799808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_114799808.pdb Number of alignments=1674 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 1 :MLDVAPP 2ou5A 1 :MSDTVLT T0506 17 :EPSAGAPFEAVRVARDVLHTSRTAALATLDP 2ou5A 8 :GLLDTVWQQFGRGTKDRHHPARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNI 2ou5A 41 :PDLRTLVL T0506 60 :GIEPDGT 2ou5A 50 :AASHAEA T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 58 :LEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRL 2ou5A 91 :VRAKAIAKILPGDPNLFAQLPEAARMNYQGPVPGTPLPAE T0506 205 :AGAKTGRWKITSIDPDGIDLASASDLARLWFAER 2ou5A 131 :PDATPNRFTRLICHLSEIDVLHLTTPHQRAVYTA T0506 240 :ET 2ou5A 165 :PD T0506 247 :KALAQLLK 2ou5A 167 :WRGIWVSP Number of specific fragments extracted= 10 number of extra gaps= 1 total=13392 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1338117979.pdb -s /var/tmp/to_scwrl_1338117979.seq -o /var/tmp/from_scwrl_1338117979.pdb > /var/tmp/scwrl_1338117979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1338117979.pdb Number of alignments=1675 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 4 :VAPP 2ou5A 1 :MSDT T0506 11 :PRGTKIEPSAGAPFEAV 2ou5A 5 :VLTGLLDTVWQQFGRGT T0506 31 :RDVLHTSRTAALATLDP 2ou5A 22 :KDRHHPARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNI 2ou5A 41 :PDLRTLVL T0506 60 :GIEPDGTP 2ou5A 50 :AASHAEAT T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 59 :EFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPDEV 2ou5A 91 :VRAKAIAKILPGDPN T0506 138 :SLPDTRL 2ou5A 121 :PVPGTPL T0506 205 :AGAKTGRWKITSIDPDGIDLASASDLARLWFAER 2ou5A 131 :PDATPNRFTRLICHLSEIDVLHLTTPHQRAVYTA T0506 240 :ET 2ou5A 165 :PD T0506 247 :KALAQLLK 2ou5A 167 :WRGIWVSP Number of specific fragments extracted= 12 number of extra gaps= 1 total=13404 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_698593841.pdb -s /var/tmp/to_scwrl_698593841.seq -o /var/tmp/from_scwrl_698593841.pdb > /var/tmp/scwrl_698593841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698593841.pdb Number of alignments=1676 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 31 :RDVLHTSRTAALATLDP 2ou5A 22 :KDRHHPARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNI 2ou5A 41 :PDLRTLVL T0506 60 :GIEPDGT 2ou5A 50 :AASHAEA T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 58 :LEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPDEVPLAIARYIARY 2ou5A 91 :VRAKAIAKILPGDPNLFAQLPEAARM Number of specific fragments extracted= 6 number of extra gaps= 1 total=13410 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1687410140.pdb -s /var/tmp/to_scwrl_1687410140.seq -o /var/tmp/from_scwrl_1687410140.pdb > /var/tmp/scwrl_1687410140.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1687410140.pdb Number of alignments=1677 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 30 :ARDVLHTSRTAALATLDP 2ou5A 21 :TKDRHHPARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNI 2ou5A 41 :PDLRTLVL T0506 60 :GIEPDGTP 2ou5A 50 :AASHAEAT T0506 68 :FFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 59 :EFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPDEVPLAIARYIARYPKAK 2ou5A 91 :VRAKAIAKILPGDPNLFAQLPEAARMNYQG T0506 135 :LYLSLPDTRLYRLRTEGVQI 2ou5A 131 :PDATPNRFTRLICHLSEIDV Number of specific fragments extracted= 7 number of extra gaps= 1 total=13417 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1569974449.pdb -s /var/tmp/to_scwrl_1569974449.seq -o /var/tmp/from_scwrl_1569974449.pdb > /var/tmp/scwrl_1569974449.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569974449.pdb Number of alignments=1678 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPF 2ou5A 2 :SDTVLTGLLDTVWQQFGRGTKDRH T0506 35 :HTSRTAALATLDPVS 2ou5A 26 :HPARHPTLATIGTDG T0506 51 :YPYTTATNIGIEPDG 2ou5A 41 :PDLRTLVLRAASHAE T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAP 2ou5A 57 :TLEFHTDAASPKVAHIRRDARVAIHIWI T0506 99 :ALTL 2ou5A 85 :PKAS T0506 105 :LTLVGRADRIGPDEV 2ou5A 91 :VRAKAIAKILPGDPN T0506 123 :IARYIARYPKAKLYLSLPDTRLY 2ou5A 106 :LFAQLPEAARMNYQGPVPGTPLP T0506 225 :ASASDLARLWF 2ou5A 129 :AEPDATPNRFT T0506 236 :AERVETLKQFEKALAQLLK 2ou5A 145 :LSEIDVLHLTTPHQRAVYT Number of specific fragments extracted= 9 number of extra gaps= 1 total=13426 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1300133306.pdb -s /var/tmp/to_scwrl_1300133306.seq -o /var/tmp/from_scwrl_1300133306.pdb > /var/tmp/scwrl_1300133306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300133306.pdb Number of alignments=1679 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 1 :MLDVAPPVITPRGTKIE 2ou5A 2 :SDTVLTGLLDTVWQQFG T0506 28 :RVARDVLHTSRTAALATLDPVS 2ou5A 19 :RGTKDRHHPARHPTLATIGTDG T0506 52 :PYT 2ou5A 41 :PDL T0506 55 :TATNIGIEPDGTPFFFAAGL 2ou5A 45 :TLVLRAASHAEATLEFHTDA T0506 75 :TLHARNMETDARISVTLAP 2ou5A 66 :SPKVAHIRRDARVAIHIWI T0506 99 :ALTL 2ou5A 85 :PKAS T0506 105 :LTLVGRADRIGPDEV 2ou5A 91 :VRAKAIAKILPGDPN T0506 123 :IARYIARYPKAKLYLSLPDTRLY 2ou5A 106 :LFAQLPEAARMNYQGPVPGTPLP T0506 225 :ASASDLARLW 2ou5A 129 :AEPDATPNRF T0506 235 :FAERVETLKQFEKALAQLLK 2ou5A 144 :HLSEIDVLHLTTPHQRAVYT Number of specific fragments extracted= 10 number of extra gaps= 1 total=13436 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1567220060.pdb -s /var/tmp/to_scwrl_1567220060.seq -o /var/tmp/from_scwrl_1567220060.pdb > /var/tmp/scwrl_1567220060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1567220060.pdb Number of alignments=1680 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set T0506 34 :LHTSRTAALATLDP 2ou5A 25 :HHPARHPTLATIGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=13437 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=13437 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set T0506 56 :ATNIGIEPDGTPFFF 2ou5A 124 :GTPLPAEPDATPNRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=13438 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set T0506 46 :DPVSGYP 2ou5A 120 :GPVPGTP T0506 59 :IGIEPDGTPFFF 2ou5A 127 :LPAEPDATPNRF Number of specific fragments extracted= 2 number of extra gaps= 0 total=13440 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_369369626.pdb -s /var/tmp/to_scwrl_369369626.seq -o /var/tmp/from_scwrl_369369626.pdb > /var/tmp/scwrl_369369626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_369369626.pdb Number of alignments=1681 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)A177 because last residue in template chain is (2ou5A)P174 T0506 15 :KIE 2ou5A 1 :MSD T0506 21 :GAPFEAVRVARDVL 2ou5A 4 :TVLTGLLDTVWQQF T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 129 :RYPKAKLY 2ou5A 121 :PVPGTPLP T0506 140 :PDTRLYRLRTEGVQING 2ou5A 136 :NRFTRLICHLSEIDVLH T0506 157 :GPARNASNITPADLRTDLSG 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 11 number of extra gaps= 1 total=13451 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_911458811.pdb -s /var/tmp/to_scwrl_911458811.seq -o /var/tmp/from_scwrl_911458811.pdb > /var/tmp/scwrl_911458811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_911458811.pdb Number of alignments=1682 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)T149 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVIT 2ou5A 1 :MSDTVLTGLL T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2ou5A 11 :DTVWQQFGRGTKDRHHPARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPKAKLYLSLPDTRLYRLR 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 7 number of extra gaps= 1 total=13458 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_360424366.pdb -s /var/tmp/to_scwrl_360424366.seq -o /var/tmp/from_scwrl_360424366.pdb > /var/tmp/scwrl_360424366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_360424366.pdb Number of alignments=1683 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)T149 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVIT 2ou5A 1 :MSDTVLTGLL T0506 20 :AGAPFEAVRVARDVLHTSRTAALATLDP 2ou5A 11 :DTVWQQFGRGTKDRHHPARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPKAKLYLSLPDTRLYRLR 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 7 number of extra gaps= 1 total=13465 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1231111047.pdb -s /var/tmp/to_scwrl_1231111047.seq -o /var/tmp/from_scwrl_1231111047.pdb > /var/tmp/scwrl_1231111047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1231111047.pdb Number of alignments=1684 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)T149 because last residue in template chain is (2ou5A)P174 T0506 1 :MLD 2ou5A 1 :MSD T0506 21 :GAPFEAVRVARDVLHT 2ou5A 4 :TVLTGLLDTVWQQFGR T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 129 :RYPKAKLYLSLPDTRLYRLR 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 9 number of extra gaps= 1 total=13474 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1425603385.pdb -s /var/tmp/to_scwrl_1425603385.seq -o /var/tmp/from_scwrl_1425603385.pdb > /var/tmp/scwrl_1425603385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1425603385.pdb Number of alignments=1685 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)T149 because last residue in template chain is (2ou5A)P174 T0506 1 :MLD 2ou5A 1 :MSD T0506 21 :GAPFEAVRVARDVLHT 2ou5A 4 :TVLTGLLDTVWQQFGR T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPKAKLYLSLPDTRLYRLR 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 9 number of extra gaps= 1 total=13483 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1473566002.pdb -s /var/tmp/to_scwrl_1473566002.seq -o /var/tmp/from_scwrl_1473566002.pdb > /var/tmp/scwrl_1473566002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473566002.pdb Number of alignments=1686 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)P219 because last residue in template chain is (2ou5A)P174 T0506 22 :APFEAVRVARDVL 2ou5A 1 :MSDTVLTGLLDTV T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTAT 2ou5A 41 :PDLRTL T0506 58 :NIG 2ou5A 48 :LRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPK 2ou5A 121 :PVPG T0506 140 :PDTRLYRLRTEGVQING 2ou5A 136 :NRFTRLICHLSEIDVLH T0506 157 :GPARNASN 2ou5A 155 :TPHQRAVY T0506 208 :KTGRWKITSID 2ou5A 163 :TAPDWRGIWVS Number of specific fragments extracted= 12 number of extra gaps= 1 total=13495 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1845078379.pdb -s /var/tmp/to_scwrl_1845078379.seq -o /var/tmp/from_scwrl_1845078379.pdb > /var/tmp/scwrl_1845078379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845078379.pdb Number of alignments=1687 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)S226 because last residue in template chain is (2ou5A)P174 T0506 22 :APFE 2ou5A 1 :MSDT T0506 26 :AVRVARDVL 2ou5A 9 :LLDTVWQQF T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 130 :YPKAK 2ou5A 122 :VPGTP T0506 140 :PDTRLYRLRTEGVQING 2ou5A 136 :NRFTRLICHLSEIDVLH T0506 205 :AGAKTGRWKITSIDPDGIDLA 2ou5A 153 :LTTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 10 number of extra gaps= 1 total=13505 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_398297942.pdb -s /var/tmp/to_scwrl_398297942.seq -o /var/tmp/from_scwrl_398297942.pdb > /var/tmp/scwrl_398297942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_398297942.pdb Number of alignments=1688 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T14 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)A177 because last residue in template chain is (2ou5A)P174 T0506 15 :KIE 2ou5A 1 :MSD T0506 21 :GAPFEAVRVARDVLHT 2ou5A 4 :TVLTGLLDTVWQQFGR T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 140 :PDTRLYRLRTEGVQING 2ou5A 136 :NRFTRLICHLSEIDVLH T0506 157 :GPARNASNITPADLRTDLSG 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 9 number of extra gaps= 1 total=13514 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1916960567.pdb -s /var/tmp/to_scwrl_1916960567.seq -o /var/tmp/from_scwrl_1916960567.pdb > /var/tmp/scwrl_1916960567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916960567.pdb Number of alignments=1689 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)A177 because last residue in template chain is (2ou5A)P174 T0506 22 :APFE 2ou5A 1 :MSDT T0506 26 :AVRVARDVLHT 2ou5A 9 :LLDTVWQQFGR T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEP 2ou5A 51 :ASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 129 :RYPK 2ou5A 121 :PVPG T0506 140 :PDTRLYRLRTEGVQING 2ou5A 136 :NRFTRLICHLSEIDVLH T0506 157 :GPARNASNITPADLRTDLSG 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 13 number of extra gaps= 1 total=13527 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_99328831.pdb -s /var/tmp/to_scwrl_99328831.seq -o /var/tmp/from_scwrl_99328831.pdb > /var/tmp/scwrl_99328831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_99328831.pdb Number of alignments=1690 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 22 :APFE 2ou5A 1 :MSDT T0506 26 :AVRVARDVLHT 2ou5A 9 :LLDTVWQQFGR T0506 37 :SRTAALATLD 2ou5A 28 :ARHPTLATIG T0506 48 :VSG 2ou5A 38 :TDG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEPDGT 2ou5A 51 :ASHAEA T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2ou5A 58 :LEFHTDAASPKVAHIRRDARVAIHI T0506 93 :PFGK 2ou5A 83 :WIPK T0506 101 :TL 2ou5A 87 :AS T0506 105 :LTLVGRADRI 2ou5A 91 :VRAKAIAKIL T0506 115 :GPD 2ou5A 103 :DPN T0506 126 :YIARYPK 2ou5A 106 :LFAQLPE T0506 133 :AKLYLSL 2ou5A 115 :RMNYQGP T0506 140 :PD 2ou5A 135 :PN T0506 142 :TRLYRLRTEGVQINGGPAR 2ou5A 138 :FTRLICHLSEIDVLHLTTP T0506 228 :SDLARLWFAER 2ou5A 157 :HQRAVYTAPDW Number of specific fragments extracted= 16 number of extra gaps= 1 total=13543 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_501265175.pdb -s /var/tmp/to_scwrl_501265175.seq -o /var/tmp/from_scwrl_501265175.pdb > /var/tmp/scwrl_501265175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501265175.pdb Number of alignments=1691 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)A177 because last residue in template chain is (2ou5A)P174 T0506 22 :APFE 2ou5A 1 :MSDT T0506 26 :AVRVARDVL 2ou5A 9 :LLDTVWQQF T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IE 2ou5A 51 :AS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 54 :AEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPKAKLYLSL 2ou5A 121 :PVPGTPLPAEP T0506 140 :PDTRLYRLRTEGVQINGGPAR 2ou5A 136 :NRFTRLICHLSEIDVLHLTTP T0506 161 :NASNITPADLRTDLSG 2ou5A 158 :QRAVYTAPDWRGIWVS Number of specific fragments extracted= 12 number of extra gaps= 1 total=13555 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1783832163.pdb -s /var/tmp/to_scwrl_1783832163.seq -o /var/tmp/from_scwrl_1783832163.pdb > /var/tmp/scwrl_1783832163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783832163.pdb Number of alignments=1692 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)S226 because last residue in template chain is (2ou5A)P174 T0506 22 :APFE 2ou5A 1 :MSDT T0506 26 :AVRVARDVL 2ou5A 9 :LLDTVWQQF T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 131 :PKAKLY 2ou5A 123 :PGTPLP T0506 140 :PDTRLYRLRTEGVQINGGPA 2ou5A 136 :NRFTRLICHLSEIDVLHLTT T0506 208 :KTGRWKITSIDPDGIDLA 2ou5A 156 :PHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 11 number of extra gaps= 1 total=13566 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_320034905.pdb -s /var/tmp/to_scwrl_320034905.seq -o /var/tmp/from_scwrl_320034905.pdb > /var/tmp/scwrl_320034905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320034905.pdb Number of alignments=1693 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 131 :PKAKLY 2ou5A 123 :PGTPLP T0506 140 :PDTRLYRLRTEGVQ 2ou5A 136 :NRFTRLICHLSEID Number of specific fragments extracted= 8 number of extra gaps= 1 total=13574 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1964044202.pdb -s /var/tmp/to_scwrl_1964044202.seq -o /var/tmp/from_scwrl_1964044202.pdb > /var/tmp/scwrl_1964044202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964044202.pdb Number of alignments=1694 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)T149 because last residue in template chain is (2ou5A)P174 T0506 41 :ALATLDP 2ou5A 32 :TLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPKAKLYLSLPDTRLYRLR 2ou5A 154 :TTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 6 number of extra gaps= 1 total=13580 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1408211108.pdb -s /var/tmp/to_scwrl_1408211108.seq -o /var/tmp/from_scwrl_1408211108.pdb > /var/tmp/scwrl_1408211108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408211108.pdb Number of alignments=1695 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPKAKLYLSLPDTRLYRL 2ou5A 154 :TTPHQRAVYTAPDWRGIWV Number of specific fragments extracted= 6 number of extra gaps= 1 total=13586 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_347940568.pdb -s /var/tmp/to_scwrl_347940568.seq -o /var/tmp/from_scwrl_347940568.pdb > /var/tmp/scwrl_347940568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347940568.pdb Number of alignments=1696 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 129 :RYPKAKLYLSL 2ou5A 121 :PVPGTPLPAEP T0506 140 :PDTRLYRLRTEGVQ 2ou5A 136 :NRFTRLICHLSEID Number of specific fragments extracted= 8 number of extra gaps= 1 total=13594 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1942313788.pdb -s /var/tmp/to_scwrl_1942313788.seq -o /var/tmp/from_scwrl_1942313788.pdb > /var/tmp/scwrl_1942313788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1942313788.pdb Number of alignments=1697 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 40 :AALATLDP 2ou5A 31 :PTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 125 :RYIARYPKA 2ou5A 105 :NLFAQLPEA Number of specific fragments extracted= 7 number of extra gaps= 1 total=13601 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2096765325.pdb -s /var/tmp/to_scwrl_2096765325.seq -o /var/tmp/from_scwrl_2096765325.pdb > /var/tmp/scwrl_2096765325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2096765325.pdb Number of alignments=1698 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 41 :ALATLDP 2ou5A 32 :TLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTAT 2ou5A 41 :PDLRTL T0506 58 :NIG 2ou5A 48 :LRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPK 2ou5A 121 :PVPG T0506 140 :PDTRLYRLRTEGVQIN 2ou5A 136 :NRFTRLICHLSEIDVL Number of specific fragments extracted= 9 number of extra gaps= 1 total=13610 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1647399315.pdb -s /var/tmp/to_scwrl_1647399315.seq -o /var/tmp/from_scwrl_1647399315.pdb > /var/tmp/scwrl_1647399315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647399315.pdb Number of alignments=1699 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 40 :AALATLDP 2ou5A 31 :PTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 130 :YPKAK 2ou5A 122 :VPGTP T0506 140 :PDTRLYRLRTEGVQING 2ou5A 136 :NRFTRLICHLSEIDVLH T0506 205 :AGAKTGRWKITSIDPDGIDL 2ou5A 153 :LTTPHQRAVYTAPDWRGIWV Number of specific fragments extracted= 8 number of extra gaps= 1 total=13618 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1962716296.pdb -s /var/tmp/to_scwrl_1962716296.seq -o /var/tmp/from_scwrl_1962716296.pdb > /var/tmp/scwrl_1962716296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1962716296.pdb Number of alignments=1700 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE Number of specific fragments extracted= 5 number of extra gaps= 1 total=13623 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1794118330.pdb -s /var/tmp/to_scwrl_1794118330.seq -o /var/tmp/from_scwrl_1794118330.pdb > /var/tmp/scwrl_1794118330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794118330.pdb Number of alignments=1701 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 24 :FEAVRVARDVLHT 2ou5A 7 :TGLLDTVWQQFGR T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEP 2ou5A 51 :ASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 129 :RYPK 2ou5A 121 :PVPG T0506 140 :PDTRLYRLRTEGVQINGGPA 2ou5A 136 :NRFTRLICHLSEIDVLHLTT Number of specific fragments extracted= 11 number of extra gaps= 1 total=13634 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_769537346.pdb -s /var/tmp/to_scwrl_769537346.seq -o /var/tmp/from_scwrl_769537346.pdb > /var/tmp/scwrl_769537346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769537346.pdb Number of alignments=1702 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 24 :FEAVRVARDVLHT 2ou5A 7 :TGLLDTVWQQFGR T0506 37 :SRTAALATLD 2ou5A 28 :ARHPTLATIG T0506 48 :VSG 2ou5A 38 :TDG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IEPDGT 2ou5A 51 :ASHAEA T0506 67 :PFFFAAGLTLHARNMETDARISVTL 2ou5A 58 :LEFHTDAASPKVAHIRRDARVAIHI T0506 93 :PFGK 2ou5A 83 :WIPK T0506 101 :TL 2ou5A 87 :AS T0506 105 :LTLVGRADRI 2ou5A 91 :VRAKAIAKIL T0506 115 :GPD 2ou5A 103 :DPN T0506 126 :YIARYPK 2ou5A 106 :LFAQLPE T0506 133 :AKLYLSL 2ou5A 115 :RMNYQGP T0506 140 :PD 2ou5A 135 :PN T0506 142 :TRLYRLRTEGVQINGGPAR 2ou5A 138 :FTRLICHLSEIDVLHLTTP T0506 230 :LARLW 2ou5A 157 :HQRAV Number of specific fragments extracted= 15 number of extra gaps= 1 total=13649 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_734304341.pdb -s /var/tmp/to_scwrl_734304341.seq -o /var/tmp/from_scwrl_734304341.pdb > /var/tmp/scwrl_734304341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_734304341.pdb Number of alignments=1703 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 39 :TAALATLDP 2ou5A 30 :HPTLATIGT T0506 49 :SG 2ou5A 39 :DG T0506 52 :PYTTATNIG 2ou5A 41 :PDLRTLVLR T0506 61 :IE 2ou5A 51 :AS T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 54 :AEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGD T0506 120 :PLAIARYIA 2ou5A 104 :PNLFAQLPE T0506 129 :RYPKAKLYLSL 2ou5A 121 :PVPGTPLPAEP T0506 140 :PDTRLYRLRTEGVQING 2ou5A 136 :NRFTRLICHLSEIDVLH Number of specific fragments extracted= 9 number of extra gaps= 1 total=13658 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_577701058.pdb -s /var/tmp/to_scwrl_577701058.seq -o /var/tmp/from_scwrl_577701058.pdb > /var/tmp/scwrl_577701058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_577701058.pdb Number of alignments=1704 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 38 :RTAALATLDP 2ou5A 29 :RHPTLATIGT T0506 49 :SGYPYTTATNIG 2ou5A 39 :DGPDLRTLVLRA T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 52 :SHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGP 2ou5A 91 :VRAKAIAKILPG T0506 117 :D 2ou5A 104 :P T0506 121 :LAIARYIA 2ou5A 105 :NLFAQLPE T0506 131 :PKAKLY 2ou5A 123 :PGTPLP T0506 140 :PDTRLYRLRTEGVQIN 2ou5A 136 :NRFTRLICHLSEIDVL Number of specific fragments extracted= 8 number of extra gaps= 1 total=13666 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_884337154.pdb -s /var/tmp/to_scwrl_884337154.seq -o /var/tmp/from_scwrl_884337154.pdb > /var/tmp/scwrl_884337154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_884337154.pdb Number of alignments=1705 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)K247 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEA 2ou5A 0 :GMSDTVLTGLLDTVWQQFGRGTKDRH T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL T0506 188 :ATRLNAIKG 2ou5A 142 :ICHLSEIDV T0506 224 :LASASDLARLWFAERVETLKQFE 2ou5A 151 :LHLTTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 9 number of extra gaps= 1 total=13675 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2072422320.pdb -s /var/tmp/to_scwrl_2072422320.seq -o /var/tmp/from_scwrl_2072422320.pdb > /var/tmp/scwrl_2072422320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2072422320.pdb Number of alignments=1706 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P219 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEA 2ou5A 0 :GMSDTVLTGLLDTVWQQFGRGTKDRH T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 98 :DALTLPRLT 2ou5A 103 :DPNLFAQLP T0506 120 :PLAIARYIARYPKA 2ou5A 112 :EAARMNYQGPVPGT T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAK 2ou5A 126 :PLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRAVY T0506 209 :TGRWKITSID 2ou5A 164 :APDWRGIWVS Number of specific fragments extracted= 8 number of extra gaps= 0 total=13683 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1276294898.pdb -s /var/tmp/to_scwrl_1276294898.seq -o /var/tmp/from_scwrl_1276294898.pdb > /var/tmp/scwrl_1276294898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276294898.pdb Number of alignments=1707 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P219 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEA 2ou5A 0 :GMSDTVLTGLLDTVWQQFGRGTKDRH T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 126 :YIARYPKAKLYLS 2ou5A 106 :LFAQLPEAARMNY T0506 164 :NITPADL 2ou5A 119 :QGPVPGT T0506 172 :TDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAK 2ou5A 126 :PLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRAVY T0506 209 :TGRWKITSID 2ou5A 164 :APDWRGIWVS Number of specific fragments extracted= 9 number of extra gaps= 0 total=13692 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_424263647.pdb -s /var/tmp/to_scwrl_424263647.seq -o /var/tmp/from_scwrl_424263647.pdb > /var/tmp/scwrl_424263647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_424263647.pdb Number of alignments=1708 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)P219 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFE 2ou5A 0 :GMSDTVLTGLLDTVWQQFGRGTKDR T0506 34 :LHTSRTAALATLDP 2ou5A 25 :HHPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL T0506 148 :RTEGVQIN 2ou5A 144 :HLSEIDVL T0506 156 :GGPARNASNI 2ou5A 154 :TTPHQRAVYT T0506 209 :TGRWKITSID 2ou5A 164 :APDWRGIWVS Number of specific fragments extracted= 10 number of extra gaps= 1 total=13702 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1494913122.pdb -s /var/tmp/to_scwrl_1494913122.seq -o /var/tmp/from_scwrl_1494913122.pdb > /var/tmp/scwrl_1494913122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494913122.pdb Number of alignments=1709 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)I9 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)S226 because last residue in template chain is (2ou5A)P174 T0506 10 :TPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDP 2ou5A 1 :MSDTVLTGLLDTVWQQFGRGTKDRHHPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 126 :YIARYPKAKLY 2ou5A 106 :LFAQLPEAARM T0506 137 :LSLPDTRLYRL 2ou5A 131 :PDATPNRFTRL T0506 148 :RTEGVQI 2ou5A 147 :EIDVLHL T0506 156 :GGPARNASNITPADLRTDL 2ou5A 154 :TTPHQRAVYTAPDWRGIWV T0506 225 :A 2ou5A 173 :S Number of specific fragments extracted= 9 number of extra gaps= 1 total=13711 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_428944558.pdb -s /var/tmp/to_scwrl_428944558.seq -o /var/tmp/from_scwrl_428944558.pdb > /var/tmp/scwrl_428944558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428944558.pdb Number of alignments=1710 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 21 :GAPFEAVRVARDVLHTSRTA 2ou5A 1 :MSDTVLTGLLDTVWQQFGRG T0506 41 :ALATLDP 2ou5A 32 :TLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 126 :YIARYPKAKLYLS 2ou5A 106 :LFAQLPEAARMNY T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL T0506 148 :RTEGVQI 2ou5A 144 :HLSEIDV T0506 224 :LASASDLARLWFAERVETL 2ou5A 151 :LHLTTPHQRAVYTAPDWRG Number of specific fragments extracted= 9 number of extra gaps= 1 total=13720 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1991483708.pdb -s /var/tmp/to_scwrl_1991483708.seq -o /var/tmp/from_scwrl_1991483708.pdb > /var/tmp/scwrl_1991483708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991483708.pdb Number of alignments=1711 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)S226 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVITPRGTKIE 2ou5A 0 :GMSDTVLTGLLDTVWQQ T0506 26 :AVRVARDVLHTSRTAALATLDP 2ou5A 17 :FGRGTKDRHHPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL T0506 148 :RTEGVQINGG 2ou5A 144 :HLSEIDVLHL T0506 172 :T 2ou5A 154 :T T0506 207 :AKTGRWKITSIDPDGIDLA 2ou5A 155 :TPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 10 number of extra gaps= 1 total=13730 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1864282748.pdb -s /var/tmp/to_scwrl_1864282748.seq -o /var/tmp/from_scwrl_1864282748.pdb > /var/tmp/scwrl_1864282748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864282748.pdb Number of alignments=1712 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)K247 because last residue in template chain is (2ou5A)P174 T0506 1 :MLDVAPPVITPRGTKIEPSAGAPFEA 2ou5A 0 :GMSDTVLTGLLDTVWQQFGRGTKDRH T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL T0506 185 :ESEATRLNAI 2ou5A 142 :ICHLSEIDVL T0506 225 :ASASDLARLWFAERVETLKQFE 2ou5A 152 :HLTTPHQRAVYTAPDWRGIWVS Number of specific fragments extracted= 9 number of extra gaps= 1 total=13739 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1340403369.pdb -s /var/tmp/to_scwrl_1340403369.seq -o /var/tmp/from_scwrl_1340403369.pdb > /var/tmp/scwrl_1340403369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1340403369.pdb Number of alignments=1713 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 21 :GAPFEAVRVARDVLHTSRTA 2ou5A 1 :MSDTVLTGLLDTVWQQFGRG T0506 41 :ALATLDP 2ou5A 32 :TLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRLRTEGVQIN 2ou5A 135 :PNRFTRLICHLSEIDVL T0506 225 :ASASDLARLWFAERVETL 2ou5A 152 :HLTTPHQRAVYTAPDWRG Number of specific fragments extracted= 8 number of extra gaps= 1 total=13747 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_204424427.pdb -s /var/tmp/to_scwrl_204424427.seq -o /var/tmp/from_scwrl_204424427.pdb > /var/tmp/scwrl_204424427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204424427.pdb Number of alignments=1714 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)T241 because last residue in template chain is (2ou5A)P174 T0506 21 :GAPFEAVRVARDVLHTSRTAA 2ou5A 1 :MSDTVLTGLLDTVWQQFGRGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 24 :RHHPARHPTLATIGT T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKA T0506 100 :L 2ou5A 88 :S T0506 103 :PRLTLVGRADRIGPDE 2ou5A 91 :VRAKAIAKILPGDPNL T0506 127 :IARYPK 2ou5A 107 :FAQLPE T0506 133 :AKLYLS 2ou5A 114 :ARMNYQ T0506 139 :LPDTRLYRLRTEGVQIN 2ou5A 135 :PNRFTRLICHLSEIDVL T0506 225 :ASASDLARLWFA 2ou5A 152 :HLTTPHQRAVYT T0506 237 :ERVE 2ou5A 170 :IWVS Number of specific fragments extracted= 10 number of extra gaps= 1 total=13757 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_947910150.pdb -s /var/tmp/to_scwrl_947910150.seq -o /var/tmp/from_scwrl_947910150.pdb > /var/tmp/scwrl_947910150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_947910150.pdb Number of alignments=1715 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)P219 because last residue in template chain is (2ou5A)P174 T0506 21 :GAPFEAVRVARDVLHTSRTA 2ou5A 1 :MSDTVLTGLLDTVWQQFGRG T0506 41 :ALATLDP 2ou5A 32 :TLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPDE 2ou5A 91 :VRAKAIAKILPGDP T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL T0506 148 :RTEGVQING 2ou5A 144 :HLSEIDVLH T0506 157 :GPARNASNITP 2ou5A 155 :TPHQRAVYTAP T0506 211 :RWKITSID 2ou5A 166 :DWRGIWVS Number of specific fragments extracted= 10 number of extra gaps= 1 total=13767 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_618523108.pdb -s /var/tmp/to_scwrl_618523108.seq -o /var/tmp/from_scwrl_618523108.pdb > /var/tmp/scwrl_618523108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_618523108.pdb Number of alignments=1716 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (2ou5A)G0 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 Warning: unaligning (T0506)R238 because last residue in template chain is (2ou5A)P174 T0506 21 :GAPFEAVRVARDVLHT 2ou5A 1 :MSDTVLTGLLDTVWQQ T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL T0506 148 :RTEGVQINGGPARNASNITP 2ou5A 147 :EIDVLHLTTPHQRAVYTAPD T0506 169 :D 2ou5A 167 :W T0506 220 :DGID 2ou5A 168 :RGIW T0506 236 :AE 2ou5A 172 :VS Number of specific fragments extracted= 11 number of extra gaps= 1 total=13778 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1677990429.pdb -s /var/tmp/to_scwrl_1677990429.seq -o /var/tmp/from_scwrl_1677990429.pdb > /var/tmp/scwrl_1677990429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1677990429.pdb Number of alignments=1717 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 36 :TSRTAALATLDP 2ou5A 27 :PARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 127 :IARYPKA 2ou5A 107 :FAQLPEA Number of specific fragments extracted= 5 number of extra gaps= 1 total=13783 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_645504882.pdb -s /var/tmp/to_scwrl_645504882.seq -o /var/tmp/from_scwrl_645504882.pdb > /var/tmp/scwrl_645504882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_645504882.pdb Number of alignments=1718 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPF 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIP Number of specific fragments extracted= 3 number of extra gaps= 0 total=13786 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1016821051.pdb -s /var/tmp/to_scwrl_1016821051.seq -o /var/tmp/from_scwrl_1016821051.pdb > /var/tmp/scwrl_1016821051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016821051.pdb Number of alignments=1719 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set T0506 35 :HTSRTAALATLDP 2ou5A 26 :HPARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=13789 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1447467349.pdb -s /var/tmp/to_scwrl_1447467349.seq -o /var/tmp/from_scwrl_1447467349.pdb > /var/tmp/scwrl_1447467349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1447467349.pdb Number of alignments=1720 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 126 :YIARYPKAKL 2ou5A 106 :LFAQLPEAAR Number of specific fragments extracted= 5 number of extra gaps= 1 total=13794 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_744833713.pdb -s /var/tmp/to_scwrl_744833713.seq -o /var/tmp/from_scwrl_744833713.pdb > /var/tmp/scwrl_744833713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_744833713.pdb Number of alignments=1721 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 38 :RTAALATLDP 2ou5A 29 :RHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPDE 2ou5A 91 :VRAKAIAKILPGDP T0506 125 :RYIARYPKAK 2ou5A 105 :NLFAQLPEAA Number of specific fragments extracted= 5 number of extra gaps= 1 total=13799 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1518086225.pdb -s /var/tmp/to_scwrl_1518086225.seq -o /var/tmp/from_scwrl_1518086225.pdb > /var/tmp/scwrl_1518086225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518086225.pdb Number of alignments=1722 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 38 :RTAALATLDP 2ou5A 29 :RHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 126 :YIARYPKAKLYL 2ou5A 106 :LFAQLPEAARMN Number of specific fragments extracted= 5 number of extra gaps= 1 total=13804 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1083815865.pdb -s /var/tmp/to_scwrl_1083815865.seq -o /var/tmp/from_scwrl_1083815865.pdb > /var/tmp/scwrl_1083815865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1083815865.pdb Number of alignments=1723 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRL 2ou5A 133 :ATPNRFTRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=13810 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1064868619.pdb -s /var/tmp/to_scwrl_1064868619.seq -o /var/tmp/from_scwrl_1064868619.pdb > /var/tmp/scwrl_1064868619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064868619.pdb Number of alignments=1724 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set T0506 37 :SRTAALATLDP 2ou5A 28 :ARHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=13813 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1334646781.pdb -s /var/tmp/to_scwrl_1334646781.seq -o /var/tmp/from_scwrl_1334646781.pdb > /var/tmp/scwrl_1334646781.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1334646781.pdb Number of alignments=1725 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 41 :ALATLDP 2ou5A 32 :TLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPKAKLYLS 2ou5A 111 :PEAARMNYQGPVPGTPLPAE T0506 139 :LPDTRLYRLRTEGVQIN 2ou5A 135 :PNRFTRLICHLSEIDVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=13819 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_344543328.pdb -s /var/tmp/to_scwrl_344543328.seq -o /var/tmp/from_scwrl_344543328.pdb > /var/tmp/scwrl_344543328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_344543328.pdb Number of alignments=1726 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2ou5A 51 :ASHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKA T0506 100 :L 2ou5A 88 :S T0506 103 :PRLTLVGRADRIGPDE 2ou5A 91 :VRAKAIAKILPGDPNL T0506 127 :IARYPK 2ou5A 107 :FAQLPE T0506 133 :AKLYLS 2ou5A 114 :ARMNYQ T0506 139 :LPDTRLYRLRTEGVQING 2ou5A 135 :PNRFTRLICHLSEIDVLH T0506 226 :SASDLARLWF 2ou5A 153 :LTTPHQRAVY Number of specific fragments extracted= 7 number of extra gaps= 1 total=13826 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1412809186.pdb -s /var/tmp/to_scwrl_1412809186.seq -o /var/tmp/from_scwrl_1412809186.pdb > /var/tmp/scwrl_1412809186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1412809186.pdb Number of alignments=1727 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 41 :ALATLDP 2ou5A 32 :TLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 105 :LTLVGRADRIGPDE 2ou5A 91 :VRAKAIAKILPGDP T0506 125 :RYIARYPKAKLYL 2ou5A 105 :NLFAQLPEAARMN Number of specific fragments extracted= 5 number of extra gaps= 1 total=13831 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1129476922.pdb -s /var/tmp/to_scwrl_1129476922.seq -o /var/tmp/from_scwrl_1129476922.pdb > /var/tmp/scwrl_1129476922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1129476922.pdb Number of alignments=1728 # 2ou5A read from all-align.a2m # found chain 2ou5A in template set Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2ou5A)Q90 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2ou5A)Q90 T0506 38 :RTAALATLDP 2ou5A 29 :RHPTLATIGT T0506 49 :SGYPYTTATNIGIEP 2ou5A 39 :DGPDLRTLVLRAASH T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2ou5A 55 :EATLEFHTDAASPKVAHIRRDARVAIHIWIPKAS T0506 103 :PRLTLVGRADRIGPD 2ou5A 91 :VRAKAIAKILPGDPN T0506 119 :VPLAIARYIARYPK 2ou5A 111 :PEAARMNYQGPVPG Number of specific fragments extracted= 5 number of extra gaps= 1 total=13836 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_293825006.pdb -s /var/tmp/to_scwrl_293825006.seq -o /var/tmp/from_scwrl_293825006.pdb > /var/tmp/scwrl_293825006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_293825006.pdb Number of alignments=1729 2q9kA expands to /projects/compbio/data/pdb/2q9k.pdb.gz 2q9kA:Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 72, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 74, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 76, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 2q9kA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 327, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 364, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 566, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 570, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 572, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 574, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 576, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 673, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 677, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 679, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 681, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 914, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 916, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 918, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 920, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 922, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 2q9kA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1129, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1131, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1133, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1135, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1156, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1160, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 2q9kA Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 2q9kA # 2q9kA read from all-align.a2m # adding 2q9kA to template set # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAA 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAI T0506 73 :GLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRI 2q9kA 57 :ADSLLVKTLADHPVFTLIFFADQSTYSLTCTDVAAWETTARL T0506 120 :PLAIARYIARYPKAK 2q9kA 99 :PLKVALYEGQIKEVR T0506 141 :DTRLY 2q9kA 114 :DILFY T0506 151 :GVQINGGPARNASNITPADLRTD 2q9kA 119 :GAAVSDRPRVYKTYDEAAAMQLD T0506 246 :EKALAQLLK 2q9kA 142 :QQIQDILKG Number of specific fragments extracted= 6 number of extra gaps= 0 total=13842 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_912724856.pdb -s /var/tmp/to_scwrl_912724856.seq -o /var/tmp/from_scwrl_912724856.pdb > /var/tmp/scwrl_912724856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912724856.pdb Number of alignments=1730 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2q9kA)K4 T0506 16 :IEPS 2q9kA 5 :VEHR T0506 26 :AVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGL 2q9kA 9 :LSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEA T0506 75 :TLHARNMETDARISVTL 2q9kA 59 :SLLVKTLADHPVFTLIF T0506 94 :FGKGDALTLP 2q9kA 76 :FADQSTYSLT T0506 107 :LVGRADRIGPDEVPLAIA 2q9kA 86 :CTDVAAWETTARLPLKVA T0506 139 :LPDTRLYRLR 2q9kA 104 :LYEGQIKEVR T0506 179 :ELM 2q9kA 114 :DIL T0506 204 :LAGAK 2q9kA 117 :FYGAA T0506 216 :SIDP 2q9kA 123 :SDRP T0506 221 :GIDLASASDLA 2q9kA 131 :TYDEAAAMQLD T0506 246 :EKALAQLLK 2q9kA 142 :QQIQDILKG Number of specific fragments extracted= 11 number of extra gaps= 0 total=13853 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_944709573.pdb -s /var/tmp/to_scwrl_944709573.seq -o /var/tmp/from_scwrl_944709573.pdb > /var/tmp/scwrl_944709573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944709573.pdb Number of alignments=1731 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 32 :DVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAA 2q9kA 15 :KALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=13854 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2087943336.pdb -s /var/tmp/to_scwrl_2087943336.seq -o /var/tmp/from_scwrl_2087943336.pdb > /var/tmp/scwrl_2087943336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087943336.pdb Number of alignments=1732 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 32 :DVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGL 2q9kA 15 :KALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEA T0506 75 :TLHARNMETDA 2q9kA 59 :SLLVKTLADHP Number of specific fragments extracted= 2 number of extra gaps= 0 total=13856 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1682262201.pdb -s /var/tmp/to_scwrl_1682262201.seq -o /var/tmp/from_scwrl_1682262201.pdb > /var/tmp/scwrl_1682262201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682262201.pdb Number of alignments=1733 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)A182 because last residue in template chain is (2q9kA)G150 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFA 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFA T0506 81 :METDARISVTLAPF 2q9kA 55 :IEADSLLVKTLADH T0506 101 :TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELM 2q9kA 69 :PVFTLIFFADQSTYSLTCTDVAAWETTARLPLKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 3 number of extra gaps= 0 total=13859 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1679013913.pdb -s /var/tmp/to_scwrl_1679013913.seq -o /var/tmp/from_scwrl_1679013913.pdb > /var/tmp/scwrl_1679013913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1679013913.pdb Number of alignments=1734 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)K15 because first residue in template chain is (2q9kA)K4 T0506 16 :IEPSAGAP 2q9kA 5 :VEHRLSEQ T0506 30 :ARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGL 2q9kA 13 :QMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEA T0506 75 :TLHARNMETDAR 2q9kA 59 :SLLVKTLADHPV T0506 89 :VTLAPFGKGDALTLPRLTLV 2q9kA 71 :FTLIFFADQSTYSLTCTDVA T0506 112 :DRIGPDEVPLAIARYIARYPKAK 2q9kA 91 :AWETTARLPLKVALYEGQIKEVR T0506 141 :DTRLY 2q9kA 114 :DILFY T0506 151 :GVQINGGPARNASNITPADLRTDLSGAEELM 2q9kA 119 :GAAVSDRPRVYKTYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 7 number of extra gaps= 0 total=13866 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_518160747.pdb -s /var/tmp/to_scwrl_518160747.seq -o /var/tmp/from_scwrl_518160747.pdb > /var/tmp/scwrl_518160747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_518160747.pdb Number of alignments=1735 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 32 :DVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFA 2q9kA 15 :KALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13867 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_419115709.pdb -s /var/tmp/to_scwrl_419115709.seq -o /var/tmp/from_scwrl_419115709.pdb > /var/tmp/scwrl_419115709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419115709.pdb Number of alignments=1736 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 33 :VLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGL 2q9kA 16 :ALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEA T0506 75 :TLHARNMETD 2q9kA 59 :SLLVKTLADH Number of specific fragments extracted= 2 number of extra gaps= 0 total=13869 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1603952587.pdb -s /var/tmp/to_scwrl_1603952587.seq -o /var/tmp/from_scwrl_1603952587.pdb > /var/tmp/scwrl_1603952587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603952587.pdb Number of alignments=1737 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 42 :LATLDPVSGYPYTTATNIGIEPDGTPFFFA 2q9kA 25 :LITHDQSKSWPITHAISWVYAKDETTIRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=13870 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1794455646.pdb -s /var/tmp/to_scwrl_1794455646.seq -o /var/tmp/from_scwrl_1794455646.pdb > /var/tmp/scwrl_1794455646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794455646.pdb Number of alignments=1738 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 43 :ATLDPVSGYPYTTATNIGIEPDGTPFFFA 2q9kA 26 :ITHDQSKSWPITHAISWVYAKDETTIRFA T0506 81 :METDARISVTL 2q9kA 55 :IEADSLLVKTL Number of specific fragments extracted= 2 number of extra gaps= 0 total=13872 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_843379356.pdb -s /var/tmp/to_scwrl_843379356.seq -o /var/tmp/from_scwrl_843379356.pdb > /var/tmp/scwrl_843379356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843379356.pdb Number of alignments=1739 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 2q9kA 82 :YSLTCTDVAAWETTARLPLKVALYEGQIKEVRDILF T0506 158 :PAR 2q9kA 118 :YGA T0506 162 :ASNITPADLRT 2q9kA 121 :AVSDRPRVYKT T0506 237 :ERVETLKQFEKALAQLLK 2q9kA 132 :YDEAAAMQLDQQIQDILK Number of specific fragments extracted= 6 number of extra gaps= 0 total=13878 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_951382063.pdb -s /var/tmp/to_scwrl_951382063.seq -o /var/tmp/from_scwrl_951382063.pdb > /var/tmp/scwrl_951382063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_951382063.pdb Number of alignments=1740 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 98 :DALTLPRLTLVGRADRIGP 2q9kA 96 :ARLPLKVALYEGQIKEVRD T0506 117 :DEVPLAIARYIARYPKAK 2q9kA 119 :GAAVSDRPRVYKTYDEAA T0506 242 :LKQFEKALAQLLK 2q9kA 137 :AMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=13883 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_75916557.pdb -s /var/tmp/to_scwrl_75916557.seq -o /var/tmp/from_scwrl_75916557.pdb > /var/tmp/scwrl_75916557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75916557.pdb Number of alignments=1741 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 98 :DALTLPRLTLVGRADRIGP 2q9kA 96 :ARLPLKVALYEGQIKEVRD T0506 117 :DEVPLAIARYIARYPKA 2q9kA 119 :GAAVSDRPRVYKTYDEA T0506 241 :TLKQFEKALAQLLK 2q9kA 136 :AAMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=13888 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_687379417.pdb -s /var/tmp/to_scwrl_687379417.seq -o /var/tmp/from_scwrl_687379417.pdb > /var/tmp/scwrl_687379417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_687379417.pdb Number of alignments=1742 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGP 2q9kA 82 :YSLTCTDVAAWETT T0506 136 :YLSLPDTRLYRLRTEGVQINGGPARNASNIT 2q9kA 96 :ARLPLKVALYEGQIKEVRDILFYGAAVSDRP T0506 232 :RLWFAERVETLKQFEKALAQLLK 2q9kA 127 :RVYKTYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=13893 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_668181165.pdb -s /var/tmp/to_scwrl_668181165.seq -o /var/tmp/from_scwrl_668181165.pdb > /var/tmp/scwrl_668181165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668181165.pdb Number of alignments=1743 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKD T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 49 :TTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNIT 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSDRP T0506 232 :RLWFAERVETLKQFEKALAQLLK 2q9kA 127 :RVYKTYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=13898 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1416319926.pdb -s /var/tmp/to_scwrl_1416319926.seq -o /var/tmp/from_scwrl_1416319926.pdb > /var/tmp/scwrl_1416319926.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416319926.pdb Number of alignments=1744 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWV T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 45 :AKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNITP 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSDRPR T0506 233 :LWFAERVETLKQFEKALAQLLK 2q9kA 128 :VYKTYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=13903 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_891803845.pdb -s /var/tmp/to_scwrl_891803845.seq -o /var/tmp/from_scwrl_891803845.pdb > /var/tmp/scwrl_891803845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_891803845.pdb Number of alignments=1745 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNITP 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSDRPR T0506 169 :DL 2q9kA 128 :VY T0506 181 :MAAAE 2q9kA 130 :KTYDE T0506 240 :ETLKQFEKALAQLLK 2q9kA 135 :AAAMQLDQQIQDILK Number of specific fragments extracted= 7 number of extra gaps= 0 total=13910 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1616091314.pdb -s /var/tmp/to_scwrl_1616091314.seq -o /var/tmp/from_scwrl_1616091314.pdb > /var/tmp/scwrl_1616091314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1616091314.pdb Number of alignments=1746 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 98 :DALTLPRLTLVGRADRIGP 2q9kA 96 :ARLPLKVALYEGQIKEVRD T0506 131 :PKAKLYLSLPDTR 2q9kA 117 :FYGAAVSDRPRVY T0506 165 :IT 2q9kA 130 :KT T0506 175 :SGA 2q9kA 132 :YDE T0506 240 :ETLKQFEKALAQLLK 2q9kA 135 :AAAMQLDQQIQDILK Number of specific fragments extracted= 7 number of extra gaps= 0 total=13917 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2034843035.pdb -s /var/tmp/to_scwrl_2034843035.seq -o /var/tmp/from_scwrl_2034843035.pdb > /var/tmp/scwrl_2034843035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2034843035.pdb Number of alignments=1747 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWV T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2q9kA 45 :AKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQS T0506 104 :RLTLVGR 2q9kA 81 :TYSLTCT T0506 111 :ADRIGP 2q9kA 89 :VAAWET T0506 117 :D 2q9kA 96 :A T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNITP 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSDRPR T0506 173 :DLSGAEEL 2q9kA 128 :VYKTYDEA T0506 241 :TLKQFEKALAQLLK 2q9kA 136 :AAMQLDQQIQDILK Number of specific fragments extracted= 8 number of extra gaps= 0 total=13925 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_422310627.pdb -s /var/tmp/to_scwrl_422310627.seq -o /var/tmp/from_scwrl_422310627.pdb > /var/tmp/scwrl_422310627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422310627.pdb Number of alignments=1748 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)V4 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)A193 because last residue in template chain is (2q9kA)G150 T0506 5 :APPVIT 2q9kA 5 :VEHRLS T0506 28 :RVARDVLHTSRTAALATLDPVSGYPYTTAT 2q9kA 11 :EQQMKALTDLPLVFLITHDQSKSWPITHAI T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 42 :WVYAKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 103 :PRLTLVGR 2q9kA 80 :STYSLTCT T0506 111 :ADRIGPD 2q9kA 89 :VAAWETT T0506 137 :LSL 2q9kA 96 :ARL T0506 140 :PDTRLYRLRTEGVQINGGPARNASNIT 2q9kA 100 :LKVALYEGQIKEVRDILFYGAAVSDRP T0506 175 :SGAEELMAAAESEATRLN 2q9kA 132 :YDEAAAMQLDQQIQDILK Number of specific fragments extracted= 8 number of extra gaps= 0 total=13933 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_114112549.pdb -s /var/tmp/to_scwrl_114112549.seq -o /var/tmp/from_scwrl_114112549.pdb > /var/tmp/scwrl_114112549.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_114112549.pdb Number of alignments=1749 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWV T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 45 :AKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNITP 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSDRPR T0506 179 :ELMAAAES 2q9kA 128 :VYKTYDEA T0506 241 :TLKQFEKALAQLLK 2q9kA 136 :AAMQLDQQIQDILK Number of specific fragments extracted= 6 number of extra gaps= 0 total=13939 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_904180439.pdb -s /var/tmp/to_scwrl_904180439.seq -o /var/tmp/from_scwrl_904180439.pdb > /var/tmp/scwrl_904180439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_904180439.pdb Number of alignments=1750 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEP 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNITP 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSDRPR T0506 233 :LWFAERVETLKQFEKALAQLLK 2q9kA 128 :VYKTYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=13944 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1869777977.pdb -s /var/tmp/to_scwrl_1869777977.seq -o /var/tmp/from_scwrl_1869777977.pdb > /var/tmp/scwrl_1869777977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1869777977.pdb Number of alignments=1751 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIARYPKA 2q9kA 82 :YSLTCTDVAAWETTARLPLKVALYEGQIKEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=13947 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_858946262.pdb -s /var/tmp/to_scwrl_858946262.seq -o /var/tmp/from_scwrl_858946262.pdb > /var/tmp/scwrl_858946262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_858946262.pdb Number of alignments=1752 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLV 2q9kA 82 :YSLTCT Number of specific fragments extracted= 3 number of extra gaps= 0 total=13950 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_274783017.pdb -s /var/tmp/to_scwrl_274783017.seq -o /var/tmp/from_scwrl_274783017.pdb > /var/tmp/scwrl_274783017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_274783017.pdb Number of alignments=1753 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTL 2q9kA 82 :YSLTC Number of specific fragments extracted= 3 number of extra gaps= 0 total=13953 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_806110196.pdb -s /var/tmp/to_scwrl_806110196.seq -o /var/tmp/from_scwrl_806110196.pdb > /var/tmp/scwrl_806110196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_806110196.pdb Number of alignments=1754 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 26 :AVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 9 :LSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTL 2q9kA 82 :YSLTC Number of specific fragments extracted= 3 number of extra gaps= 0 total=13956 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1923814880.pdb -s /var/tmp/to_scwrl_1923814880.seq -o /var/tmp/from_scwrl_1923814880.pdb > /var/tmp/scwrl_1923814880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923814880.pdb Number of alignments=1755 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 28 :RVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPD 2q9kA 11 :EQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKD T0506 65 :GTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 49 :TTIRFAIEADSLLVKTLADHPVFTLIFFADQST Number of specific fragments extracted= 2 number of extra gaps= 0 total=13958 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1609429798.pdb -s /var/tmp/to_scwrl_1609429798.seq -o /var/tmp/from_scwrl_1609429798.pdb > /var/tmp/scwrl_1609429798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1609429798.pdb Number of alignments=1756 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWV T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 45 :AKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=13962 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1150653523.pdb -s /var/tmp/to_scwrl_1150653523.seq -o /var/tmp/from_scwrl_1150653523.pdb > /var/tmp/scwrl_1150653523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1150653523.pdb Number of alignments=1757 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 6 :EHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNAS 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVS T0506 175 :SGAEELMAAAESEATRLNAIKG 2q9kA 124 :DRPRVYKTYDEAAAMQLDQQIQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=13967 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1189140420.pdb -s /var/tmp/to_scwrl_1189140420.seq -o /var/tmp/from_scwrl_1189140420.pdb > /var/tmp/scwrl_1189140420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189140420.pdb Number of alignments=1758 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGT 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDET T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 51 :IRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 98 :DALTLPRLTLVGRADRI 2q9kA 96 :ARLPLKVALYEGQIKEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=13970 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_591423075.pdb -s /var/tmp/to_scwrl_591423075.seq -o /var/tmp/from_scwrl_591423075.pdb > /var/tmp/scwrl_591423075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_591423075.pdb Number of alignments=1759 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)G21 because first residue in template chain is (2q9kA)K4 T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWV T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2q9kA 45 :AKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQS T0506 104 :RLTLVGR 2q9kA 81 :TYSLTCT T0506 111 :ADRIGP 2q9kA 89 :VAAWET T0506 117 :D 2q9kA 96 :A T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASNITP 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSDRPR T0506 169 :DLR 2q9kA 128 :VYK T0506 174 :LSGAEELMAAAESEATRL 2q9kA 131 :TYDEAAAMQLDQQIQDIL Number of specific fragments extracted= 8 number of extra gaps= 0 total=13978 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1444478530.pdb -s /var/tmp/to_scwrl_1444478530.seq -o /var/tmp/from_scwrl_1444478530.pdb > /var/tmp/scwrl_1444478530.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1444478530.pdb Number of alignments=1760 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 5 :APPVI 2q9kA 5 :VEHRL T0506 27 :VRVARDVLHTSRTAALATLDPVSGYPYTTAT 2q9kA 10 :SEQQMKALTDLPLVFLITHDQSKSWPITHAI T0506 58 :NIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 42 :WVYAKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 103 :PRLTLVGR 2q9kA 80 :STYSLTCT T0506 111 :ADRIGPD 2q9kA 89 :VAAWETT T0506 137 :LSL 2q9kA 96 :ARL T0506 140 :PDTRLYRLRTEGVQINGGPARNASNIT 2q9kA 100 :LKVALYEGQIKEVRDILFYGAAVSDRP T0506 175 :SGAEELMAAAESEATRLN 2q9kA 132 :YDEAAAMQLDQQIQDILK Number of specific fragments extracted= 8 number of extra gaps= 0 total=13986 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2101865276.pdb -s /var/tmp/to_scwrl_2101865276.seq -o /var/tmp/from_scwrl_2101865276.pdb > /var/tmp/scwrl_2101865276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101865276.pdb Number of alignments=1761 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 22 :APFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG 2q9kA 5 :VEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWV T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 45 :AKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPARNASN 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGAAVSD T0506 176 :GAEELMAAAESEATRLNAIKGEAS 2q9kA 125 :RPRVYKTYDEAAAMQLDQQIQDIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=13991 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1536132647.pdb -s /var/tmp/to_scwrl_1536132647.seq -o /var/tmp/from_scwrl_1536132647.pdb > /var/tmp/scwrl_1536132647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536132647.pdb Number of alignments=1762 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 26 :AVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEP 2q9kA 9 :LSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPD 2q9kA 82 :YSLTCTDVAAWETTA T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2q9kA 97 :RLPLKVALYEGQIKEVRDILFYGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=13995 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1384938219.pdb -s /var/tmp/to_scwrl_1384938219.seq -o /var/tmp/from_scwrl_1384938219.pdb > /var/tmp/scwrl_1384938219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384938219.pdb Number of alignments=1763 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 11 :PRGTKIEPSAGAPFEAVRV 2q9kA 5 :VEHRLSEQQMKALTDLPLV T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLP 2q9kA 82 :YSLTCTDVAAWETTARLPLKVALYEGQIKEVRDILFYG T0506 160 :RNASNITPAD 2q9kA 120 :AAVSDRPRVY T0506 231 :ARLWFAERVETLKQFEKALA 2q9kA 130 :KTYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 6 number of extra gaps= 0 total=14001 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1636643830.pdb -s /var/tmp/to_scwrl_1636643830.seq -o /var/tmp/from_scwrl_1636643830.pdb > /var/tmp/scwrl_1636643830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1636643830.pdb Number of alignments=1764 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)A193 because last residue in template chain is (2q9kA)G150 T0506 11 :PRGTKIEPSAGAPFEAVRV 2q9kA 5 :VEHRLSEQQMKALTDLPLV T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGP 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQSTYSLTCTDVAAWETTARLPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITPADLRTDL 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDE T0506 178 :EELMAAAESEATRLN 2q9kA 135 :AAAMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=14006 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1067662914.pdb -s /var/tmp/to_scwrl_1067662914.seq -o /var/tmp/from_scwrl_1067662914.pdb > /var/tmp/scwrl_1067662914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1067662914.pdb Number of alignments=1765 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 11 :PRGTKIEPSAGAPFEAVRV 2q9kA 5 :VEHRLSEQQMKALTDLPLV T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLT 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQSTYSLTCTDVA T0506 112 :DRIGPDEVPLAI 2q9kA 91 :AWETTARLPLKV T0506 143 :RLYRLRTEGVQINGGPARNASNITPADLRTDLS 2q9kA 103 :ALYEGQIKEVRDILFYGAAVSDRPRVYKTYDEA T0506 179 :ELMAAA 2q9kA 136 :AAMQLD T0506 243 :KQFEKALA 2q9kA 142 :QQIQDILK Number of specific fragments extracted= 7 number of extra gaps= 0 total=14013 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1903098967.pdb -s /var/tmp/to_scwrl_1903098967.seq -o /var/tmp/from_scwrl_1903098967.pdb > /var/tmp/scwrl_1903098967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903098967.pdb Number of alignments=1766 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 6 :PPVITPRGTKIEPSAGA 2q9kA 5 :VEHRLSEQQMKALTDLP T0506 39 :TAALATLDPVSGYPYTTATNIGIEP 2q9kA 22 :LVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGP 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQSTYSLTCTDVAAWETTARLPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITPADL 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPRVYK T0506 174 :LSGAEELMAAAESEATRLN 2q9kA 131 :TYDEAAAMQLDQQIQDILK Number of specific fragments extracted= 5 number of extra gaps= 0 total=14018 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2055759539.pdb -s /var/tmp/to_scwrl_2055759539.seq -o /var/tmp/from_scwrl_2055759539.pdb > /var/tmp/scwrl_2055759539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2055759539.pdb Number of alignments=1767 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 6 :PPVITPRGTKIEPSAG 2q9kA 5 :VEHRLSEQQMKALTDL T0506 38 :RTAALATLDPVSGYPYTTATNIGIEP 2q9kA 21 :PLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDE 2q9kA 82 :YSLTCTDVAAWETTAR T0506 135 :LYL 2q9kA 98 :LPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITPADLRTDL 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDE T0506 178 :EELMAAAESEAT 2q9kA 135 :AAAMQLDQQIQD T0506 248 :ALA 2q9kA 147 :ILK Number of specific fragments extracted= 8 number of extra gaps= 0 total=14026 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_524131854.pdb -s /var/tmp/to_scwrl_524131854.seq -o /var/tmp/from_scwrl_524131854.pdb > /var/tmp/scwrl_524131854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_524131854.pdb Number of alignments=1768 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 6 :PPVITPRGTKIEPSAGA 2q9kA 5 :VEHRLSEQQMKALTDLP T0506 39 :TAALATLDPVSGYPYTTATNIGIEP 2q9kA 22 :LVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 101 :TLPRLTLVGRADRIGPDEVP 2q9kA 80 :STYSLTCTDVAAWETTARLP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTDL 2q9kA 100 :LKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDE T0506 178 :EELMAAAESEATRLN 2q9kA 135 :AAAMQLDQQIQDILK Number of specific fragments extracted= 6 number of extra gaps= 0 total=14032 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1550070966.pdb -s /var/tmp/to_scwrl_1550070966.seq -o /var/tmp/from_scwrl_1550070966.pdb > /var/tmp/scwrl_1550070966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550070966.pdb Number of alignments=1769 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 6 :PPVITPRGTKIEPSAGA 2q9kA 5 :VEHRLSEQQMKALTDLP T0506 39 :TAALATLDPVSGYPYTTATNIGIEP 2q9kA 22 :LVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDE 2q9kA 82 :YSLTCTDVAAWETTAR T0506 130 :YP 2q9kA 98 :LP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTDL 2q9kA 100 :LKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDE T0506 178 :EELMAAAESEATRL 2q9kA 135 :AAAMQLDQQIQDIL T0506 250 :A 2q9kA 149 :K Number of specific fragments extracted= 8 number of extra gaps= 0 total=14040 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_751655249.pdb -s /var/tmp/to_scwrl_751655249.seq -o /var/tmp/from_scwrl_751655249.pdb > /var/tmp/scwrl_751655249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_751655249.pdb Number of alignments=1770 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)T10 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 11 :PRGTKIEPSAGAPFEAVR 2q9kA 5 :VEHRLSEQQMKALTDLPL T0506 40 :AALATLDPVSGYPYTTATNIGIEP 2q9kA 23 :VFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRL 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQSTYSLTCTDV T0506 112 :DRIGPDE 2q9kA 90 :AAWETTA T0506 119 :VPL 2q9kA 98 :LPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITPADLRTDLS 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDEA T0506 237 :ERVETLKQFEKALA 2q9kA 136 :AAMQLDQQIQDILK Number of specific fragments extracted= 7 number of extra gaps= 0 total=14047 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1475513917.pdb -s /var/tmp/to_scwrl_1475513917.seq -o /var/tmp/from_scwrl_1475513917.pdb > /var/tmp/scwrl_1475513917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475513917.pdb Number of alignments=1771 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 18 :PSAGAPFEAVRV 2q9kA 5 :VEHRLSEQQMKA T0506 34 :LHTSRTAALATLDPVSGYPYTTATNIGIEP 2q9kA 17 :LTDLPLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQS T0506 104 :RLTLVGR 2q9kA 81 :TYSLTCT T0506 111 :ADRIGPDE 2q9kA 89 :VAAWETTA T0506 134 :KLYL 2q9kA 97 :RLPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITP 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPR T0506 171 :RTDLSGAEELMAAA 2q9kA 128 :VYKTYDEAAAMQLD T0506 243 :KQFEKALA 2q9kA 142 :QQIQDILK Number of specific fragments extracted= 9 number of extra gaps= 0 total=14056 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1625987523.pdb -s /var/tmp/to_scwrl_1625987523.seq -o /var/tmp/from_scwrl_1625987523.pdb > /var/tmp/scwrl_1625987523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1625987523.pdb Number of alignments=1772 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2q9kA)K4 T0506 18 :PSAGAPFEAVRV 2q9kA 5 :VEHRLSEQQMKA T0506 38 :RTAALATLDPVSGYPYTTATNIGIEP 2q9kA 21 :PLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 103 :PRLTLVGR 2q9kA 80 :STYSLTCT T0506 111 :ADRIGPDE 2q9kA 89 :VAAWETTA T0506 139 :LPDTRLYRLRTEGVQINGGPARN 2q9kA 99 :PLKVALYEGQIKEVRDILFYGAA T0506 174 :LS 2q9kA 122 :VS T0506 229 :DL 2q9kA 124 :DR T0506 234 :WFAERVETLK 2q9kA 126 :PRVYKTYDEA T0506 244 :QFEKALAQLL 2q9kA 139 :QLDQQIQDIL Number of specific fragments extracted= 10 number of extra gaps= 0 total=14066 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1439034665.pdb -s /var/tmp/to_scwrl_1439034665.seq -o /var/tmp/from_scwrl_1439034665.pdb > /var/tmp/scwrl_1439034665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1439034665.pdb Number of alignments=1773 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 6 :PPVITPRGTKIEPSAG 2q9kA 5 :VEHRLSEQQMKALTDL T0506 38 :RTAALATLDPVSGYPYTTATNIGIEP 2q9kA 21 :PLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDE 2q9kA 82 :YSLTCTDVAAWETTAR T0506 137 :L 2q9kA 98 :L T0506 139 :LPDTRLYRLRTEGVQINGGPARNASNITPA 2q9kA 99 :PLKVALYEGQIKEVRDILFYGAAVSDRPRV T0506 172 :TDLSGAEELMAAAESEATRL 2q9kA 129 :YKTYDEAAAMQLDQQIQDIL T0506 250 :A 2q9kA 149 :K Number of specific fragments extracted= 8 number of extra gaps= 0 total=14074 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2143695082.pdb -s /var/tmp/to_scwrl_2143695082.seq -o /var/tmp/from_scwrl_2143695082.pdb > /var/tmp/scwrl_2143695082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143695082.pdb Number of alignments=1774 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2q9kA)K4 Warning: unaligning (T0506)Q251 because last residue in template chain is (2q9kA)G150 T0506 18 :PSAGAPFEAVRV 2q9kA 5 :VEHRLSEQQMKA T0506 33 :V 2q9kA 17 :L T0506 35 :HTSRTAALATLDPVSGYPYTTATNIGIEP 2q9kA 18 :TDLPLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 101 :TLPRLTLVGRADRIGPDEVPL 2q9kA 80 :STYSLTCTDVAAWETTARLPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITPA 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPRV T0506 172 :TDLSGAEELMAAAESEATRL 2q9kA 129 :YKTYDEAAAMQLDQQIQDIL T0506 250 :A 2q9kA 149 :K Number of specific fragments extracted= 8 number of extra gaps= 0 total=14082 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_894823804.pdb -s /var/tmp/to_scwrl_894823804.seq -o /var/tmp/from_scwrl_894823804.pdb > /var/tmp/scwrl_894823804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_894823804.pdb Number of alignments=1775 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 44 :TLDPVSGYPYTTATNIGIEP 2q9kA 27 :THDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST Number of specific fragments extracted= 2 number of extra gaps= 0 total=14084 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_183354863.pdb -s /var/tmp/to_scwrl_183354863.seq -o /var/tmp/from_scwrl_183354863.pdb > /var/tmp/scwrl_183354863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_183354863.pdb Number of alignments=1776 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 44 :TLDPVSGYPYTTATNIGIEP 2q9kA 27 :THDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRL 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQSTYSLTCTDV Number of specific fragments extracted= 2 number of extra gaps= 0 total=14086 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1612302749.pdb -s /var/tmp/to_scwrl_1612302749.seq -o /var/tmp/from_scwrl_1612302749.pdb > /var/tmp/scwrl_1612302749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1612302749.pdb Number of alignments=1777 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 66 :TPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 50 :TIRFAIEADSLLVKTLADHPVFTLIFFADQST Number of specific fragments extracted= 1 number of extra gaps= 0 total=14087 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_782183192.pdb -s /var/tmp/to_scwrl_782183192.seq -o /var/tmp/from_scwrl_782183192.pdb > /var/tmp/scwrl_782183192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_782183192.pdb Number of alignments=1778 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 44 :TLDPVSGYPYTTATNIGIEP 2q9kA 27 :THDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGP 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQSTYSLTCTDVAAWETTARLPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITPAD 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPRVY T0506 173 :DLSGAEELMAAAESEA 2q9kA 130 :KTYDEAAAMQLDQQIQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=14091 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_605665491.pdb -s /var/tmp/to_scwrl_605665491.seq -o /var/tmp/from_scwrl_605665491.pdb > /var/tmp/scwrl_605665491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_605665491.pdb Number of alignments=1779 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 42 :LATLDPVSGYPYTTATNIGIEP 2q9kA 25 :LITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=14093 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1726415298.pdb -s /var/tmp/to_scwrl_1726415298.seq -o /var/tmp/from_scwrl_1726415298.pdb > /var/tmp/scwrl_1726415298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1726415298.pdb Number of alignments=1780 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 101 :TLPRLTLVGRADRIGPDEVP 2q9kA 80 :STYSLTCTDVAAWETTARLP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTD 2q9kA 100 :LKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYD T0506 177 :AEELMAAAESEATR 2q9kA 134 :EAAAMQLDQQIQDI Number of specific fragments extracted= 5 number of extra gaps= 0 total=14098 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1686363630.pdb -s /var/tmp/to_scwrl_1686363630.seq -o /var/tmp/from_scwrl_1686363630.pdb > /var/tmp/scwrl_1686363630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686363630.pdb Number of alignments=1781 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDE 2q9kA 82 :YSLTCTDVAAWETTAR T0506 130 :YP 2q9kA 98 :LP T0506 140 :PDTRLYRLRTEGVQINGGPARNASNITPADLRTDL 2q9kA 100 :LKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDE T0506 178 :EELMAAAESEATR 2q9kA 135 :AAAMQLDQQIQDI Number of specific fragments extracted= 6 number of extra gaps= 0 total=14104 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_327959821.pdb -s /var/tmp/to_scwrl_327959821.seq -o /var/tmp/from_scwrl_327959821.pdb > /var/tmp/scwrl_327959821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327959821.pdb Number of alignments=1782 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 75 :TLHARNMETDARISVTLAPFG 2q9kA 59 :SLLVKTLADHPVFTLIFFADQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14105 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_437877913.pdb -s /var/tmp/to_scwrl_437877913.seq -o /var/tmp/from_scwrl_437877913.pdb > /var/tmp/scwrl_437877913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437877913.pdb Number of alignments=1783 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGK 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQS T0506 104 :RLTLVGR 2q9kA 81 :TYSLTCT T0506 111 :ADRIGPDE 2q9kA 89 :VAAWETTA T0506 134 :KLYL 2q9kA 97 :RLPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITP 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPR T0506 171 :RTDLSGAEELMAAAESEATRL 2q9kA 128 :VYKTYDEAAAMQLDQQIQDIL Number of specific fragments extracted= 7 number of extra gaps= 0 total=14112 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1961146647.pdb -s /var/tmp/to_scwrl_1961146647.seq -o /var/tmp/from_scwrl_1961146647.pdb > /var/tmp/scwrl_1961146647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1961146647.pdb Number of alignments=1784 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set Warning: unaligning (T0506)E17 because first residue in template chain is (2q9kA)K4 T0506 18 :PSAGAPFEAVRV 2q9kA 5 :VEHRLSEQQMKA T0506 38 :RTAALATLDPVSGYPYTTATNIGIEP 2q9kA 21 :PLVFLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 103 :PRLTLVGR 2q9kA 80 :STYSLTCT T0506 111 :ADRIGPDE 2q9kA 89 :VAAWETTA T0506 139 :LPDTRLYRLRTEGVQINGGPARNAS 2q9kA 99 :PLKVALYEGQIKEVRDILFYGAAVS T0506 176 :G 2q9kA 124 :D T0506 230 :L 2q9kA 125 :R T0506 234 :WFAERVETLK 2q9kA 126 :PRVYKTYDEA T0506 244 :QFEKALAQLL 2q9kA 139 :QLDQQIQDIL Number of specific fragments extracted= 10 number of extra gaps= 0 total=14122 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1134070016.pdb -s /var/tmp/to_scwrl_1134070016.seq -o /var/tmp/from_scwrl_1134070016.pdb > /var/tmp/scwrl_1134070016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1134070016.pdb Number of alignments=1785 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQST T0506 103 :PRLTLVGRADRIGPDE 2q9kA 82 :YSLTCTDVAAWETTAR T0506 137 :L 2q9kA 98 :L T0506 139 :LPDTRLYRLRTEGVQINGGPARNASNITPA 2q9kA 99 :PLKVALYEGQIKEVRDILFYGAAVSDRPRV T0506 172 :TDLSGAEELMAAAESEAT 2q9kA 129 :YKTYDEAAAMQLDQQIQD Number of specific fragments extracted= 6 number of extra gaps= 0 total=14128 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_214209147.pdb -s /var/tmp/to_scwrl_214209147.seq -o /var/tmp/from_scwrl_214209147.pdb > /var/tmp/scwrl_214209147.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_214209147.pdb Number of alignments=1786 # 2q9kA read from all-align.a2m # found chain 2q9kA in template set T0506 41 :ALATLDPVSGYPYTTATNIGIEP 2q9kA 24 :FLITHDQSKSWPITHAISWVYAK T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFG 2q9kA 48 :ETTIRFAIEADSLLVKTLADHPVFTLIFFADQ T0506 101 :TLPRLTLVGRADRIGPDEVPL 2q9kA 80 :STYSLTCTDVAAWETTARLPL T0506 141 :DTRLYRLRTEGVQINGGPARNASNITPA 2q9kA 101 :KVALYEGQIKEVRDILFYGAAVSDRPRV T0506 172 :TDLSGAEELMAAAESEAT 2q9kA 129 :YKTYDEAAAMQLDQQIQD Number of specific fragments extracted= 5 number of extra gaps= 0 total=14133 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1423092799.pdb -s /var/tmp/to_scwrl_1423092799.seq -o /var/tmp/from_scwrl_1423092799.pdb > /var/tmp/scwrl_1423092799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423092799.pdb Number of alignments=1787 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 1 :MLDVAPPVITPRGT 2qeaA 1 :MADLTHEFWDRLED T0506 37 :SRTAALAT 2qeaA 15 :VRSGMLGI T0506 49 :SGYPYTTATNIGIE 2qeaA 23 :KGQGRLIPMSPQTD T0506 63 :PDGTPFFFAAGLTLHARNMETDAR 2qeaA 39 :APGAIWFITAKGTDLAKGVAAGPQ T0506 87 :ISVTLA 2qeaA 64 :AQFVVS T0506 98 :DALTLPRLTLVGRADRIGPDE 2qeaA 70 :DDGEGLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKAKL 2qeaA 91 :ALDEFWSFVADAWF T0506 204 :LAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 2qeaA 105 :DGGQHDPDVCLLKFTPASGEISITEGGGARFLYEIAKAHLTDETPDMGEQA Number of specific fragments extracted= 8 number of extra gaps= 0 total=14141 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_137239894.pdb -s /var/tmp/to_scwrl_137239894.seq -o /var/tmp/from_scwrl_137239894.pdb > /var/tmp/scwrl_137239894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137239894.pdb Number of alignments=1788 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)L252 because last residue in template chain is (2qeaA)F159 T0506 1 :M 2qeaA 1 :M T0506 30 :ARDVLHTSRTAALAT 2qeaA 8 :FWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIE 2qeaA 23 :KGQGRLIPMSPQTD T0506 63 :PDGTPFFFAAGLTLHARNMETDAR 2qeaA 39 :APGAIWFITAKGTDLAKGVAAGPQ T0506 87 :ISVTLA 2qeaA 64 :AQFVVS T0506 98 :DALTLPRLTLVGRADRIGPDE 2qeaA 70 :DDGEGLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKAKL 2qeaA 91 :ALDEFWSFVADAWF T0506 210 :GRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKA 2qeaA 111 :PDVCLLKFTPASGEISITEGGGARFLYEIAKAHLTDETP T0506 249 :LAQ 2qeaA 156 :TVT Number of specific fragments extracted= 9 number of extra gaps= 0 total=14150 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1403349567.pdb -s /var/tmp/to_scwrl_1403349567.seq -o /var/tmp/from_scwrl_1403349567.pdb > /var/tmp/scwrl_1403349567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1403349567.pdb Number of alignments=1789 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 30 :ARDVLHTSRTAALAT 2qeaA 8 :FWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIE 2qeaA 23 :KGQGRLIPMSPQTD T0506 63 :PDGTPFFFAAGLTLHARNMETDAR 2qeaA 39 :APGAIWFITAKGTDLAKGVAAGPQ T0506 87 :ISVTLA 2qeaA 64 :AQFVVS T0506 98 :DALTLPRLTLVGRADRIGPDE 2qeaA 70 :DDGEGLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKA 2qeaA 91 :ALDEFWSFVADA T0506 134 :KLYLSLPDTRLYRLRTEGVQINGGP 2qeaA 105 :DGGQHDPDVCLLKFTPASGEISITE Number of specific fragments extracted= 7 number of extra gaps= 0 total=14157 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2014515874.pdb -s /var/tmp/to_scwrl_2014515874.seq -o /var/tmp/from_scwrl_2014515874.pdb > /var/tmp/scwrl_2014515874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2014515874.pdb Number of alignments=1790 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 30 :ARDVLHTSRTAALAT 2qeaA 8 :FWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIE 2qeaA 23 :KGQGRLIPMSPQTD T0506 63 :PDGTPFFFAAGLTLHARNMETDAR 2qeaA 39 :APGAIWFITAKGTDLAKGVAAGPQ T0506 87 :ISVTLA 2qeaA 64 :AQFVVS T0506 98 :DALTLPRLTLVGRADRIGPDE 2qeaA 70 :DDGEGLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKA 2qeaA 91 :ALDEFWSFVADA T0506 134 :KLYLSLPDTRLYRLRTEGVQING 2qeaA 105 :DGGQHDPDVCLLKFTPASGEISI T0506 157 :GPARNASNI 2qeaA 131 :GGARFLYEI Number of specific fragments extracted= 8 number of extra gaps= 0 total=14165 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1581718424.pdb -s /var/tmp/to_scwrl_1581718424.seq -o /var/tmp/from_scwrl_1581718424.pdb > /var/tmp/scwrl_1581718424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581718424.pdb Number of alignments=1791 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 1 :MLD 2qeaA 0 :GMA T0506 25 :EAVRVARDVLHTSRTAALATLDPVSGY 2qeaA 3 :DLTHEFWDRLEDVRSGMLGIKGQGRLI T0506 54 :TTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2qeaA 30 :PMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFV T0506 92 :APFGKGDALTLP 2qeaA 69 :SDDGEGLYADLD T0506 104 :RLTLVGRADRIGPDEVPLAIARY 2qeaA 82 :TLERSTDREALDEFWSFVADAWF T0506 204 :LAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 2qeaA 105 :DGGQHDPDVCLLKFTPASGEISITEGGGARFLYEIAKAHLTDETPDMGEQA Number of specific fragments extracted= 6 number of extra gaps= 0 total=14171 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1357731196.pdb -s /var/tmp/to_scwrl_1357731196.seq -o /var/tmp/from_scwrl_1357731196.pdb > /var/tmp/scwrl_1357731196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1357731196.pdb Number of alignments=1792 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 1 :MLD 2qeaA 0 :GMA T0506 25 :EAVRVARDVLHTSRTAALATLDPVS 2qeaA 3 :DLTHEFWDRLEDVRSGMLGIKGQGR T0506 51 :Y 2qeaA 28 :L T0506 54 :TTATNI 2qeaA 29 :IPMSPQ T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTL 2qeaA 36 :DDDAPGAIWFITAKGTDLAKGVAAGPQPAQFV T0506 92 :APFGKGDA 2qeaA 69 :SDDGEGLY T0506 105 :LTLVGRADRIGPDEVPLA 2qeaA 77 :ADLDGTLERSTDREALDE T0506 123 :IARY 2qeaA 101 :DAWF T0506 205 :AGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLL 2qeaA 106 :GGQHDPDVCLLKFTPASGEISITEGGGARFLYEIAKAHLTDETPDMGEQ T0506 254 :K 2qeaA 158 :T Number of specific fragments extracted= 10 number of extra gaps= 0 total=14181 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1403164874.pdb -s /var/tmp/to_scwrl_1403164874.seq -o /var/tmp/from_scwrl_1403164874.pdb > /var/tmp/scwrl_1403164874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1403164874.pdb Number of alignments=1793 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 25 :EAVRVARDVLHTSRTAALATLDPVSGY 2qeaA 3 :DLTHEFWDRLEDVRSGMLGIKGQGRLI T0506 54 :TTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTL 2qeaA 30 :PMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFV T0506 92 :APFGKGDALTL 2qeaA 69 :SDDGEGLYADL Number of specific fragments extracted= 3 number of extra gaps= 0 total=14184 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_819172997.pdb -s /var/tmp/to_scwrl_819172997.seq -o /var/tmp/from_scwrl_819172997.pdb > /var/tmp/scwrl_819172997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_819172997.pdb Number of alignments=1794 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 28 :RVARDVLHTSRTAALATLDPVS 2qeaA 6 :HEFWDRLEDVRSGMLGIKGQGR T0506 51 :Y 2qeaA 28 :L T0506 54 :TTATNI 2qeaA 29 :IPMSPQ T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTL 2qeaA 36 :DDDAPGAIWFITAKGTDLAKGVAAGPQPAQFV T0506 92 :APFGKGDALT 2qeaA 69 :SDDGEGLYAD Number of specific fragments extracted= 5 number of extra gaps= 0 total=14189 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_846891380.pdb -s /var/tmp/to_scwrl_846891380.seq -o /var/tmp/from_scwrl_846891380.pdb > /var/tmp/scwrl_846891380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_846891380.pdb Number of alignments=1795 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 124 :ARYIARYPKAKLYLSLPD 2qeaA 133 :ARFLYEIAKAHLTDETPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=14190 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=14190 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)E187 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPARNASNITPADLRT 2qeaA 130 :GGGARFLYEIAKAHLTD T0506 175 :SGAEELMAAAES 2qeaA 147 :ETPDMGEQATVT Number of specific fragments extracted= 10 number of extra gaps= 0 total=14200 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_323344141.pdb -s /var/tmp/to_scwrl_323344141.seq -o /var/tmp/from_scwrl_323344141.pdb > /var/tmp/scwrl_323344141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323344141.pdb Number of alignments=1796 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)E187 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPARNASNITPADLRT 2qeaA 130 :GGGARFLYEIAKAHLTD T0506 175 :SGAEELMAAAES 2qeaA 147 :ETPDMGEQATVT Number of specific fragments extracted= 10 number of extra gaps= 0 total=14210 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_574788317.pdb -s /var/tmp/to_scwrl_574788317.seq -o /var/tmp/from_scwrl_574788317.pdb > /var/tmp/scwrl_574788317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574788317.pdb Number of alignments=1797 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)L191 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPAR 2qeaA 129 :EGGGA T0506 161 :NASNITPADLRT 2qeaA 135 :FLYEIAKAHLTD T0506 175 :SGAEELMAAA 2qeaA 147 :ETPDMGEQAT T0506 189 :TR 2qeaA 157 :VT Number of specific fragments extracted= 12 number of extra gaps= 0 total=14222 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_755167273.pdb -s /var/tmp/to_scwrl_755167273.seq -o /var/tmp/from_scwrl_755167273.pdb > /var/tmp/scwrl_755167273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755167273.pdb Number of alignments=1798 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTE 2qeaA 107 :GQHDPDVCLLKFTPA T0506 151 :GVQINGGPAR 2qeaA 124 :EISITEGGGA T0506 197 :EASRLAV 2qeaA 134 :RFLYEIA T0506 204 :LAGAKTGRWKITS 2qeaA 146 :DETPDMGEQATVT Number of specific fragments extracted= 11 number of extra gaps= 0 total=14233 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_847475996.pdb -s /var/tmp/to_scwrl_847475996.seq -o /var/tmp/from_scwrl_847475996.pdb > /var/tmp/scwrl_847475996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847475996.pdb Number of alignments=1799 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALAT 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEPD 2qeaA 23 :KGQGRLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARY 2qeaA 90 :EALDEFWSFVADAW T0506 131 :PKA 2qeaA 105 :DGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2qeaA 108 :QHDPDVCLLKFTPASGEIS T0506 156 :GGPAR 2qeaA 129 :EGGGA T0506 197 :EASRLAV 2qeaA 134 :RFLYEIA T0506 204 :LAGA 2qeaA 144 :LTDE T0506 208 :KTGRWKITS 2qeaA 150 :DMGEQATVT Number of specific fragments extracted= 12 number of extra gaps= 0 total=14245 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2124859283.pdb -s /var/tmp/to_scwrl_2124859283.seq -o /var/tmp/from_scwrl_2124859283.pdb > /var/tmp/scwrl_2124859283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124859283.pdb Number of alignments=1800 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALAT 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEPD 2qeaA 23 :KGQGRLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPA 2qeaA 129 :EGGG T0506 196 :GEASRLAV 2qeaA 133 :ARFLYEIA T0506 204 :LAGAKTG 2qeaA 144 :LTDETPD T0506 211 :RWKITS 2qeaA 153 :EQATVT Number of specific fragments extracted= 11 number of extra gaps= 0 total=14256 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1506822521.pdb -s /var/tmp/to_scwrl_1506822521.seq -o /var/tmp/from_scwrl_1506822521.pdb > /var/tmp/scwrl_1506822521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1506822521.pdb Number of alignments=1801 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPAR 2qeaA 129 :EGGGA T0506 197 :EASRLAV 2qeaA 134 :RFLYEIA T0506 204 :LAGAKTGRWKITS 2qeaA 146 :DETPDMGEQATVT Number of specific fragments extracted= 11 number of extra gaps= 0 total=14267 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_175506266.pdb -s /var/tmp/to_scwrl_175506266.seq -o /var/tmp/from_scwrl_175506266.pdb > /var/tmp/scwrl_175506266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175506266.pdb Number of alignments=1802 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)L191 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIAR 2qeaA 90 :EALDEFWSF T0506 132 :KAKLYLSL 2qeaA 99 :VADAWFDG T0506 140 :PDTRLYRLRTEGVQIN 2qeaA 111 :PDVCLLKFTPASGEIS T0506 156 :GGPARN 2qeaA 129 :EGGGAR T0506 162 :ASNITPA 2qeaA 136 :LYEIAKA T0506 175 :SGAEELMAAAESEATR 2qeaA 143 :HLTDETPDMGEQATVT Number of specific fragments extracted= 12 number of extra gaps= 0 total=14279 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1603363160.pdb -s /var/tmp/to_scwrl_1603363160.seq -o /var/tmp/from_scwrl_1603363160.pdb > /var/tmp/scwrl_1603363160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603363160.pdb Number of alignments=1803 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 T0506 23 :PFEAVRVARDVLHTSRTAALATL 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIK T0506 48 :VSG 2qeaA 24 :GQG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQINGGPA 2qeaA 107 :GQHDPDVCLLKFTPASGEISITEG T0506 175 :SGAEELMAAAESEATR 2qeaA 131 :GGARFLYEIAKAHLTD Number of specific fragments extracted= 9 number of extra gaps= 0 total=14288 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_798373540.pdb -s /var/tmp/to_scwrl_798373540.seq -o /var/tmp/from_scwrl_798373540.pdb > /var/tmp/scwrl_798373540.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_798373540.pdb Number of alignments=1804 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)F235 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATL 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIK T0506 48 :VSG 2qeaA 24 :GQG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPL 2qeaA 90 :EALDE T0506 125 :RYIARYPKA 2qeaA 99 :VADAWFDGG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2qeaA 108 :QHDPDVCLLKFTPASGEISITEGG T0506 178 :EELMAAAESEATRL 2qeaA 132 :GARFLYEIAKAHLT T0506 228 :SDLARLW 2qeaA 152 :GEQATVT Number of specific fragments extracted= 11 number of extra gaps= 0 total=14299 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_171717701.pdb -s /var/tmp/to_scwrl_171717701.seq -o /var/tmp/from_scwrl_171717701.pdb > /var/tmp/scwrl_171717701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_171717701.pdb Number of alignments=1805 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATL 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIK T0506 50 :GYPYTTATNIGIEPD 2qeaA 24 :GQGRLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQINGGPAR 2qeaA 107 :GQHDPDVCLLKFTPASGEISITEGG T0506 195 :KGEASRLAV 2qeaA 132 :GARFLYEIA T0506 204 :LAGA 2qeaA 144 :LTDE T0506 208 :KTGRWKITS 2qeaA 150 :DMGEQATVT Number of specific fragments extracted= 10 number of extra gaps= 0 total=14309 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_350703317.pdb -s /var/tmp/to_scwrl_350703317.seq -o /var/tmp/from_scwrl_350703317.pdb > /var/tmp/scwrl_350703317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_350703317.pdb Number of alignments=1806 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQINGGPAR 2qeaA 107 :GQHDPDVCLLKFTPASGEISITEGG T0506 176 :G 2qeaA 132 :G T0506 196 :GEASRLAV 2qeaA 133 :ARFLYEIA T0506 204 :LAGAKTG 2qeaA 144 :LTDETPD T0506 211 :RWKITS 2qeaA 153 :EQATVT Number of specific fragments extracted= 12 number of extra gaps= 0 total=14321 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_981728404.pdb -s /var/tmp/to_scwrl_981728404.seq -o /var/tmp/from_scwrl_981728404.pdb > /var/tmp/scwrl_981728404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_981728404.pdb Number of alignments=1807 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPARN 2qeaA 129 :EGGGAR T0506 162 :ASNITPADL 2qeaA 136 :LYEIAKAHL Number of specific fragments extracted= 10 number of extra gaps= 0 total=14331 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1784020450.pdb -s /var/tmp/to_scwrl_1784020450.seq -o /var/tmp/from_scwrl_1784020450.pdb > /var/tmp/scwrl_1784020450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1784020450.pdb Number of alignments=1808 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQI 2qeaA 107 :GQHDPDVCLLKFTPASGEI Number of specific fragments extracted= 8 number of extra gaps= 0 total=14339 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1132886508.pdb -s /var/tmp/to_scwrl_1132886508.seq -o /var/tmp/from_scwrl_1132886508.pdb > /var/tmp/scwrl_1132886508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1132886508.pdb Number of alignments=1809 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2qeaA 2 :ADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPAR 2qeaA 129 :EGGGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=14348 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1587393894.pdb -s /var/tmp/to_scwrl_1587393894.seq -o /var/tmp/from_scwrl_1587393894.pdb > /var/tmp/scwrl_1587393894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1587393894.pdb Number of alignments=1810 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2qeaA 2 :ADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQI 2qeaA 107 :GQHDPDVCLLKFTPASGEI T0506 155 :NGGPAR 2qeaA 128 :TEGGGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=14357 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1362952101.pdb -s /var/tmp/to_scwrl_1362952101.seq -o /var/tmp/from_scwrl_1362952101.pdb > /var/tmp/scwrl_1362952101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1362952101.pdb Number of alignments=1811 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALAT 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEPD 2qeaA 23 :KGQGRLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARY 2qeaA 90 :EALDEFWSFVADAW T0506 131 :PKA 2qeaA 105 :DGG T0506 137 :LSLPDTRLYRLRTEGVQIN 2qeaA 108 :QHDPDVCLLKFTPASGEIS T0506 156 :GGPAR 2qeaA 129 :EGGGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=14366 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_671766492.pdb -s /var/tmp/to_scwrl_671766492.seq -o /var/tmp/from_scwrl_671766492.pdb > /var/tmp/scwrl_671766492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_671766492.pdb Number of alignments=1812 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 24 :FEAVRVARDVLHTSRTAALAT 2qeaA 2 :ADLTHEFWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEPD 2qeaA 23 :KGQGRLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPAR 2qeaA 129 :EGGGA T0506 186 :SEATR 2qeaA 134 :RFLYE Number of specific fragments extracted= 9 number of extra gaps= 0 total=14375 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1915353715.pdb -s /var/tmp/to_scwrl_1915353715.seq -o /var/tmp/from_scwrl_1915353715.pdb > /var/tmp/scwrl_1915353715.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915353715.pdb Number of alignments=1813 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 24 :FEAVRVARDVLHTSRTAALATLD 2qeaA 2 :ADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQIN 2qeaA 107 :GQHDPDVCLLKFTPASGEIS T0506 156 :GGPAR 2qeaA 129 :EGGGA T0506 186 :S 2qeaA 134 :R Number of specific fragments extracted= 10 number of extra gaps= 0 total=14385 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1800830014.pdb -s /var/tmp/to_scwrl_1800830014.seq -o /var/tmp/from_scwrl_1800830014.pdb > /var/tmp/scwrl_1800830014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800830014.pdb Number of alignments=1814 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIAR 2qeaA 90 :EALDEFWSF T0506 132 :KAKLYLSL 2qeaA 99 :VADAWFDG T0506 140 :PDTRLYRLRTEGVQIN 2qeaA 111 :PDVCLLKFTPASGEIS Number of specific fragments extracted= 9 number of extra gaps= 0 total=14394 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_485429492.pdb -s /var/tmp/to_scwrl_485429492.seq -o /var/tmp/from_scwrl_485429492.pdb > /var/tmp/scwrl_485429492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485429492.pdb Number of alignments=1815 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATL 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIK T0506 48 :VSG 2qeaA 24 :GQG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQINGGPA 2qeaA 107 :GQHDPDVCLLKFTPASGEISITEG T0506 175 :SGAEELMAAAES 2qeaA 131 :GGARFLYEIAKA Number of specific fragments extracted= 9 number of extra gaps= 0 total=14403 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_901940085.pdb -s /var/tmp/to_scwrl_901940085.seq -o /var/tmp/from_scwrl_901940085.pdb > /var/tmp/scwrl_901940085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901940085.pdb Number of alignments=1816 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATL 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIK T0506 48 :VSG 2qeaA 24 :GQG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPL 2qeaA 90 :EALDE T0506 125 :RYIARYPKA 2qeaA 99 :VADAWFDGG T0506 137 :LSLPDTRLYRLRTEGVQINGGPAR 2qeaA 108 :QHDPDVCLLKFTPASGEISITEGG T0506 178 :EELMAAAESEAT 2qeaA 132 :GARFLYEIAKAH Number of specific fragments extracted= 10 number of extra gaps= 0 total=14413 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2015039161.pdb -s /var/tmp/to_scwrl_2015039161.seq -o /var/tmp/from_scwrl_2015039161.pdb > /var/tmp/scwrl_2015039161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015039161.pdb Number of alignments=1817 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 24 :FEAVRVARDVLHTSRTAALATL 2qeaA 2 :ADLTHEFWDRLEDVRSGMLGIK T0506 50 :GYPYTTATNIGIEPD 2qeaA 24 :GQGRLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQINGGPAR 2qeaA 107 :GQHDPDVCLLKFTPASGEISITEGG T0506 176 :G 2qeaA 132 :G T0506 185 :ESEATRLN 2qeaA 133 :ARFLYEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=14422 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1908522291.pdb -s /var/tmp/to_scwrl_1908522291.seq -o /var/tmp/from_scwrl_1908522291.pdb > /var/tmp/scwrl_1908522291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908522291.pdb Number of alignments=1818 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SG 2qeaA 25 :QG T0506 53 :YTTATNIGIEPD 2qeaA 27 :RLIPMSPQTDDD T0506 65 :GTPFFFAAGLTLHARNMETDA 2qeaA 41 :GAIWFITAKGTDLAKGVAAGP T0506 86 :RISVTLAPFGKG 2qeaA 63 :PAQFVVSDDGEG T0506 103 :PRLTLVGRADRIGP 2qeaA 75 :LYADLDGTLERSTD T0506 117 :DEVPLAIARYIARYPKA 2qeaA 90 :EALDEFWSFVADAWFDG T0506 136 :YLSLPDTRLYRLRTEGVQINGGPAR 2qeaA 107 :GQHDPDVCLLKFTPASGEISITEGG T0506 176 :GAEELMAAA 2qeaA 132 :GARFLYEIA Number of specific fragments extracted= 9 number of extra gaps= 0 total=14431 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1039179979.pdb -s /var/tmp/to_scwrl_1039179979.seq -o /var/tmp/from_scwrl_1039179979.pdb > /var/tmp/scwrl_1039179979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039179979.pdb Number of alignments=1819 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2qeaA)G0 T0506 7 :PVITPRGTKIE 2qeaA 1 :MADLTHEFWDR T0506 34 :LHTSRTAALATLDPVSGYP 2qeaA 12 :LEDVRSGMLGIKGQGRLIP T0506 55 :TATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 31 :MSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKA 2qeaA 91 :ALDEFWSFVADA T0506 136 :YLS 2qeaA 103 :WFD T0506 139 :LPDTRLYRLRTEGV 2qeaA 110 :DPDVCLLKFTPASG T0506 160 :R 2qeaA 124 :E T0506 169 :DLRTDLSGAEELMAAAESEAT 2qeaA 125 :ISITEGGGARFLYEIAKAHLT T0506 241 :TLKQFEKALAQLLK 2qeaA 146 :DETPDMGEQATVTF Number of specific fragments extracted= 10 number of extra gaps= 0 total=14441 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1270905081.pdb -s /var/tmp/to_scwrl_1270905081.seq -o /var/tmp/from_scwrl_1270905081.pdb > /var/tmp/scwrl_1270905081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1270905081.pdb Number of alignments=1820 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)V203 because last residue in template chain is (2qeaA)F159 T0506 7 :PVITPRGTKIE 2qeaA 1 :MADLTHEFWDR T0506 34 :LHTSRTAALATLD 2qeaA 12 :LEDVRSGMLGIKG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 25 :QGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKA 2qeaA 91 :ALDEFWSFVADA T0506 136 :YLS 2qeaA 103 :WFD T0506 139 :LPDTRLYRLRTEGV 2qeaA 110 :DPDVCLLKFTPASG T0506 168 :ADLRTDLSGAEELMAAAESEATRLNAIKGEASRLA 2qeaA 124 :EISITEGGGARFLYEIAKAHLTDETPDMGEQATVT Number of specific fragments extracted= 8 number of extra gaps= 0 total=14449 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1775554518.pdb -s /var/tmp/to_scwrl_1775554518.seq -o /var/tmp/from_scwrl_1775554518.pdb > /var/tmp/scwrl_1775554518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775554518.pdb Number of alignments=1821 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)V203 because last residue in template chain is (2qeaA)F159 T0506 7 :PVITPRGTKIE 2qeaA 1 :MADLTHEFWDR T0506 34 :LHTSRTAALATLD 2qeaA 12 :LEDVRSGMLGIKG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 25 :QGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKA 2qeaA 91 :ALDEFWSFVADA T0506 136 :YLS 2qeaA 103 :WFD T0506 139 :LPDTRLYRLRTEG 2qeaA 110 :DPDVCLLKFTPAS T0506 152 :VQINGGPARNAS 2qeaA 125 :ISITEGGGARFL T0506 181 :MAAAESEATRLNAIKGEASRLA 2qeaA 137 :YEIAKAHLTDETPDMGEQATVT Number of specific fragments extracted= 9 number of extra gaps= 0 total=14458 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_473414756.pdb -s /var/tmp/to_scwrl_473414756.seq -o /var/tmp/from_scwrl_473414756.pdb > /var/tmp/scwrl_473414756.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473414756.pdb Number of alignments=1822 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)E25 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)F235 because last residue in template chain is (2qeaA)F159 T0506 26 :AVRVARDV 2qeaA 1 :MADLTHEF T0506 34 :LHTSRTAALATLD 2qeaA 12 :LEDVRSGMLGIKG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 25 :QGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 123 :IARYIARY 2qeaA 92 :LDEFWSFV T0506 133 :AKLYLS 2qeaA 100 :ADAWFD T0506 139 :LPDTRLYRLRTEG 2qeaA 110 :DPDVCLLKFTPAS T0506 152 :VQINGGPA 2qeaA 125 :ISITEGGG T0506 177 :AEELMAAAESEAT 2qeaA 133 :ARFLYEIAKAHLT T0506 208 :K 2qeaA 146 :D T0506 209 :TGRWKIT 2qeaA 151 :MGEQATV T0506 234 :W 2qeaA 158 :T Number of specific fragments extracted= 12 number of extra gaps= 0 total=14470 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_481152631.pdb -s /var/tmp/to_scwrl_481152631.seq -o /var/tmp/from_scwrl_481152631.pdb > /var/tmp/scwrl_481152631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_481152631.pdb Number of alignments=1823 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALAT 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEP 2qeaA 23 :KGQGRLIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYIA 2qeaA 96 :WSFVADAWFD T0506 135 :LYLSLPDTRLYRLRTEG 2qeaA 106 :GGQHDPDVCLLKFTPAS T0506 152 :VQINGGPARNAS 2qeaA 125 :ISITEGGGARFL T0506 181 :MAAAESEA 2qeaA 137 :YEIAKAHL T0506 207 :AK 2qeaA 145 :TD T0506 209 :TGRWKITS 2qeaA 151 :MGEQATVT Number of specific fragments extracted= 10 number of extra gaps= 0 total=14480 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1031235746.pdb -s /var/tmp/to_scwrl_1031235746.seq -o /var/tmp/from_scwrl_1031235746.pdb > /var/tmp/scwrl_1031235746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031235746.pdb Number of alignments=1824 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)I217 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SGY 2qeaA 25 :QGR T0506 54 :TTATNIGIEP 2qeaA 28 :LIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYIA 2qeaA 96 :WSFVADAWFD T0506 135 :LYLSLPDTRLYRLRTEG 2qeaA 106 :GGQHDPDVCLLKFTPAS T0506 152 :VQINGGPA 2qeaA 125 :ISITEGGG T0506 177 :AEELMAAAESEATRLN 2qeaA 133 :ARFLYEIAKAHLTDET T0506 207 :AKTGRWKITS 2qeaA 149 :PDMGEQATVT Number of specific fragments extracted= 10 number of extra gaps= 0 total=14490 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1292587753.pdb -s /var/tmp/to_scwrl_1292587753.seq -o /var/tmp/from_scwrl_1292587753.pdb > /var/tmp/scwrl_1292587753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1292587753.pdb Number of alignments=1825 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)F235 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 25 :QGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKA 2qeaA 91 :ALDEFWSFVADA T0506 136 :YLS 2qeaA 103 :WFD T0506 139 :LPDTRLYRLRTEGVQIN 2qeaA 110 :DPDVCLLKFTPASGEIS T0506 163 :S 2qeaA 127 :I T0506 172 :TDLSGAEELMAAAESEATRLNAIK 2qeaA 128 :TEGGGARFLYEIAKAHLTDETPDM T0506 210 :GRWKIT 2qeaA 152 :GEQATV T0506 234 :W 2qeaA 158 :T Number of specific fragments extracted= 10 number of extra gaps= 0 total=14500 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1328044011.pdb -s /var/tmp/to_scwrl_1328044011.seq -o /var/tmp/from_scwrl_1328044011.pdb > /var/tmp/scwrl_1328044011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328044011.pdb Number of alignments=1826 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)P6 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)T241 because last residue in template chain is (2qeaA)F159 T0506 7 :PVITPRGTKIE 2qeaA 1 :MADLTHEFWDR T0506 34 :LHTSRTAALATLDPVSGYPY 2qeaA 12 :LEDVRSGMLGIKGQGRLIPM T0506 56 :ATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 32 :SPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 122 :AIARYIAR 2qeaA 91 :ALDEFWSF T0506 132 :KAKLYLS 2qeaA 99 :VADAWFD T0506 139 :LPDTRLYRLRTEG 2qeaA 110 :DPDVCLLKFTPAS T0506 152 :VQINGGPARNASNITPADLRT 2qeaA 125 :ISITEGGGARFLYEIAKAHLT T0506 178 :EELMAAAESE 2qeaA 146 :DETPDMGEQA T0506 238 :RVE 2qeaA 156 :TVT Number of specific fragments extracted= 10 number of extra gaps= 0 total=14510 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1354579887.pdb -s /var/tmp/to_scwrl_1354579887.seq -o /var/tmp/from_scwrl_1354579887.pdb > /var/tmp/scwrl_1354579887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1354579887.pdb Number of alignments=1827 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)E237 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALAT 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEP 2qeaA 23 :KGQGRLIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLA 2qeaA 96 :WSFV T0506 133 :AKLYLS 2qeaA 100 :ADAWFD T0506 139 :LPDTRLYRLRTEGVQIN 2qeaA 110 :DPDVCLLKFTPASGEIS T0506 171 :RTDLSGAEELMAAAESEATRL 2qeaA 127 :ITEGGGARFLYEIAKAHLTDE T0506 226 :SASDLARLWFA 2qeaA 148 :TPDMGEQATVT Number of specific fragments extracted= 9 number of extra gaps= 0 total=14519 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1867376070.pdb -s /var/tmp/to_scwrl_1867376070.seq -o /var/tmp/from_scwrl_1867376070.pdb > /var/tmp/scwrl_1867376070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867376070.pdb Number of alignments=1828 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)E237 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAAL 2qeaA 1 :MADLTHEFWDRLEDVRSGML T0506 49 :SGYPYTTATNIGIEPDGT 2qeaA 23 :KGQGRLIPMSPQTDDDAP T0506 67 :PFFFAAGL 2qeaA 42 :AIWFITAK T0506 75 :TLHARNMETDARISVTLAPFGKG 2qeaA 51 :TDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPD 2qeaA 74 :GLYADLDGTLERSTDR T0506 118 :EVPL 2qeaA 91 :ALDE T0506 130 :YPKAKLYLS 2qeaA 97 :SFVADAWFD T0506 139 :LPDTRLYRLRTEGVQINGGPAR 2qeaA 110 :DPDVCLLKFTPASGEISITEGG T0506 176 :G 2qeaA 132 :G T0506 178 :EELMAAAESEATRLN 2qeaA 133 :ARFLYEIAKAHLTDE T0506 226 :SASDLARLWFA 2qeaA 148 :TPDMGEQATVT Number of specific fragments extracted= 11 number of extra gaps= 0 total=14530 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2083211284.pdb -s /var/tmp/to_scwrl_2083211284.seq -o /var/tmp/from_scwrl_2083211284.pdb > /var/tmp/scwrl_2083211284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083211284.pdb Number of alignments=1829 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)F235 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALAT 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEP 2qeaA 23 :KGQGRLIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYIA 2qeaA 96 :WSFVADAWFD T0506 135 :LYLSLPDTRLYRLRTEGVQING 2qeaA 106 :GGQHDPDVCLLKFTPASGEISI T0506 172 :TDLSGAEELMAAAESEATRLNAIK 2qeaA 128 :TEGGGARFLYEIAKAHLTDETPDM T0506 228 :SDLARLW 2qeaA 152 :GEQATVT Number of specific fragments extracted= 8 number of extra gaps= 0 total=14538 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_54572236.pdb -s /var/tmp/to_scwrl_54572236.seq -o /var/tmp/from_scwrl_54572236.pdb > /var/tmp/scwrl_54572236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54572236.pdb Number of alignments=1830 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2qeaA)G0 Warning: unaligning (T0506)F235 because last residue in template chain is (2qeaA)F159 T0506 23 :PFEAVRVARDVLHTSRTAALATLD 2qeaA 1 :MADLTHEFWDRLEDVRSGMLGIKG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 25 :QGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYI 2qeaA 96 :WSFVADAWF T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2qeaA 105 :DGGQHDPDVCLLKFTPASGEIS T0506 163 :S 2qeaA 127 :I T0506 172 :TDLSGAEELMAAAESEATRLNAIK 2qeaA 128 :TEGGGARFLYEIAKAHLTDETPDM T0506 210 :GRWKITS 2qeaA 152 :GEQATVT Number of specific fragments extracted= 8 number of extra gaps= 0 total=14546 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1844751707.pdb -s /var/tmp/to_scwrl_1844751707.seq -o /var/tmp/from_scwrl_1844751707.pdb > /var/tmp/scwrl_1844751707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844751707.pdb Number of alignments=1831 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 37 :DDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 122 :AIARYIARYPK 2qeaA 91 :ALDEFWSFVAD T0506 135 :LYLS 2qeaA 102 :AWFD T0506 139 :LPDTRLYRLR 2qeaA 110 :DPDVCLLKFT Number of specific fragments extracted= 5 number of extra gaps= 0 total=14551 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1442550158.pdb -s /var/tmp/to_scwrl_1442550158.seq -o /var/tmp/from_scwrl_1442550158.pdb > /var/tmp/scwrl_1442550158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1442550158.pdb Number of alignments=1832 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 82 :ETDARISVT 2qeaA 108 :QHDPDVCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=14552 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 204 :LAGAK 2qeaA 56 :GVAAG T0506 209 :TGRWKITSIDPDGIDLASASDLARLWFA 2qeaA 62 :QPAQFVVSDDGEGLYADLDGTLERSTDR Number of specific fragments extracted= 2 number of extra gaps= 0 total=14554 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_230078502.pdb -s /var/tmp/to_scwrl_230078502.seq -o /var/tmp/from_scwrl_230078502.pdb > /var/tmp/scwrl_230078502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_230078502.pdb Number of alignments=1833 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 89 :VTLAPFGKG 2qeaA 66 :FVVSDDGEG T0506 103 :PRLTLVGRADRIGPDE 2qeaA 75 :LYADLDGTLERSTDRE T0506 123 :IARYIARY 2qeaA 92 :LDEFWSFV T0506 133 :AKLYLS 2qeaA 100 :ADAWFD T0506 139 :LPDTRLYRLRTEG 2qeaA 110 :DPDVCLLKFTPAS T0506 152 :VQINGGPA 2qeaA 125 :ISITEGGG T0506 177 :AEELMAAAE 2qeaA 133 :ARFLYEIAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=14561 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1300631220.pdb -s /var/tmp/to_scwrl_1300631220.seq -o /var/tmp/from_scwrl_1300631220.pdb > /var/tmp/scwrl_1300631220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300631220.pdb Number of alignments=1834 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 35 :HTSRTAALAT 2qeaA 13 :EDVRSGMLGI T0506 49 :SGYPYTTATNIGIEP 2qeaA 23 :KGQGRLIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYIA 2qeaA 96 :WSFVADAWFD T0506 135 :LYLSLPDTRLYRLRTEG 2qeaA 106 :GGQHDPDVCLLKFTPAS T0506 152 :VQINGGPAR 2qeaA 125 :ISITEGGGA Number of specific fragments extracted= 7 number of extra gaps= 0 total=14568 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_93440051.pdb -s /var/tmp/to_scwrl_93440051.seq -o /var/tmp/from_scwrl_93440051.pdb > /var/tmp/scwrl_93440051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93440051.pdb Number of alignments=1835 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 38 :RTAALAT 2qeaA 16 :RSGMLGI T0506 49 :SGYPYTTATNIGIEP 2qeaA 23 :KGQGRLIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYIA 2qeaA 96 :WSFVADAWFD T0506 135 :LYLSLPDTRLYRLRTEG 2qeaA 106 :GGQHDPDVCLLKFTPAS T0506 152 :VQINGGPA 2qeaA 125 :ISITEGGG T0506 177 :AEELMAAAESEAT 2qeaA 133 :ARFLYEIAKAHLT Number of specific fragments extracted= 8 number of extra gaps= 0 total=14576 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_401796203.pdb -s /var/tmp/to_scwrl_401796203.seq -o /var/tmp/from_scwrl_401796203.pdb > /var/tmp/scwrl_401796203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_401796203.pdb Number of alignments=1836 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 38 :RTAALATLD 2qeaA 16 :RSGMLGIKG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 25 :QGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 122 :AIARYIARYPKA 2qeaA 91 :ALDEFWSFVADA T0506 136 :YLS 2qeaA 103 :WFD T0506 139 :LPDTRLYRLRTEGVQIN 2qeaA 110 :DPDVCLLKFTPASGEIS T0506 163 :S 2qeaA 127 :I T0506 172 :TDLSGAEELMAAAESEAT 2qeaA 128 :TEGGGARFLYEIAKAHLT Number of specific fragments extracted= 8 number of extra gaps= 0 total=14584 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1651334537.pdb -s /var/tmp/to_scwrl_1651334537.seq -o /var/tmp/from_scwrl_1651334537.pdb > /var/tmp/scwrl_1651334537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1651334537.pdb Number of alignments=1837 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 101 :TLPRLTLVGRADRIGPDE 2qeaA 73 :EGLYADLDGTLERSTDRE T0506 122 :AIARY 2qeaA 91 :ALDEF Number of specific fragments extracted= 2 number of extra gaps= 0 total=14586 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1075168454.pdb -s /var/tmp/to_scwrl_1075168454.seq -o /var/tmp/from_scwrl_1075168454.pdb > /var/tmp/scwrl_1075168454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075168454.pdb Number of alignments=1838 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 34 :LHTSRTAALAT 2qeaA 12 :LEDVRSGMLGI T0506 49 :SGYPYTTATNIGIEP 2qeaA 23 :KGQGRLIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLA 2qeaA 96 :WSFV T0506 133 :AKLYLS 2qeaA 100 :ADAWFD T0506 139 :LPDTRLYRLRTEGVQIN 2qeaA 110 :DPDVCLLKFTPASGEIS T0506 171 :RTDLSGAEELMAAAESEA 2qeaA 127 :ITEGGGARFLYEIAKAHL Number of specific fragments extracted= 8 number of extra gaps= 0 total=14594 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_38333006.pdb -s /var/tmp/to_scwrl_38333006.seq -o /var/tmp/from_scwrl_38333006.pdb > /var/tmp/scwrl_38333006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_38333006.pdb Number of alignments=1839 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 24 :FEAVRVARDVLHTSRTAAL 2qeaA 2 :ADLTHEFWDRLEDVRSGML T0506 49 :SGYPYTTATNIGIEPDGT 2qeaA 23 :KGQGRLIPMSPQTDDDAP T0506 67 :PFFFAAGL 2qeaA 42 :AIWFITAK T0506 75 :TLHARNMETDARISVTLAPFGKG 2qeaA 51 :TDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPD 2qeaA 74 :GLYADLDGTLERSTDR T0506 118 :EVPL 2qeaA 91 :ALDE T0506 130 :YPKAKLYLS 2qeaA 97 :SFVADAWFD T0506 139 :LPDTRLYRLRTEGVQINGGPAR 2qeaA 110 :DPDVCLLKFTPASGEISITEGG T0506 176 :G 2qeaA 132 :G T0506 178 :EELMAAAESEAT 2qeaA 133 :ARFLYEIAKAHL Number of specific fragments extracted= 10 number of extra gaps= 0 total=14604 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_636737399.pdb -s /var/tmp/to_scwrl_636737399.seq -o /var/tmp/from_scwrl_636737399.pdb > /var/tmp/scwrl_636737399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636737399.pdb Number of alignments=1840 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 49 :SGYPYTTATNIGIEP 2qeaA 23 :KGQGRLIPMSPQTDD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 40 :PGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYIA 2qeaA 96 :WSFVADAWFD T0506 135 :LYLSLPDTRLYRLRTEGVQING 2qeaA 106 :GGQHDPDVCLLKFTPASGEISI T0506 172 :TDLSGAEELMAAAESEATR 2qeaA 128 :TEGGGARFLYEIAKAHLTD Number of specific fragments extracted= 6 number of extra gaps= 0 total=14610 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_515078702.pdb -s /var/tmp/to_scwrl_515078702.seq -o /var/tmp/from_scwrl_515078702.pdb > /var/tmp/scwrl_515078702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_515078702.pdb Number of alignments=1841 # 2qeaA read from all-align.a2m # found chain 2qeaA in template set T0506 39 :TAALATLD 2qeaA 17 :SGMLGIKG T0506 49 :SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2qeaA 25 :QGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGE T0506 102 :LPRLTLVGRADRIGPDE 2qeaA 74 :GLYADLDGTLERSTDRE T0506 119 :VPLAIARYI 2qeaA 96 :WSFVADAWF T0506 134 :KLYLSLPDTRLYRLRTEGVQIN 2qeaA 105 :DGGQHDPDVCLLKFTPASGEIS T0506 163 :S 2qeaA 127 :I T0506 172 :TDLSGAEELMAAAESEAT 2qeaA 128 :TEGGGARFLYEIAKAHLT Number of specific fragments extracted= 7 number of extra gaps= 0 total=14617 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1401285107.pdb -s /var/tmp/to_scwrl_1401285107.seq -o /var/tmp/from_scwrl_1401285107.pdb > /var/tmp/scwrl_1401285107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1401285107.pdb Number of alignments=1842 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)I9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)F245 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)E246 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 6 :PP 2re7A 3 :NQ T0506 11 :PR 2re7A 8 :DK T0506 30 :ARDVLHTSRTAALATLD 2re7A 10 :IQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDG 2re7A 41 :VNLDN T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2re7A 47 :EIWFIGDKTSDVVKDIQDDARIGLTYA T0506 98 :DALTLPRLTLVGRADR 2re7A 74 :TQDEKNYVSISGDAEL T0506 115 :GPDEVPLAIARYIARYPKA 2re7A 92 :DKAKLDELWSPVYSAFFAN T0506 224 :LASASDLARLWFAERVETLKQ 2re7A 111 :GKEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 9 number of extra gaps= 3 total=14626 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1308503890.pdb -s /var/tmp/to_scwrl_1308503890.seq -o /var/tmp/from_scwrl_1308503890.pdb > /var/tmp/scwrl_1308503890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1308503890.pdb Number of alignments=1843 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)I9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)T10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)F245 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)E246 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 6 :PP 2re7A 3 :NQ T0506 11 :PR 2re7A 8 :DK T0506 30 :ARDVLHTSRTAALATLD 2re7A 10 :IQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDG 2re7A 41 :VNLDN T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2re7A 47 :EIWFIGDKTSDVVKDIQDDARIGLTYA T0506 98 :DALTLPRLTLVGRADR 2re7A 74 :TQDEKNYVSISGDAEL T0506 116 :PDEV 2re7A 92 :DKAK T0506 120 :PLAIARYIARYPKA 2re7A 97 :DELWSPVYSAFFAN T0506 236 :AERVETLKQ 2re7A 123 :VPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14636 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_282948770.pdb -s /var/tmp/to_scwrl_282948770.seq -o /var/tmp/from_scwrl_282948770.pdb > /var/tmp/scwrl_282948770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_282948770.pdb Number of alignments=1844 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 T0506 30 :ARDVLHTSRTAALATLD 2re7A 10 :IQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDG 2re7A 41 :VNLDN T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2re7A 47 :EIWFIGDKTSDVVKDIQDDARIGLTYA T0506 98 :DALTLPRLTLVGRADR 2re7A 74 :TQDEKNYVSISGDAEL T0506 115 :GPDEVPLAIARYIARYPKA 2re7A 92 :DKAKLDELWSPVYSAFFAN T0506 136 :YLSLPDTRLYRLRTEGVQI 2re7A 111 :GKEDANIQLIKVVPHGVEC Number of specific fragments extracted= 7 number of extra gaps= 1 total=14643 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1054631475.pdb -s /var/tmp/to_scwrl_1054631475.seq -o /var/tmp/from_scwrl_1054631475.pdb > /var/tmp/scwrl_1054631475.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1054631475.pdb Number of alignments=1845 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 31 :RDVLHTSRTAALATLD 2re7A 11 :QAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDG 2re7A 41 :VNLDN T0506 66 :TPFFFAAGLTLHARNMETDARISVTLA 2re7A 47 :EIWFIGDKTSDVVKDIQDDARIGLTYA T0506 98 :DALTLPRLTLVGRADR 2re7A 74 :TQDEKNYVSISGDAEL T0506 116 :PDEV 2re7A 92 :DKAK T0506 120 :PLAIARYIARYPKA 2re7A 97 :DELWSPVYSAFFAN T0506 136 :YLSLPDTRLYRLRTEGVQI 2re7A 111 :GKEDANIQLIKVVPHGVEC Number of specific fragments extracted= 8 number of extra gaps= 1 total=14651 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1793933382.pdb -s /var/tmp/to_scwrl_1793933382.seq -o /var/tmp/from_scwrl_1793933382.pdb > /var/tmp/scwrl_1793933382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793933382.pdb Number of alignments=1846 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)V108 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G109 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDPVSGYPYTTATNI 2re7A 8 :DKIQAVIKDVKFAMISTSNKKGDIHAWPMTTS T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLP 2re7A 41 :VNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEKNYVSIS T0506 104 :RLTL 2re7A 86 :DAEL T0506 110 :RADRIGPDEVPLAIARY 2re7A 92 :DKAKLDELWSPVYSAFF T0506 134 :KLYLSLPDTRLYRLRTEGVQING 2re7A 109 :ANGKEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 6 number of extra gaps= 3 total=14657 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1184888855.pdb -s /var/tmp/to_scwrl_1184888855.seq -o /var/tmp/from_scwrl_1184888855.pdb > /var/tmp/scwrl_1184888855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184888855.pdb Number of alignments=1847 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 28 :RVARDVLHTSRTAALATLDPVSG 2re7A 8 :DKIQAVIKDVKFAMISTSNKKGD T0506 51 :YPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 2re7A 32 :HAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQD T0506 101 :TLPRLTLVGRADR 2re7A 77 :EKNYVSISGDAEL T0506 116 :PDEVPLAI 2re7A 92 :DKAKLDEL T0506 127 :IA 2re7A 100 :WS T0506 131 :PKAKLYL 2re7A 102 :PVYSAFF T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 7 number of extra gaps= 3 total=14664 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_922186990.pdb -s /var/tmp/to_scwrl_922186990.seq -o /var/tmp/from_scwrl_922186990.pdb > /var/tmp/scwrl_922186990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_922186990.pdb Number of alignments=1848 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 T0506 28 :RVARDVLHTSRTAALATLDPVSGYPYTTATNI 2re7A 8 :DKIQAVIKDVKFAMISTSNKKGDIHAWPMTTS T0506 60 :GIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTL 2re7A 41 :VNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEKNYVSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=14666 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1554972027.pdb -s /var/tmp/to_scwrl_1554972027.seq -o /var/tmp/from_scwrl_1554972027.pdb > /var/tmp/scwrl_1554972027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554972027.pdb Number of alignments=1849 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 T0506 28 :RVARDVLHTSRTAALATLDPVSG 2re7A 8 :DKIQAVIKDVKFAMISTSNKKGD T0506 51 :YPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL 2re7A 32 :HAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEKNYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=14668 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_76585187.pdb -s /var/tmp/to_scwrl_76585187.seq -o /var/tmp/from_scwrl_76585187.pdb > /var/tmp/scwrl_76585187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_76585187.pdb Number of alignments=1850 # 2re7A read from all-align.a2m # found chain 2re7A in template set T0506 68 :FFFAAGLTLHARNMETDARISVTLA 2re7A 49 :WFIGDKTSDVVKDIQDDARIGLTYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=14669 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_45608424.pdb -s /var/tmp/to_scwrl_45608424.seq -o /var/tmp/from_scwrl_45608424.pdb > /var/tmp/scwrl_45608424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_45608424.pdb Number of alignments=1851 # 2re7A read from all-align.a2m # found chain 2re7A in template set T0506 49 :SGYPYTTA 2re7A 32 :HAWPMTTS T0506 60 :GIEPDGTPFFFAAGLT 2re7A 40 :EVNLDNKEIWFIGDKT T0506 76 :LHARNMETDARISVTLAPFGKGD 2re7A 57 :DVVKDIQDDARIGLTYATQDEKN Number of specific fragments extracted= 3 number of extra gaps= 0 total=14672 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1183042898.pdb -s /var/tmp/to_scwrl_1183042898.seq -o /var/tmp/from_scwrl_1183042898.pdb > /var/tmp/scwrl_1183042898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1183042898.pdb Number of alignments=1852 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)R160 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14682 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_549999944.pdb -s /var/tmp/to_scwrl_549999944.seq -o /var/tmp/from_scwrl_549999944.pdb > /var/tmp/scwrl_549999944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_549999944.pdb Number of alignments=1853 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14692 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_526761056.pdb -s /var/tmp/to_scwrl_526761056.seq -o /var/tmp/from_scwrl_526761056.pdb > /var/tmp/scwrl_526761056.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_526761056.pdb Number of alignments=1854 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKA 2re7A 109 :ANG T0506 137 :LSLPDTRLYRLRTEGVQING 2re7A 112 :KEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14702 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_66794998.pdb -s /var/tmp/to_scwrl_66794998.seq -o /var/tmp/from_scwrl_66794998.pdb > /var/tmp/scwrl_66794998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66794998.pdb Number of alignments=1855 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 42 :NLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKA 2re7A 109 :ANG T0506 137 :LSLPDTRLYRLRTEGVQING 2re7A 112 :KEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 9 number of extra gaps= 3 total=14711 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1842587697.pdb -s /var/tmp/to_scwrl_1842587697.seq -o /var/tmp/from_scwrl_1842587697.pdb > /var/tmp/scwrl_1842587697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842587697.pdb Number of alignments=1856 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 3 :D 2re7A 3 :N T0506 24 :F 2re7A 4 :Q T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 11 number of extra gaps= 3 total=14722 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1854805067.pdb -s /var/tmp/to_scwrl_1854805067.seq -o /var/tmp/from_scwrl_1854805067.pdb > /var/tmp/scwrl_1854805067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1854805067.pdb Number of alignments=1857 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAI 2re7A 94 :AKLDELW T0506 124 :ARYIARYPKAK 2re7A 102 :PVYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14732 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1421374885.pdb -s /var/tmp/to_scwrl_1421374885.seq -o /var/tmp/from_scwrl_1421374885.pdb > /var/tmp/scwrl_1421374885.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1421374885.pdb Number of alignments=1858 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14742 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1562480120.pdb -s /var/tmp/to_scwrl_1562480120.seq -o /var/tmp/from_scwrl_1562480120.pdb > /var/tmp/scwrl_1562480120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562480120.pdb Number of alignments=1859 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIA 2re7A 94 :AKLDELWS T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14752 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1790532704.pdb -s /var/tmp/to_scwrl_1790532704.seq -o /var/tmp/from_scwrl_1790532704.pdb > /var/tmp/scwrl_1790532704.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790532704.pdb Number of alignments=1860 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A159 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)R160 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 3 :D 2re7A 3 :N T0506 24 :F 2re7A 4 :Q T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAI 2re7A 94 :AKLDELW T0506 124 :ARYIARYPKAK 2re7A 102 :PVYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 11 number of extra gaps= 3 total=14763 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1475947121.pdb -s /var/tmp/to_scwrl_1475947121.seq -o /var/tmp/from_scwrl_1475947121.pdb > /var/tmp/scwrl_1475947121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475947121.pdb Number of alignments=1861 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 3 :D 2re7A 3 :N T0506 24 :F 2re7A 4 :Q T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IE 2re7A 41 :VN T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 44 :DNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIA 2re7A 94 :AKLDELWS T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 11 number of extra gaps= 3 total=14774 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1259748180.pdb -s /var/tmp/to_scwrl_1259748180.seq -o /var/tmp/from_scwrl_1259748180.pdb > /var/tmp/scwrl_1259748180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259748180.pdb Number of alignments=1862 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAI 2re7A 94 :AKLDELW T0506 124 :ARYIARYPKAK 2re7A 102 :PVYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14784 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1085599215.pdb -s /var/tmp/to_scwrl_1085599215.seq -o /var/tmp/from_scwrl_1085599215.pdb > /var/tmp/scwrl_1085599215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1085599215.pdb Number of alignments=1863 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)P158 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQING 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14794 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1706025623.pdb -s /var/tmp/to_scwrl_1706025623.seq -o /var/tmp/from_scwrl_1706025623.pdb > /var/tmp/scwrl_1706025623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706025623.pdb Number of alignments=1864 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14803 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_412895754.pdb -s /var/tmp/to_scwrl_412895754.seq -o /var/tmp/from_scwrl_412895754.pdb > /var/tmp/scwrl_412895754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_412895754.pdb Number of alignments=1865 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14812 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1179039266.pdb -s /var/tmp/to_scwrl_1179039266.seq -o /var/tmp/from_scwrl_1179039266.pdb > /var/tmp/scwrl_1179039266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1179039266.pdb Number of alignments=1866 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKA 2re7A 109 :ANG T0506 137 :LSLPDTRLYRLRTEGVQIN 2re7A 112 :KEDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14821 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2107821826.pdb -s /var/tmp/to_scwrl_2107821826.seq -o /var/tmp/from_scwrl_2107821826.pdb > /var/tmp/scwrl_2107821826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107821826.pdb Number of alignments=1867 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 42 :NLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKA 2re7A 109 :ANG T0506 137 :LSLPDTRLYRLRTEGVQIN 2re7A 112 :KEDANIQLIKVVPHGVECW Number of specific fragments extracted= 8 number of extra gaps= 2 total=14829 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2064230291.pdb -s /var/tmp/to_scwrl_2064230291.seq -o /var/tmp/from_scwrl_2064230291.pdb > /var/tmp/scwrl_2064230291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064230291.pdb Number of alignments=1868 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14838 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_106724075.pdb -s /var/tmp/to_scwrl_106724075.seq -o /var/tmp/from_scwrl_106724075.pdb > /var/tmp/scwrl_106724075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_106724075.pdb Number of alignments=1869 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAI 2re7A 94 :AKLDELW T0506 124 :ARYIARYPKAK 2re7A 102 :PVYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14847 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2146154832.pdb -s /var/tmp/to_scwrl_2146154832.seq -o /var/tmp/from_scwrl_2146154832.pdb > /var/tmp/scwrl_2146154832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2146154832.pdb Number of alignments=1870 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14856 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_553484043.pdb -s /var/tmp/to_scwrl_553484043.seq -o /var/tmp/from_scwrl_553484043.pdb > /var/tmp/scwrl_553484043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_553484043.pdb Number of alignments=1871 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIA 2re7A 94 :AKLDELWS T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14865 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_621802777.pdb -s /var/tmp/to_scwrl_621802777.seq -o /var/tmp/from_scwrl_621802777.pdb > /var/tmp/scwrl_621802777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_621802777.pdb Number of alignments=1872 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAI 2re7A 94 :AKLDELW T0506 124 :ARYIARYPKAK 2re7A 102 :PVYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14874 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1399956292.pdb -s /var/tmp/to_scwrl_1399956292.seq -o /var/tmp/from_scwrl_1399956292.pdb > /var/tmp/scwrl_1399956292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399956292.pdb Number of alignments=1873 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IE 2re7A 41 :VN T0506 63 :PDGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 44 :DNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIA 2re7A 94 :AKLDELWS T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14883 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1861987933.pdb -s /var/tmp/to_scwrl_1861987933.seq -o /var/tmp/from_scwrl_1861987933.pdb > /var/tmp/scwrl_1861987933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861987933.pdb Number of alignments=1874 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAI 2re7A 94 :AKLDELW T0506 124 :ARYIARYPKAK 2re7A 102 :PVYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14892 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_904751548.pdb -s /var/tmp/to_scwrl_904751548.seq -o /var/tmp/from_scwrl_904751548.pdb > /var/tmp/scwrl_904751548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_904751548.pdb Number of alignments=1875 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 48 :VSGYPYTTATNIG 2re7A 27 :KKGDIHAWPMTTS T0506 61 :IEPDGT 2re7A 41 :VNLDNK T0506 67 :PFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 48 :IWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :P 2re7A 92 :D T0506 117 :DEVPLAIARYIARY 2re7A 94 :AKLDELWSPVYSAF T0506 131 :PKAK 2re7A 109 :ANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW Number of specific fragments extracted= 9 number of extra gaps= 2 total=14901 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_307104120.pdb -s /var/tmp/to_scwrl_307104120.seq -o /var/tmp/from_scwrl_307104120.pdb > /var/tmp/scwrl_307104120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_307104120.pdb Number of alignments=1876 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)P6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 4 :VA 2re7A 3 :NQ T0506 9 :ITPRGT 2re7A 8 :DKIQAV T0506 34 :LHTSRTAALATLD 2re7A 14 :IKDVKFAMISTSN T0506 47 :PVSGYPYTTAT 2re7A 30 :DIHAWPMTTSE T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLA 2re7A 96 :LDEL T0506 172 :TDLSGAEELMAAA 2re7A 100 :WSPVYSAFFANGK T0506 208 :KTGRWKITSIDPDGIDLAS 2re7A 113 :EDANIQLIKVVPHGVECWL Number of specific fragments extracted= 11 number of extra gaps= 3 total=14912 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1508437669.pdb -s /var/tmp/to_scwrl_1508437669.seq -o /var/tmp/from_scwrl_1508437669.pdb > /var/tmp/scwrl_1508437669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508437669.pdb Number of alignments=1877 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 47 :PVSGYPYTTATNIGI 2re7A 30 :DIHAWPMTTSEVNLD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PD 2re7A 92 :DK T0506 189 :TRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLAS 2re7A 94 :AKLDELWSPVYSAFFANGKEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 7 number of extra gaps= 3 total=14919 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2089640403.pdb -s /var/tmp/to_scwrl_2089640403.seq -o /var/tmp/from_scwrl_2089640403.pdb > /var/tmp/scwrl_2089640403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2089640403.pdb Number of alignments=1878 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 4 :V 2re7A 3 :N T0506 24 :F 2re7A 4 :Q T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 47 :PVSGYPYTTATNIGI 2re7A 30 :DIHAWPMTTSEVNLD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAI 2re7A 96 :LDELW T0506 137 :LSLPD 2re7A 101 :SPVYS T0506 201 :LAVLAGAKTGRWKITSIDPDGIDLAS 2re7A 106 :AFFANGKEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14929 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1229291109.pdb -s /var/tmp/to_scwrl_1229291109.seq -o /var/tmp/from_scwrl_1229291109.pdb > /var/tmp/scwrl_1229291109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1229291109.pdb Number of alignments=1879 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIE 2re7A 28 :KGDIHAWPMTTSEV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLA 2re7A 96 :LDEL T0506 172 :TDLS 2re7A 100 :WSPV T0506 199 :SRLAVLAGAKTGRWKITSIDPDGIDLAS 2re7A 104 :YSAFFANGKEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 9 number of extra gaps= 3 total=14938 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_915926050.pdb -s /var/tmp/to_scwrl_915926050.seq -o /var/tmp/from_scwrl_915926050.pdb > /var/tmp/scwrl_915926050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_915926050.pdb Number of alignments=1880 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIEP 2re7A 28 :KGDIHAWPMTTSEVN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPL 2re7A 96 :LDE T0506 135 :L 2re7A 99 :L T0506 172 :TDL 2re7A 100 :WSP T0506 198 :ASRLAVLAGAKTGRWKITSIDPDGIDLAS 2re7A 103 :VYSAFFANGKEDANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14948 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_18741943.pdb -s /var/tmp/to_scwrl_18741943.seq -o /var/tmp/from_scwrl_18741943.pdb > /var/tmp/scwrl_18741943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_18741943.pdb Number of alignments=1881 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIEP 2re7A 28 :KGDIHAWPMTTSEVN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKAKL 2re7A 97 :DELWSPVYSAFFANGKE T0506 209 :TGRWKITSIDPDGIDLAS 2re7A 114 :DANIQLIKVVPHGVECWL Number of specific fragments extracted= 8 number of extra gaps= 3 total=14956 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1274899534.pdb -s /var/tmp/to_scwrl_1274899534.seq -o /var/tmp/from_scwrl_1274899534.pdb > /var/tmp/scwrl_1274899534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274899534.pdb Number of alignments=1882 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKA 2re7A 97 :DELWSPVYSAFFANG T0506 209 :TGRWKITSIDPDGIDLAS 2re7A 114 :DANIQLIKVVPHGVECWL Number of specific fragments extracted= 9 number of extra gaps= 3 total=14965 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2098968948.pdb -s /var/tmp/to_scwrl_2098968948.seq -o /var/tmp/from_scwrl_2098968948.pdb > /var/tmp/scwrl_2098968948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2098968948.pdb Number of alignments=1883 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)D3 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLD 2re7A 8 :DKIQAVIKDVKFAMISTSN T0506 47 :PVSGYPYTTATNI 2re7A 30 :DIHAWPMTTSEVN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PD 2re7A 92 :DK T0506 118 :EVPLAIA 2re7A 95 :KLDELWS T0506 168 :ADLRTDLS 2re7A 102 :PVYSAFFA T0506 205 :A 2re7A 110 :N T0506 209 :TGRWKITSIDPDGIDLAS 2re7A 114 :DANIQLIKVVPHGVECWL Number of specific fragments extracted= 10 number of extra gaps= 3 total=14975 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_568741887.pdb -s /var/tmp/to_scwrl_568741887.seq -o /var/tmp/from_scwrl_568741887.pdb > /var/tmp/scwrl_568741887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_568741887.pdb Number of alignments=1884 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)P23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 20 :AG 2re7A 3 :NQ T0506 25 :EAV 2re7A 8 :DKI T0506 31 :RDVLHTSRTAALATLDP 2re7A 11 :QAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEPDGTPFFFAAGL 2re7A 41 :VNLDNKEIWFIGDK T0506 75 :TLHARNMETDARISVTLAPFGKG 2re7A 56 :SDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLA 2re7A 96 :LDEL T0506 123 :IARYIARYPKAKLY 2re7A 101 :SPVYSAFFANGKED T0506 140 :PDTRLYRLRTEGVQIN 2re7A 115 :ANIQLIKVVPHGVECW T0506 172 :T 2re7A 131 :L Number of specific fragments extracted= 12 number of extra gaps= 3 total=14987 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1801660590.pdb -s /var/tmp/to_scwrl_1801660590.seq -o /var/tmp/from_scwrl_1801660590.pdb > /var/tmp/scwrl_1801660590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1801660590.pdb Number of alignments=1885 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)S19 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)P23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)F24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 20 :AG 2re7A 3 :NQ T0506 25 :E 2re7A 8 :D T0506 29 :VARDVLHTSRTAALATLDP 2re7A 9 :KIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PD 2re7A 92 :DK T0506 118 :EVPLA 2re7A 95 :KLDEL T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQIN 2re7A 113 :EDANIQLIKVVPHGVECW T0506 172 :T 2re7A 131 :L Number of specific fragments extracted= 12 number of extra gaps= 3 total=14999 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_18280299.pdb -s /var/tmp/to_scwrl_18280299.seq -o /var/tmp/from_scwrl_18280299.pdb > /var/tmp/scwrl_18280299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_18280299.pdb Number of alignments=1886 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEPDGTPFFFAA 2re7A 41 :VNLDNKEIWFIG T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2re7A 54 :KTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKAKL 2re7A 97 :DELWSPVYSAFFANGKE T0506 139 :LPDTRLYRLRTEGVQIN 2re7A 114 :DANIQLIKVVPHGVECW T0506 172 :T 2re7A 131 :L Number of specific fragments extracted= 10 number of extra gaps= 3 total=15009 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_263845937.pdb -s /var/tmp/to_scwrl_263845937.seq -o /var/tmp/from_scwrl_263845937.pdb > /var/tmp/scwrl_263845937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263845937.pdb Number of alignments=1887 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2re7A)S2 Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)G133 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)G133 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIEP 2re7A 28 :KGDIHAWPMTTSEVN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKAKL 2re7A 97 :DELWSPVYSAFFANGKE T0506 139 :LPDTRLYRLRTEGV 2re7A 114 :DANIQLIKVVPHGV T0506 223 :DLAS 2re7A 128 :ECWL Number of specific fragments extracted= 9 number of extra gaps= 3 total=15018 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1508982010.pdb -s /var/tmp/to_scwrl_1508982010.seq -o /var/tmp/from_scwrl_1508982010.pdb > /var/tmp/scwrl_1508982010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508982010.pdb Number of alignments=1888 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 33 :VLHTSRTAALATLD 2re7A 13 :VIKDVKFAMISTSN T0506 47 :PVSGYPYTTAT 2re7A 30 :DIHAWPMTTSE T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLA 2re7A 96 :LDEL Number of specific fragments extracted= 7 number of extra gaps= 1 total=15025 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1439655184.pdb -s /var/tmp/to_scwrl_1439655184.seq -o /var/tmp/from_scwrl_1439655184.pdb > /var/tmp/scwrl_1439655184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1439655184.pdb Number of alignments=1889 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 78 :ARNMETDARISVTLAPFGKG 2re7A 59 :VKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PD 2re7A 92 :DK Number of specific fragments extracted= 3 number of extra gaps= 1 total=15028 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1826326058.pdb -s /var/tmp/to_scwrl_1826326058.seq -o /var/tmp/from_scwrl_1826326058.pdb > /var/tmp/scwrl_1826326058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826326058.pdb Number of alignments=1890 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 31 :RDVLHTSRTAALATLD 2re7A 11 :QAVIKDVKFAMISTSN T0506 47 :PVSGYPYTTATNIGI 2re7A 30 :DIHAWPMTTSEVNLD T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLA 2re7A 96 :LDEL Number of specific fragments extracted= 6 number of extra gaps= 1 total=15034 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1152031067.pdb -s /var/tmp/to_scwrl_1152031067.seq -o /var/tmp/from_scwrl_1152031067.pdb > /var/tmp/scwrl_1152031067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1152031067.pdb Number of alignments=1891 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIE 2re7A 28 :KGDIHAWPMTTSEV T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLA 2re7A 96 :LDEL T0506 123 :IARYIARYPKA 2re7A 101 :SPVYSAFFANG T0506 137 :LSLPDTRLYRLRTEGV 2re7A 112 :KEDANIQLIKVVPHGV Number of specific fragments extracted= 8 number of extra gaps= 2 total=15042 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_768118659.pdb -s /var/tmp/to_scwrl_768118659.seq -o /var/tmp/from_scwrl_768118659.pdb > /var/tmp/scwrl_768118659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768118659.pdb Number of alignments=1892 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 29 :VARDVLHTSRTAALATLDP 2re7A 9 :KIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIEP 2re7A 28 :KGDIHAWPMTTSEVN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA Number of specific fragments extracted= 5 number of extra gaps= 1 total=15047 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_938590592.pdb -s /var/tmp/to_scwrl_938590592.seq -o /var/tmp/from_scwrl_938590592.pdb > /var/tmp/scwrl_938590592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938590592.pdb Number of alignments=1893 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIEP 2re7A 28 :KGDIHAWPMTTSEVN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKAKLY 2re7A 97 :DELWSPVYSAFFANGKED T0506 140 :PDTRLYRLRTEGVQ 2re7A 115 :ANIQLIKVVPHGVE Number of specific fragments extracted= 7 number of extra gaps= 2 total=15054 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_90146636.pdb -s /var/tmp/to_scwrl_90146636.seq -o /var/tmp/from_scwrl_90146636.pdb > /var/tmp/scwrl_90146636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_90146636.pdb Number of alignments=1894 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKAKL 2re7A 97 :DELWSPVYSAFFANGKE T0506 139 :LPDTRLYRLRTEGVQ 2re7A 114 :DANIQLIKVVPHGVE Number of specific fragments extracted= 8 number of extra gaps= 2 total=15062 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_326660635.pdb -s /var/tmp/to_scwrl_326660635.seq -o /var/tmp/from_scwrl_326660635.pdb > /var/tmp/scwrl_326660635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326660635.pdb Number of alignments=1895 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PD 2re7A 92 :DK T0506 118 :EVP 2re7A 95 :KLD Number of specific fragments extracted= 4 number of extra gaps= 1 total=15066 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1351486346.pdb -s /var/tmp/to_scwrl_1351486346.seq -o /var/tmp/from_scwrl_1351486346.pdb > /var/tmp/scwrl_1351486346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351486346.pdb Number of alignments=1896 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 23 :PF 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEPDGTPFFFAAGL 2re7A 41 :VNLDNKEIWFIGDK T0506 75 :TLHARNMETDARISVTLAPFGKG 2re7A 56 :SDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLA 2re7A 96 :LDEL T0506 123 :IARYIARYPKAKLY 2re7A 101 :SPVYSAFFANGKED T0506 140 :PDTRLYRLRTEGVQ 2re7A 115 :ANIQLIKVVPHGVE Number of specific fragments extracted= 10 number of extra gaps= 2 total=15076 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1269185902.pdb -s /var/tmp/to_scwrl_1269185902.seq -o /var/tmp/from_scwrl_1269185902.pdb > /var/tmp/scwrl_1269185902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1269185902.pdb Number of alignments=1897 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)P23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 20 :AG 2re7A 3 :NQ T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEP 2re7A 41 :VNL T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PD 2re7A 92 :DK T0506 118 :EVPLA 2re7A 95 :KLDEL T0506 125 :RYIARYPKAK 2re7A 103 :VYSAFFANGK T0506 138 :SLPDTRLYRLRTEGVQI 2re7A 113 :EDANIQLIKVVPHGVEC Number of specific fragments extracted= 10 number of extra gaps= 2 total=15086 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_286998814.pdb -s /var/tmp/to_scwrl_286998814.seq -o /var/tmp/from_scwrl_286998814.pdb > /var/tmp/scwrl_286998814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_286998814.pdb Number of alignments=1898 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 24 :F 2re7A 4 :Q T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIG 2re7A 28 :KGDIHAWPMTTS T0506 61 :IEPDGTPFFFAA 2re7A 41 :VNLDNKEIWFIG T0506 73 :GLTLHARNMETDARISVTLAPFGKG 2re7A 54 :KTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKAKL 2re7A 97 :DELWSPVYSAFFANGKE T0506 139 :LPDTRLYRLRTEGVQI 2re7A 114 :DANIQLIKVVPHGVEC Number of specific fragments extracted= 9 number of extra gaps= 2 total=15095 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1268232990.pdb -s /var/tmp/to_scwrl_1268232990.seq -o /var/tmp/from_scwrl_1268232990.pdb > /var/tmp/scwrl_1268232990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268232990.pdb Number of alignments=1899 # 2re7A read from all-align.a2m # found chain 2re7A in template set Warning: unaligning (T0506)E25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2re7A)H6 Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)H6 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2re7A)I7 Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2re7A)T91 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2re7A)T91 T0506 24 :F 2re7A 4 :Q T0506 28 :RVARDVLHTSRTAALATLDP 2re7A 8 :DKIQAVIKDVKFAMISTSNK T0506 49 :SGYPYTTATNIGIEP 2re7A 28 :KGDIHAWPMTTSEVN T0506 64 :DGTPFFFAAGLTLHARNMETDARISVTLAPFGKG 2re7A 45 :NKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEK T0506 103 :PRLTLVGRADR 2re7A 79 :NYVSISGDAEL T0506 116 :PDE 2re7A 92 :DKA T0506 119 :VPLAIARYIARYPKAKL 2re7A 97 :DELWSPVYSAFFANGKE T0506 139 :LPDTRLYRLRTEGVQ 2re7A 114 :DANIQLIKVVPHGVE Number of specific fragments extracted= 8 number of extra gaps= 2 total=15103 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1375909977.pdb -s /var/tmp/to_scwrl_1375909977.seq -o /var/tmp/from_scwrl_1375909977.pdb > /var/tmp/scwrl_1375909977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375909977.pdb Number of alignments=1900 3ba3A expands to /projects/compbio/data/pdb/3ba3.pdb.gz 3ba3A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 72, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 74, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 76, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 153, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 155, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 157, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 159, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 161, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 163, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 3ba3A Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 3ba3A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 750, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 752, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 754, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 756, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 758, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 760, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 762, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 824, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 826, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 828, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 830, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 832, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 834, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 836, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 838, because occupancy 0.300 <= existing 0.700 in 3ba3A Skipped atom 840, because occupancy 0.300 <= existing 0.700 in 3ba3A # 3ba3A read from all-align.a2m # adding 3ba3A to template set # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)L224 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)A225 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)L242 because last residue in template chain is (3ba3A)F143 T0506 1 :ML 3ba3A 1 :MD T0506 27 :VRVARDV 3ba3A 3 :ISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LAT 3ba3A 18 :LST T0506 47 :PVSGYPYTTATNIGI 3ba3A 21 :AVNNEADVKIVNFVW T0506 62 :EPDGTPFFF 3ba3A 38 :AQPDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLR 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDAIGSTLVVFE T0506 222 :ID 3ba3A 123 :LK T0506 226 :SASDLARLWFAERVET 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15113 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_285669999.pdb -s /var/tmp/to_scwrl_285669999.seq -o /var/tmp/from_scwrl_285669999.pdb > /var/tmp/scwrl_285669999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285669999.pdb Number of alignments=1901 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)L224 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)A225 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)L242 because last residue in template chain is (3ba3A)F143 T0506 1 :M 3ba3A 1 :M T0506 27 :VRVARDV 3ba3A 3 :ISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LAT 3ba3A 18 :LST T0506 47 :PVSGYPYTTATNIGI 3ba3A 21 :AVNNEADVKIVNFVW T0506 62 :EPDGTPFFF 3ba3A 38 :AQPDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIA 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLE T0506 208 :KTGRWKITS 3ba3A 114 :IGSTLVVFE T0506 222 :ID 3ba3A 123 :LK T0506 226 :SASDLARLWFAERVET 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15124 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1821717034.pdb -s /var/tmp/to_scwrl_1821717034.seq -o /var/tmp/from_scwrl_1821717034.pdb > /var/tmp/scwrl_1821717034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1821717034.pdb Number of alignments=1902 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 32 :DV 3ba3A 8 :QV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LAT 3ba3A 18 :LST T0506 47 :PVSGYPYTTATNIGI 3ba3A 21 :AVNNEADVKIVNFVW T0506 62 :EPDGTPFFF 3ba3A 38 :AQPDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDAIG T0506 142 :TRLYRLR 3ba3A 118 :LVVFELK T0506 151 :GVQI 3ba3A 127 :DLFV Number of specific fragments extracted= 9 number of extra gaps= 5 total=15133 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1997712755.pdb -s /var/tmp/to_scwrl_1997712755.seq -o /var/tmp/from_scwrl_1997712755.pdb > /var/tmp/scwrl_1997712755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1997712755.pdb Number of alignments=1903 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 31 :RDV 3ba3A 7 :KQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LAT 3ba3A 18 :LST T0506 47 :PVSGYPYTTATNIGI 3ba3A 21 :AVNNEADVKIVNFVW T0506 62 :EPDGTPFFF 3ba3A 38 :AQPDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPD 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDAIG T0506 142 :TRLYRLR 3ba3A 118 :LVVFELK T0506 151 :GVQI 3ba3A 127 :DLFV Number of specific fragments extracted= 9 number of extra gaps= 5 total=15142 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1685626291.pdb -s /var/tmp/to_scwrl_1685626291.seq -o /var/tmp/from_scwrl_1685626291.pdb > /var/tmp/scwrl_1685626291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1685626291.pdb Number of alignments=1904 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)A99 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)S226 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)Q244 because last residue in template chain is (3ba3A)F143 T0506 1 :M 3ba3A 1 :M T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LAT 3ba3A 18 :LST T0506 47 :PVSGYPYTTATNIGIEP 3ba3A 21 :AVNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 100 :LTL 3ba3A 76 :NPY T0506 103 :PRLTLVGRADRIGPDEVPL 3ba3A 81 :AQHVKLQRSTKTMTDLLPQ T0506 126 :YIARYPKAKLYLSLPDTRLYRL 3ba3A 100 :YLETVPNYQQVWDAIGSTLVVF T0506 223 :DLA 3ba3A 122 :ELK T0506 228 :SDLARLWFAERVETLK 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 12 number of extra gaps= 5 total=15154 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1536221320.pdb -s /var/tmp/to_scwrl_1536221320.seq -o /var/tmp/from_scwrl_1536221320.pdb > /var/tmp/scwrl_1536221320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1536221320.pdb Number of alignments=1905 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)A99 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)S226 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 1 :ML 3ba3A 1 :MD T0506 27 :VRVARDV 3ba3A 3 :ISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LAT 3ba3A 18 :LST T0506 47 :PVSGYPYTTATNIGIEP 3ba3A 21 :AVNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 100 :LTL 3ba3A 76 :NPY T0506 128 :ARYPKAKL 3ba3A 79 :LRAQHVKL T0506 162 :ASNITPADLRTDLSGAEELMA 3ba3A 88 :RSTKTMTDLLPQYLETVPNYQ T0506 192 :NAIKGEASRLAVL 3ba3A 109 :QVWDAIGSTLVVF T0506 223 :DLA 3ba3A 122 :ELK T0506 228 :SDLARLWFAERVETLK 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 13 number of extra gaps= 5 total=15167 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_754980656.pdb -s /var/tmp/to_scwrl_754980656.seq -o /var/tmp/from_scwrl_754980656.pdb > /var/tmp/scwrl_754980656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754980656.pdb Number of alignments=1906 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 T0506 60 :GIEPDGTPFFF 3ba3A 36 :YEAQPDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=15169 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)A99 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 T0506 39 :T 3ba3A 15 :K T0506 42 :LAT 3ba3A 18 :LST T0506 47 :PVSGYPYTTATNIGIEP 3ba3A 21 :AVNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 100 :LTL 3ba3A 76 :NPY Number of specific fragments extracted= 6 number of extra gaps= 3 total=15175 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1992730412.pdb -s /var/tmp/to_scwrl_1992730412.seq -o /var/tmp/from_scwrl_1992730412.pdb > /var/tmp/scwrl_1992730412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1992730412.pdb Number of alignments=1907 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set T0506 131 :PKAKLYLSLPDTRLYRLRTEG 3ba3A 52 :PALKVYDQNPDIAFITIPNDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=15176 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_897175343.pdb -s /var/tmp/to_scwrl_897175343.seq -o /var/tmp/from_scwrl_897175343.pdb > /var/tmp/scwrl_897175343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897175343.pdb Number of alignments=1908 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=15176 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRL 3ba3A 76 :NPYL T0506 108 :VGRADRIGP 3ba3A 80 :RAQHVKLQR T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15187 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_697137412.pdb -s /var/tmp/to_scwrl_697137412.seq -o /var/tmp/from_scwrl_697137412.pdb > /var/tmp/scwrl_697137412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697137412.pdb Number of alignments=1909 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15197 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1074537874.pdb -s /var/tmp/to_scwrl_1074537874.seq -o /var/tmp/from_scwrl_1074537874.pdb > /var/tmp/scwrl_1074537874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074537874.pdb Number of alignments=1910 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15207 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1813101392.pdb -s /var/tmp/to_scwrl_1813101392.seq -o /var/tmp/from_scwrl_1813101392.pdb > /var/tmp/scwrl_1813101392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813101392.pdb Number of alignments=1911 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPR 3ba3A 76 :NPY T0506 107 :LVGRADRIGP 3ba3A 79 :LRAQHVKLQR T0506 117 :D 3ba3A 91 :K T0506 119 :VPLAIARYIARYPKAKLYLSL 3ba3A 93 :MTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 12 number of extra gaps= 5 total=15219 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_715879355.pdb -s /var/tmp/to_scwrl_715879355.seq -o /var/tmp/from_scwrl_715879355.pdb > /var/tmp/scwrl_715879355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715879355.pdb Number of alignments=1912 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 118 :E 3ba3A 90 :T T0506 119 :VPLAIARYIARYPKAKLYLSL 3ba3A 93 :MTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15230 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_201953762.pdb -s /var/tmp/to_scwrl_201953762.seq -o /var/tmp/from_scwrl_201953762.pdb > /var/tmp/scwrl_201953762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_201953762.pdb Number of alignments=1913 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNAS 3ba3A 127 :DLFVDAGVGGEKQ T0506 232 :RLW 3ba3A 140 :TLT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15240 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1764586694.pdb -s /var/tmp/to_scwrl_1764586694.seq -o /var/tmp/from_scwrl_1764586694.pdb > /var/tmp/scwrl_1764586694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1764586694.pdb Number of alignments=1914 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 9 number of extra gaps= 5 total=15249 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1284621242.pdb -s /var/tmp/to_scwrl_1284621242.seq -o /var/tmp/from_scwrl_1284621242.pdb > /var/tmp/scwrl_1284621242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1284621242.pdb Number of alignments=1915 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 117 :DE 3ba3A 90 :TK T0506 119 :VPLAIARYIARYPKAKLYLSL 3ba3A 93 :MTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15260 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2003614352.pdb -s /var/tmp/to_scwrl_2003614352.seq -o /var/tmp/from_scwrl_2003614352.pdb > /var/tmp/scwrl_2003614352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2003614352.pdb Number of alignments=1916 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 23 :PFE 3ba3A 2 :DIS T0506 29 :VARDV 3ba3A 5 :LLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTL 3ba3A 76 :NPYLRA T0506 108 :VGRADRIG 3ba3A 83 :HVKLQRST T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 12 number of extra gaps= 5 total=15272 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1782866993.pdb -s /var/tmp/to_scwrl_1782866993.seq -o /var/tmp/from_scwrl_1782866993.pdb > /var/tmp/scwrl_1782866993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782866993.pdb Number of alignments=1917 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 3 :D 3ba3A 2 :D T0506 27 :VRVARDV 3ba3A 3 :ISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEPDGT 3ba3A 23 :NNEADVKIVNFVWYEAQP T0506 67 :PFFF 3ba3A 43 :LYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTL 3ba3A 76 :NPYLRA T0506 108 :VGRADRIG 3ba3A 83 :HVKLQRST T0506 118 :EVPLAIARYIARYPKAKLYLSL 3ba3A 92 :TMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE T0506 230 :LARLW 3ba3A 138 :KQTLT Number of specific fragments extracted= 13 number of extra gaps= 5 total=15285 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1548467179.pdb -s /var/tmp/to_scwrl_1548467179.seq -o /var/tmp/from_scwrl_1548467179.pdb > /var/tmp/scwrl_1548467179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1548467179.pdb Number of alignments=1918 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLV 3ba3A 76 :NPYLRAQ T0506 110 :RADRIGP 3ba3A 83 :HVKLQRS T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15296 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1365112715.pdb -s /var/tmp/to_scwrl_1365112715.seq -o /var/tmp/from_scwrl_1365112715.pdb > /var/tmp/scwrl_1365112715.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1365112715.pdb Number of alignments=1919 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEPD 3ba3A 22 :VNNEADVKIVNFVWYEA T0506 65 :GTPFFF 3ba3A 41 :DTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG T0506 229 :DLARLW 3ba3A 137 :EKQTLT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15306 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1075038531.pdb -s /var/tmp/to_scwrl_1075038531.seq -o /var/tmp/from_scwrl_1075038531.pdb > /var/tmp/scwrl_1075038531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075038531.pdb Number of alignments=1920 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRL 3ba3A 76 :NPYL T0506 108 :VGRADRIGP 3ba3A 80 :RAQHVKLQR T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 11 number of extra gaps= 5 total=15317 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1227309590.pdb -s /var/tmp/to_scwrl_1227309590.seq -o /var/tmp/from_scwrl_1227309590.pdb > /var/tmp/scwrl_1227309590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1227309590.pdb Number of alignments=1921 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG Number of specific fragments extracted= 10 number of extra gaps= 5 total=15327 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_369660136.pdb -s /var/tmp/to_scwrl_369660136.seq -o /var/tmp/from_scwrl_369660136.pdb > /var/tmp/scwrl_369660136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_369660136.pdb Number of alignments=1922 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG Number of specific fragments extracted= 10 number of extra gaps= 5 total=15337 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1843157190.pdb -s /var/tmp/to_scwrl_1843157190.seq -o /var/tmp/from_scwrl_1843157190.pdb > /var/tmp/scwrl_1843157190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1843157190.pdb Number of alignments=1923 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 27 :VRVARDV 3ba3A 3 :ISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPR 3ba3A 76 :NPY T0506 107 :LVGRADRIGP 3ba3A 79 :LRAQHVKLQR T0506 117 :D 3ba3A 91 :K T0506 119 :VPLAIARYIARYPKAKLYLSL 3ba3A 93 :MTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 12 number of extra gaps= 5 total=15349 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_18416536.pdb -s /var/tmp/to_scwrl_18416536.seq -o /var/tmp/from_scwrl_18416536.pdb > /var/tmp/scwrl_18416536.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_18416536.pdb Number of alignments=1924 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 118 :E 3ba3A 90 :T T0506 119 :VPLAIARYIARYPKAKLYLSL 3ba3A 93 :MTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 11 number of extra gaps= 5 total=15360 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_459806772.pdb -s /var/tmp/to_scwrl_459806772.seq -o /var/tmp/from_scwrl_459806772.pdb > /var/tmp/scwrl_459806772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_459806772.pdb Number of alignments=1925 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 28 :RVARDV 3ba3A 4 :SLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 9 number of extra gaps= 5 total=15369 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_22334179.pdb -s /var/tmp/to_scwrl_22334179.seq -o /var/tmp/from_scwrl_22334179.pdb > /var/tmp/scwrl_22334179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22334179.pdb Number of alignments=1926 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 9 number of extra gaps= 5 total=15378 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1369902882.pdb -s /var/tmp/to_scwrl_1369902882.seq -o /var/tmp/from_scwrl_1369902882.pdb > /var/tmp/scwrl_1369902882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1369902882.pdb Number of alignments=1927 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 105 :LTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQR T0506 117 :DE 3ba3A 90 :TK T0506 119 :VPLAIARYIARYPKAKLYLSL 3ba3A 93 :MTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 11 number of extra gaps= 5 total=15389 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1728992675.pdb -s /var/tmp/to_scwrl_1728992675.seq -o /var/tmp/from_scwrl_1728992675.pdb > /var/tmp/scwrl_1728992675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728992675.pdb Number of alignments=1928 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 28 :RVARDV 3ba3A 4 :SLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTL 3ba3A 76 :NPYLRA T0506 108 :VGRADRIG 3ba3A 83 :HVKLQRST T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASNI 3ba3A 127 :DLFVDAGVGGEKQTL Number of specific fragments extracted= 11 number of extra gaps= 5 total=15400 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_309332993.pdb -s /var/tmp/to_scwrl_309332993.seq -o /var/tmp/from_scwrl_309332993.pdb > /var/tmp/scwrl_309332993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_309332993.pdb Number of alignments=1929 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 28 :RVARDV 3ba3A 4 :SLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEPDGT 3ba3A 23 :NNEADVKIVNFVWYEAQP T0506 67 :PFFF 3ba3A 43 :LYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTL 3ba3A 76 :NPYLRA T0506 108 :VGRADRIG 3ba3A 83 :HVKLQRST T0506 118 :EVPLAIARYIARYPKAKLYLSL 3ba3A 92 :TMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE T0506 230 :LARLW 3ba3A 138 :KQTLT Number of specific fragments extracted= 12 number of extra gaps= 5 total=15412 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_490652226.pdb -s /var/tmp/to_scwrl_490652226.seq -o /var/tmp/from_scwrl_490652226.pdb > /var/tmp/scwrl_490652226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_490652226.pdb Number of alignments=1930 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 27 :VRVARDV 3ba3A 3 :ISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEP 3ba3A 22 :VNNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLV 3ba3A 76 :NPYLRAQ T0506 110 :RADRIGP 3ba3A 83 :HVKLQRS T0506 117 :DEVPLAIARYIARYPKAKLYLSL 3ba3A 91 :KTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPARNASN 3ba3A 127 :DLFVDAGVGGEKQT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15423 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_957419006.pdb -s /var/tmp/to_scwrl_957419006.seq -o /var/tmp/from_scwrl_957419006.pdb > /var/tmp/scwrl_957419006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957419006.pdb Number of alignments=1931 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATL 3ba3A 18 :LSTA T0506 48 :VSGYPYTTATNIGIEPD 3ba3A 22 :VNNEADVKIVNFVWYEA T0506 65 :GTPFFF 3ba3A 41 :DTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWDA T0506 140 :PDTRLYRLR 3ba3A 116 :STLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG Number of specific fragments extracted= 9 number of extra gaps= 5 total=15432 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_595002993.pdb -s /var/tmp/to_scwrl_595002993.seq -o /var/tmp/from_scwrl_595002993.pdb > /var/tmp/scwrl_595002993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_595002993.pdb Number of alignments=1932 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 47 :PVSGYPYTTATNIGIEPDG 3ba3A 24 :NEADVKIVNFVWYEAQPDT T0506 67 :PFFF 3ba3A 43 :LYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNA 3ba3A 127 :DLFVDAGVGGEK T0506 186 :S 3ba3A 139 :Q T0506 232 :RLW 3ba3A 140 :TLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15443 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_164885613.pdb -s /var/tmp/to_scwrl_164885613.seq -o /var/tmp/from_scwrl_164885613.pdb > /var/tmp/scwrl_164885613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_164885613.pdb Number of alignments=1933 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 47 :PVSGYPYTTATNIGIEPDGT 3ba3A 24 :NEADVKIVNFVWYEAQPDTL T0506 68 :FFF 3ba3A 44 :YFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 98 :DALTLPRLTLVGRADRIGP 3ba3A 77 :PYLRAQHVKLQRSTKTMTD T0506 122 :AIARYIARYPKAKLYLS 3ba3A 96 :LLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 10 number of extra gaps= 4 total=15453 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_807648114.pdb -s /var/tmp/to_scwrl_807648114.seq -o /var/tmp/from_scwrl_807648114.pdb > /var/tmp/scwrl_807648114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_807648114.pdb Number of alignments=1934 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)L174 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 47 :PVSGYPYTTATNIGIEPDGT 3ba3A 24 :NEADVKIVNFVWYEAQPDTL T0506 68 :FFF 3ba3A 44 :YFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 98 :DALTLPRLTLVGRADR 3ba3A 77 :PYLRAQHVKLQRSTKT T0506 119 :VPLAIARYIARYPKAKLYLS 3ba3A 93 :MTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 10 number of extra gaps= 4 total=15463 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_133145637.pdb -s /var/tmp/to_scwrl_133145637.seq -o /var/tmp/from_scwrl_133145637.pdb > /var/tmp/scwrl_133145637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_133145637.pdb Number of alignments=1935 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 104 :RLTLVGRADRIGPDE 3ba3A 76 :NPYLRAQHVKLQRST T0506 119 :VPLAIARYIARYPKAKLYLS 3ba3A 93 :MTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15473 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1701106934.pdb -s /var/tmp/to_scwrl_1701106934.seq -o /var/tmp/from_scwrl_1701106934.pdb > /var/tmp/scwrl_1701106934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1701106934.pdb Number of alignments=1936 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L2 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)P167 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 50 :GYPYTTATNIGIEP 3ba3A 24 :NEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRL 3ba3A 76 :NPYL T0506 108 :VGRADRIGPDE 3ba3A 80 :RAQHVKLQRST T0506 119 :VPLAIARYIARYPKAKLYLS 3ba3A 93 :MTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNASNIT 3ba3A 127 :DLFVDAGVGGEKQTLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15484 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1562628769.pdb -s /var/tmp/to_scwrl_1562628769.seq -o /var/tmp/from_scwrl_1562628769.pdb > /var/tmp/scwrl_1562628769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562628769.pdb Number of alignments=1937 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNASN 3ba3A 127 :DLFVDAGVGGEKQT T0506 233 :LW 3ba3A 141 :LT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15494 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2125876049.pdb -s /var/tmp/to_scwrl_2125876049.seq -o /var/tmp/from_scwrl_2125876049.pdb > /var/tmp/scwrl_2125876049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125876049.pdb Number of alignments=1938 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 50 :GYPYTTATNIGIEP 3ba3A 24 :NEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNASNI 3ba3A 127 :DLFVDAGVGGEKQTL T0506 234 :W 3ba3A 142 :T Number of specific fragments extracted= 10 number of extra gaps= 5 total=15504 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_450798630.pdb -s /var/tmp/to_scwrl_450798630.seq -o /var/tmp/from_scwrl_450798630.pdb > /var/tmp/scwrl_450798630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_450798630.pdb Number of alignments=1939 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)P6 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)L174 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 47 :PVSGYPYTTATNIGIE 3ba3A 24 :NEADVKIVNFVWYEAQ T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 98 :DALTLPRLTL 3ba3A 77 :PYLRAQHVKL T0506 115 :GPD 3ba3A 87 :QRS T0506 118 :EVPLAIARYIARYPKAKLYLS 3ba3A 92 :TMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNAS 3ba3A 127 :DLFVDAGVGGEKQ T0506 171 :RTD 3ba3A 140 :TLT Number of specific fragments extracted= 12 number of extra gaps= 4 total=15516 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_112282534.pdb -s /var/tmp/to_scwrl_112282534.seq -o /var/tmp/from_scwrl_112282534.pdb > /var/tmp/scwrl_112282534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_112282534.pdb Number of alignments=1940 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 23 :PF 3ba3A 2 :DI T0506 28 :RVARDV 3ba3A 4 :SLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGP 3ba3A 127 :DLFVDAGV T0506 227 :ASDLARLW 3ba3A 135 :GGEKQTLT Number of specific fragments extracted= 11 number of extra gaps= 5 total=15527 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1052930278.pdb -s /var/tmp/to_scwrl_1052930278.seq -o /var/tmp/from_scwrl_1052930278.pdb > /var/tmp/scwrl_1052930278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052930278.pdb Number of alignments=1941 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)A22 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 23 :PFE 3ba3A 2 :DIS T0506 29 :VARDV 3ba3A 5 :LLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLV 3ba3A 76 :NPYLRAQ T0506 109 :GRADRIGPD 3ba3A 84 :VKLQRSTKT T0506 119 :VPLAIARYIARYPKAKLYLS 3ba3A 93 :MTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG T0506 229 :DLARLW 3ba3A 137 :EKQTLT Number of specific fragments extracted= 13 number of extra gaps= 5 total=15540 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_116416376.pdb -s /var/tmp/to_scwrl_116416376.seq -o /var/tmp/from_scwrl_116416376.pdb > /var/tmp/scwrl_116416376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_116416376.pdb Number of alignments=1942 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG T0506 161 :NASNI 3ba3A 138 :KQTLT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15550 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_828161890.pdb -s /var/tmp/to_scwrl_828161890.seq -o /var/tmp/from_scwrl_828161890.pdb > /var/tmp/scwrl_828161890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_828161890.pdb Number of alignments=1943 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)E25 because first residue in template chain is (3ba3A)M1 Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 Warning: unaligning (T0506)F235 because last residue in template chain is (3ba3A)F143 T0506 26 :AVRVARDV 3ba3A 2 :DISLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNASN 3ba3A 127 :DLFVDAGVGGEKQT T0506 233 :LW 3ba3A 141 :LT Number of specific fragments extracted= 10 number of extra gaps= 5 total=15560 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1254884039.pdb -s /var/tmp/to_scwrl_1254884039.seq -o /var/tmp/from_scwrl_1254884039.pdb > /var/tmp/scwrl_1254884039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1254884039.pdb Number of alignments=1944 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 32 :DV 3ba3A 8 :QV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 47 :PVSGYPYTTATNIGIEPD 3ba3A 24 :NEADVKIVNFVWYEAQPD T0506 66 :TPFFF 3ba3A 42 :TLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGG 3ba3A 127 :DLFVDAG Number of specific fragments extracted= 9 number of extra gaps= 5 total=15569 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1881003070.pdb -s /var/tmp/to_scwrl_1881003070.seq -o /var/tmp/from_scwrl_1881003070.pdb > /var/tmp/scwrl_1881003070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1881003070.pdb Number of alignments=1945 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 122 :AIARYIARYPKAKLYLS 3ba3A 96 :LLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG Number of specific fragments extracted= 3 number of extra gaps= 1 total=15572 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2112783132.pdb -s /var/tmp/to_scwrl_2112783132.seq -o /var/tmp/from_scwrl_2112783132.pdb > /var/tmp/scwrl_2112783132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2112783132.pdb Number of alignments=1946 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 32 :DV 3ba3A 8 :QV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 47 :PVSGYPYTTATNIGIEPDGT 3ba3A 24 :NEADVKIVNFVWYEAQPDTL T0506 68 :FFF 3ba3A 44 :YFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 98 :DALTLPRLTLVGRAD 3ba3A 77 :PYLRAQHVKLQRSTK T0506 118 :EVPLAIARYIARYPKAKLYLS 3ba3A 92 :TMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 10 number of extra gaps= 4 total=15582 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1111014745.pdb -s /var/tmp/to_scwrl_1111014745.seq -o /var/tmp/from_scwrl_1111014745.pdb > /var/tmp/scwrl_1111014745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111014745.pdb Number of alignments=1947 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)P103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 29 :VARDV 3ba3A 5 :LLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 104 :RLTLVGRADRIGPDE 3ba3A 76 :NPYLRAQHVKLQRST T0506 119 :VPLAIARYIARYPKAKLYLS 3ba3A 93 :MTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNA 3ba3A 127 :DLFVDAGVGGEK Number of specific fragments extracted= 10 number of extra gaps= 5 total=15592 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1516386416.pdb -s /var/tmp/to_scwrl_1516386416.seq -o /var/tmp/from_scwrl_1516386416.pdb > /var/tmp/scwrl_1516386416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1516386416.pdb Number of alignments=1948 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 29 :VARDV 3ba3A 5 :LLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 50 :GYPYTTATNIGIEP 3ba3A 24 :NEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRL 3ba3A 76 :NPYL T0506 108 :VGRADRIGPDE 3ba3A 80 :RAQHVKLQRST T0506 119 :VPLAIARYIARYPKAKLYLS 3ba3A 93 :MTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNA 3ba3A 127 :DLFVDAGVGGEK Number of specific fragments extracted= 11 number of extra gaps= 5 total=15603 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1513766664.pdb -s /var/tmp/to_scwrl_1513766664.seq -o /var/tmp/from_scwrl_1513766664.pdb > /var/tmp/scwrl_1513766664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513766664.pdb Number of alignments=1949 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 29 :VARDV 3ba3A 5 :LLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNA 3ba3A 127 :DLFVDAGVGGEK Number of specific fragments extracted= 9 number of extra gaps= 5 total=15612 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_328643814.pdb -s /var/tmp/to_scwrl_328643814.seq -o /var/tmp/from_scwrl_328643814.pdb > /var/tmp/scwrl_328643814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328643814.pdb Number of alignments=1950 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 29 :VARDV 3ba3A 5 :LLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 50 :GYPYTTATNIGIEP 3ba3A 24 :NEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNA 3ba3A 127 :DLFVDAGVGGEK Number of specific fragments extracted= 9 number of extra gaps= 5 total=15621 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_443941301.pdb -s /var/tmp/to_scwrl_443941301.seq -o /var/tmp/from_scwrl_443941301.pdb > /var/tmp/scwrl_443941301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_443941301.pdb Number of alignments=1951 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 120 :PLAIARYIARYPKAKLYLS 3ba3A 94 :TDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 3 number of extra gaps= 1 total=15624 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_593592609.pdb -s /var/tmp/to_scwrl_593592609.seq -o /var/tmp/from_scwrl_593592609.pdb > /var/tmp/scwrl_593592609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593592609.pdb Number of alignments=1952 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 30 :ARDV 3ba3A 6 :LKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG Number of specific fragments extracted= 9 number of extra gaps= 5 total=15633 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_698303951.pdb -s /var/tmp/to_scwrl_698303951.seq -o /var/tmp/from_scwrl_698303951.pdb > /var/tmp/scwrl_698303951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698303951.pdb Number of alignments=1953 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 54 :TTATNIGIEP 3ba3A 28 :VKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLV 3ba3A 76 :NPYLRAQ T0506 109 :GRADRIGPD 3ba3A 84 :VKLQRSTKT T0506 119 :VPLAIARYIARYPKAKLYLS 3ba3A 93 :MTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPAR 3ba3A 127 :DLFVDAGVGG T0506 161 :NASNI 3ba3A 138 :KQTLT Number of specific fragments extracted= 9 number of extra gaps= 3 total=15642 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_139614845.pdb -s /var/tmp/to_scwrl_139614845.seq -o /var/tmp/from_scwrl_139614845.pdb > /var/tmp/scwrl_139614845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_139614845.pdb Number of alignments=1954 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 29 :VARDV 3ba3A 5 :LLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARN 3ba3A 127 :DLFVDAGVGGE Number of specific fragments extracted= 9 number of extra gaps= 5 total=15651 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_612009145.pdb -s /var/tmp/to_scwrl_612009145.seq -o /var/tmp/from_scwrl_612009145.pdb > /var/tmp/scwrl_612009145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612009145.pdb Number of alignments=1955 # 3ba3A read from all-align.a2m # found chain 3ba3A in template set Warning: unaligning (T0506)L34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)Q11 Warning: unaligning (T0506)H35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)Q11 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (3ba3A)A17 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (3ba3A)A17 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3ba3A)V48 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3ba3A)V48 Warning: unaligning (T0506)L100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (3ba3A)G75 Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (3ba3A)G75 Warning: unaligning (T0506)T149 because of BadResidue code BAD_PEPTIDE in next template residue (3ba3A)T126 Warning: unaligning (T0506)E150 because of BadResidue code BAD_PEPTIDE at template residue (3ba3A)T126 T0506 28 :RVARDV 3ba3A 4 :SLLKQV T0506 36 :TSRT 3ba3A 12 :STNK T0506 42 :LATLD 3ba3A 18 :LSTAV T0506 49 :SGYPYTTATNIGIEP 3ba3A 23 :NNEADVKIVNFVWYE T0506 64 :DGTPFFF 3ba3A 40 :PDTLYFS T0506 73 :GLTLHARNMETDARISVTLAPFGKG 3ba3A 49 :KTSPALKVYDQNPDIAFITIPNDGT T0506 102 :LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 3ba3A 76 :NPYLRAQHVKLQRSTKTMTDLLPQYLETVPNYQQVWD T0506 139 :LPDTRLYRLR 3ba3A 115 :GSTLVVFELK T0506 151 :GVQINGGPARNA 3ba3A 127 :DLFVDAGVGGEK Number of specific fragments extracted= 9 number of extra gaps= 5 total=15660 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1158110722.pdb -s /var/tmp/to_scwrl_1158110722.seq -o /var/tmp/from_scwrl_1158110722.pdb > /var/tmp/scwrl_1158110722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1158110722.pdb Number of alignments=1956 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)A250 because last residue in template chain is (3cp3A)V137 T0506 21 :GAPFEAVRVARDVLHTSRTAALATLD 3cp3A 8 :PITILDSSDSLSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :GTPFFFAA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRI 3cp3A 86 :GWSVVLKGNAYVV T0506 115 :GPDEVPLAIARYIARYPKAKLY 3cp3A 100 :DTEEARHADTLGLKPWLPTLKY T0506 235 :FAERVETLKQFEKAL 3cp3A 122 :NFVRIDVREVSGRAF Number of specific fragments extracted= 7 number of extra gaps= 2 total=15667 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_161949024.pdb -s /var/tmp/to_scwrl_161949024.seq -o /var/tmp/from_scwrl_161949024.pdb > /var/tmp/scwrl_161949024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161949024.pdb Number of alignments=1957 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)A250 because last residue in template chain is (3cp3A)V137 T0506 30 :ARDVLHTSRTAALATLD 3cp3A 17 :SLSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :GTPFFFAA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIARYIARYPKAKLY 3cp3A 102 :EEARHADTLGLKPWLPTLKY T0506 238 :RVETLKQFEKAL 3cp3A 125 :RIDVREVSGRAF Number of specific fragments extracted= 7 number of extra gaps= 2 total=15674 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1981912027.pdb -s /var/tmp/to_scwrl_1981912027.seq -o /var/tmp/from_scwrl_1981912027.pdb > /var/tmp/scwrl_1981912027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1981912027.pdb Number of alignments=1958 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 30 :ARDVLHTSRTAALATLD 3cp3A 17 :SLSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :GTPFFFAA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRI 3cp3A 86 :GWSVVLKGNAYVV T0506 115 :GPDEVPLAIARYIARYPKAKLY 3cp3A 100 :DTEEARHADTLGLKPWLPTLKY T0506 143 :RLYRLRTEGV 3cp3A 122 :NFVRIDVREV Number of specific fragments extracted= 7 number of extra gaps= 2 total=15681 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_739619751.pdb -s /var/tmp/to_scwrl_739619751.seq -o /var/tmp/from_scwrl_739619751.pdb > /var/tmp/scwrl_739619751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_739619751.pdb Number of alignments=1959 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 T0506 30 :ARDVLHTSRTAALATLD 3cp3A 17 :SLSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :GTPFFFAA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIARYIARYPKAKLY 3cp3A 102 :EEARHADTLGLKPWLPTLKY T0506 143 :RLYRLRTEGV 3cp3A 122 :NFVRIDVREV Number of specific fragments extracted= 7 number of extra gaps= 2 total=15688 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_471282017.pdb -s /var/tmp/to_scwrl_471282017.seq -o /var/tmp/from_scwrl_471282017.pdb > /var/tmp/scwrl_471282017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_471282017.pdb Number of alignments=1960 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 T0506 21 :GAPFEAVRVARDVLHTSRTAALATLD 3cp3A 8 :PITILDSSDSLSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :G 3cp3A 50 :A T0506 66 :TPFFFAA 3cp3A 53 :PRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 227 :ASDLARLWFAERVETLKQFEKALAQLLK 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADTLGLK Number of specific fragments extracted= 6 number of extra gaps= 2 total=15694 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_325080606.pdb -s /var/tmp/to_scwrl_325080606.seq -o /var/tmp/from_scwrl_325080606.pdb > /var/tmp/scwrl_325080606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_325080606.pdb Number of alignments=1961 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 T0506 21 :GAPFEAVRVARDVLHTSRTAALATLD 3cp3A 8 :PITILDSSDSLSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :G 3cp3A 50 :A T0506 66 :TPFFF 3cp3A 55 :VYFRT T0506 75 :TL 3cp3A 64 :KL T0506 79 :RNMETDARISVTL 3cp3A 66 :FSVNLNSDVLFEV T0506 214 :ITSIDPDGIDLASASDLARLWFAERVETLK 3cp3A 94 :NAYVVRDTEEARHADTLGLKPWLPTLKYNF T0506 244 :QFEKALAQLLK 3cp3A 127 :DVREVSGRAFV Number of specific fragments extracted= 8 number of extra gaps= 2 total=15702 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1697038757.pdb -s /var/tmp/to_scwrl_1697038757.seq -o /var/tmp/from_scwrl_1697038757.pdb > /var/tmp/scwrl_1697038757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1697038757.pdb Number of alignments=1962 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 T0506 31 :RDVLHTSRTAALATLD 3cp3A 18 :LSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :G 3cp3A 50 :A T0506 66 :TPFFF 3cp3A 55 :VYFRT T0506 75 :TLHARNMETDA 3cp3A 64 :KLFSVNLNSDV Number of specific fragments extracted= 5 number of extra gaps= 1 total=15707 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1066285010.pdb -s /var/tmp/to_scwrl_1066285010.seq -o /var/tmp/from_scwrl_1066285010.pdb > /var/tmp/scwrl_1066285010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066285010.pdb Number of alignments=1963 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 T0506 31 :RDVLHTSRTAALATLD 3cp3A 18 :LSRLSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 65 :G 3cp3A 50 :A T0506 66 :TPFFF 3cp3A 55 :VYFRT T0506 75 :TLHARNMET 3cp3A 64 :KLFSVNLNS T0506 86 :RISVTL 3cp3A 73 :DVLFEV T0506 102 :LPRLTLVGRADRIGPDEV 3cp3A 86 :GWSVVLKGNAYVVRDTEE Number of specific fragments extracted= 7 number of extra gaps= 2 total=15714 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_489966220.pdb -s /var/tmp/to_scwrl_489966220.seq -o /var/tmp/from_scwrl_489966220.pdb > /var/tmp/scwrl_489966220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_489966220.pdb Number of alignments=1964 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 T0506 46 :DPVSGYPYTTATN 3cp3A 35 :DDLDIFPVNFVLD T0506 61 :IEPDGTPFFF 3cp3A 50 :AEQPRVYFRT T0506 75 :TLHARNMETDARISV 3cp3A 64 :KLFSVNLNSDVLFEV Number of specific fragments extracted= 3 number of extra gaps= 1 total=15717 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_357203224.pdb -s /var/tmp/to_scwrl_357203224.seq -o /var/tmp/from_scwrl_357203224.pdb > /var/tmp/scwrl_357203224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_357203224.pdb Number of alignments=1965 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)T90 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)L91 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)P93 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 T0506 46 :DPVSGYPYTTATN 3cp3A 35 :DDLDIFPVNFVLD T0506 61 :IEPDGTPFFF 3cp3A 50 :AEQPRVYFRT T0506 75 :TLHARNMETDARISV 3cp3A 64 :KLFSVNLNSDVLFEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=15720 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 8 :VITPRGTKIE 3cp3A 8 :PITILDSSDS T0506 31 :RDVLHTSRTAALATLD 3cp3A 18 :LSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQING 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15729 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1199430647.pdb -s /var/tmp/to_scwrl_1199430647.seq -o /var/tmp/from_scwrl_1199430647.pdb > /var/tmp/scwrl_1199430647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199430647.pdb Number of alignments=1966 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQING 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15738 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_43589507.pdb -s /var/tmp/to_scwrl_43589507.seq -o /var/tmp/from_scwrl_43589507.pdb > /var/tmp/scwrl_43589507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43589507.pdb Number of alignments=1967 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQING 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15747 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1919831994.pdb -s /var/tmp/to_scwrl_1919831994.seq -o /var/tmp/from_scwrl_1919831994.pdb > /var/tmp/scwrl_1919831994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1919831994.pdb Number of alignments=1968 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VS 3cp3A 34 :KD T0506 51 :YPYTTATNIGIE 3cp3A 36 :DLDIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 124 :AR 3cp3A 108 :DT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15757 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1177823049.pdb -s /var/tmp/to_scwrl_1177823049.seq -o /var/tmp/from_scwrl_1177823049.pdb > /var/tmp/scwrl_1177823049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1177823049.pdb Number of alignments=1969 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 124 :AR 3cp3A 108 :DT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15767 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_494388137.pdb -s /var/tmp/to_scwrl_494388137.seq -o /var/tmp/from_scwrl_494388137.pdb > /var/tmp/scwrl_494388137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_494388137.pdb Number of alignments=1970 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 23 :PFEAVRVARDVLHTSRTAALATLD 3cp3A 10 :TILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15776 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2032114528.pdb -s /var/tmp/to_scwrl_2032114528.seq -o /var/tmp/from_scwrl_2032114528.pdb > /var/tmp/scwrl_2032114528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2032114528.pdb Number of alignments=1971 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15785 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_83269680.pdb -s /var/tmp/to_scwrl_83269680.seq -o /var/tmp/from_scwrl_83269680.pdb > /var/tmp/scwrl_83269680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_83269680.pdb Number of alignments=1972 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P7 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 8 :VITPRGT 3cp3A 8 :PITILDS T0506 28 :RVARDVLHTSRTAALATLD 3cp3A 15 :SDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 76 :LHA 3cp3A 64 :KLF T0506 80 :NMETDARISVTL 3cp3A 67 :SVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQING 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15795 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_610804513.pdb -s /var/tmp/to_scwrl_610804513.seq -o /var/tmp/from_scwrl_610804513.pdb > /var/tmp/scwrl_610804513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_610804513.pdb Number of alignments=1973 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)K96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 26 :AVRVARDVLHTSRTAALATLD 3cp3A 13 :DSSDSLSRLSSESVGRLVVHR T0506 48 :VSG 3cp3A 34 :KDD T0506 52 :PYTTATNIGIE 3cp3A 37 :LDIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 82 :ETDARISVTL 3cp3A 69 :NLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 132 :K 3cp3A 108 :D T0506 133 :AKLYLSLPDTRLYRLRTEGVQING 3cp3A 112 :LKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15805 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_712792771.pdb -s /var/tmp/to_scwrl_712792771.seq -o /var/tmp/from_scwrl_712792771.pdb > /var/tmp/scwrl_712792771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_712792771.pdb Number of alignments=1974 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 23 :P 3cp3A 13 :D T0506 27 :VRVARDVLHTSRTAALATLD 3cp3A 14 :SSDSLSRLSSESVGRLVVHR T0506 48 :VSG 3cp3A 34 :KDD T0506 52 :PYTTATNIGIE 3cp3A 37 :LDIFPVNFVLD T0506 64 :DGT 3cp3A 51 :EQP T0506 67 :PFFFA 3cp3A 55 :VYFRT T0506 84 :DARISVTL 3cp3A 71 :NSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 132 :K 3cp3A 108 :D T0506 133 :AKLYLSLPDTRLYRLRTEGVQING 3cp3A 112 :LKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 12 number of extra gaps= 1 total=15817 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1338153720.pdb -s /var/tmp/to_scwrl_1338153720.seq -o /var/tmp/from_scwrl_1338153720.pdb > /var/tmp/scwrl_1338153720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1338153720.pdb Number of alignments=1975 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 25 :EAVRVARDVLHTSRTAALATLD 3cp3A 12 :LDSSDSLSRLSSESVGRLVVHR T0506 48 :VSG 3cp3A 34 :KDD T0506 52 :PYTTATNIGIE 3cp3A 37 :LDIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 124 :AR 3cp3A 108 :DT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15827 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_344323936.pdb -s /var/tmp/to_scwrl_344323936.seq -o /var/tmp/from_scwrl_344323936.pdb > /var/tmp/scwrl_344323936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_344323936.pdb Number of alignments=1976 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 24 :FEAVRVARDVLHTSRTAALATLD 3cp3A 11 :ILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 63 :PDGTPFFFA 3cp3A 51 :EQPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 1 total=15836 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_678092256.pdb -s /var/tmp/to_scwrl_678092256.seq -o /var/tmp/from_scwrl_678092256.pdb > /var/tmp/scwrl_678092256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678092256.pdb Number of alignments=1977 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQING 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15845 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_301684819.pdb -s /var/tmp/to_scwrl_301684819.seq -o /var/tmp/from_scwrl_301684819.pdb > /var/tmp/scwrl_301684819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_301684819.pdb Number of alignments=1978 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQI 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSG Number of specific fragments extracted= 9 number of extra gaps= 2 total=15854 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1860710353.pdb -s /var/tmp/to_scwrl_1860710353.seq -o /var/tmp/from_scwrl_1860710353.pdb > /var/tmp/scwrl_1860710353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860710353.pdb Number of alignments=1979 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQING 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15863 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_44375274.pdb -s /var/tmp/to_scwrl_44375274.seq -o /var/tmp/from_scwrl_44375274.pdb > /var/tmp/scwrl_44375274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44375274.pdb Number of alignments=1980 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VS 3cp3A 34 :KD T0506 51 :YPYTTATNIGIE 3cp3A 36 :DLDIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 124 :AR 3cp3A 108 :DT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15873 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_630328633.pdb -s /var/tmp/to_scwrl_630328633.seq -o /var/tmp/from_scwrl_630328633.pdb > /var/tmp/scwrl_630328633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_630328633.pdb Number of alignments=1981 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 124 :AR 3cp3A 108 :DT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15883 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_157168007.pdb -s /var/tmp/to_scwrl_157168007.seq -o /var/tmp/from_scwrl_157168007.pdb > /var/tmp/scwrl_157168007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_157168007.pdb Number of alignments=1982 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 25 :EAVRVARDVLHTSRTAALATLD 3cp3A 12 :LDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 8 number of extra gaps= 2 total=15891 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_637967883.pdb -s /var/tmp/to_scwrl_637967883.seq -o /var/tmp/from_scwrl_637967883.pdb > /var/tmp/scwrl_637967883.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637967883.pdb Number of alignments=1983 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15900 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1328632583.pdb -s /var/tmp/to_scwrl_1328632583.seq -o /var/tmp/from_scwrl_1328632583.pdb > /var/tmp/scwrl_1328632583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328632583.pdb Number of alignments=1984 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 22 :APFEAVRVARDVLHTSRTAALATLD 3cp3A 9 :ITILDSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 76 :LHA 3cp3A 64 :KLF T0506 80 :NMETDARISVTL 3cp3A 67 :SVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLAIAR 3cp3A 102 :EEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQING 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15910 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_296782852.pdb -s /var/tmp/to_scwrl_296782852.seq -o /var/tmp/from_scwrl_296782852.pdb > /var/tmp/scwrl_296782852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_296782852.pdb Number of alignments=1985 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)K96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 18 :P 3cp3A 8 :P T0506 26 :AVRVARDVLHTSRTAALATLD 3cp3A 13 :DSSDSLSRLSSESVGRLVVHR T0506 48 :VSG 3cp3A 34 :KDD T0506 52 :PYTTATNIGIE 3cp3A 37 :LDIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 82 :ETDARISVTL 3cp3A 69 :NLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 132 :K 3cp3A 108 :D T0506 133 :AKLYLSLPDTRLYRLRTEGVQING 3cp3A 112 :LKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 2 total=15920 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1249977027.pdb -s /var/tmp/to_scwrl_1249977027.seq -o /var/tmp/from_scwrl_1249977027.pdb > /var/tmp/scwrl_1249977027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1249977027.pdb Number of alignments=1986 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 28 :RVARDVLHTSRTAALATLD 3cp3A 15 :SDSLSRLSSESVGRLVVHR T0506 48 :VSG 3cp3A 34 :KDD T0506 52 :PYTTATNIGIE 3cp3A 37 :LDIFPVNFVLD T0506 64 :DGT 3cp3A 51 :EQP T0506 67 :PFFFA 3cp3A 55 :VYFRT T0506 84 :DARISVTL 3cp3A 71 :NSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 132 :K 3cp3A 108 :D T0506 133 :AKLYLSLPDTRLYRLRTEGVQING 3cp3A 112 :LKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 10 number of extra gaps= 1 total=15930 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_339259660.pdb -s /var/tmp/to_scwrl_339259660.seq -o /var/tmp/from_scwrl_339259660.pdb > /var/tmp/scwrl_339259660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_339259660.pdb Number of alignments=1987 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 26 :AVRVARDVLHTSRTAALATLD 3cp3A 13 :DSSDSLSRLSSESVGRLVVHR T0506 48 :VSG 3cp3A 34 :KDD T0506 52 :PYTTATNIGIE 3cp3A 37 :LDIFPVNFVLD T0506 64 :DGTPFFFA 3cp3A 52 :QPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 124 :AR 3cp3A 108 :DT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 9 number of extra gaps= 2 total=15939 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_458731876.pdb -s /var/tmp/to_scwrl_458731876.seq -o /var/tmp/from_scwrl_458731876.pdb > /var/tmp/scwrl_458731876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_458731876.pdb Number of alignments=1988 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)G157 because last residue in template chain is (3cp3A)V137 T0506 26 :AVRVARDVLHTSRTAALATLD 3cp3A 13 :DSSDSLSRLSSESVGRLVVHR T0506 48 :VSGY 3cp3A 34 :KDDL T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 63 :PDGTPFFFA 3cp3A 51 :EQPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGP 3cp3A 86 :GWSVVLKGNAYVVRD T0506 117 :DEVPLA 3cp3A 102 :EEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQING 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVSGRA Number of specific fragments extracted= 8 number of extra gaps= 1 total=15947 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1084405407.pdb -s /var/tmp/to_scwrl_1084405407.seq -o /var/tmp/from_scwrl_1084405407.pdb > /var/tmp/scwrl_1084405407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084405407.pdb Number of alignments=1989 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)I16 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 17 :EPSAGAPFEAVRV 3cp3A 8 :PITILDSSDSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSGYPYTTATN 3cp3A 36 :DLDIFPVNFVLD T0506 61 :I 3cp3A 50 :A T0506 66 :TPFFFAAGL 3cp3A 51 :EQPRVYFRT T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAIAR 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 9 number of extra gaps= 2 total=15956 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1078879410.pdb -s /var/tmp/to_scwrl_1078879410.seq -o /var/tmp/from_scwrl_1078879410.pdb > /var/tmp/scwrl_1078879410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078879410.pdb Number of alignments=1990 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)T10 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 11 :PRGTKIEPSAGAPFEAVRVARDVLHTSR 3cp3A 8 :PITILDSSDSLSRLSSESVGRLVVHRKD T0506 47 :PVSGYPYTTATN 3cp3A 36 :DLDIFPVNFVLD T0506 61 :IEPDGTPFFF 3cp3A 50 :AEQPRVYFRT T0506 75 :TLHARNMETD 3cp3A 64 :KLFSVNLNSD T0506 90 :TLAPF 3cp3A 74 :VLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAIARY 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQ 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 8 number of extra gaps= 2 total=15964 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_930013894.pdb -s /var/tmp/to_scwrl_930013894.seq -o /var/tmp/from_scwrl_930013894.pdb > /var/tmp/scwrl_930013894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930013894.pdb Number of alignments=1991 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)T10 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 11 :PRGTKIEPSAGAP 3cp3A 8 :PITILDSSDSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSGYPYTTATN 3cp3A 36 :DLDIFPVNFVLD T0506 61 :IEPDGTPF 3cp3A 50 :AEQPRVYF T0506 73 :GL 3cp3A 58 :RT T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAIAR 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 9 number of extra gaps= 2 total=15973 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1409486013.pdb -s /var/tmp/to_scwrl_1409486013.seq -o /var/tmp/from_scwrl_1409486013.pdb > /var/tmp/scwrl_1409486013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1409486013.pdb Number of alignments=1992 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 18 :PSAGAPFEAV 3cp3A 8 :PITILDSSDS T0506 29 :VAR 3cp3A 18 :LSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSGYPYTTATN 3cp3A 36 :DLDIFPVNFVLD T0506 61 :I 3cp3A 50 :A T0506 65 :GTPFFFA 3cp3A 51 :EQPRVYF T0506 73 :GL 3cp3A 58 :RT T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARH T0506 128 :ARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 107 :ADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 11 number of extra gaps= 2 total=15984 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_628434521.pdb -s /var/tmp/to_scwrl_628434521.seq -o /var/tmp/from_scwrl_628434521.pdb > /var/tmp/scwrl_628434521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628434521.pdb Number of alignments=1993 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 18 :PSAGAPFEAV 3cp3A 8 :PITILDSSDS T0506 29 :VAR 3cp3A 18 :LSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSGYPYTTATN 3cp3A 36 :DLDIFPVNFVLD T0506 61 :I 3cp3A 50 :A T0506 65 :GT 3cp3A 51 :EQ T0506 85 :ARISVTL 3cp3A 53 :PRVYFRT T0506 96 :KG 3cp3A 64 :KL T0506 102 :LPRLTLVGRADRIGPDEVPLAIA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHAD T0506 130 :YPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 109 :TLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 11 number of extra gaps= 1 total=15995 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1996298903.pdb -s /var/tmp/to_scwrl_1996298903.seq -o /var/tmp/from_scwrl_1996298903.pdb > /var/tmp/scwrl_1996298903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1996298903.pdb Number of alignments=1994 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 18 :PSAGA 3cp3A 8 :PITIL T0506 24 :FEAVRVAR 3cp3A 13 :DSSDSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVS 3cp3A 36 :DLD T0506 54 :TTATNIGIE 3cp3A 39 :IFPVNFVLD T0506 64 :DG 3cp3A 50 :AE T0506 84 :DARISVTL 3cp3A 52 :QPRVYFRT T0506 96 :KG 3cp3A 64 :KL T0506 102 :LPRLTLVGRADRIGPDEVPLA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARH T0506 128 :ARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 107 :ADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 11 number of extra gaps= 1 total=16006 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1899452233.pdb -s /var/tmp/to_scwrl_1899452233.seq -o /var/tmp/from_scwrl_1899452233.pdb > /var/tmp/scwrl_1899452233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899452233.pdb Number of alignments=1995 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 18 :PSAGAPFE 3cp3A 8 :PITILDSS T0506 27 :VRVAR 3cp3A 16 :DSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSG 3cp3A 36 :DLDI T0506 55 :TATNIGIE 3cp3A 40 :FPVNFVLD T0506 65 :GTPFFFAAGL 3cp3A 50 :AEQPRVYFRT T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPL 3cp3A 86 :GWSVVLKGNAYVVRDTEEAR T0506 127 :IARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 106 :HADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 10 number of extra gaps= 2 total=16016 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_985637746.pdb -s /var/tmp/to_scwrl_985637746.seq -o /var/tmp/from_scwrl_985637746.pdb > /var/tmp/scwrl_985637746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_985637746.pdb Number of alignments=1996 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)I16 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 17 :EPSAGAPFEAVRV 3cp3A 8 :PITILDSSDSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSGYP 3cp3A 36 :DLDIFP T0506 57 :TNIGIE 3cp3A 42 :VNFVLD T0506 65 :GTPFFFAAGL 3cp3A 50 :AEQPRVYFRT T0506 79 :RNMETDAR 3cp3A 64 :KLFSVNLN T0506 102 :LPRLTLVGRADRIGPDEVPLAIARY 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQ 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 9 number of extra gaps= 1 total=16025 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1048245904.pdb -s /var/tmp/to_scwrl_1048245904.seq -o /var/tmp/from_scwrl_1048245904.pdb > /var/tmp/scwrl_1048245904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048245904.pdb Number of alignments=1997 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)I16 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 17 :EPSAGAPFEAVRV 3cp3A 8 :PITILDSSDSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 64 :DGTPFFFAA 3cp3A 51 :EQPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAI 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 8 number of extra gaps= 2 total=16033 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1943041740.pdb -s /var/tmp/to_scwrl_1943041740.seq -o /var/tmp/from_scwrl_1943041740.pdb > /var/tmp/scwrl_1943041740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943041740.pdb Number of alignments=1998 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 18 :PSAG 3cp3A 8 :PITI T0506 22 :APFEAVRV 3cp3A 13 :DSSDSLSR T0506 34 :LHTSRTAALATLDP 3cp3A 21 :LSSESVGRLVVHRK T0506 49 :S 3cp3A 35 :D T0506 53 :YTTATNIGIE 3cp3A 38 :DIFPVNFVLD T0506 64 :DGTPFFFAA 3cp3A 50 :AEQPRVYFR T0506 81 :METDARISVTL 3cp3A 68 :VNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPD 3cp3A 86 :GWSVVLKGNAYVVRDT T0506 118 :EVPLA 3cp3A 103 :EARHA T0506 132 :KAKLYLSLPDTRLYRLRTEGVQ 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 11 number of extra gaps= 2 total=16044 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_757986093.pdb -s /var/tmp/to_scwrl_757986093.seq -o /var/tmp/from_scwrl_757986093.pdb > /var/tmp/scwrl_757986093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_757986093.pdb Number of alignments=1999 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 18 :PSAGAPFEAV 3cp3A 8 :PITILDSSDS T0506 29 :VAR 3cp3A 18 :LSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 64 :DGTPFFFAA 3cp3A 51 :EQPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARH T0506 128 :ARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 107 :ADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 9 number of extra gaps= 2 total=16053 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_78585307.pdb -s /var/tmp/to_scwrl_78585307.seq -o /var/tmp/from_scwrl_78585307.pdb > /var/tmp/scwrl_78585307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78585307.pdb Number of alignments=2000 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)E17 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 18 :PSAGAPF 3cp3A 8 :PITILDS T0506 26 :AVRVAR 3cp3A 15 :SDSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSGYPYTTATN 3cp3A 36 :DLDIFPVNFVLD T0506 61 :I 3cp3A 50 :A T0506 63 :PDGTPFFFA 3cp3A 51 :EQPRVYFRT T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDE 3cp3A 86 :GWSVVLKGNAYVVRDTE T0506 124 :ARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 103 :EARHADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 10 number of extra gaps= 2 total=16063 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_289946231.pdb -s /var/tmp/to_scwrl_289946231.seq -o /var/tmp/from_scwrl_289946231.pdb > /var/tmp/scwrl_289946231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_289946231.pdb Number of alignments=2001 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAIAR 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADT T0506 131 :PKAKLYLSLPDTRLYRLRTEGV 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREV Number of specific fragments extracted= 3 number of extra gaps= 1 total=16066 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_642616974.pdb -s /var/tmp/to_scwrl_642616974.seq -o /var/tmp/from_scwrl_642616974.pdb > /var/tmp/scwrl_642616974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642616974.pdb Number of alignments=2002 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 90 :TLAPF 3cp3A 74 :VLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAIARY 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGV 3cp3A 111 :GLKPWLPTLKYNFVRIDVREV Number of specific fragments extracted= 3 number of extra gaps= 1 total=16069 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_161854987.pdb -s /var/tmp/to_scwrl_161854987.seq -o /var/tmp/from_scwrl_161854987.pdb > /var/tmp/scwrl_161854987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161854987.pdb Number of alignments=2003 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 89 :VTLAP 3cp3A 74 :VLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAIAR 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADT T0506 131 :PKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 110 :LGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 4 number of extra gaps= 1 total=16073 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_900750744.pdb -s /var/tmp/to_scwrl_900750744.seq -o /var/tmp/from_scwrl_900750744.pdb > /var/tmp/scwrl_900750744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900750744.pdb Number of alignments=2004 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 102 :LPRLTLVGRADRIGPDEVPLA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARH T0506 128 :ARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 107 :ADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 3 number of extra gaps= 0 total=16076 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1355409745.pdb -s /var/tmp/to_scwrl_1355409745.seq -o /var/tmp/from_scwrl_1355409745.pdb > /var/tmp/scwrl_1355409745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1355409745.pdb Number of alignments=2005 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 92 :APF 3cp3A 76 :FEV T0506 102 :LPRLTLVGRADRIGPDEVPLAIA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHAD T0506 130 :YPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 109 :TLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 4 number of extra gaps= 1 total=16080 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1500008707.pdb -s /var/tmp/to_scwrl_1500008707.seq -o /var/tmp/from_scwrl_1500008707.pdb > /var/tmp/scwrl_1500008707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500008707.pdb Number of alignments=2006 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVS 3cp3A 36 :DLD T0506 54 :TTATNIGIE 3cp3A 39 :IFPVNFVLD T0506 64 :DG 3cp3A 50 :AE T0506 84 :DARISVTL 3cp3A 52 :QPRVYFRT T0506 96 :KG 3cp3A 64 :KL T0506 102 :LPRLTLVGRADRIGPDEVPLA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARH T0506 128 :ARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 107 :ADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 9 number of extra gaps= 1 total=16089 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1245074680.pdb -s /var/tmp/to_scwrl_1245074680.seq -o /var/tmp/from_scwrl_1245074680.pdb > /var/tmp/scwrl_1245074680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1245074680.pdb Number of alignments=2007 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)T75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVS 3cp3A 36 :DLD T0506 54 :TTATNIGIE 3cp3A 39 :IFPVNFVLD T0506 65 :GTPFFFAAGL 3cp3A 50 :AEQPRVYFRT T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPL 3cp3A 86 :GWSVVLKGNAYVVRDTEEAR T0506 127 :IARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 106 :HADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 8 number of extra gaps= 2 total=16097 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2033502001.pdb -s /var/tmp/to_scwrl_2033502001.seq -o /var/tmp/from_scwrl_2033502001.pdb > /var/tmp/scwrl_2033502001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2033502001.pdb Number of alignments=2008 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)D98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 102 :LPRLTLVGRADRIGPDEVPLAIARY 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHADTL T0506 132 :KAKLYLSLPDTRLYRLRTEGVQ 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 3 number of extra gaps= 0 total=16100 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1801693526.pdb -s /var/tmp/to_scwrl_1801693526.seq -o /var/tmp/from_scwrl_1801693526.pdb > /var/tmp/scwrl_1801693526.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1801693526.pdb Number of alignments=2009 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)I16 because first residue in template chain is (3cp3A)D7 Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 17 :EPSAGAPFEAVRV 3cp3A 8 :PITILDSSDSLSR T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 64 :DGTPFFFAA 3cp3A 51 :EQPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLAI 3cp3A 86 :GWSVVLKGNAYVVRDTEEARHA T0506 129 :RYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 108 :DTLGLKPWLPTLKYNFVRIDVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=16107 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_958301387.pdb -s /var/tmp/to_scwrl_958301387.seq -o /var/tmp/from_scwrl_958301387.pdb > /var/tmp/scwrl_958301387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_958301387.pdb Number of alignments=2010 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 T0506 55 :TATNIGIE 3cp3A 40 :FPVNFVLD T0506 64 :DGTPFFFAA 3cp3A 50 :AEQPRVYFR T0506 81 :METDARISVTL 3cp3A 68 :VNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPD 3cp3A 86 :GWSVVLKGNAYVVRDT T0506 118 :EVPLA 3cp3A 103 :EARHA T0506 132 :KAKLYLSLPDTRLYRLRTEGVQI 3cp3A 111 :GLKPWLPTLKYNFVRIDVREVSG Number of specific fragments extracted= 6 number of extra gaps= 2 total=16113 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_2077877275.pdb -s /var/tmp/to_scwrl_2077877275.seq -o /var/tmp/from_scwrl_2077877275.pdb > /var/tmp/scwrl_2077877275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077877275.pdb Number of alignments=2011 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)L76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)A92 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)P93 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G95 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 49 :SGYPYTTATNIGIE 3cp3A 34 :KDDLDIFPVNFVLD T0506 64 :DGTPFFFAA 3cp3A 51 :EQPRVYFRT T0506 77 :HARNMETDARISVTL 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDEVPLA 3cp3A 86 :GWSVVLKGNAYVVRDTEEARH T0506 128 :ARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 107 :ADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 7 number of extra gaps= 2 total=16120 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_284538513.pdb -s /var/tmp/to_scwrl_284538513.seq -o /var/tmp/from_scwrl_284538513.pdb > /var/tmp/scwrl_284538513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_284538513.pdb Number of alignments=2012 # 3cp3A read from all-align.a2m # found chain 3cp3A in template set Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)S49 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)S49 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)T63 Warning: unaligning (T0506)A78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)T63 Warning: unaligning (T0506)F94 because of BadResidue code BAD_PEPTIDE in next template residue (3cp3A)R80 Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)R80 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (3cp3A)F81 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3cp3A)E85 Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3cp3A)E85 Warning: unaligning (T0506)S163 because last residue in template chain is (3cp3A)V137 T0506 34 :LHTSRTAALATLD 3cp3A 21 :LSSESVGRLVVHR T0506 47 :PVSGYPYTTATN 3cp3A 36 :DLDIFPVNFVLD T0506 61 :I 3cp3A 50 :A T0506 63 :PDGTPFFFA 3cp3A 51 :EQPRVYFRT T0506 79 :RNMETDARISVTLAP 3cp3A 64 :KLFSVNLNSDVLFEV T0506 102 :LPRLTLVGRADRIGPDE 3cp3A 86 :GWSVVLKGNAYVVRDTE T0506 124 :ARYIARYPKAKLYLSLPDTRLYRLRTEGVQ 3cp3A 103 :EARHADTLGLKPWLPTLKYNFVRIDVREVS T0506 159 :ARNA 3cp3A 133 :GRAF Number of specific fragments extracted= 8 number of extra gaps= 2 total=16128 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1115469393.pdb -s /var/tmp/to_scwrl_1115469393.seq -o /var/tmp/from_scwrl_1115469393.pdb > /var/tmp/scwrl_1115469393.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1115469393.pdb Number of alignments=2013 # command:# Prefix for input files set to # command:CPU_time= 245.202 sec, elapsed time= 2173.331 sec. # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 2013 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 2014: T0506.try1-al2+all-align.a2m:2arzA at pool[539] 213.194 cost/residue, 318 clashes 0.250 breaks # command:# naming current conformation T0506.try1-al3 # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 2013 alignments, # shrinking each end by up to 0.200*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 2014: T0506.try1-al3 213.194 cost/residue, 318 clashes 0.250 breaks # command:# naming current conformation T0506.try1-al4 # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 2013 alignments, # shrinking each end by up to 0.300*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 2014: T0506.try1-al4 213.194 cost/residue, 318 clashes 0.250 breaks # command:# naming current conformation T0506.try1-al5 # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 2013 alignments, # shrinking each end by up to 0.400*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 2014: T0506.try1-al5 213.194 cost/residue, 318 clashes 0.250 breaks # command:# naming current conformation T0506.try1-al6 # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 2013 alignments, # shrinking each end by up to 0.500*length and merging fragments shorter than 1 # Each alignment is added to result of previous insertion # best score in alignment pool out of 2014: T0506.try1-al6 213.194 cost/residue, 318 clashes 0.250 breaks # command:# naming current conformation T0506.try1-al7 # command: # TryAllAlign to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will try all 2013 alignments, # shrinking each end by up to 0.000*length and merging fragments shorter than 1 # Each alignment is added to initial conformation # best score in alignment pool out of 2014: T0506.try1-al7+all-align.a2m:2arzA at pool[972] 213.181 cost/residue, 318 clashes 0.250 breaks # command:# naming current conformation T0506.try1-al8 # command:# request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_320098392.pdb -s /var/tmp/to_scwrl_320098392.seq -o /var/tmp/from_scwrl_320098392.pdb > /var/tmp/scwrl_320098392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320098392.pdb # conformation set from SCWRL output # command:# naming current conformation T0506.try1 # command:# CostConform T0506.try1 costs 210.835 T0506.try1-al8 costs 213.181 T0506.try1-al7 costs 213.194 T0506.try1-al6 costs 213.194 T0506.try1-al5 costs 213.194 T0506.try1-al4 costs 213.194 T0506.try1-al3 costs 213.194 T0506.try1-al2 costs 218.462 T0506.try1-al1 costs 226.423 T0506 costs 924.483 # command:CPU_time= 1090.981 sec, elapsed time= 3021.638 sec. # command:# Prefix for input files set to # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0506.t2k.many.frag with CODEWEIGHT bystroff filtering # adding to alignment library if long or multiple fragments 1nw3A expands to /projects/compbio/data/pdb/1nw3.pdb.gz 1nw3A:# T0506 read from T0506.t2k.many.frag # 1nw3A.1.117 read from T0506.t2k.many.frag # adding 1nw3A to template set # found chain 1nw3A in template set T0506 1 :MLDVAPPVI 1nw3A 118 :SVTDPEKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16129 1wraA expands to /projects/compbio/data/pdb/1wra.pdb.gz 1wraA:Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2168, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2170, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2172, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2174, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2176, because occupancy 0.500 <= existing 0.500 in 1wraA Skipped atom 2178, because occupancy 0.500 <= existing 0.500 in 1wraA # 1wraA.1.39 read from T0506.t2k.many.frag # adding 1wraA to template set # found chain 1wraA in template set Warning: unaligning (T0506)M1 (1wraA)P66 because P (beta_P) conformation "forbidden" or filtered. T0506 2 :LDVAPPVI 1wraA 67 :DGSDSRYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=16130 1wolA expands to /projects/compbio/data/pdb/1wol.pdb.gz 1wolA:# 1wolA.1.80 read from T0506.t2k.many.frag # adding 1wolA to template set # found chain 1wolA in template set Warning: unaligning (T0506)M1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wolA)P82 Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wolA)P82 Warning: unaligning (T0506)V4 (1wolA)R84 because G (3-10) conformation "forbidden" or filtered. T0506 3 :D 1wolA 83 :S T0506 5 :APPVI 1wolA 85 :YPDVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=16132 1wpbA expands to /projects/compbio/data/pdb/1wpb.pdb.gz 1wpbA:Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 276, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 278, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 280, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1223, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1225, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1227, because occupancy 0.500 <= existing 0.500 in 1wpbA Skipped atom 1229, because occupancy 0.500 <= existing 0.500 in 1wpbA # 1wpbA.1.85 read from T0506.t2k.many.frag # adding 1wpbA to template set # found chain 1wpbA in template set Warning: unaligning (T0506)P6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wpbA)S90 Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 1 :MLDVA 1wpbA 84 :NLQDQ T0506 9 :I 1wpbA 92 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=16134 1t8tA expands to /projects/compbio/data/pdb/1t8t.pdb.gz 1t8tA:Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1394, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1396, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1398, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1400, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1402, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1404, because occupancy 0.500 <= existing 0.500 in 1t8tA Skipped atom 1406, because occupancy 0.500 <= existing 0.500 in 1t8tA # 1t8tA.1.218 read from T0506.t2k.many.frag # adding 1t8tA to template set # found chain 1t8tA in template set Warning: unaligning (T0506)P6 (1t8tA)S359 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVA 1t8tA 354 :KAEGS T0506 7 :PVI 1t8tA 360 :RPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16136 1odhA expands to /projects/compbio/data/pdb/1odh.pdb.gz 1odhA:# 1odhA.1.78 read from T0506.t2k.many.frag # adding 1odhA to template set # found chain 1odhA in template set Warning: unaligning (T0506)M1 (1odhA)V79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D3 (1odhA)V81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1odhA)R84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1odhA)D85 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :L 1odhA 80 :V T0506 4 :VA 1odhA 82 :CS T0506 8 :VI 1odhA 86 :CS Number of specific fragments extracted= 3 number of extra gaps= 3 total=16139 # 1n93X.1.32 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P6 (1n93X)F33 because E (beta_S) conformation "forbidden" or filtered. T0506 1 :MLDVA 1n93X 28 :KLPGK T0506 7 :PVI 1n93X 34 :LQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16141 # 1uxoA.1.97 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P6 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. T0506 1 :MLDVA 1uxoA 96 :VSGFA T0506 7 :PVI 1uxoA 102 :SLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16143 # 1dlwA.1.51 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)P6 (1dlwA)N57 because E (beta_S) conformation "forbidden" or filtered. T0506 1 :MLDVA 1dlwA 52 :ALGGP T0506 7 :PVI 1dlwA 58 :AWT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16145 1j0dA expands to /projects/compbio/data/pdb/1j0d.pdb.gz 1j0dA:# 1j0dA.1.250 read from T0506.t2k.many.frag # adding 1j0dA to template set # found chain 1j0dA in template set Warning: unaligning (T0506)P6 (1j0dA)K256 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1j0dA)D257 because Y (epsilon') conformation "forbidden" or filtered. T0506 1 :MLDVA 1j0dA 251 :VEHEF T0506 8 :VI 1j0dA 258 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16147 # 1oqjA.1.74 read from T0506.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0506)P6 (1oqjA)I165 because D (zeta) conformation "forbidden" or filtered. T0506 1 :MLDVA 1oqjA 160 :MDSGQ T0506 7 :PVI 1oqjA 166 :DFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16149 2fhpA expands to /projects/compbio/data/pdb/2fhp.pdb.gz 2fhpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 91, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 93, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 95, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 97, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 99, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 101, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 103, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 105, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 111, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 285, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 287, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 297, because occupancy 0.300 <= existing 0.300 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 410, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 412, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 414, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 416, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 418, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 501, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 503, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 509, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 513, because occupancy 0.350 <= existing 0.350 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 515, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1083, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1085, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1087, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1089, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1091, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1093, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1095, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1097, because occupancy 0.500 <= existing 0.500 in 2fhpA Skipped atom 1099, because occupancy 0.500 <= existing 0.500 in 2fhpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1178, because occupancy 0.400 <= existing 0.600 in 2fhpA Skipped atom 1180, because occupancy 0.400 <= existing 0.600 in 2fhpA Skipped atom 1182, because occupancy 0.400 <= existing 0.600 in 2fhpA Skipped atom 1184, because occupancy 0.400 <= existing 0.600 in 2fhpA Skipped atom 1186, because occupancy 0.400 <= existing 0.600 in 2fhpA Skipped atom 1188, because occupancy 0.400 <= existing 0.600 in 2fhpA Skipped atom 1190, because occupancy 0.400 <= existing 0.600 in 2fhpA Skipped atom 1192, because occupancy 0.400 <= existing 0.600 in 2fhpA # 2fhpA.1.5 read from T0506.t2k.many.frag # adding 2fhpA to template set # found chain 2fhpA in template set Warning: unaligning (T0506)D3 (2fhpA)S5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2fhpA)Y8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2fhpA)G10 because T (delta_L) conformation "forbidden" or filtered. T0506 1 :ML 2fhpA 3 :VI T0506 4 :VA 2fhpA 6 :GE T0506 7 :P 2fhpA 9 :G T0506 9 :I 2fhpA 11 :R Number of specific fragments extracted= 4 number of extra gaps= 3 total=16153 # 1o2dA.1.118 read from T0506.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)P7 (1o2dA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVAP 1o2dA 107 :VLLKEK T0506 8 :VI 1o2dA 114 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16155 # 1hbnB.1.58 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)M1 (1hbnB)A60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :LDVAP 1hbnB 61 :KVGGP T0506 8 :VI 1hbnB 67 :CK Number of specific fragments extracted= 2 number of extra gaps= 2 total=16157 1t77A expands to /projects/compbio/data/pdb/1t77.pdb.gz 1t77A:# 1t77A.1.302 read from T0506.t2k.many.frag # adding 1t77A to template set # found chain 1t77A in template set Warning: unaligning (T0506)P7 (1t77A)D2384 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1t77A)G2385 because T (delta_L) conformation "forbidden" or filtered. T0506 1 :MLDVAP 1t77A 2378 :NLGVMD T0506 9 :I 1t77A 2386 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=16159 2axtB expands to /projects/compbio/data/pdb/2axt.pdb.gz 2axtB:# 2axtB.1.70 read from T0506.t2k.many.frag # adding 2axtB to template set # found chain 2axtB in template set Warning: unaligning (T0506)D3 (2axtB)G73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2axtB)S76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2axtB)G77 because T (delta_L) conformation "forbidden" or filtered. T0506 1 :ML 2axtB 71 :VT T0506 4 :VA 2axtB 74 :SW T0506 8 :VI 2axtB 78 :WS Number of specific fragments extracted= 3 number of extra gaps= 2 total=16162 2yhx expands to /projects/compbio/data/pdb/2yhx.pdb.gz 2yhx:Warning: there is no chain 2yhx will retry with 2yhxA Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X # 2yhx.1.140 read from T0506.t2k.many.frag # adding 2yhx to template set # found chain 2yhx in template set Warning: unaligning (T0506)M1 (2yhx)A142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L2 because of BadResidue code BAD_PEPTIDE in next template residue (2yhx)E144 Warning: unaligning (T0506)D3 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)E144 Warning: unaligning (T0506)V4 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X145 Warning: unaligning (T0506)P6 (2yhx)I147 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2yhx)G149 because L (left) conformation "forbidden" or filtered. T0506 5 :A 2yhx 146 :V T0506 7 :P 2yhx 148 :K T0506 9 :I 2yhx 150 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=16165 2c5qA expands to /projects/compbio/data/pdb/2c5q.pdb.gz 2c5qA:# 2c5qA.1.77 read from T0506.t2k.many.frag # adding 2c5qA to template set # found chain 2c5qA in template set Warning: unaligning (T0506)P7 (2c5qA)L84 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVAP 2c5qA 78 :LALEPH T0506 8 :VI 2c5qA 85 :QS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16167 2a84A expands to /projects/compbio/data/pdb/2a84.pdb.gz 2a84A:Skipped atom 58, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 60, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 62, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 64, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 66, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 196, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 198, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1773, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1775, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1777, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1779, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1781, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1795, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1797, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1799, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1801, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1803, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1805, because occupancy 0.500 <= existing 0.500 in 2a84A Skipped atom 1807, because occupancy 0.500 <= existing 0.500 in 2a84A # 2a84A.1.109 read from T0506.t2k.many.frag # adding 2a84A to template set # found chain 2a84A in template set T0506 1 :MLDVAPPVI 2a84A 110 :YPDGLRTTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16168 2pspA expands to /projects/compbio/data/pdb/2psp.pdb.gz 2pspA:Bad short name: OE for alphabet: pdb_atoms # 2pspA.1.51 read from T0506.t2k.many.frag # adding 2pspA to template set # found chain 2pspA in template set Warning: unaligning (T0506)P7 (2pspA)C58 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVAP 2pspA 52 :AQESEE T0506 8 :VI 2pspA 59 :VM Number of specific fragments extracted= 2 number of extra gaps= 1 total=16170 # 1kqfA.1.852 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P6 (1kqfA)G858 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1kqfA)T859 because Y (epsilon') conformation "forbidden" or filtered. T0506 1 :MLDVA 1kqfA 853 :IETPL T0506 8 :VI 1kqfA 860 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16172 1z8kA expands to /projects/compbio/data/pdb/1z8k.pdb.gz 1z8kA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 231, because occupancy 0.330 <= existing 0.340 in 1z8kA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 234, because occupancy 0.330 <= existing 0.340 in 1z8kA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 237, because occupancy 0.330 <= existing 0.340 in 1z8kA Skipped atom 951, because occupancy 0.350 <= existing 0.650 in 1z8kA Skipped atom 953, because occupancy 0.350 <= existing 0.650 in 1z8kA Skipped atom 955, because occupancy 0.350 <= existing 0.650 in 1z8kA Skipped atom 957, because occupancy 0.350 <= existing 0.650 in 1z8kA # 1z8kA.1.26 read from T0506.t2k.many.frag # adding 1z8kA to template set # found chain 1z8kA in template set Warning: unaligning (T0506)P6 (1z8kA)L32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1z8kA)D33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1z8kA)H35 because L (left) conformation "forbidden" or filtered. T0506 1 :MLDVA 1z8kA 27 :YEINE T0506 8 :V 1z8kA 34 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=16174 1y0zA expands to /projects/compbio/data/pdb/1y0z.pdb.gz 1y0zA:# 1y0zA.1.181 read from T0506.t2k.many.frag # adding 1y0zA to template set # found chain 1y0zA in template set Warning: unaligning (T0506)P7 (1y0zA)S188 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVAP 1y0zA 182 :GEDDDP T0506 8 :VI 1y0zA 189 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16176 # 1kicA.1.220 read from T0506.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0506)P7 (1kicA)T215 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVAP 1kicA 209 :SLDSTN T0506 8 :VI 1kicA 216 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16178 1lg7A expands to /projects/compbio/data/pdb/1lg7.pdb.gz 1lg7A:Skipped atom 105, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 113, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 115, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 117, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 119, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 121, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 437, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 439, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 441, because occupancy 0.500 <= existing 0.500 in 1lg7A Bad short name: OD for alphabet: pdb_atoms Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 1133, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 1135, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 1310, because occupancy 0.500 <= existing 0.500 in 1lg7A Skipped atom 1312, because occupancy 0.500 <= existing 0.500 in 1lg7A # 1lg7A.1.128 read from T0506.t2k.many.frag # adding 1lg7A to template set # found chain 1lg7A in template set Warning: unaligning (T0506)P6 (1lg7A)E181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1lg7A)L183 because L (left) conformation "forbidden" or filtered. T0506 1 :MLDVA 1lg7A 176 :TIYDD T0506 7 :P 1lg7A 182 :S T0506 9 :I 1lg7A 184 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=16181 2b0aA expands to /projects/compbio/data/pdb/2b0a.pdb.gz 2b0aA:Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 113, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 115, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 117, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 119, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 121, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 123, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 125, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 171, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 817, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 819, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 821, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 823, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 825, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 829, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1149, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1153, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1155, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1361, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1365, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1367, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1369, because occupancy 0.500 <= existing 0.500 in 2b0aA Skipped atom 1371, because occupancy 0.500 <= existing 0.500 in 2b0aA # 2b0aA.1.89 read from T0506.t2k.many.frag # adding 2b0aA to template set # found chain 2b0aA in template set Warning: unaligning (T0506)M1 (2b0aA)Y90 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D3 (2b0aA)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2b0aA)Y96 because G (3-10) conformation "forbidden" or filtered. T0506 2 :L 2b0aA 91 :T T0506 4 :VAP 2b0aA 93 :FSK T0506 8 :VI 2b0aA 97 :WG Number of specific fragments extracted= 3 number of extra gaps= 3 total=16184 2cwcA expands to /projects/compbio/data/pdb/2cwc.pdb.gz 2cwcA:# 2cwcA.1.28 read from T0506.t2k.many.frag # adding 2cwcA to template set # found chain 2cwcA in template set Warning: unaligning (T0506)P6 (2cwcA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2cwcA)T35 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVA 2cwcA 29 :EGLPK T0506 8 :VI 2cwcA 36 :FP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16186 # 1y0zA.1.255 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)A5 (1y0zA)D260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1y0zA)R262 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDV 1y0zA 256 :TGWE T0506 6 :P 1y0zA 261 :K T0506 8 :VI 1y0zA 263 :ND Number of specific fragments extracted= 3 number of extra gaps= 2 total=16189 # 1ltzA.1.14 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)A5 (1ltzA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1ltzA)L20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1ltzA)S21 because E (beta_S) conformation "forbidden" or filtered. T0506 1 :MLDV 1ltzA 15 :RKNV T0506 8 :VI 1ltzA 22 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16191 1d9uA expands to /projects/compbio/data/pdb/1d9u.pdb.gz 1d9uA:# 1d9uA.1.116 read from T0506.t2k.many.frag # adding 1d9uA to template set # found chain 1d9uA in template set Warning: unaligning (T0506)V4 (1d9uA)C120 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLD 1d9uA 117 :IDR T0506 5 :APPVI 1d9uA 121 :SNIWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16193 # 1wraA.2.40 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)D3 (1wraA)G68 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :L 1wraA 67 :D T0506 4 :VAPPVIT 1wraA 69 :SDSRYPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=16195 # 1wolA.2.81 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)L2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wolA)P82 Warning: unaligning (T0506)P6 (1wolA)P86 because C (cis) conformation "forbidden" or filtered. T0506 3 :DVA 1wolA 83 :SRY T0506 7 :PVIT 1wolA 87 :DVYY Number of specific fragments extracted= 2 number of extra gaps= 2 total=16197 # 1nw3A.2.118 read from T0506.t2k.many.frag # found chain 1nw3A in template set T0506 2 :LDVAPPVIT 1nw3A 119 :VTDPEKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=16198 # 1t8tA.2.219 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)P6 (1t8tA)S359 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVA 1t8tA 355 :AEGS T0506 7 :PVIT 1t8tA 360 :RPHC Number of specific fragments extracted= 2 number of extra gaps= 1 total=16200 # 1wpbA.2.86 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)V4 (1wpbA)D87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wpbA)S90 Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 2 :LD 1wpbA 85 :LQ T0506 5 :A 1wpbA 88 :Q T0506 9 :IT 1wpbA 92 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=16203 # 1odhA.2.79 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)D3 (1odhA)V81 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1odhA)R84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1odhA)D85 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :L 1odhA 80 :V T0506 4 :VA 1odhA 82 :CS T0506 8 :VIT 1odhA 86 :CST Number of specific fragments extracted= 3 number of extra gaps= 2 total=16206 # 1n93X.2.33 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P6 (1n93X)F33 because E (beta_S) conformation "forbidden" or filtered. T0506 2 :LDVA 1n93X 29 :LPGK T0506 7 :PVIT 1n93X 34 :LQYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16208 # 1uxoA.2.98 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)L2 (1uxoA)S97 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. T0506 3 :DVA 1uxoA 98 :GFA T0506 7 :PVIT 1uxoA 102 :SLPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=16210 # 1o2dA.2.119 read from T0506.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)P7 (1o2dA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVAP 1o2dA 108 :LLKEK T0506 8 :VIT 1o2dA 114 :LSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16212 # 1kicA.2.221 read from T0506.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0506)P7 (1kicA)T215 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVAP 1kicA 210 :LDSTN T0506 8 :VIT 1kicA 216 :VPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16214 2f60K expands to /projects/compbio/data/pdb/2f60.pdb.gz 2f60K:Skipped atom 130, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 132, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 134, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 136, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 138, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 140, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 142, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 144, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 146, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 148, because occupancy 0.480 <= existing 0.520 in 2f60K Skipped atom 150, because occupancy 0.480 <= existing 0.520 in 2f60K # 2f60K.2.18 read from T0506.t2k.many.frag # adding 2f60K to template set # found chain 2f60K in template set Warning: unaligning (T0506)P6 (2f60K)H142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2f60K)S143 because L (left) conformation "forbidden" or filtered. T0506 2 :LDVA 2f60K 138 :ILEK T0506 8 :VIT 2f60K 144 :LDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16216 # 1hbnB.2.59 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)A5 (1hbnB)G64 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 (1hbnB)I69 because D (zeta) conformation "forbidden" or filtered. T0506 2 :LDV 1hbnB 61 :KVG T0506 6 :P 1hbnB 65 :P T0506 8 :VI 1hbnB 67 :CK Number of specific fragments extracted= 3 number of extra gaps= 3 total=16219 # 1j0dA.2.251 read from T0506.t2k.many.frag # found chain 1j0dA in template set Warning: unaligning (T0506)P6 (1j0dA)K256 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1j0dA)D257 because Y (epsilon') conformation "forbidden" or filtered. T0506 2 :LDVA 1j0dA 252 :EHEF T0506 8 :VIT 1j0dA 258 :FTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16221 # 1dlwA.2.52 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)D3 (1dlwA)G54 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1dlwA)N57 because E (beta_S) conformation "forbidden" or filtered. T0506 2 :L 1dlwA 53 :L T0506 4 :VA 1dlwA 55 :GP T0506 7 :PVIT 1dlwA 58 :AWTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=16224 # 1t77A.2.303 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)L2 (1t77A)L2379 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1t77A)D2384 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1t77A)G2385 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVAP 1t77A 2380 :GVMD T0506 9 :IT 1t77A 2386 :TV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16226 # 2yhx.2.141 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)L2 because of BadResidue code BAD_PEPTIDE in next template residue (2yhx)E144 Warning: unaligning (T0506)D3 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)E144 Warning: unaligning (T0506)V4 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X145 Warning: unaligning (T0506)P6 (2yhx)I147 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2yhx)G149 because L (left) conformation "forbidden" or filtered. T0506 5 :A 2yhx 146 :V T0506 7 :P 2yhx 148 :K T0506 9 :IT 2yhx 150 :QI Number of specific fragments extracted= 3 number of extra gaps= 3 total=16229 # 1oqjA.2.75 read from T0506.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0506)V4 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1oqjA)I165 because D (zeta) conformation "forbidden" or filtered. T0506 2 :LD 1oqjA 161 :DS T0506 5 :A 1oqjA 164 :Q T0506 7 :PVIT 1oqjA 166 :DFYQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=16232 # 1ltzA.2.15 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)A5 (1ltzA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1ltzA)L20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1ltzA)S21 because E (beta_S) conformation "forbidden" or filtered. T0506 2 :LDV 1ltzA 16 :KNV T0506 8 :VIT 1ltzA 22 :HDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16234 # 1kqfA.2.853 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P6 (1kqfA)G858 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1kqfA)T859 because Y (epsilon') conformation "forbidden" or filtered. T0506 2 :LDVA 1kqfA 854 :ETPL T0506 8 :VIT 1kqfA 860 :NPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16236 # 2pspA.2.52 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)P7 (2pspA)C58 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVAP 2pspA 53 :QESEE T0506 8 :VIT 2pspA 59 :VMQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16238 # 2fhpA.2.6 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)V4 (2fhpA)G6 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2fhpA)Y8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2fhpA)G10 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :LD 2fhpA 4 :IS T0506 5 :A 2fhpA 7 :E T0506 7 :P 2fhpA 9 :G T0506 9 :IT 2fhpA 11 :RR Number of specific fragments extracted= 4 number of extra gaps= 3 total=16242 # 2axtB.2.71 read from T0506.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0506)D3 (2axtB)G73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2axtB)S76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2axtB)G77 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :L 2axtB 72 :T T0506 4 :VA 2axtB 74 :SW T0506 8 :VIT 2axtB 78 :WSI Number of specific fragments extracted= 3 number of extra gaps= 2 total=16245 # 2a84A.2.110 read from T0506.t2k.many.frag # found chain 2a84A in template set T0506 2 :LDVAPPVIT 2a84A 111 :PDGLRTTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16246 # 2cwcA.2.29 read from T0506.t2k.many.frag # found chain 2cwcA in template set Warning: unaligning (T0506)L2 (2cwcA)G30 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2cwcA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2cwcA)T35 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVA 2cwcA 31 :LPK T0506 8 :VIT 2cwcA 36 :FPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16248 # 2c5qA.2.78 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)P7 (2c5qA)L84 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVAP 2c5qA 79 :ALEPH T0506 8 :VIT 2c5qA 85 :QSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16250 # 1vr9A.2.61 read from T0506.t2k.many.frag # found chain 1vr9A in training set Warning: unaligning (T0506)A5 (1vr9A)L53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1vr9A)D55 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDV 1vr9A 50 :KED T0506 6 :P 1vr9A 54 :L T0506 8 :VIT 1vr9A 56 :LDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=16253 # 1z8kA.2.27 read from T0506.t2k.many.frag # found chain 1z8kA in template set Warning: unaligning (T0506)P6 (1z8kA)L32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1z8kA)D33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1z8kA)R34 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVA 1z8kA 28 :EINE T0506 9 :IT 1z8kA 35 :HS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16255 # 1y0zA.2.256 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P7 (1y0zA)R262 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVAP 1y0zA 257 :GWEDK T0506 8 :VIT 1y0zA 263 :NDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16257 # 1y0zA.2.182 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P7 (1y0zA)S188 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVAP 1y0zA 183 :EDDDP T0506 8 :VIT 1y0zA 189 :SPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16259 1h6kA expands to /projects/compbio/data/pdb/1h6k.pdb.gz 1h6kA:# 1h6kA.2.401 read from T0506.t2k.many.frag # adding 1h6kA to template set # found chain 1h6kA in template set Warning: unaligning (T0506)P6 (1h6kA)Q425 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1h6kA)F426 because L (left) conformation "forbidden" or filtered. T0506 2 :LDVA 1h6kA 421 :LSNF T0506 8 :VIT 1h6kA 427 :RWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16261 # 1wraA.3.41 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 T0506 3 :DVAPPVIT 1wraA 68 :GSDSRYPW Number of specific fragments extracted= 1 number of extra gaps= 1 total=16262 # 1t8tA.3.220 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)P6 (1t8tA)S359 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVA 1t8tA 356 :EGS T0506 7 :PVITP 1t8tA 360 :RPHCL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16264 # 1wolA.3.82 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)P6 (1wolA)P86 because C (cis) conformation "forbidden" or filtered. T0506 3 :DVA 1wolA 83 :SRY T0506 7 :PVITP 1wolA 87 :DVYYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16266 # 1uxoA.3.99 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P6 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 (1uxoA)T105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. T0506 3 :DVA 1uxoA 98 :GFA T0506 7 :PVI 1uxoA 102 :SLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=16268 # 1nw3A.3.119 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :DVAPPVIT 1nw3A 120 :TDPEKLNN Number of specific fragments extracted= 1 number of extra gaps= 1 total=16269 # 1wpbA.3.87 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)V4 (1wpbA)D87 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wpbA)S90 Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 3 :D 1wpbA 86 :Q T0506 5 :A 1wpbA 88 :Q T0506 9 :ITP 1wpbA 92 :DER Number of specific fragments extracted= 3 number of extra gaps= 2 total=16272 # 2f60K.3.19 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)P6 (2f60K)H142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2f60K)S143 because L (left) conformation "forbidden" or filtered. T0506 3 :DVA 2f60K 139 :LEK T0506 8 :VITP 2f60K 144 :LDAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16274 # 1kicA.3.222 read from T0506.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0506)P7 (1kicA)T215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kicA)R219 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :DVAP 1kicA 211 :DSTN T0506 8 :VIT 1kicA 216 :VPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16276 # 1n93X.3.34 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)V4 (1n93X)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1n93X)F33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :D 1n93X 30 :P T0506 5 :A 1n93X 32 :K T0506 7 :PVIT 1n93X 34 :LQYT Number of specific fragments extracted= 3 number of extra gaps= 3 total=16279 # 1odhA.3.80 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)P6 (1odhA)R84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1odhA)D85 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVA 1odhA 81 :VCS T0506 8 :VITP 1odhA 86 :CSTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16281 # 1hbnB.3.60 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)V4 (1hbnB)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A5 (1hbnB)G64 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :D 1hbnB 62 :V T0506 6 :P 1hbnB 65 :P T0506 8 :VITP 1hbnB 67 :CKIM Number of specific fragments extracted= 3 number of extra gaps= 2 total=16284 # 1o2dA.3.120 read from T0506.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)P7 (1o2dA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVAP 1o2dA 109 :LKEK T0506 8 :VITP 1o2dA 114 :LSVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16286 # 1t77A.3.304 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)A5 (1t77A)M2382 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1t77A)D2384 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1t77A)G2385 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DV 1t77A 2380 :GV T0506 6 :P 1t77A 2383 :D T0506 9 :ITP 1t77A 2386 :TVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=16289 # 1kqfA.3.854 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P6 (1kqfA)G858 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1kqfA)T859 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 3 :DVA 1kqfA 855 :TPL T0506 8 :VIT 1kqfA 860 :NPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16291 # 2yhx.3.142 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)D3 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)E144 Warning: unaligning (T0506)V4 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X145 Warning: unaligning (T0506)P6 (2yhx)I147 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 2yhx 146 :V T0506 7 :PVITP 2yhx 148 :KGQIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=16293 # 2cwcA.3.30 read from T0506.t2k.many.frag # found chain 2cwcA in template set Warning: unaligning (T0506)D3 (2cwcA)L31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2cwcA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2cwcA)T35 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VA 2cwcA 32 :PK T0506 8 :VITP 2cwcA 36 :FPEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16295 # 2fhpA.3.7 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)D3 (2fhpA)S5 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V4 (2fhpA)G6 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2fhpA)Y8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2fhpA)G10 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. T0506 5 :A 2fhpA 7 :E T0506 7 :P 2fhpA 9 :G T0506 9 :IT 2fhpA 11 :RR Number of specific fragments extracted= 3 number of extra gaps= 4 total=16298 # 2pspA.3.53 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)P7 (2pspA)C58 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVAP 2pspA 54 :ESEE T0506 8 :VITP 2pspA 59 :VMQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16300 # 1a6m.3.37 read from T0506.t2k.many.frag # found chain 1a6m in training set Warning: unaligning (T0506)P11 (1a6m)F46 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVAPPVIT 1a6m 38 :ETLEKFDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16301 1w33A expands to /projects/compbio/data/pdb/1w33.pdb.gz 1w33A:Skipped atom 676, because occupancy 0.350 <= existing 0.650 in 1w33A Skipped atom 678, because occupancy 0.350 <= existing 0.650 in 1w33A Skipped atom 680, because occupancy 0.350 <= existing 0.650 in 1w33A Skipped atom 682, because occupancy 0.350 <= existing 0.650 in 1w33A # 1w33A.3.27 read from T0506.t2k.many.frag # adding 1w33A to template set # found chain 1w33A in template set Warning: unaligning (T0506)P6 (1w33A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w33A)K101 because L (left) conformation "forbidden" or filtered. T0506 3 :DVA 1w33A 97 :IAK T0506 8 :VITP 1w33A 102 :FDFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16303 # 1dlwA.3.53 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)P6 (1dlwA)N57 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :DVA 1dlwA 54 :GGP T0506 7 :PVITP 1dlwA 58 :AWTGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16305 # 1j0dA.3.252 read from T0506.t2k.many.frag # found chain 1j0dA in template set Warning: unaligning (T0506)P6 (1j0dA)K256 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1j0dA)D257 because Y (epsilon') conformation "forbidden" or filtered. T0506 3 :DVA 1j0dA 253 :HEF T0506 8 :VITP 1j0dA 258 :FTLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16307 # 1ltzA.3.16 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)P6 (1ltzA)L20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1ltzA)S21 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :DVA 1ltzA 17 :NVG T0506 8 :VITP 1ltzA 22 :HDAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16309 # 2axtB.3.72 read from T0506.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0506)D3 (2axtB)G73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2axtB)S76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2axtB)G77 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2axtB)T81 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VA 2axtB 74 :SW T0506 8 :VIT 2axtB 78 :WSI Number of specific fragments extracted= 2 number of extra gaps= 3 total=16311 # 2c5qA.3.79 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)P7 (2c5qA)L84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2c5qA)F88 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :DVAP 2c5qA 80 :LEPH T0506 8 :VIT 2c5qA 85 :QSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=16313 # 2a84A.3.111 read from T0506.t2k.many.frag # found chain 2a84A in template set T0506 3 :DVAPPVITP 2a84A 112 :DGLRTTVQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16314 2bg5A expands to /projects/compbio/data/pdb/2bg5.pdb.gz 2bg5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bg5A.3.208 read from T0506.t2k.many.frag # adding 2bg5A to template set # found chain 2bg5A in template set Warning: unaligning (T0506)P6 (2bg5A)L461 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2bg5A)A462 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2bg5A)M466 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVA 2bg5A 458 :QYT T0506 8 :VIT 2bg5A 463 :VDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16316 # 1vr9A.3.62 read from T0506.t2k.many.frag # found chain 1vr9A in training set Warning: unaligning (T0506)P7 (1vr9A)D55 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVAP 1vr9A 51 :EDLL T0506 8 :VITP 1vr9A 56 :LDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16318 # 1y0zA.3.257 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)D3 (1y0zA)W258 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1y0zA)R262 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VAP 1y0zA 259 :EDK T0506 8 :VITP 1y0zA 263 :NDPR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16320 # 1oqjA.3.76 read from T0506.t2k.many.frag # found chain 1oqjA in training set Warning: unaligning (T0506)V4 (1oqjA)G163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1oqjA)I165 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 (1oqjA)Q169 because L (left) conformation "forbidden" or filtered. T0506 3 :D 1oqjA 162 :S T0506 5 :A 1oqjA 164 :Q T0506 7 :PVI 1oqjA 166 :DFY T0506 11 :P 1oqjA 170 :H Number of specific fragments extracted= 4 number of extra gaps= 3 total=16324 # 1wraA.4.42 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 T0506 4 :VAPPVIT 1wraA 69 :SDSRYPW Number of specific fragments extracted= 1 number of extra gaps= 1 total=16325 # 1t8tA.4.221 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)A5 (1t8tA)S358 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1t8tA)S359 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1t8tA)G365 because P (beta_P) conformation "forbidden" or filtered. T0506 4 :V 1t8tA 357 :G T0506 7 :PVITP 1t8tA 360 :RPHCL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16327 # 1wolA.4.83 read from T0506.t2k.many.frag # found chain 1wolA in template set T0506 4 :VAPPVITPR 1wolA 84 :RYPDVYYEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16328 # 1uxoA.4.100 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P6 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. T0506 4 :VA 1uxoA 99 :FA T0506 7 :PVIT 1uxoA 102 :SLPT T0506 12 :R 1uxoA 107 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=16331 # 2f60K.4.20 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)P6 (2f60K)H142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2f60K)S143 because L (left) conformation "forbidden" or filtered. T0506 4 :VA 2f60K 140 :EK T0506 8 :VITPR 2f60K 144 :LDASQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16333 # 1nw3A.4.120 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VAPPVIT 1nw3A 121 :DPEKLNN T0506 12 :R 1nw3A 129 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=16335 # 1wpbA.4.88 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wpbA)S90 Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 4 :VA 1wpbA 87 :DQ T0506 9 :ITPR 1wpbA 92 :DERR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16337 # 1n93X.4.35 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P6 (1n93X)F33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1n93X)G39 because S (epsilon) conformation "forbidden" or filtered. T0506 4 :VA 1n93X 31 :GK T0506 7 :PVIT 1n93X 34 :LQYT Number of specific fragments extracted= 2 number of extra gaps= 2 total=16339 # 1hbnB.4.61 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)V4 (1hbnB)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1hbnB)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 5 :AP 1hbnB 64 :GP T0506 8 :VITP 1hbnB 67 :CKIM Number of specific fragments extracted= 2 number of extra gaps= 3 total=16341 # 1kicA.4.223 read from T0506.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0506)P7 (1kicA)T215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kicA)R219 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VAP 1kicA 212 :STN T0506 8 :VIT 1kicA 216 :VPV T0506 12 :R 1kicA 220 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=16344 # 1t77A.4.305 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P7 (1t77A)D2384 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VAP 1t77A 2381 :VMD T0506 8 :VITPR 1t77A 2385 :GTVVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16346 # 1kqfA.4.855 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P6 (1kqfA)G858 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1kqfA)T859 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 4 :VA 1kqfA 856 :PL T0506 8 :VIT 1kqfA 860 :NPL T0506 12 :R 1kqfA 864 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=16349 # 1odhA.4.81 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)P6 (1odhA)R84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1odhA)D85 because T (delta_L) conformation "forbidden" or filtered. T0506 4 :VA 1odhA 82 :CS T0506 8 :VITPR 1odhA 86 :CSTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16351 # 1o2dA.4.121 read from T0506.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)P7 (1o2dA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VAP 1o2dA 110 :KEK T0506 8 :VITPR 1o2dA 114 :LSVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=16353 # 1w33A.4.28 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P6 (1w33A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w33A)K101 because L (left) conformation "forbidden" or filtered. T0506 4 :VA 1w33A 98 :AK T0506 8 :VITPR 1w33A 102 :FDFLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16355 # 2yhx.4.143 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)V4 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X145 Warning: unaligning (T0506)P6 (2yhx)I147 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2yhx)G149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X153 T0506 5 :A 2yhx 146 :V T0506 7 :P 2yhx 148 :K T0506 9 :ITP 2yhx 150 :QIT Number of specific fragments extracted= 3 number of extra gaps= 4 total=16358 # 2fhpA.4.8 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P6 (2fhpA)Y8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2fhpA)G10 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (2fhpA)K14 because P (beta_P) conformation "forbidden" or filtered. T0506 4 :VA 2fhpA 6 :GE T0506 7 :P 2fhpA 9 :G T0506 9 :IT 2fhpA 11 :RR Number of specific fragments extracted= 3 number of extra gaps= 3 total=16361 # 2pspA.4.54 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)P7 (2pspA)C58 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VAP 2pspA 55 :SEE T0506 8 :VITPR 2pspA 59 :VMQVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16363 # 2cwcA.4.31 read from T0506.t2k.many.frag # found chain 2cwcA in template set Warning: unaligning (T0506)P6 (2cwcA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2cwcA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (2cwcA)R40 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VA 2cwcA 32 :PK T0506 8 :VITP 2cwcA 36 :FPEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16365 # 2bg5A.4.209 read from T0506.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0506)P6 (2bg5A)L461 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2bg5A)A462 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2bg5A)M466 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (2bg5A)N467 because P (beta_P) conformation "forbidden" or filtered. T0506 4 :VA 2bg5A 459 :YT T0506 8 :VIT 2bg5A 463 :VDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16367 # 1jidA.4.22 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P6 (1jidA)N25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1jidA)K26 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VA 1jidA 23 :LN T0506 8 :VITPR 1jidA 27 :KTIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16369 # 1ltzA.4.17 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)A5 (1ltzA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1ltzA)L20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1ltzA)S21 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :V 1ltzA 18 :V T0506 8 :VITPR 1ltzA 22 :HDAND Number of specific fragments extracted= 2 number of extra gaps= 1 total=16371 # 2c5qA.4.80 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)P7 (2c5qA)L84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2c5qA)F88 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VAP 2c5qA 81 :EPH T0506 8 :VIT 2c5qA 85 :QSQ T0506 12 :R 2c5qA 89 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=16374 # 1a6m.4.38 read from T0506.t2k.many.frag # found chain 1a6m in training set Warning: unaligning (T0506)P11 (1a6m)F46 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VAPPVIT 1a6m 39 :TLEKFDR T0506 12 :R 1a6m 47 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16376 # 1y0zA.4.258 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P7 (1y0zA)R262 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VAP 1y0zA 259 :EDK T0506 8 :VITPR 1y0zA 263 :NDPRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16378 # 1dlwA.4.54 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)P6 (1dlwA)N57 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VA 1dlwA 55 :GP T0506 7 :PVITPR 1dlwA 58 :AWTGRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16380 # 1d9uA.4.119 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)R12 (1d9uA)P128 because P (beta_P) conformation "forbidden" or filtered. T0506 4 :VAPPVITP 1d9uA 120 :CSNIWASL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16381 # 2dpmA.4.135 read from T0506.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)P6 (2dpmA)K138 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2dpmA)N139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2dpmA)V143 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VA 2dpmA 136 :NS T0506 8 :VIT 2dpmA 140 :QFN T0506 12 :R 2dpmA 144 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=16384 2a6hE expands to /projects/compbio/data/pdb/2a6h.pdb.gz 2a6hE:# 2a6hE.4.40 read from T0506.t2k.many.frag # adding 2a6hE to template set # found chain 2a6hE in template set Warning: unaligning (T0506)P7 (2a6hE)E44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2a6hE)M48 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VAP 2a6hE 41 :EPE T0506 8 :VIT 2a6hE 45 :RPK T0506 12 :R 2a6hE 49 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=16387 1xw8A expands to /projects/compbio/data/pdb/1xw8.pdb.gz 1xw8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xw8A.4.164 read from T0506.t2k.many.frag # adding 1xw8A to template set # found chain 1xw8A in template set Warning: unaligning (T0506)A5 (1xw8A)Q166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1xw8A)G169 because T (delta_L) conformation "forbidden" or filtered. T0506 4 :V 1xw8A 165 :Y T0506 6 :PP 1xw8A 167 :AD T0506 9 :ITPR 1xw8A 170 :SLVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=16390 # 1wraA.5.43 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 T0506 5 :APPVIT 1wraA 70 :DSRYPW T0506 13 :G 1wraA 78 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=16392 # 1t8tA.5.222 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)P6 (1t8tA)S359 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1t8tA 358 :S T0506 7 :PVITPRG 1t8tA 360 :RPHCLGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16394 # 2f60K.5.21 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)P6 (2f60K)H142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2f60K)S143 because L (left) conformation "forbidden" or filtered. T0506 5 :A 2f60K 141 :K T0506 8 :VITPRG 2f60K 144 :LDASQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16396 # 1uxoA.5.101 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P6 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. T0506 5 :A 1uxoA 100 :A T0506 7 :PVIT 1uxoA 102 :SLPT T0506 12 :RG 1uxoA 107 :QM Number of specific fragments extracted= 3 number of extra gaps= 2 total=16399 # 1wolA.5.84 read from T0506.t2k.many.frag # found chain 1wolA in template set T0506 5 :APPVITPRG 1wolA 85 :YPDVYYEGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=16400 # 1n93X.5.36 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P6 (1n93X)F33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. T0506 5 :A 1n93X 32 :K T0506 7 :PVIT 1n93X 34 :LQYT T0506 12 :RG 1n93X 39 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=16403 # 1nw3A.5.121 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)I9 (1nw3A)N126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1nw3A)P130 because P (beta_P) conformation "forbidden" or filtered. T0506 5 :APPV 1nw3A 122 :PEKL T0506 10 :T 1nw3A 127 :N T0506 12 :R 1nw3A 129 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=16406 # 1wpbA.5.89 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wpbA)S90 Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 5 :A 1wpbA 88 :Q T0506 9 :ITPRG 1wpbA 92 :DERRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16408 # 1t77A.5.306 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P7 (1t77A)D2384 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1t77A)G2385 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1t77A)S2389 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1t77A)D2390 because P (beta_P) conformation "forbidden" or filtered. T0506 5 :AP 1t77A 2382 :MD T0506 9 :ITP 1t77A 2386 :TVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16410 # 1kqfA.5.856 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P6 (1kqfA)G858 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1kqfA)T859 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 5 :A 1kqfA 857 :L T0506 8 :VIT 1kqfA 860 :NPL T0506 12 :RG 1kqfA 864 :PN Number of specific fragments extracted= 3 number of extra gaps= 2 total=16413 # 1hbnB.5.62 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)A5 (1hbnB)G64 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1hbnB)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 6 :P 1hbnB 65 :P T0506 8 :VITP 1hbnB 67 :CKIM T0506 13 :G 1hbnB 72 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=16416 # 1w33A.5.29 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P6 (1w33A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w33A)K101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1w33A)F102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1w33A)T107 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1w33A 99 :K T0506 9 :ITPR 1w33A 103 :DFLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=16418 # 2fhpA.5.9 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P6 (2fhpA)Y8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (2fhpA)A15 because P (beta_P) conformation "forbidden" or filtered. T0506 5 :A 2fhpA 7 :E T0506 7 :PVIT 2fhpA 9 :GGRR T0506 12 :R 2fhpA 14 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=16421 # 2yhx.5.144 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)P6 (2yhx)I147 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2yhx)G149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X153 Warning: unaligning (T0506)G13 (2yhx)Q154 because P (beta_P) conformation "forbidden" or filtered. T0506 5 :A 2yhx 146 :V T0506 7 :P 2yhx 148 :K T0506 9 :ITP 2yhx 150 :QIT Number of specific fragments extracted= 3 number of extra gaps= 3 total=16424 # 2pspA.5.55 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)P7 (2pspA)C58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (2pspA)M60 because Y (epsilon') conformation "forbidden" or filtered. T0506 5 :AP 2pspA 56 :EE T0506 8 :V 2pspA 59 :V T0506 10 :TPRG 2pspA 61 :QVSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=16427 # 1o2dA.5.122 read from T0506.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)P7 (1o2dA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 5 :AP 1o2dA 111 :EK T0506 8 :VITPRG 1o2dA 114 :LSVEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16429 # 1jidA.5.23 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P6 (1jidA)N25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1jidA)K26 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1jidA 24 :N T0506 8 :VITPRG 1jidA 27 :KTIAEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16431 # 1ltzA.5.18 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)P6 (1ltzA)L20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1ltzA)S21 because E (beta_S) conformation "forbidden" or filtered. T0506 5 :A 1ltzA 19 :G T0506 8 :VITPRG 1ltzA 22 :HDANDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16433 # 1odhA.5.82 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)P6 (1odhA)R84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1odhA)D85 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1odhA)E90 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1odhA 83 :S T0506 8 :VITP 1odhA 86 :CSTE T0506 13 :G 1odhA 91 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=16436 # 1kicA.5.224 read from T0506.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0506)P7 (1kicA)T215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kicA)R219 because E (beta_S) conformation "forbidden" or filtered. T0506 5 :AP 1kicA 213 :TN T0506 8 :VIT 1kicA 216 :VPV T0506 12 :RG 1kicA 220 :SP Number of specific fragments extracted= 3 number of extra gaps= 2 total=16439 # 1xw8A.5.165 read from T0506.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0506)A5 (1xw8A)Q166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1xw8A)G169 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1xw8A)R174 because P (beta_P) conformation "forbidden" or filtered. T0506 6 :PP 1xw8A 167 :AD T0506 9 :ITPR 1xw8A 170 :SLVP Number of specific fragments extracted= 2 number of extra gaps= 3 total=16441 # 2cwcA.5.32 read from T0506.t2k.many.frag # found chain 2cwcA in template set Warning: unaligning (T0506)P6 (2cwcA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2cwcA)T35 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 2cwcA 33 :K T0506 8 :VITPRG 2cwcA 36 :FPEVRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16443 # 1jkeA.5.79 read from T0506.t2k.many.frag # found chain 1jkeA in training set Warning: unaligning (T0506)P7 (1jkeA)A82 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1jkeA)G88 because S (epsilon) conformation "forbidden" or filtered. T0506 5 :AP 1jkeA 80 :TL T0506 8 :VITPR 1jkeA 83 :ADTER Number of specific fragments extracted= 2 number of extra gaps= 2 total=16445 # 2bg5A.5.210 read from T0506.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0506)P6 (2bg5A)L461 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2bg5A)A462 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2bg5A)M466 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 2bg5A 460 :T T0506 8 :VIT 2bg5A 463 :VDR T0506 12 :RG 2bg5A 467 :NE Number of specific fragments extracted= 3 number of extra gaps= 2 total=16448 1noyA expands to /projects/compbio/data/pdb/1noy.pdb.gz 1noyA:# 1noyA.5.44 read from T0506.t2k.many.frag # adding 1noyA to template set # found chain 1noyA in template set Warning: unaligning (T0506)P7 (1noyA)Y47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1noyA)D49 because G (3-10) conformation "forbidden" or filtered. T0506 5 :AP 1noyA 45 :SK T0506 8 :V 1noyA 48 :K T0506 10 :TPRG 1noyA 50 :IYGK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16451 # 1dkiA.5.208 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)P6 (1dkiA)T92 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1dkiA 91 :S T0506 7 :PVITPRG 1dkiA 93 :RQYNWNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16453 # 2dpmA.5.136 read from T0506.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)P6 (2dpmA)K138 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2dpmA)N139 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2dpmA)V143 because E (beta_S) conformation "forbidden" or filtered. T0506 5 :A 2dpmA 137 :S T0506 8 :VIT 2dpmA 140 :QFN T0506 12 :RG 2dpmA 144 :PY Number of specific fragments extracted= 3 number of extra gaps= 2 total=16456 # 1d9uA.5.120 read from T0506.t2k.many.frag # found chain 1d9uA in template set T0506 5 :APPVITPRG 1d9uA 121 :SNIWASLPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16457 # 1y0zA.5.259 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)A5 (1y0zA)D260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1y0zA)R262 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 1y0zA 261 :K T0506 8 :VITPRG 1y0zA 263 :NDPRKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=16459 1mswD expands to /projects/compbio/data/pdb/1msw.pdb.gz 1mswD:# 1mswD.5.10 read from T0506.t2k.many.frag # adding 1mswD to template set # found chain 1mswD in template set T0506 5 :APPVITPRG 1mswD 11 :FSDIELAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16460 # 1wraA.6.44 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 T0506 6 :PPVIT 1wraA 71 :SRYPW T0506 13 :GT 1wraA 78 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16462 # 1t8tA.6.223 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)P6 (1t8tA)S359 because G (3-10) conformation "forbidden" or filtered. T0506 7 :PVITPRGT 1t8tA 360 :RPHCLGKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16463 # 2f60K.6.22 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)P6 (2f60K)H142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2f60K)S143 because L (left) conformation "forbidden" or filtered. T0506 8 :VITPRGT 2f60K 144 :LDASQGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16464 # 1uxoA.6.102 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P6 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. T0506 7 :PVIT 1uxoA 102 :SLPT T0506 12 :RGT 1uxoA 107 :QML Number of specific fragments extracted= 2 number of extra gaps= 2 total=16466 # 1wolA.6.85 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)G13 (1wolA)A93 because N (gamma') conformation "forbidden" or filtered. T0506 6 :PPVITPR 1wolA 86 :PDVYYEG T0506 14 :T 1wolA 94 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=16468 # 1nw3A.6.122 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1nw3A)E129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1nw3A)P130 because P (beta_P) conformation "forbidden" or filtered. T0506 6 :PPVIT 1nw3A 123 :EKLNN T0506 14 :T 1nw3A 131 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=16470 # 1n93X.6.37 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P6 (1n93X)F33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. T0506 7 :PVIT 1n93X 34 :LQYT T0506 12 :RGT 1n93X 39 :GGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=16472 # 1wpbA.6.90 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wpbA)S90 Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 9 :ITPRGT 1wpbA 92 :DERRVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16473 # 1w33A.6.30 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P6 (1w33A)E100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w33A)K101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1w33A)T107 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1w33A 102 :FDFLS T0506 14 :T 1w33A 108 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=16475 # 1kqfA.6.857 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P6 (1kqfA)G858 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1kqfA)T859 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 8 :VIT 1kqfA 860 :NPL T0506 12 :RGT 1kqfA 864 :PNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=16477 # 1t77A.6.307 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P7 (1t77A)D2384 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1t77A)G2385 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1t77A)D2390 because P (beta_P) conformation "forbidden" or filtered. T0506 6 :P 1t77A 2383 :D T0506 9 :ITPR 1t77A 2386 :TVVS T0506 14 :T 1t77A 2391 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=16480 # 2pspA.6.56 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)P7 (2pspA)C58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (2pspA)A64 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 2pspA 57 :E T0506 8 :VITPR 2pspA 59 :VMQVS T0506 14 :T 2pspA 65 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=16483 # 1hbnB.6.63 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)P7 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1hbnB)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 6 :P 1hbnB 65 :P T0506 8 :VITP 1hbnB 67 :CKIM T0506 13 :GT 1hbnB 72 :RE Number of specific fragments extracted= 3 number of extra gaps= 2 total=16486 # 1ltzA.6.19 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)P6 (1ltzA)L20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1ltzA)S21 because E (beta_S) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1ltzA 22 :HDANDFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16487 # 1dkiA.6.209 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)P6 (1dkiA)T92 because G (3-10) conformation "forbidden" or filtered. T0506 7 :PVITPRGT 1dkiA 93 :RQYNWNNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=16488 # 1d9uA.6.121 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)R12 (1d9uA)P128 because P (beta_P) conformation "forbidden" or filtered. T0506 6 :PPVITP 1d9uA 122 :NIWASL T0506 13 :GT 1d9uA 129 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16490 # 2fhpA.6.10 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P6 (2fhpA)Y8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2fhpA)G10 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (2fhpA)A15 because P (beta_P) conformation "forbidden" or filtered. T0506 7 :P 2fhpA 9 :G T0506 9 :IT 2fhpA 11 :RR T0506 12 :R 2fhpA 14 :K T0506 14 :T 2fhpA 16 :L Number of specific fragments extracted= 4 number of extra gaps= 4 total=16494 # 2yhx.6.145 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)P6 (2yhx)I147 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (2yhx)G149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X153 T0506 7 :P 2yhx 148 :K T0506 9 :ITP 2yhx 150 :QIT T0506 13 :GT 2yhx 154 :QA Number of specific fragments extracted= 3 number of extra gaps= 3 total=16497 # 1jidA.6.24 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P6 (1jidA)N25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1jidA)K26 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1jidA 27 :KTIAEGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16498 # 1o2dA.6.123 read from T0506.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)P7 (1o2dA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 1o2dA 112 :K T0506 8 :VITPRGT 1o2dA 114 :LSVEDLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16500 # 1jkeA.6.80 read from T0506.t2k.many.frag # found chain 1jkeA in training set Warning: unaligning (T0506)P7 (1jkeA)A82 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 (1jkeA)T85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1jkeA)G88 because S (epsilon) conformation "forbidden" or filtered. T0506 6 :P 1jkeA 81 :L T0506 8 :VI 1jkeA 83 :AD T0506 11 :PR 1jkeA 86 :ER T0506 14 :T 1jkeA 89 :M Number of specific fragments extracted= 4 number of extra gaps= 3 total=16504 # 1y0zA.6.260 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P7 (1y0zA)R262 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 1y0zA 261 :K T0506 8 :VITPRGT 1y0zA 263 :NDPRKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16506 # 1xw8A.6.166 read from T0506.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0506)V8 (1xw8A)G169 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1xw8A)S175 because S (epsilon) conformation "forbidden" or filtered. T0506 6 :PP 1xw8A 167 :AD T0506 9 :ITPRG 1xw8A 170 :SLVPR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16508 # 1noyA.6.45 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)P7 (1noyA)Y47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1noyA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 6 :P 1noyA 46 :K T0506 8 :VITP 1noyA 48 :KDIY T0506 13 :GT 1noyA 53 :KN Number of specific fragments extracted= 3 number of extra gaps= 2 total=16511 # 1odhA.6.83 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)P6 (1odhA)R84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1odhA)D85 because T (delta_L) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1odhA 86 :CSTEEGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16512 # 1mswD.6.11 read from T0506.t2k.many.frag # found chain 1mswD in template set T0506 6 :PPVITPRGT 1mswD 12 :SDIELAAIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16513 # 1a6m.6.40 read from T0506.t2k.many.frag # found chain 1a6m in training set Warning: unaligning (T0506)P11 (1a6m)F46 because G (3-10) conformation "forbidden" or filtered. T0506 6 :PPVIT 1a6m 41 :EKFDR T0506 12 :RGT 1a6m 47 :KHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16515 # 1kicA.6.225 read from T0506.t2k.many.frag # found chain 1kicA in training set Warning: unaligning (T0506)P7 (1kicA)T215 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kicA)R219 because E (beta_S) conformation "forbidden" or filtered. T0506 6 :P 1kicA 214 :N T0506 8 :VIT 1kicA 216 :VPV T0506 12 :RGT 1kicA 220 :SPY Number of specific fragments extracted= 3 number of extra gaps= 2 total=16518 # 2cwcA.6.33 read from T0506.t2k.many.frag # found chain 2cwcA in template set Warning: unaligning (T0506)P6 (2cwcA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2cwcA)T35 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGT 2cwcA 36 :FPEVREM Number of specific fragments extracted= 1 number of extra gaps= 1 total=16519 1r44A expands to /projects/compbio/data/pdb/1r44.pdb.gz 1r44A:# 1r44A.6.138 read from T0506.t2k.many.frag # adding 1r44A to template set # found chain 1r44A in template set Warning: unaligning (T0506)P6 (1r44A)S139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1r44A)D142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 because of BadResidue code BAD_PEPTIDE in next template residue (1r44A)M144 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)M144 Warning: unaligning (T0506)R12 (1r44A)D145 because Y (epsilon') conformation "forbidden" or filtered. T0506 7 :PV 1r44A 140 :RF T0506 13 :GT 1r44A 146 :ER Number of specific fragments extracted= 2 number of extra gaps= 2 total=16521 # 1t8tA.7.224 read from T0506.t2k.many.frag # found chain 1t8tA in template set T0506 7 :PVITPRGTK 1t8tA 360 :RPHCLGKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16522 # 1wraA.7.45 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 T0506 7 :PVIT 1wraA 72 :RYPW T0506 13 :GT 1wraA 78 :GI Number of specific fragments extracted= 2 number of extra gaps= 2 total=16524 # 2f60K.7.23 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)P7 (2f60K)S143 because L (left) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 2f60K 144 :LDASQGTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=16525 # 1wolA.7.86 read from T0506.t2k.many.frag # found chain 1wolA in template set T0506 7 :PVITPRGTK 1wolA 87 :DVYYEGAPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16526 # 1uxoA.7.103 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. T0506 7 :PVIT 1uxoA 102 :SLPT T0506 12 :RGTK 1uxoA 107 :QMLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16528 # 1kqfA.7.858 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P7 (1kqfA)T859 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1kqfA)V866 because D (zeta) conformation "forbidden" or filtered. T0506 8 :VIT 1kqfA 860 :NPL T0506 12 :RG 1kqfA 864 :PN T0506 15 :K 1kqfA 867 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=16531 # 1ji7A.7.0 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)P7 because first residue in template chain is (1ji7A)S15 T0506 8 :VITPRGTK 1ji7A 16 :IRLPAHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16532 # 1w33A.7.31 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P7 (1w33A)K101 because L (left) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1w33A 102 :FDFLSTFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=16533 # 1n93X.7.38 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. T0506 7 :PVIT 1n93X 34 :LQYT T0506 12 :RGTK 1n93X 39 :GGSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16535 # 1t77A.7.308 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P7 (1t77A)D2384 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1t77A)S2389 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITP 1t77A 2385 :GTVV T0506 13 :GTK 1t77A 2390 :DVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16537 # 1dkiA.7.210 read from T0506.t2k.many.frag # found chain 1dkiA in training set T0506 7 :PVITPRGTK 1dkiA 93 :RQYNWNNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16538 # 1wpbA.7.91 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 Warning: unaligning (T0506)K15 (1wpbA)F98 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPRGT 1wpbA 92 :DERRVT Number of specific fragments extracted= 1 number of extra gaps= 2 total=16539 # 1nw3A.7.123 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1nw3A)P130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1nw3A)F131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1nw3A)S132 because Y (epsilon') conformation "forbidden" or filtered. T0506 7 :PVIT 1nw3A 124 :KLNN T0506 12 :R 1nw3A 129 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=16541 # 1ltzA.7.20 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)P7 (1ltzA)S21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1ltzA)L29 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRGT 1ltzA 22 :HDANDFT Number of specific fragments extracted= 1 number of extra gaps= 2 total=16542 # 1hbnB.7.64 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)P7 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1hbnB 67 :CKIMGREL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16543 # 2pspA.7.57 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)P7 (2pspA)C58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (2pspA)A64 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 2pspA 59 :VMQVS T0506 14 :TK 2pspA 65 :RK Number of specific fragments extracted= 2 number of extra gaps= 2 total=16545 # 1d9uA.7.122 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)R12 (1d9uA)P128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1d9uA)G131 because L (left) conformation "forbidden" or filtered. T0506 7 :PVITP 1d9uA 123 :IWASL T0506 13 :GT 1d9uA 129 :GA Number of specific fragments extracted= 2 number of extra gaps= 2 total=16547 # 2fhpA.7.11 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2fhpA)D17 because P (beta_P) conformation "forbidden" or filtered. T0506 7 :PVIT 2fhpA 9 :GGRR T0506 12 :RGT 2fhpA 14 :KAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16549 # 2yhx.7.146 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)V8 (2yhx)G149 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X153 Warning: unaligning (T0506)K15 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X156 T0506 7 :P 2yhx 148 :K T0506 9 :ITP 2yhx 150 :QIT T0506 13 :GT 2yhx 154 :QA Number of specific fragments extracted= 3 number of extra gaps= 3 total=16552 # 1jkeA.7.81 read from T0506.t2k.many.frag # found chain 1jkeA in training set Warning: unaligning (T0506)P7 (1jkeA)A82 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1jkeA 83 :ADTERGMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16553 # 1xw8A.7.167 read from T0506.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0506)V8 (1xw8A)G169 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1xw8A)S175 because S (epsilon) conformation "forbidden" or filtered. T0506 7 :P 1xw8A 168 :D T0506 9 :ITPRG 1xw8A 170 :SLVPR T0506 15 :K 1xw8A 176 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=16556 2bvlA expands to /projects/compbio/data/pdb/2bvl.pdb.gz 2bvlA:# 2bvlA.7.322 read from T0506.t2k.many.frag # adding 2bvlA to template set # found chain 2bvlA in template set Warning: unaligning (T0506)I9 (2bvlA)E325 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2bvlA)I327 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2bvlA)T331 because P (beta_P) conformation "forbidden" or filtered. T0506 7 :PV 2bvlA 323 :YK T0506 10 :T 2bvlA 326 :Y T0506 12 :RGT 2bvlA 328 :PEY Number of specific fragments extracted= 3 number of extra gaps= 3 total=16559 # 1jidA.7.25 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P7 (1jidA)K26 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1jidA 27 :KTIAEGRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16560 # 1noyA.7.46 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)P7 (1noyA)Y47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1noyA)N54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1noyA)C55 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRG 1noyA 48 :KDIYGK Number of specific fragments extracted= 1 number of extra gaps= 2 total=16561 # 1y0zA.7.261 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P7 (1y0zA)R262 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1y0zA)T270 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRGT 1y0zA 263 :NDPRKAV Number of specific fragments extracted= 1 number of extra gaps= 2 total=16562 # 1r44A.7.139 read from T0506.t2k.many.frag # found chain 1r44A in template set Warning: unaligning (T0506)T10 because of BadResidue code BAD_PEPTIDE in next template residue (1r44A)M144 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)M144 Warning: unaligning (T0506)R12 (1r44A)D145 because Y (epsilon') conformation "forbidden" or filtered. T0506 7 :PVI 1r44A 140 :RFD T0506 13 :GTK 1r44A 146 :ERS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16564 # 1o2dA.7.124 read from T0506.t2k.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)P7 (1o2dA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1o2dA 114 :LSVEDLYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=16565 # 1dc1A.7.51 read from T0506.t2k.many.frag # found chain 1dc1A in training set T0506 7 :PVITPRGTK 1dc1A 52 :AASVAKTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16566 # 1h5uA.7.510 read from T0506.t2k.many.frag # found chain 1h5uA in training set T0506 7 :PVITPRGTK 1h5uA 511 :YISDLDQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16567 # 2a6hE.7.43 read from T0506.t2k.many.frag # found chain 2a6hE in template set Warning: unaligning (T0506)P7 (2a6hE)E44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2a6hE)M48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 because of BadResidue code BAD_PEPTIDE in next template residue (2a6hE)L51 Warning: unaligning (T0506)T14 because of BadResidue code BAD_PEPTIDE at template residue (2a6hE)L51 T0506 8 :VIT 2a6hE 45 :RPK T0506 12 :R 2a6hE 49 :Q T0506 15 :K 2a6hE 52 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=16570 # 1t8tA.8.225 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)T14 (1t8tA)T367 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1t8tA)G369 because T (delta_L) conformation "forbidden" or filtered. T0506 8 :VITPRG 1t8tA 361 :PHCLGK T0506 15 :K 1t8tA 368 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=16572 # 1wraA.8.46 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)T81 T0506 8 :VIT 1wraA 73 :YPW T0506 13 :GT 1wraA 78 :GI Number of specific fragments extracted= 2 number of extra gaps= 2 total=16574 # 2f60K.8.24 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)G13 (2f60K)G149 because P (beta_P) conformation "forbidden" or filtered. T0506 8 :VITPR 2f60K 144 :LDASQ T0506 14 :TKI 2f60K 150 :TAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16576 # 1wolA.8.87 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)R12 (1wolA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1wolA)A93 because N (gamma') conformation "forbidden" or filtered. T0506 8 :VITP 1wolA 88 :VYYE T0506 14 :TKI 1wolA 94 :PYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16578 # 1uxoA.8.104 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. T0506 8 :VIT 1uxoA 103 :LPT T0506 12 :RGTKI 1uxoA 107 :QMLDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16580 # 1dkiA.8.211 read from T0506.t2k.many.frag # found chain 1dkiA in training set T0506 8 :VITPRGTKI 1dkiA 94 :QYNWNNILP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16581 # 1w33A.8.32 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G13 (1w33A)T107 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1w33A 102 :FDFLS T0506 14 :TKI 1w33A 108 :FKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16583 # 1ji7A.8.1 read from T0506.t2k.many.frag # found chain 1ji7A in training set T0506 8 :VITPRGTKI 1ji7A 16 :IRLPAHLRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16584 # 1kqfA.8.859 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 8 :VIT 1kqfA 860 :NPL T0506 12 :RGTKI 1kqfA 864 :PNVVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16586 # 1n93X.8.39 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. T0506 8 :VIT 1n93X 35 :QYT T0506 12 :RGTKI 1n93X 39 :GGSDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16588 # 1t77A.8.309 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)V8 (1t77A)G2385 because T (delta_L) conformation "forbidden" or filtered. T0506 9 :ITPRGTKI 1t77A 2386 :TVVSDVEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16589 # 1ltzA.8.21 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)K15 (1ltzA)L29 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRGT 1ltzA 22 :HDANDFT T0506 16 :I 1ltzA 30 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=16591 # 1wpbA.8.92 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 Warning: unaligning (T0506)G13 (1wpbA)V96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1wpbA)L99 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1wpbA 92 :DERR T0506 14 :TK 1wpbA 97 :TF Number of specific fragments extracted= 2 number of extra gaps= 3 total=16593 # 2fhpA.8.12 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. T0506 8 :VIT 2fhpA 10 :GRR T0506 12 :RGTKI 2fhpA 14 :KALDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16595 # 1nw3A.8.124 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1nw3A)P130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1nw3A)S132 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VIT 1nw3A 125 :LNN T0506 12 :R 1nw3A 129 :E T0506 14 :T 1nw3A 131 :F T0506 16 :I 1nw3A 133 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=16599 # 1d9uA.8.123 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)K15 (1d9uA)G131 because L (left) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1d9uA 124 :WASLPGA T0506 16 :I 1d9uA 132 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=16601 1y6zA expands to /projects/compbio/data/pdb/1y6z.pdb.gz 1y6zA:Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 902, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 904, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 949, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1y6zA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1y6zA # 1y6zA.8.0 read from T0506.t2k.many.frag # adding 1y6zA to template set # found chain 1y6zA in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1y6zA)P3 T0506 13 :GTKI 1y6zA 4 :IWKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16602 # 1hbnB.8.65 read from T0506.t2k.many.frag # found chain 1hbnB in training set T0506 8 :VITPRGTKI 1hbnB 67 :CKIMGRELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16603 # 2pspA.8.58 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)G13 (2pspA)A64 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 2pspA 59 :VMQVS T0506 14 :TKI 2pspA 65 :RKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16605 # 1jkeA.8.82 read from T0506.t2k.many.frag # found chain 1jkeA in training set T0506 8 :VITPRGTKI 1jkeA 83 :ADTERGMRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16606 # 2bvlA.8.323 read from T0506.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0506)I9 (2bvlA)E325 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2bvlA)I327 because D (zeta) conformation "forbidden" or filtered. T0506 8 :V 2bvlA 324 :K T0506 10 :T 2bvlA 326 :Y T0506 12 :RGTKI 2bvlA 328 :PEYTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=16609 # 2yhx.8.147 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)R12 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X153 Warning: unaligning (T0506)G13 (2yhx)Q154 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 because of BadResidue code NON_STANDARD_RESIDUE at template residue (2yhx)X156 Warning: unaligning (T0506)I16 (2yhx)A157 because L (left) conformation "forbidden" or filtered. T0506 8 :VITP 2yhx 149 :GQIT T0506 14 :T 2yhx 155 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=16611 # 1r44A.8.140 read from T0506.t2k.many.frag # found chain 1r44A in template set Warning: unaligning (T0506)I9 (1r44A)D142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 because of BadResidue code BAD_PEPTIDE in next template residue (1r44A)M144 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)M144 T0506 8 :V 1r44A 141 :F T0506 12 :RGTKI 1r44A 145 :DERSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16613 # 1dc1A.8.52 read from T0506.t2k.many.frag # found chain 1dc1A in training set Warning: unaligning (T0506)G13 (1dc1A)T58 because E (beta_S) conformation "forbidden" or filtered. T0506 8 :VITPR 1dc1A 53 :ASVAK T0506 14 :TKI 1dc1A 59 :PKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16615 # 1h5uA.8.511 read from T0506.t2k.many.frag # found chain 1h5uA in training set T0506 8 :VITPRGTKI 1h5uA 512 :ISDLDQLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16616 # 1xw8A.8.168 read from T0506.t2k.many.frag # found chain 1xw8A in template set Warning: unaligning (T0506)V8 (1xw8A)G169 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1xw8A)P173 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1xw8A)R174 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITP 1xw8A 170 :SLV T0506 14 :TKI 1xw8A 175 :SQS Number of specific fragments extracted= 2 number of extra gaps= 2 total=16618 # 1noyA.8.47 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)V8 (1noyA)K48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1noyA)G52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1noyA)C55 because Y (epsilon') conformation "forbidden" or filtered. T0506 9 :ITP 1noyA 49 :DIY T0506 13 :GT 1noyA 53 :KN T0506 16 :I 1noyA 56 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=16621 # 1y0zA.8.262 read from T0506.t2k.many.frag # found chain 1y0zA in template set T0506 8 :VITPRGTKI 1y0zA 263 :NDPRKAVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16622 # 1jidA.8.26 read from T0506.t2k.many.frag # found chain 1jidA in training set T0506 8 :VITPRGTKI 1jidA 27 :KTIAEGRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16623 # 1ug6A.8.261 read from T0506.t2k.many.frag # found chain 1ug6A in training set T0506 8 :VITPRGTKI 1ug6A 262 :VPILSRDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=16624 # 1t8tA.9.226 read from T0506.t2k.many.frag # found chain 1t8tA in template set T0506 9 :ITPRGTKIE 1t8tA 362 :HCLGKTKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16625 # 1wraA.9.47 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)T81 T0506 9 :IT 1wraA 74 :PW T0506 13 :GT 1wraA 78 :GI T0506 17 :E 1wraA 82 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=16628 # 1dkiA.9.212 read from T0506.t2k.many.frag # found chain 1dkiA in training set T0506 9 :ITPRGTKIE 1dkiA 95 :YNWNNILPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16629 # 1w33A.9.33 read from T0506.t2k.many.frag # found chain 1w33A in template set T0506 9 :ITPRGTKIE 1w33A 103 :DFLSTFKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16630 # 2f60K.9.25 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)E17 (2f60K)G153 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPRGTKI 2f60K 145 :DASQGTAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16631 # 1ji7A.9.2 read from T0506.t2k.many.frag # found chain 1ji7A in training set T0506 9 :ITPRGTKIE 1ji7A 17 :RLPAHLRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16632 # 1ltzA.9.22 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)K15 (1ltzA)L29 because Y (epsilon') conformation "forbidden" or filtered. T0506 9 :ITPRGT 1ltzA 23 :DANDFT T0506 16 :IE 1ltzA 30 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16634 # 1wolA.9.88 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)G13 (1wolA)A93 because N (gamma') conformation "forbidden" or filtered. T0506 9 :ITPR 1wolA 89 :YYEG T0506 14 :TKIE 1wolA 94 :PYEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16636 # 1uxoA.9.105 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. T0506 9 :IT 1uxoA 104 :PT T0506 12 :RGTKIE 1uxoA 107 :QMLDEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16638 # 1kqfA.9.860 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 9 :IT 1kqfA 861 :PL T0506 12 :RGTKIE 1kqfA 864 :PNVVSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16640 # 1t77A.9.310 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)G13 (1t77A)D2390 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPR 1t77A 2386 :TVVS T0506 14 :TKIE 1t77A 2391 :VELP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16642 # 2fhpA.9.13 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. T0506 9 :IT 2fhpA 11 :RR T0506 12 :RGTKIE 2fhpA 14 :KALDGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16644 # 1n93X.9.40 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1n93X)G39 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1n93X)H44 because E (beta_S) conformation "forbidden" or filtered. T0506 9 :IT 1n93X 36 :YT T0506 13 :GTKI 1n93X 40 :GSDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=16646 # 1y6zA.9.1 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1y6zA)P3 Warning: unaligning (T0506)E17 (1y6zA)D8 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKI 1y6zA 4 :IWKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16647 # 1d9uA.9.124 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)K15 (1d9uA)G131 because L (left) conformation "forbidden" or filtered. T0506 9 :ITPRGT 1d9uA 125 :ASLPGA T0506 16 :IE 1d9uA 132 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16649 # 1wpbA.9.93 read from T0506.t2k.many.frag # found chain 1wpbA in template set T0506 9 :ITPRGTKIE 1wpbA 92 :DERRVTFLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16650 # 2bvlA.9.324 read from T0506.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0506)I9 (2bvlA)E325 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (2bvlA)I327 because D (zeta) conformation "forbidden" or filtered. T0506 10 :T 2bvlA 326 :Y T0506 12 :RGTKIE 2bvlA 328 :PEYTSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16652 # 1h5uA.9.512 read from T0506.t2k.many.frag # found chain 1h5uA in training set Warning: unaligning (T0506)T10 (1h5uA)D514 because D (zeta) conformation "forbidden" or filtered. T0506 9 :I 1h5uA 513 :S T0506 11 :PRGTKIE 1h5uA 515 :LDQLRKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16654 # 1nw3A.9.125 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1nw3A)E129 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1nw3A)F131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1nw3A)S132 because Y (epsilon') conformation "forbidden" or filtered. T0506 9 :IT 1nw3A 126 :NN T0506 13 :G 1nw3A 130 :P T0506 16 :IE 1nw3A 133 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=16657 # 1jkeA.9.83 read from T0506.t2k.many.frag # found chain 1jkeA in training set T0506 9 :ITPRGTKIE 1jkeA 84 :DTERGMRPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16658 # 1y0zA.9.263 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)R12 (1y0zA)K267 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITP 1y0zA 264 :DPR T0506 13 :GTKIE 1y0zA 268 :AVTFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16660 # 1dc1A.9.53 read from T0506.t2k.many.frag # found chain 1dc1A in training set T0506 9 :ITPRGTKIE 1dc1A 54 :SVAKTPKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16661 # 1r44A.9.141 read from T0506.t2k.many.frag # found chain 1r44A in template set Warning: unaligning (T0506)I9 (1r44A)D142 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 because of BadResidue code BAD_PEPTIDE in next template residue (1r44A)M144 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)M144 Warning: unaligning (T0506)R12 (1r44A)D145 because Y (epsilon') conformation "forbidden" or filtered. T0506 13 :GTKIE 1r44A 146 :ERSHH Number of specific fragments extracted= 1 number of extra gaps= 1 total=16662 # 1hbnB.9.66 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)R12 (1hbnB)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1hbnB)R72 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITP 1hbnB 68 :KIM T0506 14 :TKIE 1hbnB 73 :ELDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16664 1u02A expands to /projects/compbio/data/pdb/1u02.pdb.gz 1u02A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u02A.9.10 read from T0506.t2k.many.frag # adding 1u02A to template set # found chain 1u02A in template set Warning: unaligning (T0506)P11 (1u02A)V13 because E (beta_S) conformation "forbidden" or filtered. T0506 9 :IT 1u02A 11 :TL T0506 12 :RGTKIE 1u02A 14 :PIIMNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16666 # 2pspA.9.59 read from T0506.t2k.many.frag # found chain 2pspA in template set T0506 9 :ITPRGTKIE 2pspA 60 :MQVSARKNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=16667 # 1jidA.9.27 read from T0506.t2k.many.frag # found chain 1jidA in training set T0506 9 :ITPRGTKIE 1jidA 28 :TIAEGRRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16668 # 2axtB.9.117 read from T0506.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0506)P11 (2axtB)L120 because E (beta_S) conformation "forbidden" or filtered. T0506 9 :IT 2axtB 118 :WD T0506 12 :RGTKIE 2axtB 121 :ELFRDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16670 # 1noyA.9.48 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)R12 (1noyA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 9 :ITP 1noyA 49 :DIY T0506 13 :GTKIE 1noyA 53 :KNCAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16672 # 1e2wA.9.75 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)K15 (1e2wA)E82 because Y (epsilon') conformation "forbidden" or filtered. T0506 9 :ITPRGT 1e2wA 76 :ILPEGF T0506 16 :IE 1e2wA 83 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16674 # 1t8tA.10.227 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)E17 (1t8tA)R370 because P (beta_P) conformation "forbidden" or filtered. T0506 10 :TPRGTKI 1t8tA 363 :CLGKTKG T0506 18 :P 1t8tA 371 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=16676 # 1w33A.10.34 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G13 (1w33A)T107 because G (3-10) conformation "forbidden" or filtered. T0506 10 :TPR 1w33A 104 :FLS T0506 14 :TKIEP 1w33A 108 :FKVGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16678 # 1dkiA.10.213 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)E17 (1dkiA)T103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :TPRGTKI 1dkiA 96 :NWNNILP Number of specific fragments extracted= 1 number of extra gaps= 1 total=16679 # 2f60K.10.26 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)K15 (2f60K)A151 because P (beta_P) conformation "forbidden" or filtered. T0506 10 :TPRGT 2f60K 146 :ASQGT T0506 16 :IEP 2f60K 152 :TGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16681 # 1ltzA.10.23 read from T0506.t2k.many.frag # found chain 1ltzA in training set T0506 10 :TPRGTKIEP 1ltzA 24 :ANDFTLPQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16682 # 1ji7A.10.3 read from T0506.t2k.many.frag # found chain 1ji7A in training set T0506 10 :TPRGTKIEP 1ji7A 18 :LPAHLRLQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16683 # 1wraA.10.48 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)T81 T0506 10 :T 1wraA 75 :W T0506 13 :GT 1wraA 78 :GI T0506 17 :EP 1wraA 82 :SY Number of specific fragments extracted= 3 number of extra gaps= 2 total=16686 # 1kqfA.10.861 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 10 :T 1kqfA 862 :L T0506 12 :RGTKIEP 1kqfA 864 :PNVVSNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16688 # 2fhpA.10.14 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. T0506 10 :T 2fhpA 12 :R T0506 12 :RGTKIE 2fhpA 14 :KALDGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=16690 # 1wolA.10.89 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)G13 (1wolA)A93 because N (gamma') conformation "forbidden" or filtered. T0506 10 :TPR 1wolA 90 :YEG T0506 14 :TKIEP 1wolA 94 :PYEYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16692 # 1uxoA.10.106 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)T10 (1uxoA)T105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1uxoA)T113 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTKIE 1uxoA 107 :QMLDEF Number of specific fragments extracted= 1 number of extra gaps= 2 total=16693 # 1t77A.10.311 read from T0506.t2k.many.frag # found chain 1t77A in template set T0506 10 :TPRGTKIEP 1t77A 2387 :VVSDVELPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16694 # 1y6zA.10.2 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1y6zA)P3 Warning: unaligning (T0506)E17 (1y6zA)D8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1y6zA)E9 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKI 1y6zA 4 :IWKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=16695 # 1n93X.10.41 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1n93X)G39 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1n93X)G40 because S (epsilon) conformation "forbidden" or filtered. T0506 10 :T 1n93X 37 :T T0506 14 :TKIEP 1n93X 41 :SDPHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16697 # 1wpbA.10.94 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)G13 (1wpbA)V96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :TPR 1wpbA 93 :ERR T0506 14 :TKI 1wpbA 97 :TFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=16699 # 1d9uA.10.125 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)I16 (1d9uA)Y132 because G (3-10) conformation "forbidden" or filtered. T0506 10 :TPRGTK 1d9uA 126 :SLPGAG T0506 17 :EP 1d9uA 133 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=16701 # 2bvlA.10.325 read from T0506.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0506)P11 (2bvlA)I327 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2bvlA)T331 because P (beta_P) conformation "forbidden" or filtered. T0506 10 :T 2bvlA 326 :Y T0506 12 :RGT 2bvlA 328 :PEY T0506 16 :IEP 2bvlA 332 :SEH Number of specific fragments extracted= 3 number of extra gaps= 2 total=16704 # 1e2wA.10.76 read from T0506.t2k.many.frag # found chain 1e2wA in training set T0506 10 :TPRGTKIEP 1e2wA 77 :LPEGFELAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16705 # 1u02A.10.11 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)P11 (1u02A)V13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1u02A)P14 because P (beta_P) conformation "forbidden" or filtered. T0506 10 :T 1u02A 12 :L T0506 13 :GTKIEP 1u02A 15 :IIMNPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=16707 # 1jkeA.10.84 read from T0506.t2k.many.frag # found chain 1jkeA in training set Warning: unaligning (T0506)K15 (1jkeA)R90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1jkeA)F93 because D (zeta) conformation "forbidden" or filtered. T0506 10 :TPRGT 1jkeA 85 :TERGM T0506 16 :IE 1jkeA 91 :PS Number of specific fragments extracted= 2 number of extra gaps= 2 total=16709 # 1y0zA.10.264 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)K15 (1y0zA)T270 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. T0506 10 :TPRGT 1y0zA 265 :PRKAV T0506 16 :IE 1y0zA 271 :FG Number of specific fragments extracted= 2 number of extra gaps= 2 total=16711 # 1nw3A.10.126 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1nw3A)F131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1nw3A)S132 because Y (epsilon') conformation "forbidden" or filtered. T0506 10 :T 1nw3A 127 :N T0506 12 :RG 1nw3A 129 :EP T0506 16 :IEP 1nw3A 133 :PEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=16714 # 1h5uA.10.513 read from T0506.t2k.many.frag # found chain 1h5uA in training set T0506 10 :TPRGTKIEP 1h5uA 514 :DLDQLRKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16715 # 1r44A.10.142 read from T0506.t2k.many.frag # found chain 1r44A in template set Warning: unaligning (T0506)T10 because of BadResidue code BAD_PEPTIDE in next template residue (1r44A)M144 Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)M144 Warning: unaligning (T0506)P18 (1r44A)A151 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTKIE 1r44A 145 :DERSHH Number of specific fragments extracted= 1 number of extra gaps= 2 total=16716 # 1aquA.10.257 read from T0506.t2k.many.frag # found chain 1aquA in training set Warning: unaligning (T0506)I16 (1aquA)G262 because T (delta_L) conformation "forbidden" or filtered. T0506 10 :TPRGTK 1aquA 256 :MRKGII T0506 17 :EP 1aquA 263 :DW Number of specific fragments extracted= 2 number of extra gaps= 1 total=16718 # 1noyA.10.49 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)R12 (1noyA)G52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1noyA)C55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1noyA)Q58 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :TP 1noyA 50 :IY T0506 13 :GT 1noyA 53 :KN T0506 16 :IE 1noyA 56 :AP Number of specific fragments extracted= 3 number of extra gaps= 3 total=16721 # 1dc1A.10.54 read from T0506.t2k.many.frag # found chain 1dc1A in training set T0506 10 :TPRGTKIEP 1dc1A 55 :VAKTPKDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16722 # 2axtB.10.118 read from T0506.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0506)P11 (2axtB)L120 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :T 2axtB 119 :D T0506 12 :RGTKIEP 2axtB 121 :ELFRDPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16724 # 1jidA.10.28 read from T0506.t2k.many.frag # found chain 1jidA in training set T0506 10 :TPRGTKIEP 1jidA 29 :IAEGRRIPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16725 # 1hbnB.10.67 read from T0506.t2k.many.frag # found chain 1hbnB in training set T0506 10 :TPRGTKIEP 1hbnB 69 :IMGRELDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16726 # 1t8tA.11.228 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)I16 (1t8tA)G369 because T (delta_L) conformation "forbidden" or filtered. T0506 11 :PRGTK 1t8tA 364 :LGKTK T0506 17 :EPS 1t8tA 370 :RTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16728 # 1w33A.11.35 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G13 (1w33A)T107 because G (3-10) conformation "forbidden" or filtered. T0506 11 :PR 1w33A 105 :LS T0506 14 :TKIEPS 1w33A 108 :FKVGPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16730 # 1dkiA.11.214 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. T0506 11 :PRGTKIE 1dkiA 97 :WNNILPT T0506 19 :S 1dkiA 105 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=16732 # 1ltzA.11.24 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)K15 (1ltzA)L29 because Y (epsilon') conformation "forbidden" or filtered. T0506 11 :PRGT 1ltzA 25 :NDFT T0506 16 :IEPS 1ltzA 30 :PQPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16734 # 2f60K.11.27 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)S19 (2f60K)R155 because L (left) conformation "forbidden" or filtered. T0506 11 :PRGTKIEP 2f60K 147 :SQGTATGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=16735 # 1ji7A.11.4 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)E17 (1ji7A)Q25 because P (beta_P) conformation "forbidden" or filtered. T0506 11 :PRGTKI 1ji7A 19 :PAHLRL T0506 18 :PS 1ji7A 26 :PI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16737 # 2fhpA.11.15 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P11 (2fhpA)L13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (2fhpA)A15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2fhpA)D17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. T0506 12 :R 2fhpA 14 :K T0506 14 :T 2fhpA 16 :L T0506 16 :IE 2fhpA 18 :GD T0506 19 :S 2fhpA 21 :T Number of specific fragments extracted= 4 number of extra gaps= 4 total=16741 # 1y6zA.11.3 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1y6zA)P3 Warning: unaligning (T0506)P18 (1y6zA)E9 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKIE 1y6zA 4 :IWKQD T0506 19 :S 1y6zA 10 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=16743 # 1kqfA.11.862 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)P11 (1kqfA)H863 because D (zeta) conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1kqfA 864 :PNVVSNPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16744 # 1wraA.11.49 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)P11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)T81 T0506 13 :GT 1wraA 78 :GI T0506 17 :EPS 1wraA 82 :SYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=16746 # 1uxoA.11.107 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P11 (1uxoA)L106 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1uxoA)T113 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTKIE 1uxoA 107 :QMLDEF T0506 19 :S 1uxoA 114 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=16748 # 1wolA.11.90 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)R12 (1wolA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1wolA)A93 because N (gamma') conformation "forbidden" or filtered. T0506 11 :P 1wolA 91 :E T0506 14 :TKIEPS 1wolA 94 :PYEYYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16750 # 1t77A.11.312 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)R12 (1t77A)S2389 because Y (epsilon') conformation "forbidden" or filtered. T0506 11 :P 1t77A 2388 :V T0506 13 :GTKIEPS 1t77A 2390 :DVELPPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=16752 # 1n93X.11.42 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)P11 (1n93X)V38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1n93X)G46 because Y (epsilon') conformation "forbidden" or filtered. T0506 12 :RGTKIEP 1n93X 39 :GGSDPHP Number of specific fragments extracted= 1 number of extra gaps= 2 total=16753 # 1e2wA.11.77 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)R12 (1e2wA)E79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1e2wA)E82 because Y (epsilon') conformation "forbidden" or filtered. T0506 11 :P 1e2wA 78 :P T0506 13 :GT 1e2wA 80 :GF T0506 16 :IEPS 1e2wA 83 :LAPP Number of specific fragments extracted= 3 number of extra gaps= 2 total=16756 # 1wpbA.11.95 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)G13 (1wpbA)V96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. T0506 11 :PR 1wpbA 94 :RR T0506 14 :TKIE 1wpbA 97 :TFLG T0506 19 :S 1wpbA 102 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=16759 # 1u02A.11.12 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)P11 (1u02A)V13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1u02A)I15 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :R 1u02A 14 :P T0506 14 :TKIEPS 1u02A 16 :IMNPEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16761 # 1d9uA.11.126 read from T0506.t2k.many.frag # found chain 1d9uA in template set T0506 11 :PRGTKIEPS 1d9uA 127 :LPGAGYGQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16762 # 1jkeA.11.85 read from T0506.t2k.many.frag # found chain 1jkeA in training set Warning: unaligning (T0506)P18 (1jkeA)F93 because D (zeta) conformation "forbidden" or filtered. T0506 11 :PRGTKIE 1jkeA 86 :ERGMRPS T0506 19 :S 1jkeA 94 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=16764 # 1aquA.11.258 read from T0506.t2k.many.frag # found chain 1aquA in training set T0506 11 :PRGTKIEPS 1aquA 257 :RKGIIGDWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=16765 # 1h5uA.11.514 read from T0506.t2k.many.frag # found chain 1h5uA in training set T0506 11 :PRGTKIEPS 1h5uA 515 :LDQLRKLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=16766 # 2bvlA.11.326 read from T0506.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0506)P11 (2bvlA)I327 because D (zeta) conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 2bvlA 328 :PEYTSEHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=16767 # 1r44A.11.143 read from T0506.t2k.many.frag # found chain 1r44A in template set Warning: unaligning (T0506)P11 because of BadResidue code BAD_PEPTIDE at template residue (1r44A)M144 Warning: unaligning (T0506)R12 (1r44A)D145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1r44A)A151 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKIE 1r44A 146 :ERSHH T0506 19 :S 1r44A 152 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=16769 # 1noyA.11.50 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)R12 (1noyA)G52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1noyA)C55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1noyA)Q58 because E (beta_S) conformation "forbidden" or filtered. T0506 11 :P 1noyA 51 :Y T0506 13 :GT 1noyA 53 :KN T0506 16 :IE 1noyA 56 :AP T0506 19 :S 1noyA 59 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=16773 # 1dc1A.11.55 read from T0506.t2k.many.frag # found chain 1dc1A in training set T0506 11 :PRGTKIEPS 1dc1A 56 :AKTPKDLLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16774 # 1y0zA.11.265 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)K15 (1y0zA)T270 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0506 11 :PRGT 1y0zA 266 :RKAV T0506 16 :IE 1y0zA 271 :FG Number of specific fragments extracted= 2 number of extra gaps= 2 total=16776 # 1nw3A.11.127 read from T0506.t2k.many.frag # found chain 1nw3A in template set Warning: unaligning (T0506)P11 (1nw3A)Y128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1nw3A)P130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1nw3A)F131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1nw3A)S132 because Y (epsilon') conformation "forbidden" or filtered. T0506 12 :R 1nw3A 129 :E T0506 16 :IEPS 1nw3A 133 :PEVY Number of specific fragments extracted= 2 number of extra gaps= 2 total=16778 # 2axtB.11.119 read from T0506.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0506)P11 (2axtB)L120 because E (beta_S) conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 2axtB 121 :ELFRDPRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=16779 1uz3A expands to /projects/compbio/data/pdb/1uz3.pdb.gz 1uz3A:# 1uz3A.11.2 read from T0506.t2k.many.frag # adding 1uz3A to template set # found chain 1uz3A in template set Warning: unaligning (T0506)G13 (1uz3A)V5 because G (3-10) conformation "forbidden" or filtered. T0506 11 :PR 1uz3A 3 :MP T0506 14 :TKIEPS 1uz3A 6 :VWPTLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16781 # 1jidA.11.29 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)R12 (1jidA)E31 because G (3-10) conformation "forbidden" or filtered. T0506 11 :P 1jidA 30 :A T0506 13 :GTKIEPS 1jidA 32 :GRRIPIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16783 # 1t8tA.12.229 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)R12 (1t8tA)G365 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1t8tA)G369 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1t8tA)H372 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTK 1t8tA 366 :KTK T0506 17 :EP 1t8tA 370 :RT T0506 20 :A 1t8tA 373 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=16786 # 1w33A.12.36 read from T0506.t2k.many.frag # found chain 1w33A in template set T0506 12 :RGTKIEPSA 1w33A 106 :STFKVGPYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=16787 # 1dkiA.12.215 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)E17 (1dkiA)T103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1dkiA)G106 because T (delta_L) conformation "forbidden" or filtered. T0506 12 :RGTKI 1dkiA 98 :NNILP T0506 19 :S 1dkiA 105 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=16789 # 1ltzA.12.25 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)K15 (1ltzA)L29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1ltzA)Q31 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :RGT 1ltzA 26 :DFT T0506 16 :I 1ltzA 30 :P T0506 18 :PSA 1ltzA 32 :PLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16792 # 2f60K.12.28 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)G13 (2f60K)G149 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (2f60K)R155 because L (left) conformation "forbidden" or filtered. T0506 12 :R 2f60K 148 :Q T0506 14 :TKIEP 2f60K 150 :TATGP T0506 20 :A 2f60K 156 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=16795 # 1ji7A.12.5 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)E17 (1ji7A)Q25 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :RGTKI 1ji7A 20 :AHLRL T0506 18 :PSA 1ji7A 26 :PIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=16797 # 2fhpA.12.16 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)G13 (2fhpA)A15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2fhpA)D17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (2fhpA)T21 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :R 2fhpA 14 :K T0506 14 :T 2fhpA 16 :L T0506 16 :IE 2fhpA 18 :GD T0506 20 :A 2fhpA 22 :R Number of specific fragments extracted= 4 number of extra gaps= 3 total=16801 # 1e2wA.12.78 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)K15 (1e2wA)E82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1e2wA)A84 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :RGT 1e2wA 79 :EGF T0506 16 :I 1e2wA 83 :L T0506 18 :PSA 1e2wA 85 :PPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16804 # 1y6zA.12.4 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)R12 because first residue in template chain is (1y6zA)P3 Warning: unaligning (T0506)P18 (1y6zA)E9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1y6zA)S11 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKIE 1y6zA 4 :IWKQD T0506 19 :S 1y6zA 10 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=16806 # 1kqfA.12.863 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)T14 (1kqfA)V866 because D (zeta) conformation "forbidden" or filtered. T0506 12 :RG 1kqfA 864 :PN T0506 15 :KIEPSA 1kqfA 867 :VSNPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16808 # 1u02A.12.13 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)R12 (1u02A)P14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1u02A)I15 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKIEPSA 1u02A 16 :IMNPEES Number of specific fragments extracted= 1 number of extra gaps= 1 total=16809 # 1t77A.12.313 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)R12 (1t77A)S2389 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1t77A)A2397 because D (zeta) conformation "forbidden" or filtered. T0506 13 :GTKIEPS 1t77A 2390 :DVELPPW Number of specific fragments extracted= 1 number of extra gaps= 2 total=16810 # 1uxoA.12.108 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P18 (1uxoA)T113 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTKIE 1uxoA 107 :QMLDEF T0506 19 :SA 1uxoA 114 :QG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16812 # 1n93X.12.43 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)R12 (1n93X)G39 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1n93X)G40 because S (epsilon) conformation "forbidden" or filtered. T0506 14 :TKIEPSA 1n93X 41 :SDPHPGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=16813 # 1wpbA.12.96 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)K15 (1wpbA)F98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. T0506 12 :RGT 1wpbA 95 :RVT T0506 16 :I 1wpbA 99 :L T0506 19 :SA 1wpbA 102 :DA Number of specific fragments extracted= 3 number of extra gaps= 2 total=16816 # 1wraA.12.50 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)R12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)T81 T0506 13 :GT 1wraA 78 :GI T0506 17 :EPSA 1wraA 82 :SYKH Number of specific fragments extracted= 2 number of extra gaps= 2 total=16818 # 1aquA.12.259 read from T0506.t2k.many.frag # found chain 1aquA in training set Warning: unaligning (T0506)I16 (1aquA)G262 because T (delta_L) conformation "forbidden" or filtered. T0506 12 :RGTK 1aquA 258 :KGII T0506 17 :EPSA 1aquA 263 :DWKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=16820 # 1wolA.12.91 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)R12 (1wolA)G92 because S (epsilon) conformation "forbidden" or filtered. T0506 13 :GTKIEPSA 1wolA 93 :APYEYYTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=16821 # 1d9uA.12.127 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)R12 (1d9uA)P128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1d9uA)G131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1d9uA)Y132 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GT 1d9uA 129 :GA T0506 17 :EPSA 1d9uA 133 :GQFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=16823 # 1h5uA.12.515 read from T0506.t2k.many.frag # found chain 1h5uA in training set T0506 12 :RGTKIEPSA 1h5uA 516 :DQLRKLLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16824 # 1y0zA.12.266 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)K15 (1y0zA)T270 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGT 1y0zA 267 :KAV T0506 16 :IE 1y0zA 271 :FG T0506 19 :SA 1y0zA 274 :GK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16827 # 1noyA.12.51 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)R12 (1noyA)G52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1noyA)K53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1noyA)C55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1noyA)P57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1noyA)Q58 because E (beta_S) conformation "forbidden" or filtered. T0506 14 :T 1noyA 54 :N T0506 16 :I 1noyA 56 :A T0506 19 :SA 1noyA 59 :KF Number of specific fragments extracted= 3 number of extra gaps= 3 total=16830 # 1jkeA.12.86 read from T0506.t2k.many.frag # found chain 1jkeA in training set Warning: unaligning (T0506)P18 (1jkeA)F93 because D (zeta) conformation "forbidden" or filtered. T0506 12 :RGTKIE 1jkeA 87 :RGMRPS T0506 19 :SA 1jkeA 94 :SK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16832 1pi1A expands to /projects/compbio/data/pdb/1pi1.pdb.gz 1pi1A:# 1pi1A.12.98 read from T0506.t2k.many.frag # adding 1pi1A to template set # found chain 1pi1A in template set Warning: unaligning (T0506)I16 (1pi1A)S113 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTK 1pi1A 109 :TLFP T0506 17 :EPSA 1pi1A 114 :KIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16834 1ujcA expands to /projects/compbio/data/pdb/1ujc.pdb.gz 1ujcA:# 1ujcA.12.12 read from T0506.t2k.many.frag # adding 1ujcA to template set # found chain 1ujcA in template set T0506 12 :RGTKIEPSA 1ujcA 13 :LDAASDSVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=16835 # 2bvlA.12.327 read from T0506.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0506)I16 (2bvlA)S332 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTK 2bvlA 328 :PEYT T0506 17 :EPSA 2bvlA 333 :EHFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16837 1ik9C expands to /projects/compbio/data/pdb/1ik9.pdb.gz 1ik9C:# 1ik9C.12.11 read from T0506.t2k.many.frag # adding 1ik9C to template set # found chain 1ik9C in template set Warning: unaligning (T0506)K15 (1ik9C)G762 because T (delta_L) conformation "forbidden" or filtered. T0506 12 :RGT 1ik9C 759 :DCY T0506 16 :IEPSA 1ik9C 763 :DSYFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16839 # 1c1kA.12.34 read from T0506.t2k.many.frag # found chain 1c1kA in training set Warning: unaligning (T0506)I16 (1c1kA)Y39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1c1kA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1c1kA)W41 because L (left) conformation "forbidden" or filtered. T0506 12 :RGTK 1c1kA 35 :DVIK T0506 19 :SA 1c1kA 42 :CM Number of specific fragments extracted= 2 number of extra gaps= 1 total=16841 # 1dc1A.12.56 read from T0506.t2k.many.frag # found chain 1dc1A in training set T0506 12 :RGTKIEPSA 1dc1A 57 :KTPKDLLYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=16842 # 1r44A.12.144 read from T0506.t2k.many.frag # found chain 1r44A in template set Warning: unaligning (T0506)R12 (1r44A)D145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1r44A)A151 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1r44A)A152 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIE 1r44A 146 :ERSHH T0506 20 :A 1r44A 153 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=16844 # 1w33A.13.37 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G13 (1w33A)T107 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 1w33A 108 :FKVGPYDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=16845 # 1t8tA.13.230 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)I16 (1t8tA)G369 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1t8tA)E374 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTK 1t8tA 366 :KTK T0506 17 :EPSA 1t8tA 370 :RTHP Number of specific fragments extracted= 2 number of extra gaps= 2 total=16847 # 1dkiA.13.216 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)E17 (1dkiA)T103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1dkiA)G106 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1dkiA)R107 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKI 1dkiA 99 :NILP T0506 19 :S 1dkiA 105 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=16849 # 1ltzA.13.26 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)G21 (1ltzA)R35 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKIEPSA 1ltzA 27 :FTLPQPLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=16850 # 1e2wA.13.79 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)K15 (1e2wA)E82 because Y (epsilon') conformation "forbidden" or filtered. T0506 13 :GT 1e2wA 80 :GF T0506 16 :IEPSAG 1e2wA 83 :LAPPDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=16852 # 2f60K.13.29 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)K15 (2f60K)A151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (2f60K)T152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (2f60K)G153 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GT 2f60K 149 :GT T0506 18 :PSAG 2f60K 154 :PRGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16854 # 2fhpA.13.17 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIE 2fhpA 15 :ALDGD T0506 19 :SA 2fhpA 21 :TR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16856 # 1ji7A.13.6 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)E17 (1ji7A)Q25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1ji7A)W29 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKI 1ji7A 21 :HLRL T0506 18 :PSA 1ji7A 26 :PIY Number of specific fragments extracted= 2 number of extra gaps= 2 total=16858 # 1y0zA.13.267 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKIE 1y0zA 268 :AVTFG T0506 19 :SAG 1y0zA 274 :GKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16860 # 1y6zA.13.5 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)P18 (1y6zA)E9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1y6zA)L12 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIE 1y6zA 4 :IWKQD T0506 19 :SA 1y6zA 10 :KS Number of specific fragments extracted= 2 number of extra gaps= 2 total=16862 # 1u02A.13.14 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)G21 (1u02A)Y23 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIEPSA 1u02A 15 :IIMNPEES Number of specific fragments extracted= 1 number of extra gaps= 1 total=16863 # 1kqfA.13.864 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)G21 (1kqfA)R873 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIEPSA 1kqfA 865 :NVVSNPVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=16864 # 1aquA.13.260 read from T0506.t2k.many.frag # found chain 1aquA in training set Warning: unaligning (T0506)I16 (1aquA)G262 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1aquA)H267 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTK 1aquA 259 :GII T0506 17 :EPSA 1aquA 263 :DWKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=16866 # 1ik9C.13.12 read from T0506.t2k.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)A20 (1ik9C)I767 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIEPS 1ik9C 760 :CYGDSYF T0506 21 :G 1ik9C 768 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=16868 # 1ujcA.13.13 read from T0506.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)I16 (1ujcA)S17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1ujcA)P22 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTK 1ujcA 14 :DAA T0506 17 :EPSA 1ujcA 18 :DSVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=16870 # 1wpbA.13.97 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)G13 (1wpbA)V96 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. T0506 14 :TKI 1wpbA 97 :TFL T0506 19 :SAG 1wpbA 102 :DAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=16872 # 1t77A.13.314 read from T0506.t2k.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)E17 (1t77A)P2394 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKI 1t77A 2390 :DVEL T0506 18 :PSAG 1t77A 2395 :PWAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=16874 # 1uxoA.13.109 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P18 (1uxoA)T113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1uxoA)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1uxoA)S116 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIE 1uxoA 108 :MLDEF T0506 19 :S 1uxoA 114 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=16876 # 1pi1A.13.99 read from T0506.t2k.many.frag # found chain 1pi1A in template set Warning: unaligning (T0506)I16 (1pi1A)S113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1pi1A)V117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1pi1A)P118 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTK 1pi1A 110 :LFP T0506 17 :EPS 1pi1A 114 :KIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=16878 # 1n93X.13.44 read from T0506.t2k.many.frag # found chain 1n93X in training set T0506 13 :GTKIEPSAG 1n93X 40 :GSDPHPGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=16879 # 1d9uA.13.128 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)K15 (1d9uA)G131 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1d9uA)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1d9uA)E136 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GT 1d9uA 129 :GA T0506 16 :I 1d9uA 132 :Y T0506 18 :PS 1d9uA 134 :QF T0506 21 :G 1d9uA 137 :H Number of specific fragments extracted= 4 number of extra gaps= 3 total=16883 # 1c1kA.13.35 read from T0506.t2k.many.frag # found chain 1c1kA in training set Warning: unaligning (T0506)E17 (1c1kA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1c1kA)W41 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1c1kA)M43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1c1kA)R44 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKI 1c1kA 36 :VIKY T0506 19 :S 1c1kA 42 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=16885 # 1wraA.13.51 read from T0506.t2k.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)K15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 Warning: unaligning (T0506)I16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)T81 Warning: unaligning (T0506)A20 (1wraA)H85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1wraA)V86 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GT 1wraA 78 :GI T0506 17 :EPS 1wraA 82 :SYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=16887 # 1wolA.13.92 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)G13 (1wolA)A93 because N (gamma') conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 1wolA 94 :PYEYYTER Number of specific fragments extracted= 1 number of extra gaps= 1 total=16888 # 1iuqA.13.239 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)P18 (1iuqA)Y246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1iuqA)P249 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIE 1iuqA 241 :STGEW T0506 19 :SA 1iuqA 247 :PA Number of specific fragments extracted= 2 number of extra gaps= 2 total=16890 # 1h5uA.13.516 read from T0506.t2k.many.frag # found chain 1h5uA in training set T0506 13 :GTKIEPSAG 1h5uA 517 :QLRKLLSYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=16891 # 1jkeA.13.87 read from T0506.t2k.many.frag # found chain 1jkeA in training set Warning: unaligning (T0506)G13 (1jkeA)G88 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1jkeA)F93 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1jkeA)K95 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIE 1jkeA 89 :MRPS T0506 19 :S 1jkeA 94 :S T0506 21 :G 1jkeA 96 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=16894 # 1noyA.13.52 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)T14 (1noyA)N54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1noyA)Q58 because E (beta_S) conformation "forbidden" or filtered. T0506 13 :G 1noyA 53 :K T0506 15 :KIE 1noyA 55 :CAP T0506 19 :SAG 1noyA 59 :KFP Number of specific fragments extracted= 3 number of extra gaps= 2 total=16897 1kb9D expands to /projects/compbio/data/pdb/1kb9.pdb.gz 1kb9D:# 1kb9D.13.14 read from T0506.t2k.many.frag # adding 1kb9D to template set # found chain 1kb9D in template set T0506 13 :GTKIEPSAG 1kb9D 76 :WSHNGPFET Number of specific fragments extracted= 1 number of extra gaps= 0 total=16898 # 1dlwA.13.63 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)S19 (1dlwA)N70 because L (left) conformation "forbidden" or filtered. T0506 13 :GTKIEP 1dlwA 64 :LKEVHA T0506 20 :AG 1dlwA 71 :MG Number of specific fragments extracted= 2 number of extra gaps= 1 total=16900 # 1w33A.14.38 read from T0506.t2k.many.frag # found chain 1w33A in template set T0506 14 :TKIEPSAGA 1w33A 108 :FKVGPYDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=16901 # 1t8tA.14.231 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)I16 (1t8tA)G369 because T (delta_L) conformation "forbidden" or filtered. T0506 14 :TK 1t8tA 367 :TK T0506 17 :EPSAGA 1t8tA 370 :RTHPEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=16903 # 1dkiA.14.217 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)E17 (1dkiA)T103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1dkiA)G106 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1dkiA)R107 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKI 1dkiA 100 :ILP T0506 19 :S 1dkiA 105 :S T0506 22 :A 1dkiA 108 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=16906 # 1y0zA.14.268 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0506 14 :TKIE 1y0zA 269 :VTFG T0506 20 :AGA 1y0zA 275 :KPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=16908 # 1e2wA.14.80 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)K15 (1e2wA)E82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1e2wA)A84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1e2wA)R88 because G (3-10) conformation "forbidden" or filtered. T0506 14 :T 1e2wA 81 :F T0506 16 :I 1e2wA 83 :L T0506 18 :PSA 1e2wA 85 :PPD T0506 22 :A 1e2wA 89 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=16912 # 1ltzA.14.27 read from T0506.t2k.many.frag # found chain 1ltzA in training set T0506 14 :TKIEPSAGA 1ltzA 28 :TLPQPLDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=16913 # 2fhpA.14.18 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (2fhpA)T21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKIE 2fhpA 16 :LDGD T0506 20 :A 2fhpA 22 :R T0506 22 :A 2fhpA 24 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=16916 # 2f60K.14.30 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)S19 (2f60K)R155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (2f60K)G156 because T (delta_L) conformation "forbidden" or filtered. T0506 14 :TKIEP 2f60K 150 :TATGP T0506 21 :GA 2f60K 157 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16918 # 1oohA.14.33 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)K15 (1oohA)V33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1oohA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1oohA)F36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1oohA)F38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1oohA)P40 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :T 1oohA 32 :R T0506 17 :E 1oohA 35 :D T0506 19 :S 1oohA 37 :N T0506 21 :G 1oohA 39 :P Number of specific fragments extracted= 4 number of extra gaps= 4 total=16922 # 1ji7A.14.7 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)E17 (1ji7A)Q25 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKI 1ji7A 22 :LRL T0506 18 :PSAGA 1ji7A 26 :PIYWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=16924 # 1ujcA.14.14 read from T0506.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)I16 (1ujcA)S17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1ujcA)P22 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TK 1ujcA 15 :AA T0506 17 :EPSA 1ujcA 18 :DSVR T0506 22 :A 1ujcA 23 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=16927 # 1ik9C.14.13 read from T0506.t2k.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)K15 (1ik9C)G762 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1ik9C)S764 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ik9C)T769 because Y (epsilon') conformation "forbidden" or filtered. T0506 14 :T 1ik9C 761 :Y T0506 16 :I 1ik9C 763 :D T0506 18 :PSAG 1ik9C 765 :YFID Number of specific fragments extracted= 3 number of extra gaps= 3 total=16930 # 1u02A.14.15 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)A20 (1u02A)S22 because N (gamma') conformation "forbidden" or filtered. T0506 14 :TKIEPS 1u02A 16 :IMNPEE T0506 21 :GA 1u02A 23 :YA Number of specific fragments extracted= 2 number of extra gaps= 1 total=16932 # 1y6zA.14.6 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)P18 (1y6zA)E9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1y6zA)L12 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKIE 1y6zA 5 :WKQD T0506 19 :SA 1y6zA 10 :KS T0506 22 :A 1y6zA 13 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=16935 # 1pi1A.14.100 read from T0506.t2k.many.frag # found chain 1pi1A in template set T0506 14 :TKIEPSAGA 1pi1A 111 :FPSKIGVPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=16936 # 1aquA.14.261 read from T0506.t2k.many.frag # found chain 1aquA in training set Warning: unaligning (T0506)G21 (1aquA)H267 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIEPSA 1aquA 260 :IIGDWKN T0506 22 :A 1aquA 268 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=16938 # 1iuqA.14.240 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)K15 (1iuqA)G243 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1iuqA)Y246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1iuqA)P249 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :T 1iuqA 242 :T T0506 16 :IE 1iuqA 244 :EW T0506 19 :SA 1iuqA 247 :PA T0506 22 :A 1iuqA 250 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=16942 # 1wpbA.14.98 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)E17 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. T0506 14 :TKI 1wpbA 97 :TFL T0506 19 :SAGA 1wpbA 102 :DAAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16944 # 1dlwA.14.64 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)S19 (1dlwA)N70 because L (left) conformation "forbidden" or filtered. T0506 14 :TKIEP 1dlwA 65 :KEVHA T0506 20 :AGA 1dlwA 71 :MGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16946 # 1c1kA.14.36 read from T0506.t2k.many.frag # found chain 1c1kA in training set Warning: unaligning (T0506)E17 (1c1kA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1c1kA)W41 because L (left) conformation "forbidden" or filtered. T0506 14 :TKI 1c1kA 37 :IKY T0506 19 :SAGA 1c1kA 42 :CMRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=16948 # 1kb9D.14.15 read from T0506.t2k.many.frag # found chain 1kb9D in template set Warning: unaligning (T0506)E17 (1kb9D)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 14 :TKI 1kb9D 77 :SHN T0506 18 :PSAGA 1kb9D 81 :PFETF Number of specific fragments extracted= 2 number of extra gaps= 1 total=16950 # 1uxoA.14.110 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P18 (1uxoA)T113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1uxoA)G115 because S (epsilon) conformation "forbidden" or filtered. T0506 14 :TKIE 1uxoA 109 :LDEF T0506 19 :S 1uxoA 114 :Q T0506 21 :GA 1uxoA 116 :SF Number of specific fragments extracted= 3 number of extra gaps= 2 total=16953 # 1y0zA.14.194 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)F199 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)L200 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1y0zA)H202 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIE 1y0zA 195 :WKST T0506 20 :A 1y0zA 201 :T T0506 22 :A 1y0zA 203 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=16956 # 1t77A.14.315 read from T0506.t2k.many.frag # found chain 1t77A in template set T0506 14 :TKIEPSAGA 1t77A 2391 :VELPPWAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=16957 # 1wolA.14.56 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)A20 (1wolA)T63 because D (zeta) conformation "forbidden" or filtered. T0506 14 :TKIEPS 1wolA 57 :SISHLL T0506 21 :GA 1wolA 64 :NP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16959 # 1kqfA.14.865 read from T0506.t2k.many.frag # found chain 1kqfA in training set Warning: unaligning (T0506)A22 (1kqfA)L874 because D (zeta) conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 1kqfA 866 :VVSNPVVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=16960 1yvhA expands to /projects/compbio/data/pdb/1yvh.pdb.gz 1yvhA:# 1yvhA.14.151 read from T0506.t2k.many.frag # adding 1yvhA to template set # found chain 1yvhA in template set Warning: unaligning (T0506)P18 (1yvhA)T178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1yvhA)I181 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKIE 1yvhA 174 :FQGD T0506 19 :SA 1yvhA 179 :FR T0506 22 :A 1yvhA 182 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=16963 # 1noyA.14.53 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)K15 (1noyA)C55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1noyA)P57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1noyA)Q58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1noyA)S62 because Y (epsilon') conformation "forbidden" or filtered. T0506 14 :T 1noyA 54 :N T0506 16 :I 1noyA 56 :A T0506 19 :SAG 1noyA 59 :KFP Number of specific fragments extracted= 3 number of extra gaps= 3 total=16966 # 1n93X.14.45 read from T0506.t2k.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)S19 (1n93X)G46 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1n93X)I47 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIEP 1n93X 41 :SDPHP T0506 21 :GA 1n93X 48 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=16968 # 1d9uA.14.129 read from T0506.t2k.many.frag # found chain 1d9uA in template set Warning: unaligning (T0506)E17 (1d9uA)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1d9uA)F135 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKI 1d9uA 130 :AGY T0506 18 :P 1d9uA 134 :Q T0506 20 :AGA 1d9uA 136 :EHK Number of specific fragments extracted= 3 number of extra gaps= 2 total=16971 # 1w33A.15.39 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G21 (1w33A)L115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPSA 1w33A 109 :KVGPYD T0506 22 :A 1w33A 116 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=16973 # 1t8tA.15.232 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)I16 (1t8tA)G369 because T (delta_L) conformation "forbidden" or filtered. T0506 15 :K 1t8tA 368 :K T0506 17 :EPSAGAP 1t8tA 370 :RTHPEID Number of specific fragments extracted= 2 number of extra gaps= 1 total=16975 # 1y0zA.15.269 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)K15 (1y0zA)T270 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)G274 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1y0zA)P276 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IE 1y0zA 271 :FG T0506 20 :A 1y0zA 275 :K T0506 22 :AP 1y0zA 277 :LP Number of specific fragments extracted= 3 number of extra gaps= 3 total=16978 # 1dkiA.15.218 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)K15 (1dkiA)L101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IE 1dkiA 102 :PT T0506 19 :SAGAP 1dkiA 105 :SGRES Number of specific fragments extracted= 2 number of extra gaps= 2 total=16980 # 1oohA.15.34 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)I16 (1oohA)G34 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1oohA)F36 because G (3-10) conformation "forbidden" or filtered. T0506 15 :K 1oohA 33 :V T0506 17 :E 1oohA 35 :D T0506 19 :SAGAP 1oohA 37 :NFPPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=16983 # 1e2wA.15.81 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)G21 (1e2wA)R88 because G (3-10) conformation "forbidden" or filtered. T0506 15 :KIEPSA 1e2wA 82 :ELAPPD T0506 22 :AP 1e2wA 89 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=16985 # 2fhpA.15.19 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. T0506 15 :KIE 2fhpA 17 :DGD T0506 19 :SAGAP 2fhpA 21 :TRPTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=16987 # 1ujcA.15.15 read from T0506.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)G21 (1ujcA)P22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ujcA)L23 because P (beta_P) conformation "forbidden" or filtered. T0506 15 :KIEPSA 1ujcA 16 :ASDSVR T0506 23 :P 1ujcA 24 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=16989 # 1ltzA.15.28 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)K15 (1ltzA)L29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1ltzA)Q31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1ltzA)R35 because G (3-10) conformation "forbidden" or filtered. T0506 16 :I 1ltzA 30 :P T0506 18 :PSA 1ltzA 32 :PLD T0506 22 :AP 1ltzA 36 :YS Number of specific fragments extracted= 3 number of extra gaps= 3 total=16992 # 1u02A.15.16 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)S19 (1u02A)E21 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1u02A)Y23 because P (beta_P) conformation "forbidden" or filtered. T0506 15 :KIEP 1u02A 17 :MNPE T0506 20 :A 1u02A 22 :S T0506 22 :AP 1u02A 24 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=16995 # 1wolA.15.57 read from T0506.t2k.many.frag # found chain 1wolA in template set T0506 15 :KIEPSAGAP 1wolA 58 :ISHLLTNPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=16996 # 1ik9C.15.14 read from T0506.t2k.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)K15 (1ik9C)G762 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1ik9C)D768 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ik9C)T769 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1ik9C)D770 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :IEPSA 1ik9C 763 :DSYFI Number of specific fragments extracted= 1 number of extra gaps= 2 total=16997 # 1iuqA.15.241 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)P18 (1iuqA)Y246 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIE 1iuqA 243 :GEW T0506 19 :SAGAP 1iuqA 247 :PAPFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=16999 # 2f60K.15.31 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)E17 (2f60K)G153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (2f60K)R155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (2f60K)G156 because T (delta_L) conformation "forbidden" or filtered. T0506 15 :KI 2f60K 151 :AT T0506 18 :P 2f60K 154 :P T0506 21 :GAP 2f60K 157 :IFT Number of specific fragments extracted= 3 number of extra gaps= 2 total=17002 # 1ji7A.15.8 read from T0506.t2k.many.frag # found chain 1ji7A in training set T0506 15 :KIEPSAGAP 1ji7A 23 :RLQPIYWSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17003 # 1y6zA.15.7 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)P18 (1y6zA)E9 because G (3-10) conformation "forbidden" or filtered. T0506 15 :KIE 1y6zA 6 :KQD T0506 19 :SAGAP 1y6zA 10 :KSLTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17005 # 1pi1A.15.101 read from T0506.t2k.many.frag # found chain 1pi1A in template set Warning: unaligning (T0506)K15 (1pi1A)P112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1pi1A)S113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1pi1A)P118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1pi1A)F119 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPSA 1pi1A 114 :KIGV T0506 23 :P 1pi1A 120 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=17007 # 1y0zA.15.195 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)F199 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)L200 because L (left) conformation "forbidden" or filtered. T0506 15 :KIE 1y0zA 196 :KST T0506 20 :AGAP 1y0zA 201 :THDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17009 # 1aquA.15.262 read from T0506.t2k.many.frag # found chain 1aquA in training set Warning: unaligning (T0506)I16 (1aquA)G262 because T (delta_L) conformation "forbidden" or filtered. T0506 15 :K 1aquA 261 :I T0506 17 :EPSAGAP 1aquA 263 :DWKNHFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17011 1dg9A expands to /projects/compbio/data/pdb/1dg9.pdb.gz 1dg9A:# 1dg9A.15.47 read from T0506.t2k.many.frag # adding 1dg9A to template set # found chain 1dg9A in template set Warning: unaligning (T0506)K15 (1dg9A)D48 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1dg9A)S54 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSA 1dg9A 49 :WNVGR T0506 22 :AP 1dg9A 55 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=17013 # 1wpbA.15.99 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1wpbA)E106 because D (zeta) conformation "forbidden" or filtered. T0506 15 :KIE 1wpbA 98 :FLG T0506 19 :SAGA 1wpbA 102 :DAAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=17015 # 1kb9D.15.16 read from T0506.t2k.many.frag # found chain 1kb9D in template set Warning: unaligning (T0506)S19 (1kb9D)F82 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1kb9D)T84 because P (beta_P) conformation "forbidden" or filtered. T0506 15 :KIEP 1kb9D 78 :HNGP T0506 20 :A 1kb9D 83 :E T0506 22 :AP 1kb9D 85 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17018 # 1dlwA.15.65 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)S19 (1dlwA)N70 because L (left) conformation "forbidden" or filtered. T0506 15 :KIEP 1dlwA 66 :EVHA T0506 20 :AGAP 1dlwA 71 :MGVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17020 1p0yA expands to /projects/compbio/data/pdb/1p0y.pdb.gz 1p0yA:# 1p0yA.15.155 read from T0506.t2k.many.frag # adding 1p0yA to template set # found chain 1p0yA in template set Warning: unaligning (T0506)P18 (1p0yA)F203 because D (zeta) conformation "forbidden" or filtered. T0506 15 :KIE 1p0yA 200 :KRL T0506 19 :SAGAP 1p0yA 204 :PDPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17022 # 1uxoA.15.111 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P18 (1uxoA)T113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1uxoA)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1uxoA)S116 because P (beta_P) conformation "forbidden" or filtered. T0506 15 :KIE 1uxoA 110 :DEF T0506 19 :S 1uxoA 114 :Q T0506 22 :AP 1uxoA 117 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17025 # 1c1kA.15.37 read from T0506.t2k.many.frag # found chain 1c1kA in training set Warning: unaligning (T0506)E17 (1c1kA)N40 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1c1kA)W41 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1c1kA)M43 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KI 1c1kA 38 :KY T0506 19 :S 1c1kA 42 :C T0506 21 :GAP 1c1kA 44 :RVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=17028 1pq4A expands to /projects/compbio/data/pdb/1pq4.pdb.gz 1pq4A:# 1pq4A.15.33 read from T0506.t2k.many.frag # adding 1pq4A to template set # found chain 1pq4A in template set Warning: unaligning (T0506)G21 (1pq4A)E86 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPSA 1pq4A 80 :NDPHTY T0506 22 :AP 1pq4A 87 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17030 2fnaA expands to /projects/compbio/data/pdb/2fna.pdb.gz 2fnaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 2fnaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1457, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1461, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1463, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1465, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1467, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1469, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1471, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1473, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1507, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1511, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1725, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2110, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2114, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2116, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2118, because occupancy 0.500 <= existing 0.500 in 2fnaA Skipped atom 2120, because occupancy 0.500 <= existing 0.500 in 2fnaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2fnaA.15.112 read from T0506.t2k.many.frag # adding 2fnaA to template set # found chain 2fnaA in template set Warning: unaligning (T0506)E17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fnaA)R120 Warning: unaligning (T0506)P23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fnaA)R120 T0506 15 :KI 2fnaA 112 :KF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17031 1aep expands to /projects/compbio/data/pdb/1aep.pdb.gz 1aep:Warning: there is no chain 1aep will retry with 1aepA # 1aep.15.25 read from T0506.t2k.many.frag # adding 1aep to template set # found chain 1aep in template set T0506 15 :KIEPSAGAP 1aep 26 :HETLGLPTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17032 # 1kaeA.15.20 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 15 :KIEPSAGAP 1kaeA 21 :LMRPAISAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17033 # 1w33A.16.40 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G21 (1w33A)L115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IEPSA 1w33A 110 :VGPYD T0506 22 :A 1w33A 116 :I T0506 24 :F 1w33A 118 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=17036 # 1oohA.16.35 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)E17 (1oohA)D35 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1oohA)F36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1oohA)F38 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :I 1oohA 34 :G T0506 19 :S 1oohA 37 :N T0506 21 :GAPF 1oohA 39 :PPSQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=17039 # 1t8tA.16.233 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)I16 (1t8tA)G369 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1t8tA)P373 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPS 1t8tA 370 :RTH T0506 21 :GAPF 1t8tA 374 :EIDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=17041 # 1u02A.16.17 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)A22 (1u02A)A24 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSAG 1u02A 18 :NPEESY T0506 23 :PF 1u02A 25 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17043 # 1ujcA.16.16 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 16 :IEPSAGAPF 1ujcA 17 :SDSVRPLTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17044 # 1y0zA.16.270 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0506 16 :IE 1y0zA 271 :FG T0506 20 :AGAPF 1y0zA 275 :KPLPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17046 # 2fhpA.16.20 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IE 2fhpA 18 :GD T0506 19 :SA 2fhpA 21 :TR T0506 22 :APF 2fhpA 24 :TTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17049 # 1dkiA.16.219 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)E17 (1dkiA)T103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1dkiA)R107 because G (3-10) conformation "forbidden" or filtered. T0506 16 :I 1dkiA 102 :P T0506 19 :SA 1dkiA 105 :SG T0506 22 :APF 1dkiA 108 :ESN Number of specific fragments extracted= 3 number of extra gaps= 2 total=17052 # 1wolA.16.58 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)A20 (1wolA)T63 because D (zeta) conformation "forbidden" or filtered. T0506 16 :IEPS 1wolA 59 :SHLL T0506 21 :GAPF 1wolA 64 :NPPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17054 # 1e2wA.16.82 read from T0506.t2k.many.frag # found chain 1e2wA in training set T0506 16 :IEPSAGAPF 1e2wA 83 :LAPPDRVPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17055 # 1iuqA.16.242 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)P18 (1iuqA)Y246 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IE 1iuqA 244 :EW T0506 19 :SAGAPF 1iuqA 247 :PAPFDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17057 # 1ltzA.16.29 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)E17 (1ltzA)Q31 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :I 1ltzA 30 :P T0506 18 :PSAGAPF 1ltzA 32 :PLDRYSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17059 # 1ik9C.16.15 read from T0506.t2k.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)P23 (1ik9C)D770 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :IEPSAGA 1ik9C 763 :DSYFIDT T0506 24 :F 1ik9C 771 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17061 # 1dg9A.16.48 read from T0506.t2k.many.frag # found chain 1dg9A in template set T0506 16 :IEPSAGAPF 1dg9A 49 :WNVGRSPDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17062 # 1ji7A.16.9 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)G21 (1ji7A)W29 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSA 1ji7A 24 :LQPIY T0506 22 :APF 1ji7A 30 :SRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17064 # 2f60K.16.32 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)S19 (2f60K)R155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2f60K)I157 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEP 2f60K 152 :TGP T0506 20 :A 2f60K 156 :G T0506 22 :APF 2f60K 158 :FTK Number of specific fragments extracted= 3 number of extra gaps= 2 total=17067 # 1p0yA.16.156 read from T0506.t2k.many.frag # found chain 1p0yA in template set Warning: unaligning (T0506)P18 (1p0yA)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1p0yA)P206 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IE 1p0yA 201 :RL T0506 19 :SA 1p0yA 204 :PD T0506 22 :APF 1p0yA 207 :VTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=17070 # 1aep.16.26 read from T0506.t2k.many.frag # found chain 1aep in template set Warning: unaligning (T0506)I16 (1aep)E27 because G (3-10) conformation "forbidden" or filtered. T0506 17 :EPSAGAPF 1aep 28 :TLGLPTPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17071 # 1pq4A.16.34 read from T0506.t2k.many.frag # found chain 1pq4A in template set Warning: unaligning (T0506)G21 (1pq4A)E86 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IEPSA 1pq4A 81 :DPHTY T0506 22 :APF 1pq4A 87 :PKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17073 1q0uA expands to /projects/compbio/data/pdb/1q0u.pdb.gz 1q0uA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1q0uA.16.4 read from T0506.t2k.many.frag # adding 1q0uA to template set # found chain 1q0uA in template set Warning: unaligning (T0506)I16 (1q0uA)Q5 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1q0uA)P10 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1q0uA)F11 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPSA 1q0uA 6 :FTRF T0506 23 :PF 1q0uA 12 :QP Number of specific fragments extracted= 2 number of extra gaps= 2 total=17075 # 1y0zA.16.196 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)F199 because G (3-10) conformation "forbidden" or filtered. T0506 16 :IE 1y0zA 197 :ST T0506 19 :SAGAPF 1y0zA 200 :LTHDKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17077 # 1y6zA.16.8 read from T0506.t2k.many.frag # found chain 1y6zA in template set Warning: unaligning (T0506)P18 (1y6zA)E9 because G (3-10) conformation "forbidden" or filtered. T0506 16 :IE 1y6zA 7 :QD T0506 19 :SAGAPF 1y6zA 10 :KSLTEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17079 # 1kb9D.16.17 read from T0506.t2k.many.frag # found chain 1kb9D in template set Warning: unaligning (T0506)E17 (1kb9D)G80 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1kb9D)T84 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :I 1kb9D 79 :N T0506 18 :PSA 1kb9D 81 :PFE T0506 22 :APF 1kb9D 85 :FDH Number of specific fragments extracted= 3 number of extra gaps= 2 total=17082 # 1pi1A.16.102 read from T0506.t2k.many.frag # found chain 1pi1A in template set Warning: unaligning (T0506)I16 (1pi1A)S113 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1pi1A)P118 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPSA 1pi1A 114 :KIGV T0506 22 :APF 1pi1A 119 :FPK Number of specific fragments extracted= 2 number of extra gaps= 2 total=17084 # 1aquA.16.263 read from T0506.t2k.many.frag # found chain 1aquA in training set Warning: unaligning (T0506)I16 (1aquA)G262 because T (delta_L) conformation "forbidden" or filtered. T0506 17 :EPSAGAPF 1aquA 263 :DWKNHFPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17085 # 1kaeA.16.21 read from T0506.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)A20 (1kaeA)I26 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1kaeA)S27 because G (3-10) conformation "forbidden" or filtered. T0506 16 :IEPS 1kaeA 22 :MRPA T0506 22 :APF 1kaeA 28 :ASE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17087 # 1wpbA.16.100 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1wpbA)E106 because D (zeta) conformation "forbidden" or filtered. T0506 16 :IE 1wpbA 99 :LG T0506 19 :SAGA 1wpbA 102 :DAAT T0506 24 :F 1wpbA 107 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=17090 # 1yvhA.16.153 read from T0506.t2k.many.frag # found chain 1yvhA in template set Warning: unaligning (T0506)P18 (1yvhA)T178 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1yvhA)I181 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IE 1yvhA 176 :GD T0506 19 :SA 1yvhA 179 :FR T0506 22 :APF 1yvhA 182 :TKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=17093 # 2bvlA.16.331 read from T0506.t2k.many.frag # found chain 2bvlA in template set T0506 16 :IEPSAGAPF 2bvlA 332 :SEHFDMLDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17094 # 1dlwA.16.66 read from T0506.t2k.many.frag # found chain 1dlwA in training set Warning: unaligning (T0506)A22 (1dlwA)V73 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSAG 1dlwA 67 :VHANMG T0506 23 :PF 1dlwA 74 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17096 # 1w33A.17.41 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G21 (1w33A)L115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 17 :EPSA 1w33A 111 :GPYD T0506 22 :A 1w33A 116 :I T0506 24 :FE 1w33A 118 :ED Number of specific fragments extracted= 3 number of extra gaps= 2 total=17099 # 1u02A.17.18 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)A22 (1u02A)A24 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPSAG 1u02A 19 :PEESY T0506 23 :PFE 1u02A 25 :DAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17101 # 1oohA.17.36 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)E17 (1oohA)D35 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1oohA)F36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1oohA)F38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1oohA)P39 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1oohA 37 :N T0506 22 :APFE 1oohA 40 :PSQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=17103 # 1wolA.17.59 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)A20 (1wolA)T63 because D (zeta) conformation "forbidden" or filtered. T0506 17 :EPS 1wolA 60 :HLL T0506 21 :GAPFE 1wolA 64 :NPPAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17105 # 1ujcA.17.17 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 17 :EPSAGAPFE 1ujcA 18 :DSVRPLTTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17106 # 1iuqA.17.243 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)P18 (1iuqA)Y246 because E (beta_S) conformation "forbidden" or filtered. T0506 17 :E 1iuqA 245 :W T0506 19 :SAGAPFE 1iuqA 247 :PAPFDAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17108 # 1ltzA.17.30 read from T0506.t2k.many.frag # found chain 1ltzA in training set T0506 17 :EPSAGAPFE 1ltzA 31 :QPLDRYSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17109 # 2fhpA.17.21 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2fhpA)T24 because D (zeta) conformation "forbidden" or filtered. T0506 17 :E 2fhpA 19 :D T0506 19 :SA 2fhpA 21 :TR T0506 23 :PFE 2fhpA 25 :TDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=17112 # 1dkiA.17.220 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)E17 (1dkiA)T103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1dkiA)G106 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1dkiA)R107 because G (3-10) conformation "forbidden" or filtered. T0506 19 :S 1dkiA 105 :S T0506 22 :APFE 1dkiA 108 :ESNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=17114 # 1y0zA.17.271 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0506 17 :E 1y0zA 272 :G T0506 20 :AGAPFE 1y0zA 275 :KPLPAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17116 # 1e2wA.17.83 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)E17 (1e2wA)A84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1e2wA)R88 because G (3-10) conformation "forbidden" or filtered. T0506 18 :PSA 1e2wA 85 :PPD T0506 22 :APFE 1e2wA 89 :VPAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=17118 # 1t8tA.17.234 read from T0506.t2k.many.frag # found chain 1t8tA in template set Warning: unaligning (T0506)G21 (1t8tA)E374 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPSA 1t8tA 370 :RTHP T0506 22 :APFE 1t8tA 375 :IDRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17120 # 1dg9A.17.49 read from T0506.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0506)G21 (1dg9A)S54 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPSA 1dg9A 50 :NVGR T0506 22 :APFE 1dg9A 55 :PDPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=17122 # 1p0yA.17.157 read from T0506.t2k.many.frag # found chain 1p0yA in template set Warning: unaligning (T0506)P18 (1p0yA)F203 because D (zeta) conformation "forbidden" or filtered. T0506 17 :E 1p0yA 202 :L T0506 19 :SAGAPFE 1p0yA 204 :PDPVTLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17124 # 1ik9C.17.16 read from T0506.t2k.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)A22 (1ik9C)T769 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1ik9C)D770 because Y (epsilon') conformation "forbidden" or filtered. T0506 17 :EPSAG 1ik9C 764 :SYFID T0506 24 :FE 1ik9C 771 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17126 # 1ji7A.17.10 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)E17 (1ji7A)Q25 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSAGAPFE 1ji7A 26 :PIYWSRDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17127 # 1aep.17.27 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 17 :EPSAGAPFE 1aep 28 :TLGLPTPDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17128 # 1pq4A.17.35 read from T0506.t2k.many.frag # found chain 1pq4A in template set Warning: unaligning (T0506)A20 (1pq4A)Y85 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPS 1pq4A 82 :PHT T0506 21 :GAPFE 1pq4A 86 :EPKPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17130 # 2f60K.17.33 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)E17 (2f60K)G153 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (2f60K)R155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (2f60K)G156 because T (delta_L) conformation "forbidden" or filtered. T0506 18 :P 2f60K 154 :P T0506 21 :GAPFE 2f60K 157 :IFTKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=17132 # 1wpbA.17.101 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)E17 (1wpbA)G100 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1wpbA)E106 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SAGA 1wpbA 102 :DAAT T0506 24 :FE 1wpbA 107 :AR Number of specific fragments extracted= 2 number of extra gaps= 2 total=17134 1t3tA expands to /projects/compbio/data/pdb/1t3t.pdb.gz 1t3tA:Bad short name: N1 for alphabet: pdb_atoms Bad short name: CA1 for alphabet: pdb_atoms Bad short name: CB1 for alphabet: pdb_atoms Bad short name: C1 for alphabet: pdb_atoms Bad short name: O1 for alphabet: pdb_atoms Bad short name: O2 for alphabet: pdb_atoms # 1t3tA.17.49 read from T0506.t2k.many.frag # adding 1t3tA to template set # found chain 1t3tA in template set Warning: unaligning (T0506)P18 (1t3tA)L43 because E (beta_S) conformation "forbidden" or filtered. T0506 17 :E 1t3tA 42 :D T0506 19 :SAGAPFE 1t3tA 44 :NAPLNDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17136 # 2bvlA.17.332 read from T0506.t2k.many.frag # found chain 2bvlA in template set T0506 17 :EPSAGAPFE 2bvlA 333 :EHFDMLDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17137 # 1kb9D.17.18 read from T0506.t2k.many.frag # found chain 1kb9D in template set T0506 17 :EPSAGAPFE 1kb9D 80 :GPFETFDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17138 1hufA expands to /projects/compbio/data/pdb/1huf.pdb.gz 1hufA:# 1hufA.17.47 read from T0506.t2k.many.frag # adding 1hufA to template set # found chain 1hufA in template set T0506 17 :EPSAGAPFE 1hufA 43 :TIASGARES Number of specific fragments extracted= 1 number of extra gaps= 0 total=17139 # 1q0uA.17.5 read from T0506.t2k.many.frag # found chain 1q0uA in template set Warning: unaligning (T0506)G21 (1q0uA)P10 because N (gamma') conformation "forbidden" or filtered. T0506 17 :EPSA 1q0uA 6 :FTRF T0506 22 :APFE 1q0uA 11 :FQPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=17141 # 1kaeA.17.22 read from T0506.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)A22 (1kaeA)A28 because L (left) conformation "forbidden" or filtered. T0506 17 :EPSAG 1kaeA 23 :RPAIS T0506 23 :PFE 1kaeA 29 :SES Number of specific fragments extracted= 2 number of extra gaps= 1 total=17143 # 1noyA.17.56 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)P18 (1noyA)Q58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1noyA)K59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1noyA)S62 because Y (epsilon') conformation "forbidden" or filtered. T0506 17 :E 1noyA 57 :P T0506 20 :AG 1noyA 60 :FP T0506 23 :PFE 1noyA 63 :MKD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17146 1w6kA expands to /projects/compbio/data/pdb/1w6k.pdb.gz 1w6kA:# 1w6kA.17.472 read from T0506.t2k.many.frag # adding 1w6kA to template set # found chain 1w6kA in template set Warning: unaligning (T0506)A20 (1w6kA)E476 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1w6kA)H477 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPS 1w6kA 473 :HVT T0506 22 :APFE 1w6kA 478 :IPRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17148 # 1yvhA.17.154 read from T0506.t2k.many.frag # found chain 1yvhA in template set Warning: unaligning (T0506)P18 (1yvhA)T178 because G (3-10) conformation "forbidden" or filtered. T0506 17 :E 1yvhA 177 :D T0506 19 :SAGAPFE 1yvhA 179 :FRITKAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17150 2aeuA expands to /projects/compbio/data/pdb/2aeu.pdb.gz 2aeuA:Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1319, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1321, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1323, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1325, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1327, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1329, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1331, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1333, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1335, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1337, because occupancy 0.500 <= existing 0.500 in 2aeuA Skipped atom 1339, because occupancy 0.500 <= existing 0.500 in 2aeuA # 2aeuA.17.104 read from T0506.t2k.many.frag # adding 2aeuA to template set # found chain 2aeuA in template set Warning: unaligning (T0506)G21 (2aeuA)P109 because C (cis) conformation "forbidden" or filtered. T0506 17 :EPSA 2aeuA 105 :LPEL T0506 22 :APFE 2aeuA 110 :GHPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17152 # 1w33A.18.42 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G21 (1w33A)L115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1w33A)I116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 18 :PSA 1w33A 112 :PYD T0506 24 :FEA 1w33A 118 :EDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17154 # 1u02A.18.19 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)G21 (1u02A)Y23 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1u02A 20 :EES T0506 22 :APFEA 1u02A 24 :ADAGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17156 # 1oohA.18.37 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)P18 (1oohA)F36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1oohA)F38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1oohA)P39 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1oohA 37 :N T0506 22 :APFEA 1oohA 40 :PSQDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=17158 # 1ujcA.18.18 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 18 :PSAGAPFEA 1ujcA 19 :SVRPLTTNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17159 # 1ltzA.18.31 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)G21 (1ltzA)R35 because G (3-10) conformation "forbidden" or filtered. T0506 18 :PSA 1ltzA 32 :PLD T0506 22 :APFEA 1ltzA 36 :YSAED Number of specific fragments extracted= 2 number of extra gaps= 1 total=17161 # 1iuqA.18.244 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)P18 (1iuqA)Y246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1iuqA)A248 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1iuqA 247 :P T0506 21 :GAPFEA 1iuqA 249 :PFDASS Number of specific fragments extracted= 2 number of extra gaps= 2 total=17163 # 1wolA.18.60 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)A20 (1wolA)T63 because D (zeta) conformation "forbidden" or filtered. T0506 18 :PS 1wolA 61 :LL T0506 21 :GAPFEA 1wolA 64 :NPPADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17165 # 2fhpA.18.22 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2fhpA)T24 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SA 2fhpA 21 :TR T0506 23 :PFEA 2fhpA 25 :TDKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=17167 # 1dg9A.18.50 read from T0506.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0506)G21 (1dg9A)S54 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1dg9A 51 :VGR T0506 22 :APFEA 1dg9A 55 :PDPRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17169 # 1e2wA.18.84 read from T0506.t2k.many.frag # found chain 1e2wA in training set T0506 18 :PSAGAPFEA 1e2wA 85 :PPDRVPAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17170 # 1dkiA.18.221 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)P18 (1dkiA)Y104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1dkiA)R107 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SA 1dkiA 105 :SG T0506 22 :APFEA 1dkiA 108 :ESNVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=17172 # 1y0zA.18.272 read from T0506.t2k.many.frag # found chain 1y0zA in template set Warning: unaligning (T0506)P18 (1y0zA)D273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1y0zA)G274 because T (delta_L) conformation "forbidden" or filtered. T0506 20 :AGAPFEA 1y0zA 275 :KPLPADI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17173 # 1p0yA.18.158 read from T0506.t2k.many.frag # found chain 1p0yA in template set Warning: unaligning (T0506)P18 (1p0yA)F203 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1p0yA)P206 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1p0yA 204 :PD T0506 22 :APFEA 1p0yA 207 :VTLDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=17175 # 1yvhA.18.155 read from T0506.t2k.many.frag # found chain 1yvhA in template set Warning: unaligning (T0506)P18 (1yvhA)T178 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SAGAPFEA 1yvhA 179 :FRITKADA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17176 # 1ji7A.18.11 read from T0506.t2k.many.frag # found chain 1ji7A in training set Warning: unaligning (T0506)G21 (1ji7A)W29 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1ji7A 26 :PIY T0506 22 :APFEA 1ji7A 30 :SRDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17178 # 1t8tA.18.235 read from T0506.t2k.many.frag # found chain 1t8tA in template set T0506 18 :PSAGAPFEA 1t8tA 371 :THPEIDREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17179 # 1aep.18.28 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 18 :PSAGAPFEA 1aep 29 :LGLPTPDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17180 # 1hufA.18.48 read from T0506.t2k.many.frag # found chain 1hufA in template set T0506 18 :PSAGAPFEA 1hufA 44 :IASGARESE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17181 # 1wpbA.18.102 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P18 (1wpbA)F101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1wpbA)D102 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1wpbA)T105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1wpbA)E106 because D (zeta) conformation "forbidden" or filtered. T0506 20 :AG 1wpbA 103 :AA T0506 24 :FEA 1wpbA 107 :ARY Number of specific fragments extracted= 2 number of extra gaps= 2 total=17183 # 2bg5A.18.223 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 18 :PSAGAPFEA 2bg5A 473 :YYQPFHPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17184 # 1t3tA.18.50 read from T0506.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)P18 (1t3tA)L43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1t3tA)A45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1t3tA)P46 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1t3tA 44 :N T0506 22 :APFEA 1t3tA 47 :LNDSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=17186 # 1ik9C.18.17 read from T0506.t2k.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)A22 (1ik9C)T769 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1ik9C)D770 because Y (epsilon') conformation "forbidden" or filtered. T0506 18 :PSAG 1ik9C 765 :YFID T0506 24 :FEA 1ik9C 771 :LNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17188 # 1noyA.18.57 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)P18 (1noyA)Q58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1noyA)S62 because Y (epsilon') conformation "forbidden" or filtered. T0506 19 :SAG 1noyA 59 :KFP T0506 23 :PFEA 1noyA 63 :MKDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=17190 1g9gA expands to /projects/compbio/data/pdb/1g9g.pdb.gz 1g9gA:Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 345, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 364, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 366, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 418, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 420, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 424, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 426, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 428, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 430, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 468, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 743, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 745, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1536, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1538, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1540, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1544, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1546, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1548, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1757, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1759, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1761, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1847, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1851, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1853, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1855, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1857, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1859, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1861, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 1863, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3232, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3234, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3236, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3238, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3240, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3242, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 3244, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4797, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4799, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4801, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4803, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4805, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4807, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4809, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4811, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4974, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4976, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4978, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4980, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4982, because occupancy 0.500 <= existing 0.500 in 1g9gA Skipped atom 4984, because occupancy 0.500 <= existing 0.500 in 1g9gA # 1g9gA.18.0 read from T0506.t2k.many.frag # adding 1g9gA to template set # found chain 1g9gA in template set Warning: unaligning (T0506)P18 because first residue in template chain is (1g9gA)A1 Warning: unaligning (T0506)G21 (1g9gA)P4 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1g9gA 2 :SS T0506 22 :APFEA 1g9gA 5 :ANKVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17192 # 1kb9D.18.19 read from T0506.t2k.many.frag # found chain 1kb9D in template set T0506 18 :PSAGAPFEA 1kb9D 81 :PFETFDHAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17193 1zb1A expands to /projects/compbio/data/pdb/1zb1.pdb.gz 1zb1A:# 1zb1A.18.235 read from T0506.t2k.many.frag # adding 1zb1A to template set # found chain 1zb1A in template set Warning: unaligning (T0506)P18 (1zb1A)V231 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SAGAPFEA 1zb1A 232 :AIYGEPKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=17194 # 1kaeA.18.23 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 18 :PSAGAPFEA 1kaeA 24 :PAISASESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17195 # 1pq4A.18.36 read from T0506.t2k.many.frag # found chain 1pq4A in template set Warning: unaligning (T0506)G21 (1pq4A)E86 because E (beta_S) conformation "forbidden" or filtered. T0506 18 :PSA 1pq4A 83 :HTY T0506 22 :APFEA 1pq4A 87 :PKPQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17197 # 2f60K.18.34 read from T0506.t2k.many.frag # found chain 2f60K in template set Warning: unaligning (T0506)A20 (2f60K)G156 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2f60K)I157 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PS 2f60K 154 :PR T0506 22 :APFEA 2f60K 158 :FTKED Number of specific fragments extracted= 2 number of extra gaps= 1 total=17199 # 2bvlA.18.333 read from T0506.t2k.many.frag # found chain 2bvlA in template set Warning: unaligning (T0506)A22 (2bvlA)L338 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSAG 2bvlA 334 :HFDM T0506 23 :PFEA 2bvlA 339 :DEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17201 # 1w33A.19.43 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 19 :SAGA 1w33A 113 :YDLI T0506 24 :FEAV 1w33A 118 :EDIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17203 # 1oohA.19.38 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)A20 (1oohA)F38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1oohA)P39 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1oohA 37 :N T0506 22 :APFEAV 1oohA 40 :PSQDLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=17205 # 1u02A.19.20 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 19 :SAGAPFEAV 1u02A 21 :ESYADAGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17206 # 1ltzA.19.32 read from T0506.t2k.many.frag # found chain 1ltzA in training set T0506 19 :SAGAPFEAV 1ltzA 33 :LDRYSAEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17207 # 1ujcA.19.19 read from T0506.t2k.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)G21 (1ujcA)P22 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1ujcA 20 :VR T0506 22 :APFEAV 1ujcA 23 :LTTNGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=17209 # 1iuqA.19.245 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)A22 (1iuqA)F250 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SAG 1iuqA 247 :PAP T0506 23 :PFEAV 1iuqA 251 :DASSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17211 # 1dg9A.19.51 read from T0506.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0506)S19 (1dg9A)G52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1dg9A)S54 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :A 1dg9A 53 :R T0506 22 :APFEAV 1dg9A 55 :PDPRAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=17213 # 2fhpA.19.23 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)A20 (2fhpA)R22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2fhpA)T24 because D (zeta) conformation "forbidden" or filtered. T0506 19 :S 2fhpA 21 :T T0506 21 :G 2fhpA 23 :P T0506 23 :PFEAV 2fhpA 25 :TDKVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=17216 # 1ji7A.19.12 read from T0506.t2k.many.frag # found chain 1ji7A in training set T0506 19 :SAGAPFEAV 1ji7A 27 :IYWSRDDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17217 # 1wolA.19.61 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)A20 (1wolA)T63 because D (zeta) conformation "forbidden" or filtered. T0506 19 :S 1wolA 62 :L T0506 21 :GAPFEAV 1wolA 64 :NPPADIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17219 # 1yvhA.19.156 read from T0506.t2k.many.frag # found chain 1yvhA in template set T0506 19 :SAGAPFEAV 1yvhA 179 :FRITKADAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17220 # 2bg5A.19.224 read from T0506.t2k.many.frag # found chain 2bg5A in template set Warning: unaligning (T0506)A22 (2bg5A)F477 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SAG 2bg5A 474 :YQP T0506 23 :PFEAV 2bg5A 478 :HPAIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17222 # 1q74A.19.109 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 19 :SAGAPFEAV 1q74A 110 :VDADPRQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17223 # 1vns.19.125 read from T0506.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0506)S19 because of BadResidue code TOO_MANY_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1vns)G126 Warning: unaligning (T0506)G21 (1vns)N128 because G (3-10) conformation "forbidden" or filtered. T0506 20 :A 1vns 127 :A T0506 22 :APFEAV 1vns 129 :ISDNAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=17225 # 1b8oA.19.162 read from T0506.t2k.many.frag # found chain 1b8oA in training set T0506 19 :SAGAPFEAV 1b8oA 163 :SDAYDRDMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17226 # 1t3tA.19.51 read from T0506.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)G21 (1t3tA)P46 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1t3tA 44 :NA T0506 22 :APFEAV 1t3tA 47 :LNDSEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17228 # 1dkiA.19.222 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)A22 (1dkiA)E108 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SAG 1dkiA 105 :SGR T0506 23 :PFEAV 1dkiA 109 :SNVQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17230 # 1sxrA.19.116 read from T0506.t2k.many.frag # found chain 1sxrA in training set Warning: unaligning (T0506)A20 (1sxrA)K118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1sxrA)L119 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1sxrA 117 :D T0506 22 :APFEAV 1sxrA 120 :PSDAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17232 # 1e2wA.19.85 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)G21 (1e2wA)R88 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SA 1e2wA 86 :PD T0506 22 :APFEAV 1e2wA 89 :VPAEIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17234 # 1zb1A.19.236 read from T0506.t2k.many.frag # found chain 1zb1A in template set T0506 19 :SAGAPFEAV 1zb1A 232 :AIYGEPKWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17235 # 1p0yA.19.159 read from T0506.t2k.many.frag # found chain 1p0yA in template set Warning: unaligning (T0506)A20 (1p0yA)D205 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1p0yA)V207 because E (beta_S) conformation "forbidden" or filtered. T0506 19 :S 1p0yA 204 :P T0506 21 :G 1p0yA 206 :P T0506 23 :PFEAV 1p0yA 208 :TLDDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=17238 # 1hufA.19.49 read from T0506.t2k.many.frag # found chain 1hufA in template set T0506 19 :SAGAPFEAV 1hufA 45 :ASGARESEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17239 1fp3A expands to /projects/compbio/data/pdb/1fp3.pdb.gz 1fp3A:# 1fp3A.19.72 read from T0506.t2k.many.frag # adding 1fp3A to template set # found chain 1fp3A in template set Warning: unaligning (T0506)P23 (1fp3A)R77 because E (beta_S) conformation "forbidden" or filtered. T0506 19 :SAGA 1fp3A 73 :ERFH T0506 24 :FEAV 1fp3A 78 :PELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17241 # 1n9eA.19.60 read from T0506.t2k.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)A20 (1n9eA)T62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1n9eA)S63 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1n9eA 61 :W T0506 22 :APFEAV 1n9eA 64 :LAKEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17243 1yc5A expands to /projects/compbio/data/pdb/1yc5.pdb.gz 1yc5A:# 1yc5A.19.162 read from T0506.t2k.many.frag # adding 1yc5A to template set # found chain 1yc5A in template set T0506 19 :SAGAPFEAV 1yc5A 163 :GENLPQDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17244 # 1g9gA.19.1 read from T0506.t2k.many.frag # found chain 1g9gA in template set Warning: unaligning (T0506)G21 (1g9gA)P4 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1g9gA 2 :SS T0506 22 :APFEAV 1g9gA 5 :ANKVYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17246 # 1q52A.19.57 read from T0506.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0506)A20 (1q52A)N59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1q52A)A60 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1q52A 58 :R T0506 22 :APFEAV 1q52A 61 :FRPHTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17248 # 1wpbA.19.103 read from T0506.t2k.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)P23 (1wpbA)E106 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SAGA 1wpbA 102 :DAAT T0506 24 :FEAV 1wpbA 107 :ARYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17250 1wlqC expands to /projects/compbio/data/pdb/1wlq.pdb.gz 1wlqC:# 1wlqC.19.73 read from T0506.t2k.many.frag # adding 1wlqC to template set # found chain 1wlqC in template set Warning: unaligning (T0506)S19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wlqC)R241 Warning: unaligning (T0506)A20 (1wlqC)K242 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1wlqC)F244 because D (zeta) conformation "forbidden" or filtered. T0506 21 :G 1wlqC 243 :R T0506 23 :PFEAV 1wlqC 245 :EERNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17252 1l8wA expands to /projects/compbio/data/pdb/1l8w.pdb.gz 1l8wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1l8wA.19.199 read from T0506.t2k.many.frag # adding 1l8wA to template set # found chain 1l8wA in template set Warning: unaligning (T0506)G21 (1l8wA)H210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1l8wA)G211 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1l8wA)D212 because Y (epsilon') conformation "forbidden" or filtered. T0506 19 :SA 1l8wA 208 :AA T0506 24 :FEAV 1l8wA 213 :SEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17254 # 1oohA.20.39 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)A20 (1oohA)F38 because Y (epsilon') conformation "forbidden" or filtered. T0506 21 :GAPFEAVR 1oohA 39 :PPSQDLMC Number of specific fragments extracted= 1 number of extra gaps= 1 total=17255 # 1w33A.20.44 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 20 :AGA 1w33A 114 :DLI T0506 24 :FEAVR 1w33A 118 :EDIQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=17257 # 1u02A.20.21 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)A22 (1u02A)A24 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :AG 1u02A 22 :SY T0506 23 :PFEAVR 1u02A 25 :DAGLLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17259 # 1ujcA.20.20 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 20 :AGAPFEAVR 1ujcA 21 :RPLTTNGCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17260 # 1ltzA.20.33 read from T0506.t2k.many.frag # found chain 1ltzA in training set T0506 20 :AGAPFEAVR 1ltzA 34 :DRYSAEDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17261 # 1q74A.20.110 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)G21 (1q74A)A112 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :A 1q74A 111 :D T0506 22 :APFEAVR 1q74A 113 :DPRQTVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17263 # 1iuqA.20.246 read from T0506.t2k.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)G21 (1iuqA)P249 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :A 1iuqA 248 :A T0506 22 :APFEAVR 1iuqA 250 :FDASSVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17265 # 1vns.20.126 read from T0506.t2k.many.frag # found chain 1vns in training set Warning: unaligning (T0506)A20 (1vns)A127 because N (gamma') conformation "forbidden" or filtered. T0506 21 :GAPFEAVR 1vns 128 :NISDNAYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17266 # 2bg5A.20.225 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 20 :AGAPFEAVR 2bg5A 475 :QPFHPAILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17267 # 1n9eA.20.61 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 20 :AGAPFEAVR 1n9eA 62 :TSLAKEEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17268 # 1sxrA.20.117 read from T0506.t2k.many.frag # found chain 1sxrA in training set Warning: unaligning (T0506)A20 (1sxrA)K118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1sxrA)L119 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVR 1sxrA 120 :PSDAALQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17269 1yueA expands to /projects/compbio/data/pdb/1yue.pdb.gz 1yueA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yueA.20.17 read from T0506.t2k.many.frag # adding 1yueA to template set # found chain 1yueA in template set Warning: unaligning (T0506)P23 (1yueA)R21 because D (zeta) conformation "forbidden" or filtered. T0506 20 :AGA 1yueA 18 :SIG T0506 24 :FEAVR 1yueA 22 :PNLVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17271 # 1b8oA.20.163 read from T0506.t2k.many.frag # found chain 1b8oA in training set T0506 20 :AGAPFEAVR 1b8oA 164 :DAYDRDMRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17272 # 1l8wA.20.200 read from T0506.t2k.many.frag # found chain 1l8wA in template set Warning: unaligning (T0506)G21 (1l8wA)H210 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1l8wA)D212 because Y (epsilon') conformation "forbidden" or filtered. T0506 20 :A 1l8wA 209 :A T0506 22 :A 1l8wA 211 :G T0506 24 :FEAVR 1l8wA 213 :SEAAS Number of specific fragments extracted= 3 number of extra gaps= 2 total=17275 # 1q52A.20.58 read from T0506.t2k.many.frag # found chain 1q52A in training set Warning: unaligning (T0506)A20 (1q52A)N59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1q52A)A60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1q52A)F61 because E (beta_S) conformation "forbidden" or filtered. T0506 23 :PFEAVR 1q52A 62 :RPHTVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17276 # 1t3tA.20.52 read from T0506.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)A20 (1t3tA)A45 because Y (epsilon') conformation "forbidden" or filtered. T0506 21 :GAPFEAVR 1t3tA 46 :PLNDSEQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17277 2ewrA expands to /projects/compbio/data/pdb/2ewr.pdb.gz 2ewrA:Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 375, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 623, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 673, because occupancy 0.300 <= existing 0.700 in 2ewrA Skipped atom 677, because occupancy 0.300 <= existing 0.700 in 2ewrA Skipped atom 679, because occupancy 0.300 <= existing 0.700 in 2ewrA Skipped atom 681, because occupancy 0.300 <= existing 0.700 in 2ewrA Skipped atom 683, because occupancy 0.300 <= existing 0.700 in 2ewrA Skipped atom 685, because occupancy 0.300 <= existing 0.700 in 2ewrA Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2ewrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 969, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 971, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 973, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 993, because occupancy 0.500 <= existing 0.500 in 2ewrA Skipped atom 995, because occupancy 0.500 <= existing 0.500 in 2ewrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ewrA.20.11 read from T0506.t2k.many.frag # adding 2ewrA to template set # found chain 2ewrA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2ewrA)I2 T0506 23 :PFEAVR 2ewrA 3 :RPEYLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17278 # 1zb1A.20.237 read from T0506.t2k.many.frag # found chain 1zb1A in template set T0506 20 :AGAPFEAVR 1zb1A 233 :IYGEPKWKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17279 # 1dg9A.20.52 read from T0506.t2k.many.frag # found chain 1dg9A in template set Warning: unaligning (T0506)A22 (1dg9A)P55 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :AG 1dg9A 53 :RS T0506 23 :PFEAVR 1dg9A 56 :DPRAVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17281 # 1yc5A.20.163 read from T0506.t2k.many.frag # found chain 1yc5A in template set Warning: unaligning (T0506)A20 (1yc5A)E164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1yc5A)N165 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVR 1yc5A 166 :LPQDALR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17282 # 1u4bA.20.398 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 20 :AGAPFEAVR 1u4bA 695 :DEVTPNMRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17283 2c1vA expands to /projects/compbio/data/pdb/2c1v.pdb.gz 2c1vA:# 2c1vA.20.37 read from T0506.t2k.many.frag # adding 2c1vA to template set # found chain 2c1vA in template set Warning: unaligning (T0506)G21 (2c1vA)P39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2c1vA)L40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (2c1vA)T41 because E (beta_S) conformation "forbidden" or filtered. T0506 20 :A 2c1vA 38 :V T0506 24 :FEAVR 2c1vA 42 :AEKIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17285 # 1yvhA.20.157 read from T0506.t2k.many.frag # found chain 1yvhA in template set Warning: unaligning (T0506)G21 (1yvhA)I181 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :A 1yvhA 180 :R T0506 22 :APFEAVR 1yvhA 182 :TKADAAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=17287 2erbA expands to /projects/compbio/data/pdb/2erb.pdb.gz 2erbA:Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 327, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 696, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 698, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 700, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 936, because occupancy 0.500 <= existing 0.500 in 2erbA Skipped atom 938, because occupancy 0.500 <= existing 0.500 in 2erbA # 2erbA.20.44 read from T0506.t2k.many.frag # adding 2erbA to template set # found chain 2erbA in template set Warning: unaligning (T0506)P23 (2erbA)D48 because E (beta_S) conformation "forbidden" or filtered. T0506 20 :AGA 2erbA 45 :IHE T0506 24 :FEAVR 2erbA 49 :EKLKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=17289 # 2fhpA.20.24 read from T0506.t2k.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)A20 (2fhpA)R22 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2fhpA)T24 because D (zeta) conformation "forbidden" or filtered. T0506 21 :G 2fhpA 23 :P T0506 23 :PFEAVR 2fhpA 25 :TDKVKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=17291 # 1dkiA.20.223 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)G21 (1dkiA)R107 because G (3-10) conformation "forbidden" or filtered. T0506 20 :A 1dkiA 106 :G T0506 22 :APFEAVR 1dkiA 108 :ESNVQKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=17293 # 1hbnB.20.77 read from T0506.t2k.many.frag # found chain 1hbnB in training set T0506 20 :AGAPFEAVR 1hbnB 79 :VGNAESIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17294 # 1rv9A.20.52 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 20 :AGAPFEAVR 1rv9A 53 :VGDNPEAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17295 # 1ji7A.20.13 read from T0506.t2k.many.frag # found chain 1ji7A in training set T0506 20 :AGAPFEAVR 1ji7A 28 :YWSRDDVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17296 # 1wolA.20.62 read from T0506.t2k.many.frag # found chain 1wolA in template set Warning: unaligning (T0506)A20 (1wolA)T63 because D (zeta) conformation "forbidden" or filtered. T0506 21 :GAPFEAVR 1wolA 64 :NPPADILQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17297 # 1oohA.21.40 read from T0506.t2k.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)G21 (1oohA)P39 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1oohA 40 :PSQDLMCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=17298 # 1u02A.21.22 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)G21 (1u02A)Y23 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1u02A 24 :ADAGLLSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17299 # 1w33A.21.45 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 21 :GA 1w33A 115 :LI T0506 24 :FEAVRV 1w33A 118 :EDIQMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17301 # 1sxrA.21.118 read from T0506.t2k.many.frag # found chain 1sxrA in training set Warning: unaligning (T0506)G21 (1sxrA)L119 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1sxrA 120 :PSDAALQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17302 # 1ujcA.21.21 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 21 :GAPFEAVRV 1ujcA 22 :PLTTNGCDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17303 # 2ewrA.21.12 read from T0506.t2k.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2ewrA)I2 T0506 23 :PFEAVRV 2ewrA 3 :RPEYLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17304 # 1vns.21.127 read from T0506.t2k.many.frag # found chain 1vns in training set T0506 21 :GAPFEAVRV 1vns 128 :NISDNAYAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17305 # 1u4bA.21.399 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 21 :GAPFEAVRV 1u4bA 696 :EVTPNMRRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17306 # 1q74A.21.111 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)A22 (1q74A)D113 because P (beta_P) conformation "forbidden" or filtered. T0506 21 :G 1q74A 112 :A T0506 23 :PFEAVRV 1q74A 114 :PRQTVGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17308 # 1ltzA.21.34 read from T0506.t2k.many.frag # found chain 1ltzA in training set Warning: unaligning (T0506)G21 (1ltzA)R35 because G (3-10) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1ltzA 36 :YSAEDHAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=17309 # 1q52A.21.59 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 21 :GAPFEAVRV 1q52A 60 :AFRPHTVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17310 # 1l6rA.21.21 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 21 :GAPFEAVRV 1l6rA 19 :LISTKAIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=17311 # 1n9eA.21.62 read from T0506.t2k.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)G21 (1n9eA)S63 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1n9eA 64 :LAKEEVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=17312 # 1t3tA.21.53 read from T0506.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)G21 (1t3tA)P46 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1t3tA 47 :LNDSEQAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17313 # 2bg5A.21.226 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 21 :GAPFEAVRV 2bg5A 476 :PFHPAILRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17314 # 1yc5A.21.164 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 21 :GAPFEAVRV 1yc5A 165 :NLPQDALRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17315 # 1yueA.21.18 read from T0506.t2k.many.frag # found chain 1yueA in template set Warning: unaligning (T0506)P23 (1yueA)R21 because D (zeta) conformation "forbidden" or filtered. T0506 21 :GA 1yueA 19 :IG T0506 24 :FEAVRV 1yueA 22 :PNLVAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17317 1ylhA expands to /projects/compbio/data/pdb/1ylh.pdb.gz 1ylhA:# 1ylhA.21.115 read from T0506.t2k.many.frag # adding 1ylhA to template set # found chain 1ylhA in template set Warning: unaligning (T0506)G21 (1ylhA)P96 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1ylhA 97 :MTQETWKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17318 # 1ytlA.21.44 read from T0506.t2k.many.frag # found chain 1ytlA in training set Warning: unaligning (T0506)G21 (1ytlA)D45 because N (gamma') conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1ytlA 46 :MTDEMFER Number of specific fragments extracted= 1 number of extra gaps= 1 total=17319 # 1xhnA.21.13 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 21 :GAPFEAVRV 1xhnA 14 :PPREDAARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17320 1xpjA expands to /projects/compbio/data/pdb/1xpj.pdb.gz 1xpjA:Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 99, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 101, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 103, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 309, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 311, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 313, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 355, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 357, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 359, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 431, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 433, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 435, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 437, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 439, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 441, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 529, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 531, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 535, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 614, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 616, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 623, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 772, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 776, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 778, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 806, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 808, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 810, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 817, because occupancy 0.400 <= existing 0.600 in 1xpjA Skipped atom 828, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 830, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 832, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 834, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 836, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 902, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 904, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 931, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 933, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 935, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 937, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 939, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 941, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 950, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1010, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1107, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1109, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1111, because occupancy 0.500 <= existing 0.500 in 1xpjA Skipped atom 1113, because occupancy 0.500 <= existing 0.500 in 1xpjA # 1xpjA.21.23 read from T0506.t2k.many.frag # adding 1xpjA to template set # found chain 1xpjA in template set Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE in next template residue (1xpjA)R26 Warning: unaligning (T0506)P23 because of BadResidue code BAD_PEPTIDE at template residue (1xpjA)R26 T0506 21 :G 1xpjA 24 :L T0506 24 :FEAVRV 1xpjA 27 :LDVIEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=17322 # 1b8oA.21.164 read from T0506.t2k.many.frag # found chain 1b8oA in training set T0506 21 :GAPFEAVRV 1b8oA 165 :AYDRDMRQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17323 # 2c1vA.21.38 read from T0506.t2k.many.frag # found chain 2c1vA in template set Warning: unaligning (T0506)G21 (2c1vA)P39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (2c1vA)T41 because E (beta_S) conformation "forbidden" or filtered. T0506 22 :A 2c1vA 40 :L T0506 24 :FEAVRV 2c1vA 42 :AEKIEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=17325 # 1rv9A.21.53 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 21 :GAPFEAVRV 1rv9A 54 :GDNPEAVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17326 # 1l8wA.21.201 read from T0506.t2k.many.frag # found chain 1l8wA in template set Warning: unaligning (T0506)P23 (1l8wA)D212 because Y (epsilon') conformation "forbidden" or filtered. T0506 21 :GA 1l8wA 210 :HG T0506 24 :FEAVRV 1l8wA 213 :SEAASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=17328 # 1iuqA.21.247 read from T0506.t2k.many.frag # found chain 1iuqA in training set T0506 21 :GAPFEAVRV 1iuqA 249 :PFDASSVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17329 # 1vpbA.21.12 read from T0506.t2k.many.frag # found chain 1vpbA in training set Warning: unaligning (T0506)G21 because first residue in template chain is (1vpbA)M1 T0506 22 :APFEAVRV 1vpbA 2 :ITDENKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17330 # 2erbA.21.45 read from T0506.t2k.many.frag # found chain 2erbA in template set Warning: unaligning (T0506)P23 (2erbA)D48 because E (beta_S) conformation "forbidden" or filtered. T0506 21 :GA 2erbA 46 :HE T0506 24 :FEAVRV 2erbA 49 :EKLKCY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17332 # 1x9dA.21.378 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 21 :GAPFEAVRV 1x9dA 540 :GLPASHMEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17333 # 1dkiA.21.224 read from T0506.t2k.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)G21 (1dkiA)R107 because G (3-10) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1dkiA 108 :ESNVQKMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17334 # 1oohA.22.41 read from T0506.t2k.many.frag # found chain 1oohA in training set T0506 22 :APFEAVRVA 1oohA 40 :PSQDLMCYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17335 # 1u02A.22.23 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 22 :APFEAVRVA 1u02A 24 :ADAGLLSLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17336 # 1sxrA.22.119 read from T0506.t2k.many.frag # found chain 1sxrA in training set Warning: unaligning (T0506)A22 (1sxrA)P120 because P (beta_P) conformation "forbidden" or filtered. T0506 23 :PFEAVRVA 1sxrA 121 :SDAALQAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17337 # 1xpjA.22.24 read from T0506.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE in next template residue (1xpjA)R26 Warning: unaligning (T0506)P23 because of BadResidue code BAD_PEPTIDE at template residue (1xpjA)R26 T0506 24 :FEAVRVA 1xpjA 27 :LDVIEQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17338 # 1u4bA.22.400 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 22 :APFEAVRVA 1u4bA 697 :VTPNMRRQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17339 # 1q52A.22.60 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 22 :APFEAVRVA 1q52A 61 :FRPHTVDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17340 # 2ewrA.22.13 read from T0506.t2k.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)A22 because first residue in template chain is (2ewrA)I2 T0506 23 :PFEAVRVA 2ewrA 3 :RPEYLRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17341 # 1xhnA.22.14 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 22 :APFEAVRVA 1xhnA 15 :PREDAARVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17342 # 1q74A.22.112 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 22 :APFEAVRVA 1q74A 113 :DPRQTVGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17343 # 1vns.22.128 read from T0506.t2k.many.frag # found chain 1vns in training set T0506 22 :APFEAVRVA 1vns 129 :ISDNAYAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17344 # 1l6rA.22.22 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 22 :APFEAVRVA 1l6rA 20 :ISTKAIESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17345 # 1yc5A.22.165 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 22 :APFEAVRVA 1yc5A 166 :LPQDALREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17346 # 1w33A.22.46 read from T0506.t2k.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 22 :A 1w33A 116 :I T0506 24 :FEAVRVA 1w33A 118 :EDIQMKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17348 # 1n9eA.22.63 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 22 :APFEAVRVA 1n9eA 64 :LAKEEVQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17349 # 2bg5A.22.227 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 22 :APFEAVRVA 2bg5A 477 :FHPAILRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17350 2b8nA expands to /projects/compbio/data/pdb/2b8n.pdb.gz 2b8nA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b8nA.22.104 read from T0506.t2k.many.frag # adding 2b8nA to template set # found chain 2b8nA in template set Warning: unaligning (T0506)P23 (2b8nA)D94 because Y (epsilon') conformation "forbidden" or filtered. T0506 22 :A 2b8nA 93 :P T0506 24 :FEAVRVA 2b8nA 95 :ENTIKTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17352 # 1x9dA.22.379 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 22 :APFEAVRVA 1x9dA 541 :LPASHMELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17353 # 1ytlA.22.45 read from T0506.t2k.many.frag # found chain 1ytlA in training set T0506 22 :APFEAVRVA 1ytlA 46 :MTDEMFERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17354 # 1vpbA.22.13 read from T0506.t2k.many.frag # found chain 1vpbA in training set T0506 22 :APFEAVRVA 1vpbA 2 :ITDENKKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17355 # 1umgA.22.19 read from T0506.t2k.many.frag # found chain 1umgA in training set T0506 22 :APFEAVRVA 1umgA 22 :VHPDTMAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17356 # 1ujcA.22.22 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 22 :APFEAVRVA 1ujcA 23 :LTTNGCDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=17357 3thiA expands to /projects/compbio/data/pdb/3thi.pdb.gz 3thiA:# 3thiA.22.183 read from T0506.t2k.many.frag # adding 3thiA to template set # found chain 3thiA in template set T0506 22 :APFEAVRVA 3thiA 192 :LNDKVIRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17358 # 1rv9A.22.54 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 22 :APFEAVRVA 1rv9A 55 :DNPEAVRRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17359 # 1l8wA.22.202 read from T0506.t2k.many.frag # found chain 1l8wA in template set Warning: unaligning (T0506)P23 (1l8wA)D212 because Y (epsilon') conformation "forbidden" or filtered. T0506 22 :A 1l8wA 211 :G T0506 24 :FEAVRVA 1l8wA 213 :SEAASKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17361 # 1yueA.22.19 read from T0506.t2k.many.frag # found chain 1yueA in template set Warning: unaligning (T0506)P23 (1yueA)R21 because D (zeta) conformation "forbidden" or filtered. T0506 22 :A 1yueA 20 :G T0506 24 :FEAVRVA 1yueA 22 :PNLVALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17363 # 1ltzA.22.35 read from T0506.t2k.many.frag # found chain 1ltzA in training set T0506 22 :APFEAVRVA 1ltzA 36 :YSAEDHATW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17364 # 2c1vA.22.39 read from T0506.t2k.many.frag # found chain 2c1vA in template set Warning: unaligning (T0506)P23 (2c1vA)T41 because E (beta_S) conformation "forbidden" or filtered. T0506 22 :A 2c1vA 40 :L T0506 24 :FEAVRVA 2c1vA 42 :AEKIELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17366 # 1ylhA.22.116 read from T0506.t2k.many.frag # found chain 1ylhA in template set T0506 22 :APFEAVRVA 1ylhA 97 :MTQETWKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17367 1vefA expands to /projects/compbio/data/pdb/1vef.pdb.gz 1vefA:# 1vefA.22.202 read from T0506.t2k.many.frag # adding 1vefA to template set # found chain 1vefA in template set T0506 22 :APFEAVRVA 1vefA 203 :ATPEFLRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17368 1vk9A expands to /projects/compbio/data/pdb/1vk9.pdb.gz 1vk9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vk9A.22.12 read from T0506.t2k.many.frag # adding 1vk9A to template set # found chain 1vk9A in template set T0506 22 :APFEAVRVA 1vk9A 1 :VEKNLLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17369 # 1xpjA.23.25 read from T0506.t2k.many.frag # found chain 1xpjA in template set Warning: unaligning (T0506)P23 because of BadResidue code BAD_PEPTIDE at template residue (1xpjA)R26 T0506 24 :FEAVRVAR 1xpjA 27 :LDVIEQLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17370 # 1sxrA.23.120 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 23 :PFEAVRVAR 1sxrA 121 :SDAALQAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17371 # 1u02A.23.24 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 23 :PFEAVRVAR 1u02A 25 :DAGLLSLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17372 # 1xhnA.23.15 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 23 :PFEAVRVAR 1xhnA 16 :REDAARVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17373 # 1q52A.23.61 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 23 :PFEAVRVAR 1q52A 62 :RPHTVDELY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17374 # 1l6rA.23.23 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 23 :PFEAVRVAR 1l6rA 21 :STKAIESIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17375 # 1x9dA.23.380 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 23 :PFEAVRVAR 1x9dA 542 :PASHMELAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17376 # 2ewrA.23.14 read from T0506.t2k.many.frag # found chain 2ewrA in template set T0506 23 :PFEAVRVAR 2ewrA 3 :RPEYLRVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17377 # 2b8nA.23.105 read from T0506.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)P23 (2b8nA)D94 because Y (epsilon') conformation "forbidden" or filtered. T0506 24 :FEAVRVAR 2b8nA 95 :ENTIKTTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17378 # 1n9eA.23.64 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 23 :PFEAVRVAR 1n9eA 65 :AKEEVQEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17379 # 1u4bA.23.401 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 23 :PFEAVRVAR 1u4bA 698 :TPNMRRQAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17380 # 3thiA.23.184 read from T0506.t2k.many.frag # found chain 3thiA in template set T0506 23 :PFEAVRVAR 3thiA 193 :NDKVIRGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17381 # 2bg5A.23.228 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 23 :PFEAVRVAR 2bg5A 478 :HPAILRLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17382 # 1oohA.23.42 read from T0506.t2k.many.frag # found chain 1oohA in training set T0506 23 :PFEAVRVAR 1oohA 41 :SQDLMCYTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17383 # 1vpbA.23.14 read from T0506.t2k.many.frag # found chain 1vpbA in training set T0506 23 :PFEAVRVAR 1vpbA 3 :TDENKKLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17384 # 1yc5A.23.166 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 23 :PFEAVRVAR 1yc5A 167 :PQDALREAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17385 # 1ytlA.23.46 read from T0506.t2k.many.frag # found chain 1ytlA in training set T0506 23 :PFEAVRVAR 1ytlA 47 :TDEMFERVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17386 # 1q74A.23.113 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 23 :PFEAVRVAR 1q74A 114 :PRQTVGALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17387 2afaA expands to /projects/compbio/data/pdb/2afa.pdb.gz 2afaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2afaA.23.272 read from T0506.t2k.many.frag # adding 2afaA to template set # found chain 2afaA in template set T0506 23 :PFEAVRVAR 2afaA 273 :PAWLLEDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17388 # 1umgA.23.20 read from T0506.t2k.many.frag # found chain 1umgA in training set T0506 23 :PFEAVRVAR 1umgA 23 :HPDTMAAAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17389 # 1rv9A.23.55 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 23 :PFEAVRVAR 1rv9A 56 :NPEAVRRNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17390 # 1ylhA.23.117 read from T0506.t2k.many.frag # found chain 1ylhA in template set T0506 23 :PFEAVRVAR 1ylhA 98 :TQETWKSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17391 # 2c1vA.23.40 read from T0506.t2k.many.frag # found chain 2c1vA in template set Warning: unaligning (T0506)P23 (2c1vA)T41 because E (beta_S) conformation "forbidden" or filtered. T0506 24 :FEAVRVAR 2c1vA 42 :AEKIELGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17392 # 1vns.23.129 read from T0506.t2k.many.frag # found chain 1vns in training set T0506 23 :PFEAVRVAR 1vns 130 :SDNAYAQLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17393 # 1vefA.23.203 read from T0506.t2k.many.frag # found chain 1vefA in template set T0506 23 :PFEAVRVAR 1vefA 204 :TPEFLRAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17394 # 1l8wA.23.203 read from T0506.t2k.many.frag # found chain 1l8wA in template set Warning: unaligning (T0506)P23 (1l8wA)D212 because Y (epsilon') conformation "forbidden" or filtered. T0506 24 :FEAVRVAR 1l8wA 213 :SEAASKAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17395 2a9sA expands to /projects/compbio/data/pdb/2a9s.pdb.gz 2a9sA:Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 683, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 685, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 2a9sA Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 2a9sA # 2a9sA.23.6 read from T0506.t2k.many.frag # adding 2a9sA to template set # found chain 2a9sA in template set T0506 23 :PFEAVRVAR 2a9sA 5 :PGDIEELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17396 # 1yueA.23.20 read from T0506.t2k.many.frag # found chain 1yueA in template set Warning: unaligning (T0506)P23 (1yueA)R21 because D (zeta) conformation "forbidden" or filtered. T0506 24 :FEAVRVAR 1yueA 22 :PNLVALTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17397 # 1ujcA.23.23 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 23 :PFEAVRVAR 1ujcA 24 :TTNGCDESR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17398 # 1gqiA.23.487 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 23 :PFEAVRVAR 1gqiA 492 :QPAFIEPVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17399 # 1xhnA.24.16 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 24 :FEAVRVARD 1xhnA 17 :EDAARVARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17400 # 1xpjA.24.26 read from T0506.t2k.many.frag # found chain 1xpjA in template set T0506 24 :FEAVRVARD 1xpjA 27 :LDVIEQLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17401 # 1sxrA.24.121 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 24 :FEAVRVARD 1sxrA 122 :DAALQAAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17402 # 2b8nA.24.106 read from T0506.t2k.many.frag # found chain 2b8nA in template set T0506 24 :FEAVRVARD 2b8nA 95 :ENTIKTTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17403 # 1q52A.24.62 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 24 :FEAVRVARD 1q52A 63 :PHTVDELYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17404 # 1n9eA.24.65 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 24 :FEAVRVARD 1n9eA 66 :KEEVQEVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17405 # 1l6rA.24.24 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 24 :FEAVRVARD 1l6rA 22 :TKAIESIRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17406 # 3thiA.24.185 read from T0506.t2k.many.frag # found chain 3thiA in template set T0506 24 :FEAVRVARD 3thiA 194 :DKVIRGLRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17407 # 1x9dA.24.381 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 24 :FEAVRVARD 1x9dA 543 :ASHMELAQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17408 # 2afaA.24.273 read from T0506.t2k.many.frag # found chain 2afaA in template set T0506 24 :FEAVRVARD 2afaA 274 :AWLLEDAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17409 # 2bg5A.24.229 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 24 :FEAVRVARD 2bg5A 479 :PAILRLVKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17410 # 1yc5A.24.167 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 24 :FEAVRVARD 1yc5A 168 :QDALREAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17411 # 2ewrA.24.15 read from T0506.t2k.many.frag # found chain 2ewrA in template set T0506 24 :FEAVRVARD 2ewrA 4 :PEYLRVLRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17412 # 1u02A.24.25 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 24 :FEAVRVARD 1u02A 26 :AGLLSLISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17413 # 1mw9X.24.89 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 24 :FEAVRVARD 1mw9X 90 :EKVVSELKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17414 # 1u4bA.24.402 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 24 :FEAVRVARD 1u4bA 699 :PNMRRQAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17415 # 1ytlA.24.47 read from T0506.t2k.many.frag # found chain 1ytlA in training set T0506 24 :FEAVRVARD 1ytlA 48 :DEMFERVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17416 # 1vpbA.24.15 read from T0506.t2k.many.frag # found chain 1vpbA in training set T0506 24 :FEAVRVARD 1vpbA 4 :DENKKLAQW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17417 # 1ylhA.24.118 read from T0506.t2k.many.frag # found chain 1ylhA in template set T0506 24 :FEAVRVARD 1ylhA 99 :QETWKSLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17418 # 1rv9A.24.56 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 24 :FEAVRVARD 1rv9A 57 :PEAVRRNRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17419 # 1vefA.24.204 read from T0506.t2k.many.frag # found chain 1vefA in template set T0506 24 :FEAVRVARD 1vefA 205 :PEFLRAARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17420 # 1umgA.24.21 read from T0506.t2k.many.frag # found chain 1umgA in training set T0506 24 :FEAVRVARD 1umgA 24 :PDTMAAANK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17421 # 1vk9A.24.14 read from T0506.t2k.many.frag # found chain 1vk9A in template set T0506 24 :FEAVRVARD 1vk9A 3 :KNLLRSALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17422 # 1gqiA.24.488 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 24 :FEAVRVARD 1gqiA 493 :PAFIEPVKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17423 # 1yueA.24.21 read from T0506.t2k.many.frag # found chain 1yueA in template set T0506 24 :FEAVRVARD 1yueA 22 :PNLVALTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17424 2c27A expands to /projects/compbio/data/pdb/2c27.pdb.gz 2c27A:# 2c27A.24.11 read from T0506.t2k.many.frag # adding 2c27A to template set # found chain 2c27A in template set T0506 24 :FEAVRVARD 2c27A 12 :ADEQRSVRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17425 # 2c1vA.24.41 read from T0506.t2k.many.frag # found chain 2c1vA in template set T0506 24 :FEAVRVARD 2c1vA 42 :AEKIELGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17426 1uhvA expands to /projects/compbio/data/pdb/1uhv.pdb.gz 1uhvA:# 1uhvA.24.32 read from T0506.t2k.many.frag # adding 1uhvA to template set # found chain 1uhvA in template set T0506 24 :FEAVRVARD 1uhvA 33 :KEYIETLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17427 1xo0A expands to /projects/compbio/data/pdb/1xo0.pdb.gz 1xo0A:# 1xo0A.24.119 read from T0506.t2k.many.frag # adding 1xo0A to template set # found chain 1xo0A in template set T0506 24 :FEAVRVARD 1xo0A 139 :RTDFDQVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17428 1tjlA expands to /projects/compbio/data/pdb/1tjl.pdb.gz 1tjlA:# 1tjlA.24.33 read from T0506.t2k.many.frag # adding 1tjlA to template set # found chain 1tjlA in template set T0506 24 :FEAVRVARD 1tjlA 34 :EAQLAHFRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17429 # 1xhnA.25.17 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 25 :EAVRVARDV 1xhnA 18 :DAARVARFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17430 # 2b8nA.25.107 read from T0506.t2k.many.frag # found chain 2b8nA in template set T0506 25 :EAVRVARDV 2b8nA 96 :NTIKTTRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17431 # 3thiA.25.186 read from T0506.t2k.many.frag # found chain 3thiA in template set T0506 25 :EAVRVARDV 3thiA 195 :KVIRGLRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17432 # 1xpjA.25.27 read from T0506.t2k.many.frag # found chain 1xpjA in template set T0506 25 :EAVRVARDV 1xpjA 28 :DVIEQLREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17433 # 2afaA.25.274 read from T0506.t2k.many.frag # found chain 2afaA in template set T0506 25 :EAVRVARDV 2afaA 275 :WLLEDAKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17434 # 1sxrA.25.122 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 25 :EAVRVARDV 1sxrA 123 :AALQAAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17435 # 1q52A.25.63 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 25 :EAVRVARDV 1q52A 64 :HTVDELYRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17436 2axoA expands to /projects/compbio/data/pdb/2axo.pdb.gz 2axoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2axoA.25.58 read from T0506.t2k.many.frag # adding 2axoA to template set # found chain 2axoA in template set T0506 25 :EAVRVARDV 2axoA 59 :PADEALRKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17437 # 1mw9X.25.90 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 25 :EAVRVARDV 1mw9X 91 :KVVSELKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17438 # 1n9eA.25.66 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 25 :EAVRVARDV 1n9eA 67 :EEVQEVLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17439 # 1x9dA.25.382 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 25 :EAVRVARDV 1x9dA 544 :SHMELAQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17440 # 2bg5A.25.230 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 25 :EAVRVARDV 2bg5A 480 :AILRLVKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17441 # 1l6rA.25.25 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 25 :EAVRVARDV 1l6rA 23 :KAIESIRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17442 # 1uhvA.25.33 read from T0506.t2k.many.frag # found chain 1uhvA in template set T0506 25 :EAVRVARDV 1uhvA 34 :EYIETLKYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17443 # 1j79A.25.228 read from T0506.t2k.many.frag # found chain 1j79A in training set T0506 25 :EAVRVARDV 1j79A 229 :IHQQALREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17444 # 1gqiA.25.489 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 25 :EAVRVARDV 1gqiA 494 :AFIEPVKQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17445 # 1vefA.25.205 read from T0506.t2k.many.frag # found chain 1vefA in template set T0506 25 :EAVRVARDV 1vefA 206 :EFLRAAREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17446 # 1ylhA.25.119 read from T0506.t2k.many.frag # found chain 1ylhA in template set T0506 25 :EAVRVARDV 1ylhA 100 :ETWKSLREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17447 # 1xg4A.25.64 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 25 :EAVRVARDV 1xg4A 66 :DVLTDIRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17448 1c7nA expands to /projects/compbio/data/pdb/1c7n.pdb.gz 1c7nA:# 1c7nA.25.183 read from T0506.t2k.many.frag # adding 1c7nA to template set # found chain 1c7nA in template set T0506 25 :EAVRVARDV 1c7nA 184 :DELQKIKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17449 # 1umgA.25.22 read from T0506.t2k.many.frag # found chain 1umgA in training set T0506 25 :EAVRVARDV 1umgA 25 :DTMAAANKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17450 # 2ewrA.25.16 read from T0506.t2k.many.frag # found chain 2ewrA in template set T0506 25 :EAVRVARDV 2ewrA 5 :EYLRVLRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17451 # 2c27A.25.12 read from T0506.t2k.many.frag # found chain 2c27A in template set T0506 25 :EAVRVARDV 2c27A 13 :DEQRSVRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17452 # 1u02A.25.26 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 25 :EAVRVARDV 1u02A 27 :GLLSLISDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17453 1v9mA expands to /projects/compbio/data/pdb/1v9m.pdb.gz 1v9mA:# 1v9mA.25.78 read from T0506.t2k.many.frag # adding 1v9mA to template set # found chain 1v9mA in template set T0506 25 :EAVRVARDV 1v9mA 79 :EAREAVRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17454 # 1ytlA.25.48 read from T0506.t2k.many.frag # found chain 1ytlA in training set T0506 25 :EAVRVARDV 1ytlA 49 :EMFERVKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17455 # 1g61A.25.78 read from T0506.t2k.many.frag # found chain 1g61A in training set T0506 25 :EAVRVARDV 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17456 # 1gx5A.25.247 read from T0506.t2k.many.frag # found chain 1gx5A in training set T0506 25 :EAVRVARDV 1gx5A 248 :EARQAIKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17457 2f46A expands to /projects/compbio/data/pdb/2f46.pdb.gz 2f46A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 6, because occupancy 0.500 <= existing 0.500 in 2f46A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 10, because occupancy 0.500 <= existing 0.500 in 2f46A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 2f46A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 14, because occupancy 0.500 <= existing 0.500 in 2f46A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 253, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 255, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 257, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 380, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 382, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 384, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 386, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 388, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 390, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 715, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 719, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 729, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 784, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 786, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 788, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 790, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 792, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 794, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 806, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 808, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 810, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 812, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 814, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 816, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 847, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 849, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 851, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 853, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 855, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 857, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 859, because occupancy 0.200 <= existing 0.800 in 2f46A Skipped atom 861, because occupancy 0.200 <= existing 0.800 in 2f46A Skipped atom 863, because occupancy 0.200 <= existing 0.800 in 2f46A Skipped atom 865, because occupancy 0.200 <= existing 0.800 in 2f46A Skipped atom 867, because occupancy 0.200 <= existing 0.800 in 2f46A Skipped atom 869, because occupancy 0.200 <= existing 0.800 in 2f46A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 991, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 993, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 995, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 997, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 999, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1001, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1003, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1005, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1007, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1025, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1027, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1029, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1031, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1033, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1035, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1037, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1039, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1041, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1043, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1045, because occupancy 0.300 <= existing 0.700 in 2f46A Skipped atom 1109, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1111, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1113, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1115, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1117, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1119, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 2f46A Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 2f46A # 2f46A.25.88 read from T0506.t2k.many.frag # adding 2f46A to template set # found chain 2f46A in template set T0506 25 :EAVRVARDV 2f46A 88 :HDVETFRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17458 2absA expands to /projects/compbio/data/pdb/2abs.pdb.gz 2absA:Skipped atom 697, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 699, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 701, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 703, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 705, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 707, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 709, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 711, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 713, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 884, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 886, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 888, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 890, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 892, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 894, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 896, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 898, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 900, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 1191, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1193, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1195, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1197, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1199, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1201, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1230, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1231, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1233, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1234, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1236, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1237, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1239, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1240, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1242, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1243, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1245, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1246, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1248, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1249, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 2088, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2090, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2092, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2094, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2096, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2098, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2100, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2102, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2177, because occupancy 0.330 <= existing 0.670 in 2absA Skipped atom 2179, because occupancy 0.330 <= existing 0.670 in 2absA Skipped atom 2345, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2347, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2349, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2351, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2353, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2355, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2357, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2359, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2361, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2363, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2365, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2367, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2467, because occupancy 0.430 <= existing 0.570 in 2absA Skipped atom 2469, because occupancy 0.430 <= existing 0.570 in 2absA Skipped atom 2471, because occupancy 0.430 <= existing 0.570 in 2absA Skipped atom 2527, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2529, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2531, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2533, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2854, because occupancy 0.350 <= existing 0.350 in 2absA Skipped atom 2855, because occupancy 0.300 <= existing 0.350 in 2absA Skipped atom 2857, because occupancy 0.350 <= existing 0.350 in 2absA Skipped atom 2858, because occupancy 0.300 <= existing 0.350 in 2absA # 2absA.25.117 read from T0506.t2k.many.frag # adding 2absA to template set # found chain 2absA in template set T0506 25 :EAVRVARDV 2absA 98 :PRGQVLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17459 # 1xhnA.26.18 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 26 :AVRVARDVL 1xhnA 19 :AARVARFVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17460 # 2axoA.26.59 read from T0506.t2k.many.frag # found chain 2axoA in template set T0506 26 :AVRVARDVL 2axoA 60 :ADEALRKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17461 # 2afaA.26.275 read from T0506.t2k.many.frag # found chain 2afaA in template set T0506 26 :AVRVARDVL 2afaA 276 :LLEDAKGLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=17462 # 1sxrA.26.123 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 26 :AVRVARDVL 1sxrA 124 :ALQAAKDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17463 # 3thiA.26.187 read from T0506.t2k.many.frag # found chain 3thiA in template set T0506 26 :AVRVARDVL 3thiA 196 :VIRGLRLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17464 # 2b8nA.26.108 read from T0506.t2k.many.frag # found chain 2b8nA in template set T0506 26 :AVRVARDVL 2b8nA 97 :TIKTTRRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17465 # 1l6rA.26.26 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 26 :AVRVARDVL 1l6rA 24 :AIESIRSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17466 # 1mw9X.26.91 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 26 :AVRVARDVL 1mw9X 92 :VVSELKQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17467 # 1xg4A.26.65 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 26 :AVRVARDVL 1xg4A 67 :VLTDIRRIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17468 # 1xpjA.26.28 read from T0506.t2k.many.frag # found chain 1xpjA in template set T0506 26 :AVRVARDVL 1xpjA 29 :VIEQLREYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17469 # 1uhvA.26.34 read from T0506.t2k.many.frag # found chain 1uhvA in template set T0506 26 :AVRVARDVL 1uhvA 35 :YIETLKYVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17470 # 2bg5A.26.231 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 26 :AVRVARDVL 2bg5A 481 :ILRLVKMVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17471 # 1v9mA.26.79 read from T0506.t2k.many.frag # found chain 1v9mA in template set T0506 26 :AVRVARDVL 1v9mA 80 :AREAVRLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17472 # 1x9dA.26.383 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 26 :AVRVARDVL 1x9dA 545 :HMELAQELM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17473 # 1vefA.26.206 read from T0506.t2k.many.frag # found chain 1vefA in template set T0506 26 :AVRVARDVL 1vefA 207 :FLRAAREIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17474 # 1j79A.26.229 read from T0506.t2k.many.frag # found chain 1j79A in training set T0506 26 :AVRVARDVL 1j79A 230 :HQQALRELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17475 # 1ylhA.26.120 read from T0506.t2k.many.frag # found chain 1ylhA in template set T0506 26 :AVRVARDVL 1ylhA 101 :TWKSLRELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17476 # 1gqiA.26.490 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 26 :AVRVARDVL 1gqiA 495 :FIEPVKQMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17477 # 1q52A.26.64 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 26 :AVRVARDVL 1q52A 65 :TVDELYRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17478 # 2c27A.26.13 read from T0506.t2k.many.frag # found chain 2c27A in template set T0506 26 :AVRVARDVL 2c27A 14 :EQRSVRALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17479 1pswA expands to /projects/compbio/data/pdb/1psw.pdb.gz 1pswA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1pswA.26.201 read from T0506.t2k.many.frag # adding 1pswA to template set # found chain 1pswA in template set T0506 26 :AVRVARDVL 1pswA 202 :YAELAKQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17480 # 2f46A.26.89 read from T0506.t2k.many.frag # found chain 2f46A in template set T0506 26 :AVRVARDVL 2f46A 89 :DVETFRQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17481 # 2ewrA.26.17 read from T0506.t2k.many.frag # found chain 2ewrA in template set T0506 26 :AVRVARDVL 2ewrA 6 :YLRVLRKIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17482 1qwtA expands to /projects/compbio/data/pdb/1qwt.pdb.gz 1qwtA:# 1qwtA.26.84 read from T0506.t2k.many.frag # adding 1qwtA to template set # found chain 1qwtA in template set T0506 26 :AVRVARDVL 1qwtA 257 :VMSYVRHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17483 # 1umgA.26.23 read from T0506.t2k.many.frag # found chain 1umgA in training set T0506 26 :AVRVARDVL 1umgA 26 :TMAAANKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17484 # 1ujcA.26.26 read from T0506.t2k.many.frag # found chain 1ujcA in template set T0506 26 :AVRVARDVL 1ujcA 27 :GCDESRLMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17485 # 1ekqA.26.103 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 26 :AVRVARDVL 1ekqA 104 :RTESARDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=17486 # 1d0cA.26.86 read from T0506.t2k.many.frag # found chain 1d0cA in training set T0506 26 :AVRVARDVL 1d0cA 125 :LLSQARDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17487 # 1onwA.26.115 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 26 :AVRVARDVL 1onwA 116 :LLAKTRALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17488 # 2absA.26.118 read from T0506.t2k.many.frag # found chain 2absA in template set T0506 26 :AVRVARDVL 2absA 99 :RGQVLKELC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17489 # 1xhnA.27.19 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 27 :VRVARDVLH 1xhnA 20 :ARVARFVTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17490 # 2axoA.27.60 read from T0506.t2k.many.frag # found chain 2axoA in template set T0506 27 :VRVARDVLH 2axoA 61 :DEALRKMIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17491 # 1xg4A.27.66 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 27 :VRVARDVLH 1xg4A 68 :LTDIRRITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17492 # 1q52A.27.65 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 27 :VRVARDVLH 1q52A 66 :VDELYRVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17493 # 2afaA.27.276 read from T0506.t2k.many.frag # found chain 2afaA in template set T0506 27 :VRVARDVLH 2afaA 277 :LEDAKGLFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17494 # 1mw9X.27.92 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 27 :VRVARDVLH 1mw9X 93 :VSELKQLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17495 # 3thiA.27.188 read from T0506.t2k.many.frag # found chain 3thiA in template set T0506 27 :VRVARDVLH 3thiA 197 :IRGLRLLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17496 # 1sxrA.27.124 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 27 :VRVARDVLH 1sxrA 125 :LQAAKDLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17497 # 1uhvA.27.35 read from T0506.t2k.many.frag # found chain 1uhvA in template set T0506 27 :VRVARDVLH 1uhvA 36 :IETLKYVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17498 # 1l6rA.27.27 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 27 :VRVARDVLH 1l6rA 25 :IESIRSAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17499 # 2b8nA.27.109 read from T0506.t2k.many.frag # found chain 2b8nA in template set T0506 27 :VRVARDVLH 2b8nA 98 :IKTTRRVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17500 # 1onwA.27.116 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 27 :VRVARDVLH 1onwA 117 :LAKTRALNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17501 # 1v9mA.27.80 read from T0506.t2k.many.frag # found chain 1v9mA in template set T0506 27 :VRVARDVLH 1v9mA 81 :REAVRLLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17502 # 1xpjA.27.29 read from T0506.t2k.many.frag # found chain 1xpjA in template set T0506 27 :VRVARDVLH 1xpjA 30 :IEQLREYHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17503 # 1gqiA.27.491 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 27 :VRVARDVLH 1gqiA 496 :IEPVKQMML Number of specific fragments extracted= 1 number of extra gaps= 0 total=17504 # 1c7nA.27.185 read from T0506.t2k.many.frag # found chain 1c7nA in template set T0506 27 :VRVARDVLH 1c7nA 186 :LQKIKDIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17505 # 2f46A.27.90 read from T0506.t2k.many.frag # found chain 2f46A in template set T0506 27 :VRVARDVLH 2f46A 90 :VETFRQLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17506 # 1n9eA.27.68 read from T0506.t2k.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)H35 (1n9eA)H77 because H (helix) conformation "forbidden" or filtered. T0506 27 :VRVARDVL 1n9eA 69 :VQEVLDLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17507 # 1ylhA.27.121 read from T0506.t2k.many.frag # found chain 1ylhA in template set T0506 27 :VRVARDVLH 1ylhA 102 :WKSLRELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17508 # 1j79A.27.230 read from T0506.t2k.many.frag # found chain 1j79A in training set T0506 27 :VRVARDVLH 1j79A 231 :QQALRELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17509 # 1x9dA.27.384 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 27 :VRVARDVLH 1x9dA 546 :MELAQELME Number of specific fragments extracted= 1 number of extra gaps= 0 total=17510 # 1ekqA.27.104 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 27 :VRVARDVLH 1ekqA 105 :TESARDIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17511 # 1vefA.27.207 read from T0506.t2k.many.frag # found chain 1vefA in template set T0506 27 :VRVARDVLH 1vefA 208 :LRAAREITQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17512 # 2bg5A.27.232 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 27 :VRVARDVLH 2bg5A 482 :LRLVKMVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17513 # 1tjlA.27.36 read from T0506.t2k.many.frag # found chain 1tjlA in template set T0506 27 :VRVARDVLH 1tjlA 37 :LAHFRRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17514 # 1pswA.27.202 read from T0506.t2k.many.frag # found chain 1pswA in template set T0506 27 :VRVARDVLH 1pswA 203 :AELAKQLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17515 # 1umgA.27.24 read from T0506.t2k.many.frag # found chain 1umgA in training set T0506 27 :VRVARDVLH 1umgA 27 :MAAANKVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17516 # 1qwtA.27.85 read from T0506.t2k.many.frag # found chain 1qwtA in template set T0506 27 :VRVARDVLH 1qwtA 258 :MSYVRHVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17517 # 2absA.27.119 read from T0506.t2k.many.frag # found chain 2absA in template set T0506 27 :VRVARDVLH 2absA 100 :GQVLKELCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17518 # 2c27A.27.14 read from T0506.t2k.many.frag # found chain 2c27A in template set T0506 27 :VRVARDVLH 2c27A 15 :QRSVRALVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17519 # 1xhnA.28.20 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 28 :RVARDVLHT 1xhnA 21 :RVARFVTHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17520 # 2axoA.28.61 read from T0506.t2k.many.frag # found chain 2axoA in template set T0506 28 :RVARDVLHT 2axoA 62 :EALRKMIQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17521 # 1xg4A.28.67 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 28 :RVARDVLHT 1xg4A 69 :TDIRRITDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17522 # 1onwA.28.117 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 28 :RVARDVLHT 1onwA 118 :AKTRALNEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17523 # 1q52A.28.66 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 28 :RVARDVLHT 1q52A 67 :DELYRVLDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17524 # 3thiA.28.189 read from T0506.t2k.many.frag # found chain 3thiA in template set T0506 28 :RVARDVLHT 3thiA 198 :RGLRLLINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17525 # 2f46A.28.91 read from T0506.t2k.many.frag # found chain 2f46A in template set T0506 28 :RVARDVLHT 2f46A 91 :ETFRQLIGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17526 # 1uhvA.28.36 read from T0506.t2k.many.frag # found chain 1uhvA in template set T0506 28 :RVARDVLHT 1uhvA 37 :ETLKYVKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17527 # 1v9mA.28.81 read from T0506.t2k.many.frag # found chain 1v9mA in template set T0506 28 :RVARDVLHT 1v9mA 82 :EAVRLLLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17528 # 2afaA.28.277 read from T0506.t2k.many.frag # found chain 2afaA in template set T0506 28 :RVARDVLHT 2afaA 278 :EDAKGLFHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17529 # 1sxrA.28.125 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 28 :RVARDVLHT 1sxrA 126 :QAAKDLLAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17530 # 1l6rA.28.28 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 28 :RVARDVLHT 1l6rA 26 :ESIRSAEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17531 # 1mw9X.28.93 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 28 :RVARDVLHT 1mw9X 94 :SELKQLAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17532 # 1ekqA.28.105 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 28 :RVARDVLHT 1ekqA 106 :ESARDIIRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17533 # 2b8nA.28.110 read from T0506.t2k.many.frag # found chain 2b8nA in template set T0506 28 :RVARDVLHT 2b8nA 99 :KTTRRVLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17534 # 1gqiA.28.492 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 28 :RVARDVLHT 1gqiA 497 :EPVKQMMLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17535 # 1x9dA.28.385 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 28 :RVARDVLHT 1x9dA 547 :ELAQELMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=17536 # 2bg5A.28.233 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 28 :RVARDVLHT 2bg5A 483 :RLVKMVIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17537 # 1c7nA.28.186 read from T0506.t2k.many.frag # found chain 1c7nA in template set T0506 28 :RVARDVLHT 1c7nA 187 :QKIKDIVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17538 # 1pswA.28.203 read from T0506.t2k.many.frag # found chain 1pswA in template set T0506 28 :RVARDVLHT 1pswA 204 :ELAKQLIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17539 # 1j79A.28.231 read from T0506.t2k.many.frag # found chain 1j79A in training set T0506 28 :RVARDVLHT 1j79A 232 :QALRELVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17540 # 1eyeA.28.70 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 28 :RVARDVLHT 1eyeA 71 :PVVKELAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17541 # 1d0cA.28.88 read from T0506.t2k.many.frag # found chain 1d0cA in training set T0506 28 :RVARDVLHT 1d0cA 127 :SQARDFINQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17542 # 1tjyA.28.50 read from T0506.t2k.many.frag # found chain 1tjyA in training set T0506 28 :RVARDVLHT 1tjyA 75 :QLVNNFVNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=17543 # 1qwtA.28.86 read from T0506.t2k.many.frag # found chain 1qwtA in template set T0506 28 :RVARDVLHT 1qwtA 259 :SYVRHVLSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17544 # 2absA.28.120 read from T0506.t2k.many.frag # found chain 2absA in template set T0506 28 :RVARDVLHT 2absA 101 :QVLKELCDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17545 # 1fobA.28.63 read from T0506.t2k.many.frag # found chain 1fobA in training set T0506 28 :RVARDVLHT 1fobA 64 :ELAKRVKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17546 # 1tjlA.28.37 read from T0506.t2k.many.frag # found chain 1tjlA in template set T0506 28 :RVARDVLHT 1tjlA 38 :AHFRRILEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17547 # 1xpjA.28.30 read from T0506.t2k.many.frag # found chain 1xpjA in template set T0506 28 :RVARDVLHT 1xpjA 31 :EQLREYHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17548 # 1ylhA.28.122 read from T0506.t2k.many.frag # found chain 1ylhA in template set T0506 28 :RVARDVLHT 1ylhA 103 :KSLRELVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17549 # 1xhnA.29.21 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 29 :VARDVLHTS 1xhnA 22 :VARFVTHVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17550 # 2axoA.29.62 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 2axoA 63 :ALRKMIQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=17551 # 1xg4A.29.68 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 29 :VARDVLHTS 1xg4A 70 :DIRRITDVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17552 # 1mw9X.29.94 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 29 :VARDVLHTS 1mw9X 95 :ELKQLAEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17553 # 2f46A.29.92 read from T0506.t2k.many.frag # found chain 2f46A in template set T0506 29 :VARDVLHTS 2f46A 92 :TFRQLIGQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17554 # 1q52A.29.67 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 29 :VARDVLHTS 1q52A 68 :ELYRVLDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17555 # 1gqiA.29.493 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 29 :VARDVLHTS 1gqiA 498 :PVKQMMLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17556 # 1ekqA.29.106 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 29 :VARDVLHTS 1ekqA 107 :SARDIIREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17557 # 1c7nA.29.187 read from T0506.t2k.many.frag # found chain 1c7nA in template set T0506 29 :VARDVLHTS 1c7nA 188 :KIKDIVLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17558 # 1eyeA.29.71 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 29 :VARDVLHTS 1eyeA 72 :VVKELAAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17559 # 2afaA.29.278 read from T0506.t2k.many.frag # found chain 2afaA in template set T0506 29 :VARDVLHTS 2afaA 279 :DAKGLFHAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17560 # 1sxrA.29.126 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 29 :VARDVLHTS 1sxrA 127 :AAKDLLACG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17561 # 1pswA.29.204 read from T0506.t2k.many.frag # found chain 1pswA in template set T0506 29 :VARDVLHTS 1pswA 205 :LAKQLIDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17562 # 1v9mA.29.82 read from T0506.t2k.many.frag # found chain 1v9mA in template set T0506 29 :VARDVLHTS 1v9mA 83 :AVRLLLLRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17563 # 1x9dA.29.386 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 29 :VARDVLHTS 1x9dA 548 :LAQELMETC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17564 # 2b8nA.29.111 read from T0506.t2k.many.frag # found chain 2b8nA in template set T0506 29 :VARDVLHTS 2b8nA 100 :TTRRVLELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17565 # 1tjyA.29.51 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)S37 (1tjyA)G84 because T (delta_L) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 1tjyA 76 :LVNNFVNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17566 # 2absA.29.121 read from T0506.t2k.many.frag # found chain 2absA in template set T0506 29 :VARDVLHTS 2absA 102 :VLKELCDKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17567 # 1uhvA.29.37 read from T0506.t2k.many.frag # found chain 1uhvA in template set T0506 29 :VARDVLHTS 1uhvA 38 :TLKYVKENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17568 # 1yc5A.29.172 read from T0506.t2k.many.frag # found chain 1yc5A in template set Warning: unaligning (T0506)S37 (1yc5A)A181 because P (beta_P) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 1yc5A 173 :EAIGLSSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=17569 # 3thiA.29.190 read from T0506.t2k.many.frag # found chain 3thiA in template set T0506 29 :VARDVLHTS 3thiA 199 :GLRLLINMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17570 2f5tX expands to /projects/compbio/data/pdb/2f5t.pdb.gz 2f5tX:Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 222, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 224, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 866, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1060, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1064, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1066, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1785, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1789, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1791, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1793, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1795, because occupancy 0.500 <= existing 0.500 in 2f5tX Skipped atom 1797, because occupancy 0.500 <= existing 0.500 in 2f5tX # 2f5tX.29.13 read from T0506.t2k.many.frag # adding 2f5tX to template set # found chain 2f5tX in template set T0506 29 :VARDVLHTS 2f5tX 123 :MFRESLYSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17571 # 1tjlA.29.38 read from T0506.t2k.many.frag # found chain 1tjlA in template set T0506 29 :VARDVLHTS 1tjlA 39 :HFRRILEAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17572 2ar0A expands to /projects/compbio/data/pdb/2ar0.pdb.gz 2ar0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ar0A.29.325 read from T0506.t2k.many.frag # adding 2ar0A to template set # found chain 2ar0A in template set T0506 29 :VARDVLHTS 2ar0A 326 :IRRDLMDKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=17573 # 1q74A.29.119 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 29 :VARDVLHTS 1q74A 120 :ALVAIIREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17574 # 1onwA.29.118 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 29 :VARDVLHTS 1onwA 119 :KTRALNEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17575 # 1j79A.29.232 read from T0506.t2k.many.frag # found chain 1j79A in training set T0506 29 :VARDVLHTS 1j79A 233 :ALRELVASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17576 # 1xgkA.29.90 read from T0506.t2k.many.frag # found chain 1xgkA in training set T0506 29 :VARDVLHTS 1xgkA 91 :IGKDLADAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17577 # 2bg5A.29.234 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 29 :VARDVLHTS 2bg5A 484 :LVKMVIDAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17578 # 1n9eA.29.70 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 29 :VARDVLHTS 1n9eA 71 :EVLDLLHST Number of specific fragments extracted= 1 number of extra gaps= 0 total=17579 # 1xhnA.30.22 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)H35 (1xhnA)H28 because H (helix) conformation "forbidden" or filtered. T0506 30 :ARDVL 1xhnA 23 :ARFVT T0506 36 :TSR 1xhnA 29 :VSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17581 # 2axoA.30.63 read from T0506.t2k.many.frag # found chain 2axoA in template set T0506 30 :ARDVLHTSR 2axoA 64 :LRKMIQKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17582 # 1xg4A.30.69 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 30 :ARDVLHTSR 1xg4A 71 :IRRITDVCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17583 # 2f46A.30.93 read from T0506.t2k.many.frag # found chain 2f46A in template set T0506 30 :ARDVLHTSR 2f46A 93 :FRQLIGQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17584 # 1mw9X.30.95 read from T0506.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0506)S37 (1mw9X)A103 because P (beta_P) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1mw9X 96 :LKQLAEK T0506 38 :R 1mw9X 104 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=17586 # 1q52A.30.68 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 30 :ARDVLHTSR 1q52A 69 :LYRVLDHAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17587 # 1ekqA.30.107 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 30 :ARDVLHTSR 1ekqA 108 :ARDIIREVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17588 # 1onwA.30.119 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 30 :ARDVLHTSR 1onwA 120 :TRALNEEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17589 # 1eyeA.30.72 read from T0506.t2k.many.frag # found chain 1eyeA in training set Warning: unaligning (T0506)S37 (1eyeA)G80 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1eyeA)I81 because P (beta_P) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1eyeA 73 :VKELAAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17590 # 1tjyA.30.52 read from T0506.t2k.many.frag # found chain 1tjyA in training set T0506 30 :ARDVLHTSR 1tjyA 77 :VNNFVNQGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17591 # 1pswA.30.205 read from T0506.t2k.many.frag # found chain 1pswA in template set T0506 30 :ARDVLHTSR 1pswA 206 :AKQLIDEGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17592 # 1q74A.30.120 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 30 :ARDVLHTSR 1q74A 121 :LVAIIRELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17593 # 2ar0A.30.326 read from T0506.t2k.many.frag # found chain 2ar0A in template set T0506 30 :ARDVLHTSR 2ar0A 327 :RRDLMDKCH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17594 # 2afaA.30.279 read from T0506.t2k.many.frag # found chain 2afaA in template set Warning: unaligning (T0506)H35 (2afaA)H285 because H (helix) conformation "forbidden" or filtered. T0506 30 :ARDVL 2afaA 280 :AKGLF T0506 36 :TSR 2afaA 286 :ATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17596 # 1uhvA.30.38 read from T0506.t2k.many.frag # found chain 1uhvA in template set T0506 30 :ARDVLHTSR 1uhvA 39 :LKYVKENID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17597 # 1c7nA.30.188 read from T0506.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)R38 (1c7nA)D197 because G (3-10) conformation "forbidden" or filtered. T0506 30 :ARDVLHTS 1c7nA 189 :IKDIVLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17598 # 1gqiA.30.494 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 30 :ARDVLHTSR 1gqiA 499 :VKQMMLVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17599 # 1xgkA.30.91 read from T0506.t2k.many.frag # found chain 1xgkA in training set T0506 30 :ARDVLHTSR 1xgkA 92 :GKDLADAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17600 # 1x9dA.30.387 read from T0506.t2k.many.frag # found chain 1x9dA in training set T0506 30 :ARDVLHTSR 1x9dA 549 :AQELMETCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17601 # 2absA.30.122 read from T0506.t2k.many.frag # found chain 2absA in template set T0506 30 :ARDVLHTSR 2absA 103 :LKELCDKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17602 1yjsA expands to /projects/compbio/data/pdb/1yjs.pdb.gz 1yjsA:# 1yjsA.30.281 read from T0506.t2k.many.frag # adding 1yjsA to template set # found chain 1yjsA in template set T0506 30 :ARDVLHTSR 1yjsA 282 :AKRVVDNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17603 # 2f5tX.30.14 read from T0506.t2k.many.frag # found chain 2f5tX in template set T0506 30 :ARDVLHTSR 2f5tX 124 :FRESLYSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17604 # 1yc5A.30.173 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 30 :ARDVLHTSR 1yc5A 174 :AIGLSSRAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17605 # 1v9mA.30.83 read from T0506.t2k.many.frag # found chain 1v9mA in template set T0506 30 :ARDVLHTSR 1v9mA 84 :VRLLLLRND Number of specific fragments extracted= 1 number of extra gaps= 0 total=17606 # 1sxrA.30.127 read from T0506.t2k.many.frag # found chain 1sxrA in training set T0506 30 :ARDVLHTSR 1sxrA 128 :AKDLLACGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17607 2bvcA expands to /projects/compbio/data/pdb/2bvc.pdb.gz 2bvcA:# 2bvcA.30.313 read from T0506.t2k.many.frag # adding 2bvcA to template set # found chain 2bvcA in template set Warning: unaligning (T0506)H35 (2bvcA)H311 because H (helix) conformation "forbidden" or filtered. T0506 30 :ARDVL 2bvcA 306 :IGGLL T0506 36 :TSR 2bvcA 312 :HAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17609 # 1l1lA.30.459 read from T0506.t2k.many.frag # found chain 1l1lA in training set T0506 30 :ARDVLHTSR 1l1lA 460 :SREIIQKNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17610 # 1tjlA.30.39 read from T0506.t2k.many.frag # found chain 1tjlA in template set T0506 30 :ARDVLHTSR 1tjlA 40 :FRRILEAWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17611 1rlzA expands to /projects/compbio/data/pdb/1rlz.pdb.gz 1rlzA:# 1rlzA.30.115 read from T0506.t2k.many.frag # adding 1rlzA to template set # found chain 1rlzA in template set Warning: unaligning (T0506)S37 (1rlzA)N123 because L (left) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1rlzA 116 :IRYLVQH T0506 38 :R 1rlzA 124 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=17613 1yrbA expands to /projects/compbio/data/pdb/1yrb.pdb.gz 1yrbA:WARNING: atom 113 has residue number 1 < previous residue 500 in 1yrbA Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 591, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 593, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 595, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 597, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 738, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 742, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1076, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1274, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1292, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1294, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1296, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1298, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1698, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1700, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1702, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1704, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1706, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1708, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1804, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1806, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1810, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1829, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1831, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1837, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1845, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1847, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1928, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1930, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1932, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1934, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1936, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1938, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1940, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 2052, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 2056, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 2058, because occupancy 0.500 <= existing 0.500 in 1yrbA # 1yrbA.30.101 read from T0506.t2k.many.frag # adding 1yrbA to template set # found chain 1yrbA in template set T0506 30 :ARDVLHTSR 1yrbA 88 :ILRLEKEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=17614 # 1xhnA.31.23 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 31 :RDVLHTSRT 1xhnA 24 :RFVTHVSDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17615 # 1mw9X.31.96 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 31 :RDVLHTSRT 1mw9X 97 :KQLAEKADH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17616 # 2f46A.31.94 read from T0506.t2k.many.frag # found chain 2f46A in template set T0506 31 :RDVLHTSRT 2f46A 94 :RQLIGQAEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17617 # 2axoA.31.64 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 2axoA 65 :RKMIQK T0506 38 :RT 2axoA 72 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17619 # 1xg4A.31.70 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 31 :RDVLHTSRT 1xg4A 72 :RRITDVCSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17620 # 1ekqA.31.108 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 31 :RDVLHTSRT 1ekqA 109 :RDIIREVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17621 # 1c7nA.31.189 read from T0506.t2k.many.frag # found chain 1c7nA in template set T0506 31 :RDVLHTSRT 1c7nA 190 :KDIVLKSDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17622 # 2ar0A.31.327 read from T0506.t2k.many.frag # found chain 2ar0A in template set T0506 31 :RDVLHTSRT 2ar0A 328 :RDLMDKCHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17623 # 1tjyA.31.53 read from T0506.t2k.many.frag # found chain 1tjyA in training set T0506 31 :RDVLHTSRT 1tjyA 78 :NNFVNQGYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17624 # 1eyeA.31.73 read from T0506.t2k.many.frag # found chain 1eyeA in training set Warning: unaligning (T0506)S37 (1eyeA)G80 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1eyeA 74 :KELAAQ T0506 38 :RT 1eyeA 81 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17626 # 2f5tX.31.15 read from T0506.t2k.many.frag # found chain 2f5tX in template set T0506 31 :RDVLHTSRT 2f5tX 125 :RESLYSAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17627 # 1yrbA.31.102 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 31 :RDVLHTSRT 1yrbA 89 :LRLEKENDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=17628 # 1gqiA.31.495 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 31 :RDVLHTSRT 1gqiA 500 :KQMMLVSRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17629 # 1q74A.31.121 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 31 :RDVLHTSRT 1q74A 122 :VAIIRELRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17630 1uz5A expands to /projects/compbio/data/pdb/1uz5.pdb.gz 1uz5A:Skipped atom 2328, because occupancy 0.500 <= existing 0.500 in 1uz5A Skipped atom 2330, because occupancy 0.500 <= existing 0.500 in 1uz5A Skipped atom 2332, because occupancy 0.500 <= existing 0.500 in 1uz5A Skipped atom 2334, because occupancy 0.500 <= existing 0.500 in 1uz5A # 1uz5A.31.240 read from T0506.t2k.many.frag # adding 1uz5A to template set # found chain 1uz5A in template set T0506 31 :RDVLHTSRT 1uz5A 241 :EKAVNVGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17631 # 1yc5A.31.174 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 31 :RDVLHTSRT 1yc5A 175 :IGLSSRASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17632 # 1q52A.31.69 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 31 :RDVLHTSRT 1q52A 70 :YRVLDHARM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17633 1w4rA expands to /projects/compbio/data/pdb/1w4r.pdb.gz 1w4rA:Skipped atom 115, because occupancy 0.400 <= existing 0.600 in 1w4rA Skipped atom 117, because occupancy 0.400 <= existing 0.600 in 1w4rA Skipped atom 119, because occupancy 0.400 <= existing 0.600 in 1w4rA Skipped atom 121, because occupancy 0.400 <= existing 0.600 in 1w4rA Skipped atom 123, because occupancy 0.400 <= existing 0.600 in 1w4rA Skipped atom 125, because occupancy 0.400 <= existing 0.600 in 1w4rA Skipped atom 306, because occupancy 0.350 <= existing 0.650 in 1w4rA Skipped atom 308, because occupancy 0.350 <= existing 0.650 in 1w4rA Skipped atom 310, because occupancy 0.350 <= existing 0.650 in 1w4rA Skipped atom 312, because occupancy 0.350 <= existing 0.650 in 1w4rA Skipped atom 314, because occupancy 0.350 <= existing 0.650 in 1w4rA # 1w4rA.31.110 read from T0506.t2k.many.frag # adding 1w4rA to template set # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1w4rA 110 :EAMANA T0506 38 :RT 1w4rA 117 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17635 # 1kgdA.31.89 read from T0506.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)S37 (1kgdA)G825 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1kgdA 819 :RKIHEQ T0506 38 :RT 1kgdA 826 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17637 # 1l1lA.31.460 read from T0506.t2k.many.frag # found chain 1l1lA in training set T0506 31 :RDVLHTSRT 1l1lA 461 :REIIQKNRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=17638 # 1rttA.31.66 read from T0506.t2k.many.frag # found chain 1rttA in training set T0506 31 :RDVLHTSRT 1rttA 67 :REQIRAADA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17639 # 1pswA.31.206 read from T0506.t2k.many.frag # found chain 1pswA in template set Warning: unaligning (T0506)S37 (1pswA)G213 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1pswA)Y214 because P (beta_P) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1pswA 207 :KQLIDE T0506 39 :T 1pswA 215 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=17641 # 1rlzA.31.116 read from T0506.t2k.many.frag # found chain 1rlzA in template set Warning: unaligning (T0506)S37 (1rlzA)N123 because L (left) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1rlzA 117 :RYLVQH T0506 38 :RT 1rlzA 124 :MV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17643 # 1onwA.31.120 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 31 :RDVLHTSRT 1onwA 121 :RALNEEGIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17644 # 1q7zA.31.346 read from T0506.t2k.many.frag # found chain 1q7zA in training set T0506 31 :RDVLHTSRT 1q7zA 347 :KTQVEKGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17645 # 1yleA.31.17 read from T0506.t2k.many.frag # found chain 1yleA in training set T0506 31 :RDVLHTSRT 1yleA 16 :QRLAADSPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17646 # 1l6rA.31.31 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)S37 (1l6rA)G35 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1l6rA 29 :RSAEKK T0506 38 :RT 1l6rA 36 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17648 # 2absA.31.123 read from T0506.t2k.many.frag # found chain 2absA in template set Warning: unaligning (T0506)R38 (2absA)G111 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHTS 2absA 104 :KELCDKE T0506 39 :T 2absA 112 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17650 # 1f74A.31.122 read from T0506.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)R38 (1f74A)G130 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHTS 1f74A 123 :DTIIAET T0506 39 :T 1f74A 131 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=17652 1qoyA expands to /projects/compbio/data/pdb/1qoy.pdb.gz 1qoyA:# 1qoyA.31.28 read from T0506.t2k.many.frag # adding 1qoyA to template set # found chain 1qoyA in template set T0506 31 :RDVLHTSRT 1qoyA 14 :KNAIETADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17653 # 1xhnA.32.24 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)R38 (1xhnA)D31 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 32 :DVLHTS 1xhnA 25 :FVTHVS T0506 39 :T 1xhnA 32 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=17655 # 1mw9X.32.97 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 32 :DVLHTSRTA 1mw9X 98 :QLAEKADHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17656 # 1xg4A.32.71 read from T0506.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)A40 (1xg4A)P81 because P (beta_P) conformation "forbidden" or filtered. T0506 32 :DVLHTSRT 1xg4A 73 :RITDVCSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17657 # 1rttA.32.67 read from T0506.t2k.many.frag # found chain 1rttA in training set T0506 32 :DVLHTSRTA 1rttA 68 :EQIRAADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17658 # 1ekqA.32.109 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 32 :DVLHTSRTA 1ekqA 110 :DIIREVRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17659 # 2ar0A.32.328 read from T0506.t2k.many.frag # found chain 2ar0A in template set Warning: unaligning (T0506)A40 (2ar0A)H337 because G (3-10) conformation "forbidden" or filtered. T0506 32 :DVLHTSRT 2ar0A 329 :DLMDKCHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17660 # 2f46A.32.95 read from T0506.t2k.many.frag # found chain 2f46A in template set Warning: unaligning (T0506)A40 (2f46A)P103 because C (cis) conformation "forbidden" or filtered. T0506 32 :DVLHTSRT 2f46A 95 :QLIGQAEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=17661 # 2axoA.32.65 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (2axoA)D72 because G (3-10) conformation "forbidden" or filtered. T0506 32 :DVLHT 2axoA 66 :KMIQK T0506 39 :TA 2axoA 73 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17663 # 1uz5A.32.241 read from T0506.t2k.many.frag # found chain 1uz5A in template set T0506 32 :DVLHTSRTA 1uz5A 242 :KAVNVGDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17664 # 1yrbA.32.103 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 32 :DVLHTSRTA 1yrbA 90 :RLEKENDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17665 # 1tjyA.32.54 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)S37 (1tjyA)G84 because T (delta_L) conformation "forbidden" or filtered. T0506 32 :DVLHT 1tjyA 79 :NFVNQ T0506 38 :RTA 1tjyA 85 :YDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17667 # 1c7nA.32.190 read from T0506.t2k.many.frag # found chain 1c7nA in template set T0506 32 :DVLHTSRTA 1c7nA 191 :DIVLKSDLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17668 # 2f5tX.32.16 read from T0506.t2k.many.frag # found chain 2f5tX in template set T0506 32 :DVLHTSRTA 2f5tX 126 :ESLYSAKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17669 # 1q74A.32.122 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 32 :DVLHTSRTA 1q74A 123 :AIIRELRPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=17670 # 1yc5A.32.175 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 32 :DVLHTSRTA 1yc5A 176 :GLSSRASLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=17671 # 1eyeA.32.74 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 32 :DVLHTSRTA 1eyeA 75 :ELAAQGITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17672 # 1yleA.32.18 read from T0506.t2k.many.frag # found chain 1yleA in training set T0506 32 :DVLHTSRTA 1yleA 17 :RLAADSPVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17673 # 1l1lA.32.461 read from T0506.t2k.many.frag # found chain 1l1lA in training set T0506 32 :DVLHTSRTA 1l1lA 462 :EIIQKNRRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17674 # 1gqiA.32.496 read from T0506.t2k.many.frag # found chain 1gqiA in training set T0506 32 :DVLHTSRTA 1gqiA 501 :QMMLVSREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17675 # 1kgdA.32.90 read from T0506.t2k.many.frag # found chain 1kgdA in training set T0506 32 :DVLHTSRTA 1kgdA 820 :KIHEQGLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17676 # 1w4rA.32.111 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. T0506 32 :DVLHT 1w4rA 111 :AMANA T0506 38 :RTA 1w4rA 117 :KTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17678 # 1tfzA.32.108 read from T0506.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0506)R38 (1tfzA)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1tfzA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0506 32 :DVLHTS 1tfzA 109 :SFFSSH T0506 39 :T 1tfzA 116 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=17680 # 1onwA.32.121 read from T0506.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)S37 (1onwA)G127 because T (delta_L) conformation "forbidden" or filtered. T0506 32 :DVLHT 1onwA 122 :ALNEE T0506 38 :RTA 1onwA 128 :ISA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17682 # 1f74A.32.123 read from T0506.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)R38 (1f74A)G130 because T (delta_L) conformation "forbidden" or filtered. T0506 32 :DVLHTS 1f74A 124 :TIIAET T0506 39 :TA 1f74A 131 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17684 # 1gvfA.32.161 read from T0506.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0506)R38 (1gvfA)G168 because L (left) conformation "forbidden" or filtered. T0506 32 :DVLHTS 1gvfA 162 :RFVELT T0506 39 :TA 1gvfA 169 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17686 # 1pswA.32.207 read from T0506.t2k.many.frag # found chain 1pswA in template set T0506 32 :DVLHTSRTA 1pswA 208 :QLIDEGYQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17687 # 1dljA.32.102 read from T0506.t2k.many.frag # found chain 1dljA in training set Warning: unaligning (T0506)R38 (1dljA)S109 because G (3-10) conformation "forbidden" or filtered. T0506 32 :DVLHTS 1dljA 103 :EVLSVN T0506 39 :TA 1dljA 110 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17689 # 1qoyA.32.29 read from T0506.t2k.many.frag # found chain 1qoyA in template set T0506 32 :DVLHTSRTA 1qoyA 15 :NAIETADGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17690 1nh1A expands to /projects/compbio/data/pdb/1nh1.pdb.gz 1nh1A:# 1nh1A.32.67 read from T0506.t2k.many.frag # adding 1nh1A to template set # found chain 1nh1A in template set T0506 32 :DVLHTSRTA 1nh1A 68 :SMYNSIRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17691 # 1uhvA.32.40 read from T0506.t2k.many.frag # found chain 1uhvA in template set T0506 32 :DVLHTSRTA 1uhvA 41 :YVKENIDFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=17692 # 1xhnA.33.25 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 33 :VLHTSRT 1xhnA 26 :VTHVSDW T0506 41 :A 1xhnA 34 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=17694 # 1rttA.33.68 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 33 :VLHTSRTA 1rttA 69 :QIRAADAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17695 # 1yrbA.33.104 read from T0506.t2k.many.frag # found chain 1yrbA in template set Warning: unaligning (T0506)A40 (1yrbA)V98 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHTSRT 1yrbA 91 :LEKENDY T0506 41 :A 1yrbA 99 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17697 # 1mw9X.33.98 read from T0506.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0506)A41 (1mw9X)Y107 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHTSRTA 1mw9X 99 :LAEKADHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17698 # 1uz5A.33.242 read from T0506.t2k.many.frag # found chain 1uz5A in template set T0506 33 :VLHTSRTAA 1uz5A 243 :AVNVGDVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17699 # 2axoA.33.66 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLHT 2axoA 67 :MIQK T0506 38 :RTAA 2axoA 72 :DVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17701 # 1xg4A.33.72 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 33 :VLHTSRTAA 1xg4A 74 :ITDVCSLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17702 # 1ekqA.33.110 read from T0506.t2k.many.frag # found chain 1ekqA in training set T0506 33 :VLHTSRTAA 1ekqA 111 :IIREVRLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17703 # 1tjyA.33.55 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)S37 (1tjyA)G84 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLHT 1tjyA 80 :FVNQ T0506 38 :RTAA 1tjyA 85 :YDAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17705 # 2ar0A.33.329 read from T0506.t2k.many.frag # found chain 2ar0A in template set T0506 33 :VLHTSRTAA 2ar0A 330 :LMDKCHLHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17706 # 1kgdA.33.91 read from T0506.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)S37 (1kgdA)G825 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLHT 1kgdA 821 :IHEQ T0506 38 :RTAA 1kgdA 826 :LIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17708 # 1c7nA.33.191 read from T0506.t2k.many.frag # found chain 1c7nA in template set T0506 33 :VLHTSRTAA 1c7nA 192 :IVLKSDLML Number of specific fragments extracted= 1 number of extra gaps= 0 total=17709 # 2f46A.33.96 read from T0506.t2k.many.frag # found chain 2f46A in template set Warning: unaligning (T0506)R38 (2f46A)E101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (2f46A)P103 because C (cis) conformation "forbidden" or filtered. T0506 33 :VLHTS 2f46A 96 :LIGQA T0506 39 :T 2f46A 102 :Y T0506 41 :A 2f46A 104 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=17712 1wdpA expands to /projects/compbio/data/pdb/1wdp.pdb.gz 1wdpA:Skipped atom 486, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 488, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 490, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 492, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 494, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 582, because occupancy 0.500 <= existing 0.500 in 1wdpA Skipped atom 584, because occupancy 0.500 <= existing 0.500 in 1wdpA Skipped atom 1698, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1700, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1702, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1704, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1706, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1936, because occupancy 0.470 <= existing 0.530 in 1wdpA Skipped atom 1938, because occupancy 0.470 <= existing 0.530 in 1wdpA Skipped atom 1986, because occupancy 0.290 <= existing 0.700 in 1wdpA Skipped atom 1988, because occupancy 0.290 <= existing 0.700 in 1wdpA Skipped atom 2249, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2251, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2253, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2255, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2669, because occupancy 0.400 <= existing 0.600 in 1wdpA Skipped atom 2671, because occupancy 0.400 <= existing 0.600 in 1wdpA Skipped atom 2864, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 2866, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 3422, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3424, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3426, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3428, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3430, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3461, because occupancy 0.410 <= existing 0.590 in 1wdpA Skipped atom 3463, because occupancy 0.410 <= existing 0.590 in 1wdpA Skipped atom 3465, because occupancy 0.410 <= existing 0.590 in 1wdpA Skipped atom 3467, because occupancy 0.410 <= existing 0.590 in 1wdpA # 1wdpA.33.41 read from T0506.t2k.many.frag # adding 1wdpA to template set # found chain 1wdpA in template set Warning: unaligning (T0506)S37 (1wdpA)G46 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLHT 1wdpA 42 :LRAA T0506 38 :RTAA 1wdpA 47 :VDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17714 # 1onwA.33.122 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 33 :VLHTSRTAA 1onwA 123 :LNEEGISAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=17715 # 1tfzA.33.109 read from T0506.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0506)R38 (1tfzA)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1tfzA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0506 33 :VLHTS 1tfzA 110 :FFSSH T0506 39 :T 1tfzA 116 :L T0506 41 :A 1tfzA 118 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=17718 # 1l1lA.33.462 read from T0506.t2k.many.frag # found chain 1l1lA in training set Warning: unaligning (T0506)A41 (1l1lA)G471 because D (zeta) conformation "forbidden" or filtered. T0506 33 :VLHTSRTA 1l1lA 463 :IIQKNRRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17719 # 1q74A.33.123 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)R38 (1q74A)R129 because L (left) conformation "forbidden" or filtered. T0506 33 :VLHTS 1q74A 124 :IIREL T0506 39 :TAA 1q74A 130 :PHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17721 # 1eyeA.33.75 read from T0506.t2k.many.frag # found chain 1eyeA in training set Warning: unaligning (T0506)S37 (1eyeA)G80 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1eyeA)I81 because P (beta_P) conformation "forbidden" or filtered. T0506 33 :VLHT 1eyeA 76 :LAAQ T0506 39 :TAA 1eyeA 82 :TVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17723 # 1yc5A.33.176 read from T0506.t2k.many.frag # found chain 1yc5A in template set T0506 33 :VLHTSRTAA 1yc5A 177 :LSSRASLMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17724 # 2f5tX.33.17 read from T0506.t2k.many.frag # found chain 2f5tX in template set T0506 33 :VLHTSRTAA 2f5tX 127 :SLYSAKNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17725 # 1gvfA.33.162 read from T0506.t2k.many.frag # found chain 1gvfA in training set Warning: unaligning (T0506)R38 (1gvfA)G168 because L (left) conformation "forbidden" or filtered. T0506 33 :VLHTS 1gvfA 163 :FVELT T0506 39 :TAA 1gvfA 169 :VDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17727 # 1p1mA.33.266 read from T0506.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0506)A41 (1p1mA)T275 because Y (epsilon') conformation "forbidden" or filtered. T0506 33 :VLHTSRTA 1p1mA 267 :MIEHGMKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17728 # 1w4rA.33.112 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLHT 1w4rA 112 :MANA T0506 38 :RTAA 1w4rA 117 :KTVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17730 # 1yleA.33.19 read from T0506.t2k.many.frag # found chain 1yleA in training set T0506 33 :VLHTSRTAA 1yleA 18 :LAADSPVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17731 1w9hA expands to /projects/compbio/data/pdb/1w9h.pdb.gz 1w9hA:# 1w9hA.33.102 read from T0506.t2k.many.frag # adding 1w9hA to template set # found chain 1w9hA in template set Warning: unaligning (T0506)S37 (1w9hA)G107 because L (left) conformation "forbidden" or filtered. T0506 33 :VLHT 1w9hA 103 :AIDT T0506 38 :RTAA 1w9hA 108 :VDGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17733 # 1rx0A.33.126 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)T36 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. T0506 33 :VLH 1rx0A 127 :LCT T0506 37 :SRTAA 1rx0A 131 :EKFAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17735 # 1usgA.33.87 read from T0506.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0506)S37 (1usgA)E92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1usgA)M96 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHT 1usgA 88 :IYED T0506 38 :RTA 1usgA 93 :GIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=17737 # 1l6rA.33.33 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 33 :VLHTSRTAA 1l6rA 31 :AEKKGLTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17738 1bykA expands to /projects/compbio/data/pdb/1byk.pdb.gz 1bykA:# 1bykA.33.53 read from T0506.t2k.many.frag # adding 1bykA to template set # found chain 1bykA in template set Warning: unaligning (T0506)S37 (1bykA)N118 because L (left) conformation "forbidden" or filtered. T0506 33 :VLHT 1bykA 114 :LKRR T0506 38 :RTAA 1bykA 119 :IDGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17740 # 1xhnA.34.26 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)R38 (1xhnA)D31 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :LHTS 1xhnA 27 :THVS T0506 39 :T 1xhnA 32 :W T0506 41 :AL 1xhnA 34 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=17743 # 1rttA.34.69 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)T39 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 34 :LHTSR 1rttA 70 :IRAAD T0506 40 :A 1rttA 76 :L T0506 42 :L 1rttA 78 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=17746 # 1mw9X.34.99 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 34 :LHTSRTAAL 1mw9X 100 :AEKADHIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17747 # 1yrbA.34.105 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 34 :LHTSRTAAL 1yrbA 92 :EKENDYVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17748 # 1uz5A.34.243 read from T0506.t2k.many.frag # found chain 1uz5A in template set T0506 34 :LHTSRTAAL 1uz5A 244 :VNVGDVVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17749 # 1tjyA.34.56 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)R38 (1tjyA)Y85 because P (beta_P) conformation "forbidden" or filtered. T0506 34 :LHTS 1tjyA 81 :VNQG T0506 39 :TAAL 1tjyA 86 :DAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=17751 # 1kgdA.34.92 read from T0506.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)S37 (1kgdA)G825 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1kgdA)A828 because P (beta_P) conformation "forbidden" or filtered. T0506 34 :LHT 1kgdA 822 :HEQ T0506 38 :RT 1kgdA 826 :LI T0506 41 :AL 1kgdA 829 :IL Number of specific fragments extracted= 3 number of extra gaps= 2 total=17754 # 2axoA.34.67 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 2axoA 68 :IQK T0506 38 :RTAAL 2axoA 72 :DVVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17756 # 1p1mA.34.267 read from T0506.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0506)S37 (1p1mA)G271 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1p1mA)T275 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :LHT 1p1mA 268 :IEH T0506 38 :RTA 1p1mA 272 :MKV T0506 42 :L 1p1mA 276 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=17759 1c93A expands to /projects/compbio/data/pdb/1c93.pdb.gz 1c93A:# 1c93A.34.74 read from T0506.t2k.many.frag # adding 1c93A to template set # found chain 1c93A in template set Warning: unaligning (T0506)S37 (1c93A)G83 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1c93A)I84 because P (beta_P) conformation "forbidden" or filtered. T0506 34 :LHT 1c93A 80 :QQQ T0506 39 :TAAL 1c93A 85 :KVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17761 # 1l6rA.34.34 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)R38 (1l6rA)L36 because P (beta_P) conformation "forbidden" or filtered. T0506 34 :LHTS 1l6rA 32 :EKKG T0506 39 :TAAL 1l6rA 37 :TVSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17763 # 1onwA.34.123 read from T0506.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)A41 (1onwA)W131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L42 (1onwA)M132 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :LHTSRTA 1onwA 124 :NEEGISA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17764 # 1bykA.34.54 read from T0506.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0506)R38 (1bykA)I119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1bykA)V122 because E (beta_S) conformation "forbidden" or filtered. T0506 34 :LHTS 1bykA 115 :KRRN T0506 39 :T 1bykA 120 :D T0506 42 :L 1bykA 123 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=17767 # 1w4rA.34.113 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 1w4rA 113 :ANA T0506 38 :RTAAL 1w4rA 117 :KTVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17769 # 1kwgA.34.60 read from T0506.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)A41 (1kwgA)V68 because E (beta_S) conformation "forbidden" or filtered. T0506 34 :LHTSRTA 1kwgA 61 :AAEGLKV T0506 42 :L 1kwgA 69 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17771 # 1w9hA.34.103 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)S37 (1w9hA)G107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :LHT 1w9hA 104 :IDT T0506 38 :RT 1w9hA 108 :VD T0506 41 :AL 1w9hA 111 :IM Number of specific fragments extracted= 3 number of extra gaps= 2 total=17774 # 1rx0A.34.127 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)T36 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rx0A)S135 because E (beta_S) conformation "forbidden" or filtered. T0506 34 :LH 1rx0A 128 :CT T0506 37 :SRTA 1rx0A 131 :EKFA T0506 42 :L 1rx0A 136 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=17777 1jftA expands to /projects/compbio/data/pdb/1jft.pdb.gz 1jftA:# 1jftA.34.110 read from T0506.t2k.many.frag # adding 1jftA to template set # found chain 1jftA in template set Warning: unaligning (T0506)S37 (1jftA)R115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :LHT 1jftA 112 :AQK T0506 38 :RT 1jftA 116 :VD T0506 41 :AL 1jftA 119 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=17780 # 1yc5A.34.177 read from T0506.t2k.many.frag # found chain 1yc5A in template set Warning: unaligning (T0506)A41 (1yc5A)I185 because E (beta_S) conformation "forbidden" or filtered. T0506 34 :LHTSRTA 1yc5A 178 :SSRASLM T0506 42 :L 1yc5A 186 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=17782 # 1wdpA.34.42 read from T0506.t2k.many.frag # found chain 1wdpA in template set Warning: unaligning (T0506)S37 (1wdpA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1wdpA)V50 because E (beta_S) conformation "forbidden" or filtered. T0506 34 :LHT 1wdpA 43 :RAA T0506 38 :RTA 1wdpA 47 :VDG T0506 42 :L 1wdpA 51 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=17785 # 1eyeA.34.76 read from T0506.t2k.many.frag # found chain 1eyeA in training set Warning: unaligning (T0506)S37 (1eyeA)G80 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 1eyeA 77 :AAQ T0506 38 :RTAAL 1eyeA 81 :ITVSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17787 2ahrA expands to /projects/compbio/data/pdb/2ahr.pdb.gz 2ahrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ahrA.34.57 read from T0506.t2k.many.frag # adding 2ahrA to template set # found chain 2ahrA in template set T0506 34 :LHTSRTAAL 2ahrA 55 :IDQVDLVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17788 # 1usgA.34.88 read from T0506.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0506)R38 (1usgA)G93 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1usgA)L95 because P (beta_P) conformation "forbidden" or filtered. T0506 34 :LHTS 1usgA 89 :YEDE T0506 39 :T 1usgA 94 :I T0506 41 :AL 1usgA 96 :MI Number of specific fragments extracted= 3 number of extra gaps= 2 total=17791 # 2ar0A.34.330 read from T0506.t2k.many.frag # found chain 2ar0A in template set T0506 34 :LHTSRTAAL 2ar0A 331 :MDKCHLHTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=17792 # 1cnv.34.72 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)S37 (1cnv)G76 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 1cnv 73 :QRM T0506 38 :RTAAL 1cnv 77 :VKVFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17794 # 1tfzA.34.110 read from T0506.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0506)R38 (1tfzA)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1tfzA)G117 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :LHTS 1tfzA 111 :FSSH T0506 39 :T 1tfzA 116 :L T0506 41 :AL 1tfzA 118 :VR Number of specific fragments extracted= 3 number of extra gaps= 2 total=17797 # 1xg4A.34.73 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 34 :LHTSRTAAL 1xg4A 75 :TDVCSLPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17798 # 1gci.34.140 read from T0506.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0506)S37 (1gci)G146 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 1gci 143 :TSR T0506 38 :RTAAL 1gci 147 :VLVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17800 # 1ga6A.34.157 read from T0506.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0506)S37 (1ga6A)G161 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 1ga6A 158 :AAQ T0506 38 :RTAAL 1ga6A 162 :QTFSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17802 12asA expands to /projects/compbio/data/pdb/12as.pdb.gz 12asA:# 12asA.34.189 read from T0506.t2k.many.frag # adding 12asA to template set # found chain 12asA in template set Warning: unaligning (T0506)T36 because of BadResidue code BAD_PEPTIDE in next template residue (12asA)L193 Warning: unaligning (T0506)S37 because of BadResidue code BAD_PEPTIDE at template residue (12asA)L193 Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (12asA)F197 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (12asA)F197 T0506 34 :LH 12asA 190 :AK T0506 38 :RT 12asA 194 :GA T0506 42 :L 12asA 198 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=17805 # 1xhnA.35.27 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)H35 (1xhnA)H28 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :TSRT 1xhnA 29 :VSDW T0506 41 :ALA 1xhnA 34 :ALA Number of specific fragments extracted= 2 number of extra gaps= 2 total=17807 # 1rttA.35.70 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 35 :HTSRTA 1rttA 71 :RAADAL T0506 42 :LA 1rttA 78 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17809 # 1yrbA.35.106 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 35 :HTSRTAALA 1yrbA 93 :KENDYVLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=17810 # 1tjyA.35.57 read from T0506.t2k.many.frag # found chain 1tjyA in training set T0506 35 :HTSRTAALA 1tjyA 82 :NQGYDAIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17811 # 1w9hA.35.104 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)S37 (1w9hA)G107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 35 :HT 1w9hA 105 :DT T0506 38 :RT 1w9hA 108 :VD T0506 41 :ALA 1w9hA 111 :IML Number of specific fragments extracted= 3 number of extra gaps= 2 total=17814 # 2axoA.35.68 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 35 :HT 2axoA 69 :QK T0506 38 :RTAALA 2axoA 72 :DVVGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17816 # 1uz5A.35.244 read from T0506.t2k.many.frag # found chain 1uz5A in template set Warning: unaligning (T0506)A43 (1uz5A)S253 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HTSRTAAL 1uz5A 245 :NVGDVVVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17817 # 1kgdA.35.93 read from T0506.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)A43 (1kgdA)D831 because N (gamma') conformation "forbidden" or filtered. T0506 35 :HTSRTAAL 1kgdA 823 :EQGLIAIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17818 # 1mw9X.35.100 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 35 :HTSRTAALA 1mw9X 101 :EKADHIYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17819 # 1jftA.35.111 read from T0506.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)A40 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. T0506 35 :HTSRT 1jftA 113 :QKRVD T0506 41 :ALA 1jftA 119 :LLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17821 # 1bykA.35.55 read from T0506.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0506)R38 (1bykA)I119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0506 35 :HTS 1bykA 116 :RRN T0506 39 :T 1bykA 120 :D T0506 41 :ALA 1bykA 122 :VVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=17824 # 1c93A.35.75 read from T0506.t2k.many.frag # found chain 1c93A in template set T0506 35 :HTSRTAALA 1c93A 81 :QQGIKVLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17825 # 1w4rA.35.114 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)R38 (1w4rA)K117 because P (beta_P) conformation "forbidden" or filtered. T0506 35 :HTS 1w4rA 114 :NAG T0506 39 :TAALA 1w4rA 118 :TVIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17827 # 1p1mA.35.268 read from T0506.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0506)S37 (1p1mA)G271 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1p1mA)T275 because Y (epsilon') conformation "forbidden" or filtered. T0506 35 :HT 1p1mA 269 :EH T0506 38 :RTA 1p1mA 272 :MKV T0506 42 :LA 1p1mA 276 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=17830 # 1kwgA.35.61 read from T0506.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)A41 (1kwgA)V68 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HTSRTA 1kwgA 62 :AEGLKV T0506 42 :LA 1kwgA 69 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=17832 1nlfA expands to /projects/compbio/data/pdb/1nlf.pdb.gz 1nlfA:# 1nlfA.35.131 read from T0506.t2k.many.frag # adding 1nlfA to template set # found chain 1nlfA in template set Warning: unaligning (T0506)A41 (1nlfA)V138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 T0506 35 :HTSRTA 1nlfA 132 :EGRRLM T0506 42 :L 1nlfA 139 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=17834 # 1rx0A.35.128 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)H35 (1rx0A)T129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T36 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1rx0A)C137 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRTAAL 1rx0A 131 :EKFASY Number of specific fragments extracted= 1 number of extra gaps= 2 total=17835 # 1onwA.35.124 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 35 :HTSRTAALA 1onwA 125 :EEGISAWML Number of specific fragments extracted= 1 number of extra gaps= 0 total=17836 # 1gci.35.141 read from T0506.t2k.many.frag # found chain 1gci in training set T0506 35 :HTSRTAALA 1gci 144 :SRGVLVVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=17837 # 1l6rA.35.35 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)A43 (1l6rA)L41 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HTSRTAAL 1l6rA 33 :KKGLTVSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17838 # 1usgA.35.89 read from T0506.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0506)R38 (1usgA)G93 because L (left) conformation "forbidden" or filtered. T0506 35 :HTS 1usgA 90 :EDE T0506 39 :TAALA 1usgA 94 :ILMIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17840 # 1ga6A.35.158 read from T0506.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0506)S37 (1ga6A)G161 because T (delta_L) conformation "forbidden" or filtered. T0506 35 :HT 1ga6A 159 :AQ T0506 38 :RTAALA 1ga6A 162 :QTFSVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17842 # 1cnv.35.73 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)S37 (1cnv)G76 because T (delta_L) conformation "forbidden" or filtered. T0506 35 :HT 1cnv 74 :RM T0506 38 :RTAALA 1cnv 77 :VKVFLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17844 # 1wdpA.35.43 read from T0506.t2k.many.frag # found chain 1wdpA in template set Warning: unaligning (T0506)S37 (1wdpA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1wdpA)G49 because Y (epsilon') conformation "forbidden" or filtered. T0506 35 :HT 1wdpA 44 :AA T0506 38 :RT 1wdpA 47 :VD T0506 41 :ALA 1wdpA 50 :VMV Number of specific fragments extracted= 3 number of extra gaps= 2 total=17847 # 1eyeA.35.77 read from T0506.t2k.many.frag # found chain 1eyeA in training set Warning: unaligning (T0506)A43 (1eyeA)D86 because N (gamma') conformation "forbidden" or filtered. T0506 35 :HTSRTAAL 1eyeA 78 :AQGITVSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=17848 1t71A expands to /projects/compbio/data/pdb/1t71.pdb.gz 1t71A:# 1t71A.35.172 read from T0506.t2k.many.frag # adding 1t71A to template set # found chain 1t71A in template set Warning: unaligning (T0506)A43 (1t71A)G181 because P (beta_P) conformation "forbidden" or filtered. T0506 35 :HTSRTAAL 1t71A 173 :DGYVTTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=17849 # 1m7gA.35.95 read from T0506.t2k.many.frag # found chain 1m7gA in training set Warning: unaligning (T0506)S37 (1m7gA)N98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1m7gA)S104 because D (zeta) conformation "forbidden" or filtered. T0506 35 :HT 1m7gA 96 :DS T0506 38 :RTAAL 1m7gA 99 :SIAIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=17851 1vliA expands to /projects/compbio/data/pdb/1vli.pdb.gz 1vliA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vliA.35.155 read from T0506.t2k.many.frag # adding 1vliA to template set # found chain 1vliA in template set Warning: unaligning (T0506)S37 (1vliA)N146 because L (left) conformation "forbidden" or filtered. T0506 35 :HT 1vliA 144 :RL T0506 38 :RTAALA 1vliA 147 :RPMIFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17853 # 2ahrA.35.58 read from T0506.t2k.many.frag # found chain 2ahrA in template set T0506 35 :HTSRTAALA 2ahrA 56 :DQVDLVILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17854 2a3nA expands to /projects/compbio/data/pdb/2a3n.pdb.gz 2a3nA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 59, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 63, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 297, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 301, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 415, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 417, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 474, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 476, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 478, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 548, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 550, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 657, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 667, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 673, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 778, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 782, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 784, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 859, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 865, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 867, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 871, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1016, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1020, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1022, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1024, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1028, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1347, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1351, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1353, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1376, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1380, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1382, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1411, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1412, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1416, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1417, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1419, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1420, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1449, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1453, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1455, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1457, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1459, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1536, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1540, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1544, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1546, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1548, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1656, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1660, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1662, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1664, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1666, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1669, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1670, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1674, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1675, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1677, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1678, because occupancy 0.330 <= existing 0.340 in 2a3nA Skipped atom 1681, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1685, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1687, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1689, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1691, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1742, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1744, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1746, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1773, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1775, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1777, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1779, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1846, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1848, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1850, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1852, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1854, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 1856, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2099, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2103, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2105, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2107, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2110, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2114, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2116, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2118, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2120, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2277, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2281, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2283, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2285, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2287, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2289, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2291, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2293, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2312, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2316, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2318, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2406, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2410, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2412, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2414, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2416, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2418, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2479, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2483, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2485, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2487, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2489, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2545, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2549, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2551, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2553, because occupancy 0.500 <= existing 0.500 in 2a3nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2555, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2570, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2574, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2576, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2839, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2843, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2845, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2847, because occupancy 0.500 <= existing 0.500 in 2a3nA Skipped atom 2849, because occupancy 0.500 <= existing 0.500 in 2a3nA # 2a3nA.35.126 read from T0506.t2k.many.frag # adding 2a3nA to template set # found chain 2a3nA in template set Warning: unaligning (T0506)A41 (2a3nA)V121 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HTSRTA 2a3nA 115 :AQGIRV T0506 42 :LA 2a3nA 122 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17856 # 1xhnA.36.28 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 36 :TSRTAALAT 1xhnA 29 :VSDWGALAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17857 # 1tjyA.36.58 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)S37 (1tjyA)G84 because T (delta_L) conformation "forbidden" or filtered. T0506 36 :T 1tjyA 83 :Q T0506 38 :RTAALAT 1tjyA 85 :YDAIIVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17859 # 1jftA.36.112 read from T0506.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)S37 (1jftA)R115 because L (left) conformation "forbidden" or filtered. T0506 36 :T 1jftA 114 :K T0506 38 :RTAALAT 1jftA 116 :VDGLLVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=17861 # 1c93A.36.76 read from T0506.t2k.many.frag # found chain 1c93A in template set T0506 36 :TSRTAALAT 1c93A 82 :QGIKVLLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=17862 # 1rttA.36.71 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1rttA)A79 because D (zeta) conformation "forbidden" or filtered. T0506 36 :TSRTA 1rttA 72 :AADAL T0506 42 :L 1rttA 78 :F T0506 44 :T 1rttA 80 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=17865 # 1yrbA.36.107 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 36 :TSRTAALAT 1yrbA 94 :ENDYVLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17866 # 2axoA.36.69 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)R38 (2axoA)D72 because G (3-10) conformation "forbidden" or filtered. T0506 36 :TS 2axoA 70 :KG T0506 39 :TAALAT 2axoA 73 :VVGLSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17868 # 1bykA.36.56 read from T0506.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0506)S37 (1bykA)N118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :T 1bykA 117 :R T0506 38 :RT 1bykA 119 :ID T0506 41 :ALAT 1bykA 122 :VVLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=17871 # 1w9hA.36.105 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :TSRT 1w9hA 106 :TGVD T0506 41 :ALAT 1w9hA 111 :IMLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=17873 # 1usgA.36.90 read from T0506.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0506)S37 (1usgA)E92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1usgA)G93 because L (left) conformation "forbidden" or filtered. T0506 36 :T 1usgA 91 :D T0506 39 :TAALAT 1usgA 94 :ILMISP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17875 # 1p1mA.36.269 read from T0506.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0506)S37 (1p1mA)G271 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1p1mA)V274 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1p1mA)T275 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :T 1p1mA 270 :H T0506 38 :RT 1p1mA 272 :MK T0506 42 :LAT 1p1mA 276 :LGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=17878 # 1mw9X.36.101 read from T0506.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0506)A40 (1mw9X)I106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1mw9X)Y107 because E (beta_S) conformation "forbidden" or filtered. T0506 36 :TSRT 1mw9X 102 :KADH T0506 42 :LAT 1mw9X 108 :LAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17880 # 1kwgA.36.62 read from T0506.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)S37 (1kwgA)G64 because T (delta_L) conformation "forbidden" or filtered. T0506 36 :T 1kwgA 63 :E T0506 38 :RTAALAT 1kwgA 65 :LKVVLGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17882 # 1ga6A.36.159 read from T0506.t2k.many.frag # found chain 1ga6A in training set T0506 36 :TSRTAALAT 1ga6A 160 :QGQTFSVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17883 # 1q74A.36.126 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)A43 (1q74A)V134 because E (beta_S) conformation "forbidden" or filtered. T0506 36 :TSRTAAL 1q74A 127 :ELRPHVV T0506 44 :T 1q74A 135 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=17885 # 1w4rA.36.115 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1w4rA)K117 because P (beta_P) conformation "forbidden" or filtered. T0506 36 :T 1w4rA 115 :A T0506 39 :TAALAT 1w4rA 118 :TVIVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=17887 # 1t71A.36.173 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A40 (1t71A)T178 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1t71A)I179 because D (zeta) conformation "forbidden" or filtered. T0506 36 :TSRT 1t71A 174 :GYVT T0506 42 :LAT 1t71A 180 :FGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17889 # 1rx0A.36.129 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)T36 (1rx0A)M130 because L (left) conformation "forbidden" or filtered. T0506 37 :SRTAALAT 1rx0A 131 :EKFASYCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17890 # 1uz5A.36.245 read from T0506.t2k.many.frag # found chain 1uz5A in template set Warning: unaligning (T0506)T44 (1uz5A)G254 because T (delta_L) conformation "forbidden" or filtered. T0506 36 :TSRTAALA 1uz5A 246 :VGDVVVIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=17891 # 1nlfA.36.132 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)T36 (1nlfA)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 T0506 37 :SRTAAL 1nlfA 134 :RRLMVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=17892 # 1cnv.36.74 read from T0506.t2k.many.frag # found chain 1cnv in training set T0506 36 :TSRTAALAT 1cnv 75 :MGVKVFLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17893 2akaB expands to /projects/compbio/data/pdb/2aka.pdb.gz 2akaB:Skipped atom 6896, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 6898, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 6997, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 6999, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7001, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7003, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7005, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7007, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7009, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7460, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7462, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7464, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7466, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7468, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7470, because occupancy 0.500 <= existing 0.500 in 2akaB Skipped atom 7472, because occupancy 0.500 <= existing 0.500 in 2akaB # 2akaB.36.160 read from T0506.t2k.many.frag # adding 2akaB to template set # found chain 2akaB in template set Warning: unaligning (T0506)A40 (2akaB)L170 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (2akaB)A173 because P (beta_P) conformation "forbidden" or filtered. T0506 36 :TSRT 2akaB 166 :KENC T0506 41 :AL 2akaB 171 :IL T0506 44 :T 2akaB 174 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=17896 # 1l6rA.36.36 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)S37 (1l6rA)G35 because T (delta_L) conformation "forbidden" or filtered. T0506 36 :T 1l6rA 34 :K T0506 38 :RTAALAT 1l6rA 36 :LTVSLLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17898 # 1uteA.36.211 read from T0506.t2k.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)S37 (1uteA)K213 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1uteA)A216 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1uteA)C219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T44 (1uteA)G220 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :T 1uteA 212 :H T0506 38 :RT 1uteA 214 :VT T0506 41 :AL 1uteA 217 :YL Number of specific fragments extracted= 3 number of extra gaps= 3 total=17901 # 1gci.36.142 read from T0506.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0506)S37 (1gci)G146 because T (delta_L) conformation "forbidden" or filtered. T0506 36 :T 1gci 145 :R T0506 38 :RTAALAT 1gci 147 :VLVVAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17903 # 1k7cA.36.123 read from T0506.t2k.many.frag # found chain 1k7cA in training set T0506 36 :TSRTAALAT 1k7cA 124 :KGAKVILSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17904 1o0sA expands to /projects/compbio/data/pdb/1o0s.pdb.gz 1o0sA:# 1o0sA.36.395 read from T0506.t2k.many.frag # adding 1o0sA to template set # found chain 1o0sA in template set T0506 36 :TSRTAALAT 1o0sA 396 :AARPGALIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17905 # 1kgdA.36.94 read from T0506.t2k.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)A40 (1kgdA)A828 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1kgdA)D831 because N (gamma') conformation "forbidden" or filtered. T0506 36 :TSRT 1kgdA 824 :QGLI T0506 41 :AL 1kgdA 829 :IL T0506 44 :T 1kgdA 832 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=17908 # 1qlwA.36.195 read from T0506.t2k.many.frag # found chain 1qlwA in training set Warning: unaligning (T0506)T39 (1qlwA)G199 because S (epsilon) conformation "forbidden" or filtered. T0506 36 :TSR 1qlwA 196 :KLD T0506 40 :AALAT 1qlwA 200 :TVLLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=17910 # 1onwA.36.125 read from T0506.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)S37 (1onwA)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1onwA)W131 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L42 (1onwA)M132 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :T 1onwA 126 :E T0506 38 :RTA 1onwA 128 :ISA T0506 43 :AT 1onwA 133 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=17913 # 1xhnA.37.29 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 37 :SRT 1xhnA 30 :SDW T0506 41 :ALATL 1xhnA 34 :ALATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=17915 # 1tjyA.37.59 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)S37 (1tjyA)G84 because T (delta_L) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1tjyA 85 :YDAIIVSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17916 # 1c93A.37.77 read from T0506.t2k.many.frag # found chain 1c93A in template set T0506 37 :SRTAALATL 1c93A 83 :GIKVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17917 # 1rttA.37.72 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A40 (1rttA)L76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRT 1rttA 73 :ADA T0506 42 :LATL 1rttA 78 :FATP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17919 # 1jftA.37.113 read from T0506.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)S37 (1jftA)R115 because L (left) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1jftA 116 :VDGLLVMC Number of specific fragments extracted= 1 number of extra gaps= 1 total=17920 # 1p1mA.37.270 read from T0506.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0506)S37 (1p1mA)G271 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1p1mA)T275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1p1mA)D279 because S (epsilon) conformation "forbidden" or filtered. T0506 38 :RTA 1p1mA 272 :MKV T0506 42 :LAT 1p1mA 276 :LGT Number of specific fragments extracted= 2 number of extra gaps= 3 total=17922 # 1mw9X.37.102 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 37 :SRTAALATL 1mw9X 103 :ADHIYLATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17923 # 1w9hA.37.106 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 37 :SRT 1w9hA 107 :GVD T0506 41 :ALATL 1w9hA 111 :IMLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=17925 # 1q74A.37.127 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)R38 (1q74A)R129 because L (left) conformation "forbidden" or filtered. T0506 37 :S 1q74A 128 :L T0506 39 :TAALATL 1q74A 130 :PHVVVTY Number of specific fragments extracted= 2 number of extra gaps= 1 total=17927 # 1w4rA.37.116 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1w4rA 117 :KTVIVAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17928 # 1ga6A.37.160 read from T0506.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0506)S37 (1ga6A)G161 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1ga6A)Q162 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATL 1ga6A 163 :TFSVSSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17929 # 1t71A.37.174 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A43 (1t71A)G181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1t71A)H183 because T (delta_L) conformation "forbidden" or filtered. T0506 37 :SRTAAL 1t71A 175 :YVTTIF T0506 44 :T 1t71A 182 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=17931 # 1kwgA.37.63 read from T0506.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)S37 (1kwgA)G64 because T (delta_L) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1kwgA 65 :LKVVLGTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=17932 # 1uteA.37.212 read from T0506.t2k.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)S37 (1uteA)K213 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1uteA)C219 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RTAAL 1uteA 214 :VTAYL T0506 44 :TL 1uteA 220 :GH Number of specific fragments extracted= 2 number of extra gaps= 2 total=17934 # 1l6rA.37.37 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)S37 (1l6rA)G35 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1l6rA)L36 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATL 1l6rA 37 :TVSLLSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17935 # 1usgA.37.91 read from T0506.t2k.many.frag # found chain 1usgA in training set T0506 37 :SRTAALATL 1usgA 92 :EGILMISPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17936 # 1yrbA.37.108 read from T0506.t2k.many.frag # found chain 1yrbA in template set Warning: unaligning (T0506)A40 (1yrbA)V98 because E (beta_S) conformation "forbidden" or filtered. T0506 37 :SRT 1yrbA 95 :NDY T0506 41 :ALATL 1yrbA 99 :LIDTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17938 # 1rx0A.37.130 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)A43 (1rx0A)C137 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRTAAL 1rx0A 131 :EKFASY T0506 44 :TL 1rx0A 138 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17940 1kufA expands to /projects/compbio/data/pdb/1kuf.pdb.gz 1kufA:# 1kufA.37.93 read from T0506.t2k.many.frag # adding 1kufA to template set # found chain 1kufA in template set Warning: unaligning (T0506)S37 (1kufA)H94 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RTAALATL 1kufA 95 :DHAQLLTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17941 # 1bykA.37.57 read from T0506.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0506)S37 (1bykA)N118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1bykA)V122 because E (beta_S) conformation "forbidden" or filtered. T0506 38 :RT 1bykA 119 :ID T0506 42 :LATL 1bykA 123 :VLFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=17943 # 1gci.37.143 read from T0506.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0506)S37 (1gci)G146 because T (delta_L) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1gci 147 :VLVVAASG Number of specific fragments extracted= 1 number of extra gaps= 1 total=17944 1zaiA expands to /projects/compbio/data/pdb/1zai.pdb.gz 1zaiA:# 1zaiA.37.24 read from T0506.t2k.many.frag # adding 1zaiA to template set # found chain 1zaiA in template set Warning: unaligning (T0506)R38 (1zaiA)G26 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1zaiA)G28 because Y (epsilon') conformation "forbidden" or filtered. T0506 37 :S 1zaiA 25 :P T0506 39 :T 1zaiA 27 :K T0506 41 :ALATL 1zaiA 29 :ILAAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17947 # 2axoA.37.70 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (2axoA)S77 because E (beta_S) conformation "forbidden" or filtered. T0506 38 :RTAAL 2axoA 72 :DVVGL T0506 44 :TL 2axoA 78 :YH Number of specific fragments extracted= 2 number of extra gaps= 2 total=17949 # 1k7cA.37.124 read from T0506.t2k.many.frag # found chain 1k7cA in training set Warning: unaligning (T0506)S37 (1k7cA)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1k7cA)A126 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATL 1k7cA 127 :KVILSSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=17950 # 1cnv.37.75 read from T0506.t2k.many.frag # found chain 1cnv in training set T0506 37 :SRTAALATL 1cnv 76 :GVKVFLALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17951 # 2akaB.37.161 read from T0506.t2k.many.frag # found chain 2akaB in template set T0506 37 :SRTAALATL 2akaB 167 :ENCLILAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17952 # 1o0sA.37.396 read from T0506.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0506)S37 (1o0sA)A397 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1o0sA)G400 because G (3-10) conformation "forbidden" or filtered. T0506 38 :RT 1o0sA 398 :RP T0506 41 :ALATL 1o0sA 401 :ALIGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=17954 # 1uz5A.37.246 read from T0506.t2k.many.frag # found chain 1uz5A in template set T0506 37 :SRTAALATL 1uz5A 247 :GDVVVISGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17955 # 1nlfA.37.133 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 T0506 37 :SRTAAL 1nlfA 134 :RRLMVL T0506 45 :L 1nlfA 142 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=17957 # 2f5tX.37.21 read from T0506.t2k.many.frag # found chain 2f5tX in template set T0506 37 :SRTAALATL 2f5tX 131 :AKNEVIVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17958 # 1xhnA.38.30 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 38 :RTAALATLD 1xhnA 31 :DWGALATIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17959 # 1tjyA.38.60 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)R38 (1tjyA)Y85 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1tjyA 86 :DAIIVSAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=17960 # 1rttA.38.73 read from T0506.t2k.many.frag # found chain 1rttA in training set T0506 38 :RTAALATLD 1rttA 74 :DALLFATPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=17961 # 1c93A.38.78 read from T0506.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0506)D46 (1c93A)G92 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1c93A 84 :IKVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=17962 # 1p1mA.38.271 read from T0506.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0506)A41 (1p1mA)T275 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1p1mA)D279 because S (epsilon) conformation "forbidden" or filtered. T0506 38 :RTA 1p1mA 272 :MKV T0506 42 :LAT 1p1mA 276 :LGT T0506 46 :D 1p1mA 280 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=17965 # 1jftA.38.114 read from T0506.t2k.many.frag # found chain 1jftA in template set T0506 38 :RTAALATLD 1jftA 116 :VDGLLVMCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17966 # 1ga6A.38.161 read from T0506.t2k.many.frag # found chain 1ga6A in training set T0506 38 :RTAALATLD 1ga6A 162 :QTFSVSSGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=17967 # 1mw9X.38.103 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 38 :RTAALATLD 1mw9X 104 :DHIYLATDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=17968 # 1t71A.38.175 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A40 (1t71A)T178 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1t71A)H183 because T (delta_L) conformation "forbidden" or filtered. T0506 38 :RT 1t71A 176 :VT T0506 41 :ALAT 1t71A 179 :IFGT T0506 46 :D 1t71A 184 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=17971 # 1w4rA.38.117 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)A40 (1w4rA)V119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1w4rA)A122 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RT 1w4rA 117 :KT T0506 41 :AL 1w4rA 120 :IV T0506 44 :TLD 1w4rA 123 :ALD Number of specific fragments extracted= 3 number of extra gaps= 2 total=17974 # 1w9hA.38.107 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)A43 (1w9hA)L113 because E (beta_S) conformation "forbidden" or filtered. T0506 38 :RTAAL 1w9hA 108 :VDGIM T0506 44 :TLD 1w9hA 114 :VLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=17976 # 1uteA.38.213 read from T0506.t2k.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)A43 (1uteA)C219 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RTAAL 1uteA 214 :VTAYL T0506 44 :TLD 1uteA 220 :GHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=17978 # 1kufA.38.94 read from T0506.t2k.many.frag # found chain 1kufA in template set Warning: unaligning (T0506)A43 (1kufA)L100 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RTAAL 1kufA 95 :DHAQL T0506 44 :TLD 1kufA 101 :TDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17980 # 1q74A.38.128 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)R38 (1q74A)R129 because L (left) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1q74A 130 :PHVVVTYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=17981 # 1l6rA.38.38 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 38 :RTAALATLD 1l6rA 36 :LTVSLLSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=17982 # 1kwgA.38.64 read from T0506.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)A43 (1kwgA)G70 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RTAAL 1kwgA 65 :LKVVL T0506 44 :TLD 1kwgA 71 :TPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=17984 # 1yrbA.38.109 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 38 :RTAALATLD 1yrbA 96 :DYVLIDTPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=17985 # 1gci.38.144 read from T0506.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0506)A41 (1gci)V150 because E (beta_S) conformation "forbidden" or filtered. T0506 38 :RTA 1gci 147 :VLV T0506 42 :LATLD 1gci 151 :AASGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=17987 # 1zaiA.38.25 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)R38 (1zaiA)G26 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1zaiA)G28 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :T 1zaiA 27 :K T0506 41 :ALATLD 1zaiA 29 :ILAADE Number of specific fragments extracted= 2 number of extra gaps= 2 total=17989 # 2akaB.38.162 read from T0506.t2k.many.frag # found chain 2akaB in template set T0506 38 :RTAALATLD 2akaB 168 :NCLILAVSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=17990 # 1usgA.38.92 read from T0506.t2k.many.frag # found chain 1usgA in training set Warning: unaligning (T0506)R38 (1usgA)G93 because L (left) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1usgA 94 :ILMISPGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17991 # 1k7cA.38.125 read from T0506.t2k.many.frag # found chain 1k7cA in training set T0506 38 :RTAALATLD 1k7cA 126 :AKVILSSQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=17992 # 1cnv.38.76 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)R38 (1cnv)V77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1cnv)A82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1cnv)G84 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1cnv)G85 because S (epsilon) conformation "forbidden" or filtered. T0506 39 :TAAL 1cnv 78 :KVFL T0506 44 :T 1cnv 83 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=17994 1o12A expands to /projects/compbio/data/pdb/1o12.pdb.gz 1o12A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1o12A.38.86 read from T0506.t2k.many.frag # adding 1o12A to template set # found chain 1o12A in template set Warning: unaligning (T0506)T39 (1o12A)T76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1o12A)F78 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :R 1o12A 75 :V T0506 40 :A 1o12A 77 :T T0506 42 :LATLD 1o12A 79 :LATTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=17997 # 1o0sA.38.397 read from T0506.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0506)D46 (1o0sA)S406 because E (beta_S) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1o0sA 398 :RPGALIGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=17998 2f62A expands to /projects/compbio/data/pdb/2f62.pdb.gz 2f62A:Skipped atom 43, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 47, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 51, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 2f62A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 263, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 265, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 2f62A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 390, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 394, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 396, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 398, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 400, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 490, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 498, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 500, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 502, because occupancy 0.500 <= existing 0.500 in 2f62A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 2f62A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 867, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 871, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 2f62A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1199, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1203, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1205, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1207, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1209, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1211, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1214, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1218, because occupancy 0.500 <= existing 0.500 in 2f62A Skipped atom 1220, because occupancy 0.500 <= existing 0.500 in 2f62A # 2f62A.38.67 read from T0506.t2k.many.frag # adding 2f62A to template set # found chain 2f62A in template set T0506 38 :RTAALATLD 2f62A 68 :CDAVIADLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=17999 # 1nlfA.38.134 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 T0506 38 :RTAAL 1nlfA 135 :RLMVL T0506 45 :LD 1nlfA 142 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18001 # 1bykA.38.58 read from T0506.t2k.many.frag # found chain 1bykA in template set Warning: unaligning (T0506)R38 (1bykA)I119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1bykA)F127 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :T 1bykA 120 :D T0506 41 :ALATL 1bykA 122 :VVLFG Number of specific fragments extracted= 2 number of extra gaps= 3 total=18003 2f6kA expands to /projects/compbio/data/pdb/2f6k.pdb.gz 2f6kA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f6kA.38.89 read from T0506.t2k.many.frag # adding 2f6kA to template set # found chain 2f6kA in template set Warning: unaligning (T0506)A40 (2f6kA)G92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (2f6kA)P98 because N (gamma') conformation "forbidden" or filtered. T0506 38 :RT 2f6kA 90 :QL T0506 41 :ALATL 2f6kA 93 :YLASL Number of specific fragments extracted= 2 number of extra gaps= 2 total=18005 # 1rx0A.38.131 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)A41 (1rx0A)S135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1rx0A)C137 because D (zeta) conformation "forbidden" or filtered. T0506 38 :RTA 1rx0A 132 :KFA T0506 42 :L 1rx0A 136 :Y T0506 44 :TLD 1rx0A 138 :LTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=18008 # 1rttA.39.74 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)T39 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1rttA)A79 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1rttA)E82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1rttA)Y83 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :A 1rttA 76 :L T0506 42 :L 1rttA 78 :F T0506 44 :TL 1rttA 80 :TP Number of specific fragments extracted= 3 number of extra gaps= 4 total=18011 # 1c93A.39.79 read from T0506.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0506)D46 (1c93A)G92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1c93A)N93 because G (3-10) conformation "forbidden" or filtered. T0506 39 :TAALATL 1c93A 85 :KVLLSVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18012 # 1tjyA.39.61 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)P47 (1tjyA)S94 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1tjyA 86 :DAIIVSAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18013 # 1xhnA.39.31 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P47 (1xhnA)T40 because G (3-10) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1xhnA 32 :WGALATIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=18014 # 1p1mA.39.272 read from T0506.t2k.many.frag # found chain 1p1mA in training set T0506 39 :TAALATLDP 1p1mA 273 :KVTLGTDGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18015 # 1mw9X.39.104 read from T0506.t2k.many.frag # found chain 1mw9X in training set Warning: unaligning (T0506)A41 (1mw9X)Y107 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TA 1mw9X 105 :HI T0506 42 :LATLDP 1mw9X 108 :LATDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18017 # 1kufA.39.95 read from T0506.t2k.many.frag # found chain 1kufA in template set Warning: unaligning (T0506)D46 (1kufA)T103 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATL 1kufA 96 :HAQLLTD T0506 47 :P 1kufA 104 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=18019 # 1w4rA.39.118 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)P47 (1w4rA)G126 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1w4rA 118 :TVIVAALD Number of specific fragments extracted= 1 number of extra gaps= 1 total=18020 # 1yrbA.39.110 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 39 :TAALATLDP 1yrbA 97 :YVLIDTPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18021 # 1q74A.39.129 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 39 :TAALATLDP 1q74A 130 :PHVVVTYDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18022 # 1ga6A.39.162 read from T0506.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0506)A40 (1ga6A)F164 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1ga6A)E171 because G (3-10) conformation "forbidden" or filtered. T0506 39 :T 1ga6A 163 :T T0506 41 :ALATLD 1ga6A 165 :SVSSGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=18024 # 1t71A.39.176 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A43 (1t71A)G181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1t71A)H183 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1t71A)H185 because L (left) conformation "forbidden" or filtered. T0506 39 :TAAL 1t71A 177 :TTIF T0506 44 :T 1t71A 182 :T T0506 46 :D 1t71A 184 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=18027 # 1jftA.39.115 read from T0506.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)A40 (1jftA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1jftA)E125 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :T 1jftA 117 :D T0506 41 :ALATL 1jftA 119 :LLVMC Number of specific fragments extracted= 2 number of extra gaps= 2 total=18029 # 1gci.39.145 read from T0506.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0506)L45 (1gci)G154 because S (epsilon) conformation "forbidden" or filtered. T0506 39 :TAALAT 1gci 148 :LVVAAS T0506 46 :DP 1gci 155 :NS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18031 # 1zaiA.39.26 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)A40 (1zaiA)G28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1zaiA)E34 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :T 1zaiA 27 :K T0506 41 :ALATL 1zaiA 29 :ILAAD T0506 47 :P 1zaiA 35 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=18034 # 1nlfA.39.135 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 Warning: unaligning (T0506)P47 (1nlfA)R144 because G (3-10) conformation "forbidden" or filtered. T0506 39 :TAAL 1nlfA 136 :LMVL T0506 45 :LD 1nlfA 142 :LR Number of specific fragments extracted= 2 number of extra gaps= 2 total=18036 # 1uteA.39.214 read from T0506.t2k.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)A43 (1uteA)C219 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T44 (1uteA)G220 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :TAAL 1uteA 215 :TAYL T0506 45 :LDP 1uteA 221 :HDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18038 # 1l6rA.39.39 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 39 :TAALATLDP 1l6rA 37 :TVSLLSGNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18039 # 1o0sA.39.398 read from T0506.t2k.many.frag # found chain 1o0sA in template set T0506 39 :TAALATLDP 1o0sA 399 :PGALIGAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=18040 # 1kwgA.39.65 read from T0506.t2k.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)A43 (1kwgA)G70 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAAL 1kwgA 66 :KVVL T0506 44 :TLDP 1kwgA 71 :TPTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18042 # 1k7cA.39.126 read from T0506.t2k.many.frag # found chain 1k7cA in training set Warning: unaligning (T0506)P47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1k7cA)N136 T0506 39 :TAALATLD 1k7cA 127 :KVILSSQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18043 # 1uz5A.39.248 read from T0506.t2k.many.frag # found chain 1uz5A in template set Warning: unaligning (T0506)D46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uz5A)D262 T0506 39 :TAALATL 1uz5A 249 :VVVISGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18044 # 1w9hA.39.108 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w9hA)Y118 T0506 39 :T 1w9hA 109 :D T0506 41 :ALATLD 1w9hA 111 :IMLVLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=18046 # 2f62A.39.68 read from T0506.t2k.many.frag # found chain 2f62A in template set Warning: unaligning (T0506)A41 (2f62A)V71 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TA 2f62A 69 :DA T0506 42 :LATLDP 2f62A 72 :IADLSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18048 # 1twdA.39.23 read from T0506.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0506)L45 (1twdA)A30 because L (left) conformation "forbidden" or filtered. T0506 39 :TAALAT 1twdA 24 :RVELCA T0506 46 :DP 1twdA 31 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18050 # 1cnv.39.77 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)L45 (1cnv)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 39 :TAALAT 1cnv 78 :KVFLAL T0506 46 :DP 1cnv 85 :GP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18052 # 2akaB.39.163 read from T0506.t2k.many.frag # found chain 2akaB in template set T0506 39 :TAALATLDP 2akaB 169 :CLILAVSPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18053 # 2axoA.39.72 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)P47 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0506 39 :TAALATLD 2axoA 73 :VVGLSYHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18054 # 8abp.39.58 read from T0506.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A41 (8abp)F61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (8abp)D67 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TA 8abp 59 :KG T0506 42 :LATLD 8abp 62 :VICTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=18056 # 1o12A.39.87 read from T0506.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0506)A41 (1o12A)F78 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :TA 1o12A 76 :TT T0506 42 :LATLDP 1o12A 79 :LATTVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18058 # 1q74A.40.130 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)A43 (1q74A)V134 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :AAL 1q74A 131 :HVV T0506 44 :TLDPV 1q74A 135 :TYDPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18060 # 1c93A.40.80 read from T0506.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0506)D46 (1c93A)G92 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1c93A)N93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1c93A)H94 because L (left) conformation "forbidden" or filtered. T0506 40 :AALATL 1c93A 86 :VLLSVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18061 # 1rttA.40.75 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1rttA)Y83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1rttA)N84 because L (left) conformation "forbidden" or filtered. T0506 40 :A 1rttA 76 :L T0506 42 :LATLD 1rttA 78 :FATPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=18063 # 1mw9X.40.105 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 40 :AALATLDPV 1mw9X 106 :IYLATDLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18064 # 1w4rA.40.119 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)P47 (1w4rA)G126 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :AALATLD 1w4rA 119 :VIVAALD T0506 48 :V 1w4rA 127 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=18066 # 1tjyA.40.62 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)P47 (1tjyA)S94 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :AALATLD 1tjyA 87 :AIIVSAV T0506 48 :V 1tjyA 95 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18068 # 1zaiA.40.27 read from T0506.t2k.many.frag # found chain 1zaiA in template set T0506 40 :AALATLDPV 1zaiA 28 :GILAADEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=18069 # 1o0sA.40.399 read from T0506.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0506)D46 (1o0sA)S406 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :AALATL 1o0sA 400 :GALIGA T0506 47 :PV 1o0sA 407 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18071 # 2f62A.40.69 read from T0506.t2k.many.frag # found chain 2f62A in template set T0506 40 :AALATLDPV 2f62A 70 :AVIADLSPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18072 # 1kufA.40.96 read from T0506.t2k.many.frag # found chain 1kufA in template set T0506 40 :AALATLDPV 1kufA 97 :AQLLTDTNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18073 # 1p1mA.40.273 read from T0506.t2k.many.frag # found chain 1p1mA in training set Warning: unaligning (T0506)L45 (1p1mA)D279 because S (epsilon) conformation "forbidden" or filtered. T0506 40 :AALAT 1p1mA 274 :VTLGT T0506 46 :DPV 1p1mA 280 :GAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18075 # 1yrbA.40.111 read from T0506.t2k.many.frag # found chain 1yrbA in template set T0506 40 :AALATLDPV 1yrbA 98 :VLIDTPGQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18076 # 1t71A.40.177 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A40 (1t71A)T178 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1t71A)H183 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1t71A)H185 because L (left) conformation "forbidden" or filtered. T0506 41 :ALAT 1t71A 179 :IFGT T0506 46 :D 1t71A 184 :T T0506 48 :V 1t71A 186 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=18079 # 1w9hA.40.109 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1w9hA)P116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w9hA)Y118 Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w9hA)Y118 T0506 41 :ALATL 1w9hA 111 :IMLVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=18080 # 1gci.40.146 read from T0506.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0506)L45 (1gci)G154 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1gci)G157 because T (delta_L) conformation "forbidden" or filtered. T0506 40 :AALAT 1gci 149 :VVAAS T0506 46 :DP 1gci 155 :NS Number of specific fragments extracted= 2 number of extra gaps= 2 total=18082 # 2f5tX.40.24 read from T0506.t2k.many.frag # found chain 2f5tX in template set Warning: unaligning (T0506)D46 (2f5tX)P140 because P (beta_P) conformation "forbidden" or filtered. T0506 40 :AALATL 2f5tX 134 :EVIVVT T0506 47 :PV 2f5tX 141 :SE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18084 # 1jftA.40.116 read from T0506.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)P47 (1jftA)E125 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :AALATLD 1jftA 118 :GLLVMCS T0506 48 :V 1jftA 126 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=18086 # 1cnv.40.78 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)L45 (1cnv)G84 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1cnv)G85 because S (epsilon) conformation "forbidden" or filtered. T0506 40 :AALAT 1cnv 79 :VFLAL T0506 47 :PV 1cnv 86 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18088 # 1xhnA.40.32 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P47 (1xhnA)T40 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLD 1xhnA 33 :GALATIS T0506 48 :V 1xhnA 41 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=18090 # 8abp.40.59 read from T0506.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A40 (8abp)G60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (8abp)F61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (8abp)D67 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATLD 8abp 62 :VICTP T0506 48 :V 8abp 68 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=18092 # 2axoA.40.73 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)P47 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLD 2axoA 74 :VGLSYHV T0506 48 :V 2axoA 82 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=18094 # 1uteA.40.215 read from T0506.t2k.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)L45 (1uteA)H221 because T (delta_L) conformation "forbidden" or filtered. T0506 40 :AALAT 1uteA 216 :AYLCG T0506 46 :DPV 1uteA 222 :DHN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18096 # 1ga6A.40.163 read from T0506.t2k.many.frag # found chain 1ga6A in training set Warning: unaligning (T0506)P47 (1ga6A)E171 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLD 1ga6A 164 :FSVSSGD T0506 48 :V 1ga6A 172 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18098 # 1rx0A.40.133 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)A43 (1rx0A)C137 because D (zeta) conformation "forbidden" or filtered. T0506 40 :AAL 1rx0A 134 :ASY T0506 44 :TLDPV 1rx0A 138 :LTEPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18100 1pii expands to /projects/compbio/data/pdb/1pii.pdb.gz 1pii:Warning: there is no chain 1pii will retry with 1piiA Skipped atom 428, because occupancy 0.540 <= existing 0.540 in 1pii Skipped atom 436, because occupancy 0.530 <= existing 0.700 in 1pii Skipped atom 438, because occupancy 0.390 <= existing 0.640 in 1pii Skipped atom 1193, because occupancy 0.710 <= existing 0.710 in 1pii Skipped atom 1195, because occupancy 0.650 <= existing 0.670 in 1pii Skipped atom 1197, because occupancy 0.680 <= existing 0.680 in 1pii Skipped atom 1199, because occupancy 0.820 <= existing 0.860 in 1pii Skipped atom 1201, because occupancy 0.650 <= existing 0.750 in 1pii Skipped atom 1203, because occupancy 0.620 <= existing 0.830 in 1pii Skipped atom 1205, because occupancy 0.750 <= existing 0.800 in 1pii Skipped atom 1207, because occupancy 0.540 <= existing 0.630 in 1pii Skipped atom 1570, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1572, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1574, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1576, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1582, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1584, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1586, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1588, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1590, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 2537, because occupancy 0.510 <= existing 0.520 in 1pii Skipped atom 2539, because occupancy 0.450 <= existing 0.450 in 1pii Skipped atom 2541, because occupancy 0.470 <= existing 0.470 in 1pii Skipped atom 2543, because occupancy 0.550 <= existing 0.550 in 1pii Skipped atom 2545, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 2547, because occupancy 0.490 <= existing 0.540 in 1pii Skipped atom 2549, because occupancy 0.440 <= existing 0.510 in 1pii Skipped atom 2902, because occupancy 0.620 <= existing 0.620 in 1pii Skipped atom 2906, because occupancy 0.600 <= existing 0.600 in 1pii Skipped atom 2908, because occupancy 0.480 <= existing 0.480 in 1pii Skipped atom 2910, because occupancy 0.510 <= existing 0.520 in 1pii Skipped atom 2912, because occupancy 0.410 <= existing 0.480 in 1pii Skipped atom 2914, because occupancy 0.350 <= existing 0.470 in 1pii Skipped atom 2918, because occupancy 0.380 <= existing 0.420 in 1pii Skipped atom 2922, because occupancy 0.560 <= existing 0.670 in 1pii # 1pii.40.83 read from T0506.t2k.many.frag # adding 1pii to template set # found chain 1pii in template set T0506 40 :AALATLDPV 1pii 84 :ISVLTDEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18101 # 1twdA.40.24 read from T0506.t2k.many.frag # found chain 1twdA in training set T0506 40 :AALATLDPV 1twdA 25 :VELCAAPKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18102 # 1nlfA.40.136 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 Warning: unaligning (T0506)P47 (1nlfA)R144 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AAL 1nlfA 137 :MVL T0506 45 :LD 1nlfA 142 :LR T0506 48 :V 1nlfA 145 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=18105 1w6gA expands to /projects/compbio/data/pdb/1w6g.pdb.gz 1w6gA:Skipped atom 173, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 453, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 2006, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 2008, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 2010, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 2012, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 2014, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 2904, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 2906, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 2908, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 2910, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 2912, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 2914, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 3223, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 3226, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 5158, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 5161, because occupancy 0.500 <= existing 0.500 in 1w6gA Bad short name: C1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: O2 for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: O4 for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: O5 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Skipped atom 7294, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 7296, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 7298, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 8803, because occupancy 0.200 <= existing 0.800 in 1w6gA Skipped atom 8805, because occupancy 0.200 <= existing 0.800 in 1w6gA Skipped atom 8807, because occupancy 0.200 <= existing 0.800 in 1w6gA Skipped atom 8809, because occupancy 0.200 <= existing 0.800 in 1w6gA Skipped atom 8811, because occupancy 0.200 <= existing 0.800 in 1w6gA Skipped atom 8813, because occupancy 0.200 <= existing 0.800 in 1w6gA Skipped atom 8887, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 8889, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 8891, because occupancy 0.300 <= existing 0.700 in 1w6gA Skipped atom 8999, because occupancy 0.500 <= existing 0.500 in 1w6gA Skipped atom 9001, because occupancy 0.500 <= existing 0.500 in 1w6gA # 1w6gA.40.37 read from T0506.t2k.many.frag # adding 1w6gA to template set # found chain 1w6gA in template set Warning: unaligning (T0506)A43 (1w6gA)G43 because Y (epsilon') conformation "forbidden" or filtered. T0506 40 :AAL 1w6gA 40 :AYL T0506 44 :TLDPV 1w6gA 44 :VLDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18107 # 1od6A.40.29 read from T0506.t2k.many.frag # found chain 1od6A in training set Warning: unaligning (T0506)P47 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1od6A)Q43 T0506 40 :AALATLD 1od6A 30 :VTVAVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18108 # 1k7cA.40.127 read from T0506.t2k.many.frag # found chain 1k7cA in training set Warning: unaligning (T0506)P47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1k7cA)N136 Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1k7cA)N136 T0506 40 :AALATLD 1k7cA 128 :VILSSQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18109 # 1q74A.41.131 read from T0506.t2k.many.frag # found chain 1q74A in training set T0506 41 :ALATLDPVS 1q74A 132 :VVVTYDPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18110 # 1o0sA.41.400 read from T0506.t2k.many.frag # found chain 1o0sA in template set T0506 41 :ALATLDPVS 1o0sA 401 :ALIGASTVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18111 # 1tjyA.41.63 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)A43 (1tjyA)V90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1tjyA)S94 because E (beta_S) conformation "forbidden" or filtered. T0506 41 :AL 1tjyA 88 :II T0506 44 :TLD 1tjyA 91 :SAV T0506 48 :VS 1tjyA 95 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=18114 # 1w9hA.41.110 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)P47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w9hA)Y118 Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w9hA)Y118 T0506 41 :ALATLD 1w9hA 111 :IMLVLP T0506 49 :S 1w9hA 119 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=18116 # 1c93A.41.81 read from T0506.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0506)A41 (1c93A)L87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1c93A)N93 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATLD 1c93A 88 :LSVLG T0506 48 :VS 1c93A 94 :HQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=18118 # 2f5tX.41.25 read from T0506.t2k.many.frag # found chain 2f5tX in template set T0506 41 :ALATLDPVS 2f5tX 135 :VIVVTPSEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18119 1b43A expands to /projects/compbio/data/pdb/1b43.pdb.gz 1b43A:# 1b43A.41.34 read from T0506.t2k.many.frag # adding 1b43A to template set # found chain 1b43A in template set Warning: unaligning (T0506)T44 (1b43A)T37 because G (3-10) conformation "forbidden" or filtered. T0506 41 :ALA 1b43A 34 :FLS T0506 45 :LDPVS 1b43A 38 :IRQKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18121 1w8sA expands to /projects/compbio/data/pdb/1w8s.pdb.gz 1w8sA:Skipped atom 267, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 269, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 271, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 273, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 790, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 792, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1672, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1674, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1676, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1678, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1680, because occupancy 0.350 <= existing 0.650 in 1w8sA # 1w8sA.41.108 read from T0506.t2k.many.frag # adding 1w8sA to template set # found chain 1w8sA in template set Warning: unaligning (T0506)V48 (1w8sA)G116 because T (delta_L) conformation "forbidden" or filtered. T0506 41 :ALATLDP 1w8sA 109 :VGYTIYP T0506 49 :S 1w8sA 117 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=18123 # 1w4rA.41.120 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)P47 (1w4rA)G126 because E (beta_S) conformation "forbidden" or filtered. T0506 41 :ALATLD 1w4rA 120 :IVAALD T0506 48 :VS 1w4rA 127 :TF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18125 # 1w6gA.41.38 read from T0506.t2k.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)A43 (1w6gA)G43 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :AL 1w6gA 41 :YL T0506 44 :TLDPVS 1w6gA 44 :VLDPAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18127 # 2f62A.41.70 read from T0506.t2k.many.frag # found chain 2f62A in template set Warning: unaligning (T0506)A41 (2f62A)V71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2f62A)R79 because L (left) conformation "forbidden" or filtered. T0506 42 :LATLDPV 2f62A 72 :IADLSPF Number of specific fragments extracted= 1 number of extra gaps= 2 total=18128 # 1chd.41.38 read from T0506.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0506)D46 (1chd)H190 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1chd)M191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1chd)P193 because P (beta_P) conformation "forbidden" or filtered. T0506 41 :ALATL 1chd 185 :VIITQ T0506 48 :V 1chd 192 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=18130 # 1rx0A.41.134 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)A41 (1rx0A)S135 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1rx0A)C137 because D (zeta) conformation "forbidden" or filtered. T0506 42 :L 1rx0A 136 :Y T0506 44 :TLDPVS 1rx0A 138 :LTEPGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=18132 # 8abp.41.60 read from T0506.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A41 (8abp)F61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (8abp)D67 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATLD 8abp 62 :VICTP T0506 48 :VS 8abp 68 :PK Number of specific fragments extracted= 2 number of extra gaps= 2 total=18134 # 1kufA.41.97 read from T0506.t2k.many.frag # found chain 1kufA in template set Warning: unaligning (T0506)A41 (1kufA)Q98 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATLDPVS 1kufA 99 :LLTDTNFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18135 # 1rttA.41.76 read from T0506.t2k.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)P47 (1rttA)Y83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1rttA)N84 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1rttA)Y85 because L (left) conformation "forbidden" or filtered. T0506 41 :ALATLD 1rttA 77 :LFATPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18136 # 1mw9X.41.106 read from T0506.t2k.many.frag # found chain 1mw9X in training set T0506 41 :ALATLDPVS 1mw9X 107 :YLATDLDRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18137 1l8aA expands to /projects/compbio/data/pdb/1l8a.pdb.gz 1l8aA:# 1l8aA.41.385 read from T0506.t2k.many.frag # adding 1l8aA to template set # found chain 1l8aA in template set Warning: unaligning (T0506)V48 (1l8aA)G393 because L (left) conformation "forbidden" or filtered. T0506 41 :ALATLDP 1l8aA 386 :ILAHTIK T0506 49 :S 1l8aA 394 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=18139 # 1oboA.41.84 read from T0506.t2k.many.frag # found chain 1oboA in training set Warning: unaligning (T0506)L45 (1oboA)G1089 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1oboA)D1090 because D (zeta) conformation "forbidden" or filtered. T0506 41 :ALAT 1oboA 1085 :YFGT T0506 47 :PVS 1oboA 1091 :QIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18141 # 2axoA.41.74 read from T0506.t2k.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)T44 (2axoA)Y78 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (2axoA)V80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2axoA)D81 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2axoA)W83 because G (3-10) conformation "forbidden" or filtered. T0506 41 :ALA 2axoA 75 :GLS T0506 45 :L 2axoA 79 :H T0506 48 :V 2axoA 82 :Y Number of specific fragments extracted= 3 number of extra gaps= 3 total=18144 # 1jftA.41.117 read from T0506.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)D46 (1jftA)S124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1jftA)E125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1jftA)P127 because P (beta_P) conformation "forbidden" or filtered. T0506 41 :ALATL 1jftA 119 :LLVMC T0506 48 :V 1jftA 126 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=18146 1rljA expands to /projects/compbio/data/pdb/1rlj.pdb.gz 1rljA:# 1rljA.41.76 read from T0506.t2k.many.frag # adding 1rljA to template set # found chain 1rljA in template set Warning: unaligning (T0506)L45 (1rljA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :ALAT 1rljA 68 :VAAS T0506 46 :DPVS 1rljA 73 :NKVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=18148 # 1twdA.41.25 read from T0506.t2k.many.frag # found chain 1twdA in training set Warning: unaligning (T0506)L45 (1twdA)A30 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1twdA)E33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1twdA)G34 because T (delta_L) conformation "forbidden" or filtered. T0506 41 :ALAT 1twdA 26 :ELCA T0506 46 :DP 1twdA 31 :PK Number of specific fragments extracted= 2 number of extra gaps= 2 total=18150 # 1zaiA.41.28 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)D46 (1zaiA)E34 because P (beta_P) conformation "forbidden" or filtered. T0506 41 :ALATL 1zaiA 29 :ILAAD T0506 47 :PVS 1zaiA 35 :STG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18152 # 1gci.41.147 read from T0506.t2k.many.frag # found chain 1gci in training set Warning: unaligning (T0506)A43 (1gci)A152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1gci)G154 because S (epsilon) conformation "forbidden" or filtered. T0506 41 :AL 1gci 150 :VA T0506 44 :T 1gci 153 :S T0506 46 :DPVS 1gci 155 :NSGA Number of specific fragments extracted= 3 number of extra gaps= 2 total=18155 1sflA expands to /projects/compbio/data/pdb/1sfl.pdb.gz 1sflA:# 1sflA.41.64 read from T0506.t2k.many.frag # adding 1sflA to template set # found chain 1sflA in template set T0506 41 :ALATLDPVS 1sflA 65 :LLVTYRTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18156 # 1f9vA.41.87 read from T0506.t2k.many.frag # found chain 1f9vA in training set Warning: unaligning (T0506)L45 (1f9vA)G474 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1f9vA)G477 because T (delta_L) conformation "forbidden" or filtered. T0506 41 :ALAT 1f9vA 470 :IFAY T0506 46 :DP 1f9vA 475 :QT T0506 49 :S 1f9vA 478 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=18159 # 1chd.41.39 read from T0506.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0506)A41 (1chd)I186 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1chd)T188 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1chd)M191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1chd)G194 because T (delta_L) conformation "forbidden" or filtered. T0506 42 :L 1chd 187 :I T0506 44 :TL 1chd 189 :QH T0506 47 :PV 1chd 192 :PP Number of specific fragments extracted= 3 number of extra gaps= 4 total=18162 1wbhA expands to /projects/compbio/data/pdb/1wbh.pdb.gz 1wbhA:# 1wbhA.41.44 read from T0506.t2k.many.frag # adding 1wbhA to template set # found chain 1wbhA in template set Warning: unaligning (T0506)A41 (1wbhA)L44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1wbhA)T50 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATLD 1wbhA 45 :NVTLR T0506 48 :VS 1wbhA 51 :EC Number of specific fragments extracted= 2 number of extra gaps= 2 total=18164 1qo0D expands to /projects/compbio/data/pdb/1qo0.pdb.gz 1qo0D:# 1qo0D.41.55 read from T0506.t2k.many.frag # adding 1qo0D to template set # found chain 1qo0D in template set Warning: unaligning (T0506)A41 (1qo0D)V56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1qo0D)T58 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :L 1qo0D 57 :F T0506 44 :TLDPVS 1qo0D 59 :SIFQNR Number of specific fragments extracted= 2 number of extra gaps= 2 total=18166 # 1q74A.42.132 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)V48 (1q74A)N139 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1q74A)G140 because L (left) conformation "forbidden" or filtered. T0506 42 :LATLDP 1q74A 133 :VVTYDP T0506 50 :G 1q74A 141 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18168 # 1b43A.42.35 read from T0506.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)T44 (1b43A)T37 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1b43A)R39 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :LA 1b43A 35 :LS T0506 45 :L 1b43A 38 :I T0506 47 :PVSG 1b43A 40 :QKDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=18171 # 1o0sA.42.401 read from T0506.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0506)D46 (1o0sA)S406 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATL 1o0sA 402 :LIGA T0506 47 :PVSG 1o0sA 407 :TVRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18173 # 1tjyA.42.64 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)P47 (1tjyA)S94 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATLD 1tjyA 89 :IVSAV T0506 48 :VSG 1tjyA 95 :PDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18175 1gycA expands to /projects/compbio/data/pdb/1gyc.pdb.gz 1gycA:Skipped atom 263, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 265, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 1774, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1776, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1778, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1780, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1782, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1784, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1786, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1788, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 1790, because occupancy 0.300 <= existing 0.700 in 1gycA Skipped atom 2323, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2325, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2327, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2329, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2331, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2333, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2335, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2337, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2420, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2422, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2424, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2426, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2428, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2430, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2432, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2434, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2461, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2463, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2465, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2467, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2469, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2471, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2685, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2687, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2689, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2691, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2693, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2695, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2697, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2959, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2961, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2963, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2965, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2967, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2969, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2971, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 2973, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3724, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3726, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3728, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3730, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3732, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3734, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3736, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3738, because occupancy 0.500 <= existing 0.500 in 1gycA Skipped atom 3740, because occupancy 0.500 <= existing 0.500 in 1gycA # 1gycA.42.425 read from T0506.t2k.many.frag # adding 1gycA to template set # found chain 1gycA in template set Warning: unaligning (T0506)T44 (1gycA)T428 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1gycA)G429 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1gycA)T430 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LA 1gycA 426 :VS T0506 47 :PVSG 1gycA 431 :PAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18177 # 2f62A.42.71 read from T0506.t2k.many.frag # found chain 2f62A in template set Warning: unaligning (T0506)D46 (2f62A)S76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2f62A)R79 because L (left) conformation "forbidden" or filtered. T0506 42 :LATL 2f62A 72 :IADL T0506 47 :PV 2f62A 77 :PF T0506 50 :G 2f62A 80 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=18180 # 1chd.42.39 read from T0506.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0506)P47 (1chd)M191 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :LATLD 1chd 186 :IITQH T0506 48 :VSG 1chd 192 :PPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18182 # 1w6gA.42.39 read from T0506.t2k.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)A43 (1w6gA)G43 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :L 1w6gA 42 :L T0506 44 :TLDPVSG 1w6gA 44 :VLDPARG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18184 1pmmA expands to /projects/compbio/data/pdb/1pmm.pdb.gz 1pmmA:Skipped atom 1019, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 1947, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 3346, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 3348, because occupancy 0.500 <= existing 0.500 in 1pmmA Skipped atom 3350, because occupancy 0.500 <= existing 0.500 in 1pmmA # 1pmmA.42.365 read from T0506.t2k.many.frag # adding 1pmmA to template set # found chain 1pmmA in template set Warning: unaligning (T0506)D46 (1pmmA)R370 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :LATL 1pmmA 366 :ICTG T0506 47 :PVSG 1pmmA 371 :PDEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18186 # 1w8sA.42.109 read from T0506.t2k.many.frag # found chain 1w8sA in template set T0506 42 :LATLDPVSG 1w8sA 110 :GYTIYPGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18187 # 1k4iA.42.27 read from T0506.t2k.many.frag # found chain 1k4iA in training set T0506 42 :LATLDPVSG 1k4iA 28 :VVVLDDPSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18188 1lml expands to /projects/compbio/data/pdb/1lml.pdb.gz 1lml:Warning: there is no chain 1lml will retry with 1lmlA # 1lml.42.114 read from T0506.t2k.many.frag # adding 1lml to template set # found chain 1lml in template set Warning: unaligning (T0506)P47 (1lml)S219 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :LATLD 1lml 214 :VASVP T0506 48 :VSG 1lml 220 :EEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18190 # 1rljA.42.77 read from T0506.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0506)D46 (1rljA)N73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1rljA)G77 because S (epsilon) conformation "forbidden" or filtered. T0506 42 :LATL 1rljA 69 :AASG T0506 47 :PVS 1rljA 74 :KVW Number of specific fragments extracted= 2 number of extra gaps= 2 total=18192 # 1m65A.42.72 read from T0506.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0506)P47 (1m65A)N78 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :LATLD 1m65A 73 :EANIK T0506 48 :VSG 1m65A 79 :VDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18194 # 1sflA.42.65 read from T0506.t2k.many.frag # found chain 1sflA in template set Warning: unaligning (T0506)D46 (1sflA)R70 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :LATL 1sflA 66 :LVTY T0506 47 :PVSG 1sflA 71 :TKLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18196 # 1c93A.42.82 read from T0506.t2k.many.frag # found chain 1c93A in template set Warning: unaligning (T0506)P47 (1c93A)N93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1c93A)H94 because L (left) conformation "forbidden" or filtered. T0506 42 :LATLD 1c93A 88 :LSVLG T0506 49 :SG 1c93A 95 :QG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18198 # 1kufA.42.98 read from T0506.t2k.many.frag # found chain 1kufA in template set T0506 42 :LATLDPVSG 1kufA 99 :LLTDTNFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18199 # 1rljA.42.48 read from T0506.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0506)L45 (1rljA)Y43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1rljA)T45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1rljA)F47 because L (left) conformation "forbidden" or filtered. T0506 42 :LAT 1rljA 40 :LVT T0506 46 :D 1rljA 44 :T T0506 48 :V 1rljA 46 :N T0506 50 :G 1rljA 48 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=18203 # 1oboA.42.85 read from T0506.t2k.many.frag # found chain 1oboA in training set Warning: unaligning (T0506)A43 (1oboA)G1087 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :L 1oboA 1086 :F T0506 44 :TLDPVSG 1oboA 1088 :TGDQIGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18205 1s4nA expands to /projects/compbio/data/pdb/1s4n.pdb.gz 1s4nA:# 1s4nA.42.30 read from T0506.t2k.many.frag # adding 1s4nA to template set # found chain 1s4nA in template set Warning: unaligning (T0506)D46 (1s4nA)V129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1s4nA)R130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1s4nA)E133 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATL 1s4nA 125 :YVTL T0506 48 :VS 1s4nA 131 :NK Number of specific fragments extracted= 2 number of extra gaps= 2 total=18207 # 1w9hA.42.111 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)D46 (1w9hA)P116 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w9hA)Y118 Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w9hA)Y118 T0506 42 :LATL 1w9hA 112 :MLVL T0506 49 :SG 1w9hA 119 :NT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18209 # 1w4rA.42.121 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)P47 (1w4rA)G126 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATLD 1w4rA 121 :VAALD T0506 48 :VSG 1w4rA 127 :TFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18211 1uvjA expands to /projects/compbio/data/pdb/1uvj.pdb.gz 1uvjA:# 1uvjA.42.364 read from T0506.t2k.many.frag # adding 1uvjA to template set # found chain 1uvjA in template set T0506 42 :LATLDPVSG 1uvjA 365 :VYVGAPAPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18212 2c9aA expands to /projects/compbio/data/pdb/2c9a.pdb.gz 2c9aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2c9aA.42.124 read from T0506.t2k.many.frag # adding 2c9aA to template set # found chain 2c9aA in template set Warning: unaligning (T0506)A43 (2c9aA)A146 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2c9aA)F150 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2c9aA)P152 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2c9aA)N153 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :L 2c9aA 145 :L T0506 44 :TLD 2c9aA 147 :IST T0506 48 :V 2c9aA 151 :W Number of specific fragments extracted= 3 number of extra gaps= 3 total=18215 2cfeA expands to /projects/compbio/data/pdb/2cfe.pdb.gz 2cfeA:Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2cfeA Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2cfeA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2cfeA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2cfeA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 2cfeA # 2cfeA.42.95 read from T0506.t2k.many.frag # adding 2cfeA to template set # found chain 2cfeA in template set Warning: unaligning (T0506)D46 (2cfeA)N100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2cfeA)A101 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATL 2cfeA 96 :LSMA T0506 48 :VSG 2cfeA 102 :GPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18217 # 1sflA.42.66 read from T0506.t2k.many.frag # found chain 1sflA in template set Warning: unaligning (T0506)S49 (1sflA)Q74 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATLDPV 1sflA 67 :VTYRTKL T0506 50 :G 1sflA 75 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=18219 # 1l8aA.42.386 read from T0506.t2k.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)D46 (1l8aA)I391 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1l8aA)G393 because L (left) conformation "forbidden" or filtered. T0506 42 :LATL 1l8aA 387 :LAHT T0506 47 :P 1l8aA 392 :K T0506 49 :SG 1l8aA 394 :YG Number of specific fragments extracted= 3 number of extra gaps= 2 total=18222 # 1qo0D.42.56 read from T0506.t2k.many.frag # found chain 1qo0D in template set T0506 42 :LATLDPVSG 1qo0D 57 :FTSIFQNRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18223 2calA expands to /projects/compbio/data/pdb/2cal.pdb.gz 2calA:Skipped atom 93, because occupancy 0.360 <= existing 0.640 in 2calA Skipped atom 95, because occupancy 0.360 <= existing 0.640 in 2calA Skipped atom 97, because occupancy 0.360 <= existing 0.640 in 2calA Skipped atom 167, because occupancy 0.420 <= existing 0.580 in 2calA Skipped atom 169, because occupancy 0.420 <= existing 0.580 in 2calA Skipped atom 171, because occupancy 0.420 <= existing 0.580 in 2calA Skipped atom 266, because occupancy 0.480 <= existing 0.520 in 2calA Skipped atom 268, because occupancy 0.480 <= existing 0.520 in 2calA Skipped atom 270, because occupancy 0.480 <= existing 0.520 in 2calA Skipped atom 272, because occupancy 0.480 <= existing 0.520 in 2calA Skipped atom 274, because occupancy 0.480 <= existing 0.520 in 2calA Skipped atom 1422, because occupancy 0.290 <= existing 0.360 in 2calA Skipped atom 1423, because occupancy 0.260 <= existing 0.360 in 2calA Skipped atom 1425, because occupancy 0.290 <= existing 0.360 in 2calA Skipped atom 1426, because occupancy 0.260 <= existing 0.360 in 2calA Skipped atom 1428, because occupancy 0.290 <= existing 0.360 in 2calA Skipped atom 1429, because occupancy 0.260 <= existing 0.360 in 2calA Skipped atom 1431, because occupancy 0.290 <= existing 0.360 in 2calA Skipped atom 1432, because occupancy 0.260 <= existing 0.360 in 2calA Skipped atom 1636, because occupancy 0.440 <= existing 0.560 in 2calA Skipped atom 1638, because occupancy 0.440 <= existing 0.560 in 2calA Skipped atom 1815, because occupancy 0.270 <= existing 0.730 in 2calA Skipped atom 1817, because occupancy 0.270 <= existing 0.730 in 2calA Skipped atom 1819, because occupancy 0.270 <= existing 0.730 in 2calA Skipped atom 2078, because occupancy 0.490 <= existing 0.510 in 2calA Skipped atom 2080, because occupancy 0.490 <= existing 0.510 in 2calA Skipped atom 2082, because occupancy 0.490 <= existing 0.510 in 2calA # 2calA.42.40 read from T0506.t2k.many.frag # adding 2calA to template set # found chain 2calA in template set Warning: unaligning (T0506)L45 (2calA)V1045 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (2calA)G1048 because T (delta_L) conformation "forbidden" or filtered. T0506 42 :LAT 2calA 1042 :AAA T0506 46 :DP 2calA 1046 :LP T0506 49 :SG 2calA 1049 :FP Number of specific fragments extracted= 3 number of extra gaps= 2 total=18226 # 2asfA.42.24 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A43 (2asfA)L26 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (2asfA)L29 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :L 2asfA 25 :M T0506 44 :TL 2asfA 27 :TT T0506 47 :PVSG 2asfA 30 :RADN Number of specific fragments extracted= 3 number of extra gaps= 2 total=18229 # 1b43A.43.36 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 43 :ATLDPVSGY 1b43A 36 :STIRQKDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18230 # 1q74A.43.133 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)S49 (1q74A)G140 because L (left) conformation "forbidden" or filtered. T0506 43 :ATLDPV 1q74A 134 :VTYDPN T0506 50 :GY 1q74A 141 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18232 # 1gycA.43.426 read from T0506.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0506)A43 (1gycA)S427 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1gycA)G429 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1gycA)T430 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :T 1gycA 428 :T T0506 47 :PVSGY 1gycA 431 :PAAGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=18234 # 2f62A.43.72 read from T0506.t2k.many.frag # found chain 2f62A in template set Warning: unaligning (T0506)S49 (2f62A)R79 because L (left) conformation "forbidden" or filtered. T0506 43 :ATLDPV 2f62A 73 :ADLSPF T0506 50 :GY 2f62A 80 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18236 # 2asfA.43.25 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 43 :ATLDPVSGY 2asfA 26 :LTTLRADNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18237 2btoA expands to /projects/compbio/data/pdb/2bto.pdb.gz 2btoA:# 2btoA.43.306 read from T0506.t2k.many.frag # adding 2btoA to template set # found chain 2btoA in template set Warning: unaligning (T0506)L45 (2btoA)C309 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :AT 2btoA 307 :AA T0506 46 :DPVSGY 2btoA 310 :SPMEGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18239 2fa1A expands to /projects/compbio/data/pdb/2fa1.pdb.gz 2fa1A:Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 29, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 349, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 351, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 353, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 355, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 357, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 359, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 361, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 363, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 365, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 791, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 793, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 797, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 799, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 801, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 811, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 946, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 950, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 952, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1019, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1117, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1119, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1129, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1131, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1218, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1220, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1222, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1224, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1226, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1256, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1258, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1260, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1262, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1264, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1266, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1268, because occupancy 0.500 <= existing 0.500 in 2fa1A Skipped atom 1270, because occupancy 0.500 <= existing 0.500 in 2fa1A # 2fa1A.43.51 read from T0506.t2k.many.frag # adding 2fa1A to template set # found chain 2fa1A in template set Warning: unaligning (T0506)A43 (2fa1A)R133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (2fa1A)R136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2fa1A)R137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. T0506 44 :TL 2fa1A 134 :TL T0506 48 :V 2fa1A 138 :V T0506 50 :GY 2fa1A 140 :GV Number of specific fragments extracted= 3 number of extra gaps= 3 total=18242 # 1o0sA.43.402 read from T0506.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0506)S49 (1o0sA)R409 because P (beta_P) conformation "forbidden" or filtered. T0506 43 :ATLDPV 1o0sA 403 :IGASTV T0506 50 :GY 1o0sA 410 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18244 # 1lml.43.115 read from T0506.t2k.many.frag # found chain 1lml in template set Warning: unaligning (T0506)P47 (1lml)S219 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :ATLD 1lml 215 :ASVP T0506 48 :VSGY 1lml 220 :EEGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18246 # 1pmmA.43.366 read from T0506.t2k.many.frag # found chain 1pmmA in template set Warning: unaligning (T0506)L45 (1pmmA)G369 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1pmmA)G374 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :AT 1pmmA 367 :CT T0506 46 :DPVS 1pmmA 370 :RPDE T0506 51 :Y 1pmmA 375 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=18249 # 1k4iA.43.28 read from T0506.t2k.many.frag # found chain 1k4iA in training set T0506 43 :ATLDPVSGY 1k4iA 29 :VVLDDPSRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18250 # 1w6gA.43.40 read from T0506.t2k.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)A43 (1w6gA)G43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1w6gA)A51 because L (left) conformation "forbidden" or filtered. T0506 44 :TLDPVSG 1w6gA 44 :VLDPARG Number of specific fragments extracted= 1 number of extra gaps= 2 total=18251 # 1w8sA.43.110 read from T0506.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)D46 (1w8sA)Y114 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1w8sA)G116 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1w8sA)F119 because G (3-10) conformation "forbidden" or filtered. T0506 43 :ATL 1w8sA 111 :YTI T0506 47 :P 1w8sA 115 :P T0506 49 :SG 1w8sA 117 :SG Number of specific fragments extracted= 3 number of extra gaps= 3 total=18254 # 1m65A.43.73 read from T0506.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0506)P47 (1m65A)N78 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :ATLD 1m65A 74 :ANIK T0506 48 :VSGY 1m65A 79 :VDGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18256 # 1rljA.43.49 read from T0506.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0506)L45 (1rljA)Y43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1rljA)T45 because E (beta_S) conformation "forbidden" or filtered. T0506 43 :AT 1rljA 41 :VT T0506 46 :D 1rljA 44 :T T0506 48 :VSGY 1rljA 46 :NFGQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=18259 # 1uvjA.43.365 read from T0506.t2k.many.frag # found chain 1uvjA in template set Warning: unaligning (T0506)V48 (1uvjA)A371 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :ATLDP 1uvjA 366 :YVGAP T0506 49 :SGY 1uvjA 372 :PEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18261 # 1rljA.43.78 read from T0506.t2k.many.frag # found chain 1rljA in template set Warning: unaligning (T0506)L45 (1rljA)G72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1rljA)N73 because E (beta_S) conformation "forbidden" or filtered. T0506 43 :AT 1rljA 70 :AS T0506 47 :PVSGY 1rljA 74 :KVWGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18263 # 1kufA.43.99 read from T0506.t2k.many.frag # found chain 1kufA in template set Warning: unaligning (T0506)Y51 (1kufA)N108 because L (left) conformation "forbidden" or filtered. T0506 43 :ATLDPVSG 1kufA 100 :LTDTNFAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18264 # 1tjyA.43.65 read from T0506.t2k.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)P47 (1tjyA)S94 because E (beta_S) conformation "forbidden" or filtered. T0506 43 :ATLD 1tjyA 90 :VSAV T0506 48 :VSGY 1tjyA 95 :PDGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18266 # 1chd.43.40 read from T0506.t2k.many.frag # found chain 1chd in training set Warning: unaligning (T0506)A43 (1chd)I187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1chd)M191 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :TLD 1chd 188 :TQH T0506 48 :VSGY 1chd 192 :PPGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=18268 # 2pspA.43.34 read from T0506.t2k.many.frag # found chain 2pspA in template set T0506 43 :ATLDPVSGY 2pspA 35 :CFDSQVPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18269 1hq0A expands to /projects/compbio/data/pdb/1hq0.pdb.gz 1hq0A:Skipped atom 1151, because occupancy 0.500 <= existing 0.500 in 1hq0A # 1hq0A.43.217 read from T0506.t2k.many.frag # adding 1hq0A to template set # found chain 1hq0A in template set Warning: unaligning (T0506)L45 (1hq0A)Y939 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1hq0A)S941 because E (beta_S) conformation "forbidden" or filtered. T0506 43 :AT 1hq0A 937 :IT T0506 46 :D 1hq0A 940 :S T0506 48 :VSGY 1hq0A 942 :SEKK Number of specific fragments extracted= 3 number of extra gaps= 2 total=18272 # 2cfeA.43.96 read from T0506.t2k.many.frag # found chain 2cfeA in template set Warning: unaligning (T0506)D46 (2cfeA)N100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2cfeA)A101 because G (3-10) conformation "forbidden" or filtered. T0506 43 :ATL 2cfeA 97 :SMA T0506 48 :VSGY 2cfeA 102 :GPNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18274 # 2calA.43.41 read from T0506.t2k.many.frag # found chain 2calA in template set Warning: unaligning (T0506)L45 (2calA)V1045 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (2calA)L1046 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2calA)P1050 because P (beta_P) conformation "forbidden" or filtered. T0506 43 :AT 2calA 1043 :AA T0506 47 :PVS 2calA 1047 :PGF T0506 51 :Y 2calA 1051 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=18277 # 1ty9A.43.60 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)L45 (1ty9A)T63 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :AT 1ty9A 61 :LA T0506 46 :DPVSGY 1ty9A 64 :ADSQGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=18279 # 1w4rA.43.122 read from T0506.t2k.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)P47 (1w4rA)G126 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1w4rA)Q129 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1w4rA)R130 because L (left) conformation "forbidden" or filtered. T0506 43 :ATLD 1w4rA 122 :AALD T0506 48 :VS 1w4rA 127 :TF Number of specific fragments extracted= 2 number of extra gaps= 2 total=18281 # 1oboA.43.86 read from T0506.t2k.many.frag # found chain 1oboA in training set Warning: unaligning (T0506)D46 (1oboA)D1090 because D (zeta) conformation "forbidden" or filtered. T0506 43 :ATL 1oboA 1087 :GTG T0506 47 :PVSGY 1oboA 1091 :QIGYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18283 1b25A expands to /projects/compbio/data/pdb/1b25.pdb.gz 1b25A:# 1b25A.43.78 read from T0506.t2k.many.frag # adding 1b25A to template set # found chain 1b25A in template set Warning: unaligning (T0506)D46 (1b25A)S82 because P (beta_P) conformation "forbidden" or filtered. T0506 43 :ATL 1b25A 79 :AAK T0506 47 :PVSGY 1b25A 83 :PLTGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18285 # 1vl7A.43.34 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)L45 (1vl7A)T25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1vl7A)I26 because E (beta_S) conformation "forbidden" or filtered. T0506 43 :AT 1vl7A 23 :IS T0506 47 :PVSGY 1vl7A 27 :SEQGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18287 # 1lml.43.114 read from T0506.t2k.many.frag # found chain 1lml in template set Warning: unaligning (T0506)D46 (1lml)V217 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1lml)E221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1lml)G222 because T (delta_L) conformation "forbidden" or filtered. T0506 43 :ATL 1lml 214 :VAS T0506 47 :PVS 1lml 218 :PSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=18289 # 1b43A.44.37 read from T0506.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)D46 (1b43A)R39 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :TL 1b43A 37 :TI T0506 47 :PVSGYP 1b43A 40 :QKDGTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18291 # 2btoA.44.307 read from T0506.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)L45 (2btoA)C309 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :T 2btoA 308 :A T0506 46 :DPVSGYP 2btoA 310 :SPMEGRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18293 # 2fa1A.44.52 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)D46 (2fa1A)R136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2fa1A)R137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. T0506 44 :TL 2fa1A 134 :TL T0506 48 :V 2fa1A 138 :V T0506 50 :GYP 2fa1A 140 :GVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=18296 # 2asfA.44.26 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)D46 (2asfA)L29 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TL 2asfA 27 :TT T0506 47 :PVSGYP 2asfA 30 :RADNSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18298 # 1ty9A.44.61 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)L45 (1ty9A)T63 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :T 1ty9A 62 :A T0506 46 :DPVSGYP 1ty9A 64 :ADSQGRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18300 # 1pmmA.44.367 read from T0506.t2k.many.frag # found chain 1pmmA in template set Warning: unaligning (T0506)L45 (1pmmA)G369 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1pmmA)G374 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :T 1pmmA 368 :T T0506 46 :DPVS 1pmmA 370 :RPDE T0506 51 :YP 1pmmA 375 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=18303 # 1vl7A.44.35 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)L45 (1vl7A)T25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1vl7A)Q29 because G (3-10) conformation "forbidden" or filtered. T0506 44 :T 1vl7A 24 :S T0506 46 :DPV 1vl7A 26 :ISE T0506 50 :GYP 1vl7A 30 :GIP Number of specific fragments extracted= 3 number of extra gaps= 2 total=18306 # 1xhnA.44.39 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)T44 (1xhnA)T40 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1xhnA)R45 because P (beta_P) conformation "forbidden" or filtered. T0506 45 :LDPV 1xhnA 41 :LEAV T0506 50 :GYP 1xhnA 46 :GRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=18308 # 1gycA.44.427 read from T0506.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0506)L45 (1gycA)G429 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1gycA)N436 because D (zeta) conformation "forbidden" or filtered. T0506 44 :T 1gycA 428 :T T0506 46 :DPVSGY 1gycA 430 :TPAAGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=18310 # 2pspA.44.35 read from T0506.t2k.many.frag # found chain 2pspA in template set T0506 44 :TLDPVSGYP 2pspA 36 :FDSQVPGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18311 # 1o0sA.44.403 read from T0506.t2k.many.frag # found chain 1o0sA in template set Warning: unaligning (T0506)D46 (1o0sA)S406 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TL 1o0sA 404 :GA T0506 47 :PVSGYP 1o0sA 407 :TVRGAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18313 1uc2A expands to /projects/compbio/data/pdb/1uc2.pdb.gz 1uc2A:# 1uc2A.44.64 read from T0506.t2k.many.frag # adding 1uc2A to template set # found chain 1uc2A in template set T0506 44 :TLDPVSGYP 1uc2A 65 :DGHQGYGFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18314 1lshA expands to /projects/compbio/data/pdb/1lsh.pdb.gz 1lshA:Bad short name: OE for alphabet: pdb_atoms Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 144, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 224, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 226, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 228, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 230, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 236, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 463, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 467, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 469, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 471, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 473, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 475, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 674, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1079, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1167, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1173, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1285, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1289, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1291, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1293, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1295, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1297, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1649, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1653, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1655, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1657, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1659, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1760, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1764, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1766, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1768, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1770, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1860, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1864, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1866, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1868, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1904, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1906, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1910, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1938, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1940, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 1942, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2169, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2175, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2253, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2257, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2259, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2261, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2263, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2265, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2282, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2286, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2288, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2371, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2375, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2377, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2505, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2509, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2511, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2521, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2525, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2527, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2529, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2531, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2533, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2535, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2538, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2542, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2544, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2546, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2548, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2550, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2625, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2629, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2631, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2633, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2710, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2714, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2716, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2718, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2720, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2770, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2774, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2776, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2778, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2780, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 2782, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3113, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3117, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3119, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3121, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3275, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3279, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3281, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3283, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3285, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3287, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3289, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3291, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3404, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3408, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3410, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3412, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3414, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3428, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3432, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3434, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3436, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3438, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3440, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3703, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3707, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3709, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3726, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3730, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3732, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3734, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3736, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3738, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3740, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3742, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3903, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3907, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3909, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3911, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3913, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 3915, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4063, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4067, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4069, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4071, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4073, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4075, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4077, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4079, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4103, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4107, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4109, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4111, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4113, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4115, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4329, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4333, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4335, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4337, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4415, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4419, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4421, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4504, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4508, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4510, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4512, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4587, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4591, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4593, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4595, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4597, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4599, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4601, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4603, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4641, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4645, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4647, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4649, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4651, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4675, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4679, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4681, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4720, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4724, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4726, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4728, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4730, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4732, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4851, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4855, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4857, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4859, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4883, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4887, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4889, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4904, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4908, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4910, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4912, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 4914, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5146, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5148, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5150, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5152, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5154, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5156, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5158, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5308, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5312, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5314, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5316, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5318, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5320, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5554, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5558, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5560, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5562, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5564, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5566, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5683, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5687, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5689, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5691, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5693, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5695, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5697, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5786, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5790, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5792, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5794, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5796, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 5798, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6012, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6016, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6018, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6020, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6236, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6240, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6242, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6406, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6410, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6412, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6414, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6416, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6418, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6420, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6422, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6540, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6544, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6546, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6548, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6786, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6790, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6792, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6794, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6796, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6798, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6800, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 6802, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7011, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7015, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7017, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7019, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7206, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7210, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7212, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7214, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7216, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7218, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7220, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7222, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7305, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7309, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7311, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7313, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7315, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7317, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7388, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7390, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7392, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7394, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7396, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7398, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7406, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7410, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7412, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7414, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7416, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7418, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7420, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7422, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7481, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7485, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7487, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7489, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7491, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7493, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7495, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7497, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7569, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7573, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7575, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7577, because occupancy 0.500 <= existing 0.500 in 1lshA Skipped atom 7579, because occupancy 0.500 <= existing 0.500 in 1lshA # 1lshA.44.17 read from T0506.t2k.many.frag # adding 1lshA to template set # found chain 1lshA in template set Warning: unaligning (T0506)L45 (1lshA)G35 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :T 1lshA 34 :S T0506 46 :DPVSGYP 1lshA 36 :LPEPGVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18316 # 1odhA.44.123 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)P47 (1odhA)G127 because G (3-10) conformation "forbidden" or filtered. T0506 44 :TLD 1odhA 124 :PCR T0506 48 :VSGYP 1odhA 128 :HGGFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18318 # 1q74A.44.134 read from T0506.t2k.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)S49 (1q74A)G140 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1q74A)G143 because T (delta_L) conformation "forbidden" or filtered. T0506 44 :TLDPV 1q74A 135 :TYDPN T0506 50 :GY 1q74A 141 :GY Number of specific fragments extracted= 2 number of extra gaps= 2 total=18320 # 1dqzA.44.131 read from T0506.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0506)P47 (1dqzA)Y137 because D (zeta) conformation "forbidden" or filtered. T0506 44 :TLD 1dqzA 134 :AAY T0506 48 :VSGYP 1dqzA 138 :PQQFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18322 # 1s3eA.44.314 read from T0506.t2k.many.frag # found chain 1s3eA in training set Warning: unaligning (T0506)V48 (1s3eA)G319 because S (epsilon) conformation "forbidden" or filtered. T0506 44 :TLDP 1s3eA 315 :MIID T0506 49 :SGYP 1s3eA 320 :EEAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18324 # 1k4iA.44.29 read from T0506.t2k.many.frag # found chain 1k4iA in training set Warning: unaligning (T0506)P52 (1k4iA)N38 because L (left) conformation "forbidden" or filtered. T0506 44 :TLDPVSGY 1k4iA 30 :VLDDPSRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18325 2af4C expands to /projects/compbio/data/pdb/2af4.pdb.gz 2af4C:Bad short name: OD for alphabet: pdb_atoms # 2af4C.44.137 read from T0506.t2k.many.frag # adding 2af4C to template set # found chain 2af4C in template set Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)K143 Warning: unaligning (T0506)S49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)K143 Warning: unaligning (T0506)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)A145 Warning: unaligning (T0506)Y51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)A145 Warning: unaligning (T0506)P52 (2af4C)A146 because S (epsilon) conformation "forbidden" or filtered. T0506 44 :TLDP 2af4C 138 :IVKT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18326 # 1w8sA.44.111 read from T0506.t2k.many.frag # found chain 1w8sA in template set T0506 44 :TLDPVSGYP 1w8sA 112 :TIYPGSGFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18327 2c8mA expands to /projects/compbio/data/pdb/2c8m.pdb.gz 2c8mA:# 2c8mA.44.25 read from T0506.t2k.many.frag # adding 2c8mA to template set # found chain 2c8mA in template set Warning: unaligning (T0506)P47 (2c8mA)Q29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2c8mA)D32 because P (beta_P) conformation "forbidden" or filtered. T0506 44 :TLD 2c8mA 26 :RSF T0506 48 :VS 2c8mA 30 :YG T0506 51 :YP 2c8mA 33 :KP Number of specific fragments extracted= 3 number of extra gaps= 2 total=18330 1cvrA expands to /projects/compbio/data/pdb/1cvr.pdb.gz 1cvrA:# 1cvrA.44.260 read from T0506.t2k.many.frag # adding 1cvrA to template set # found chain 1cvrA in template set Warning: unaligning (T0506)P47 (1cvrA)Q264 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1cvrA)D266 because L (left) conformation "forbidden" or filtered. T0506 44 :TLD 1cvrA 261 :MRA T0506 48 :V 1cvrA 265 :K T0506 50 :GYP 1cvrA 267 :GKP Number of specific fragments extracted= 3 number of extra gaps= 2 total=18333 # 2f62A.44.73 read from T0506.t2k.many.frag # found chain 2f62A in template set Warning: unaligning (T0506)S49 (2f62A)R79 because L (left) conformation "forbidden" or filtered. T0506 44 :TLDPV 2f62A 74 :DLSPF T0506 50 :GYP 2f62A 80 :GHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18335 1chmA expands to /projects/compbio/data/pdb/1chm.pdb.gz 1chmA:# 1chmA.44.55 read from T0506.t2k.many.frag # adding 1chmA to template set # found chain 1chmA in template set Warning: unaligning (T0506)L45 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)Y59 Warning: unaligning (T0506)D46 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)Y59 Warning: unaligning (T0506)P47 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)C60 Warning: unaligning (T0506)S49 (1chmA)F62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)R64 Warning: unaligning (T0506)Y51 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)R64 T0506 44 :T 1chmA 57 :F T0506 48 :V 1chmA 61 :S T0506 52 :P 1chmA 65 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=18338 1ctt expands to /projects/compbio/data/pdb/1ctt.pdb.gz 1ctt:Warning: there is no chain 1ctt will retry with 1cttA # 1ctt.44.201 read from T0506.t2k.many.frag # adding 1ctt to template set # found chain 1ctt in template set T0506 44 :TLDPVSGYP 1ctt 202 :SHMPYSKSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18339 # 1lml.44.116 read from T0506.t2k.many.frag # found chain 1lml in template set Warning: unaligning (T0506)P47 (1lml)S219 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :TLD 1lml 216 :SVP T0506 48 :VSGYP 1lml 220 :EEGVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18341 # 1m65A.44.74 read from T0506.t2k.many.frag # found chain 1m65A in training set Warning: unaligning (T0506)P47 (1m65A)N78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1m65A)I83 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLD 1m65A 75 :NIK T0506 48 :VSGY 1m65A 79 :VDGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=18343 1wthD expands to /projects/compbio/data/pdb/1wth.pdb.gz 1wthD:# 1wthD.44.1 read from T0506.t2k.many.frag # adding 1wthD to template set # found chain 1wthD in template set Warning: unaligning (T0506)D46 because first residue in template chain is (1wthD)L4 Warning: unaligning (T0506)P47 (1wthD)Q5 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGYP 1wthD 6 :RPGYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18344 # 2furA.44.36 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)D46 (2furA)F38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2furA)I39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 44 :TL 2furA 36 :VS T0506 48 :V 2furA 40 :D T0506 50 :GYP 2furA 42 :GIP Number of specific fragments extracted= 3 number of extra gaps= 2 total=18347 # 2calA.44.42 read from T0506.t2k.many.frag # found chain 2calA in template set Warning: unaligning (T0506)L45 (2calA)V1045 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (2calA)G1048 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2calA)F1049 because P (beta_P) conformation "forbidden" or filtered. T0506 44 :T 2calA 1044 :A T0506 46 :DP 2calA 1046 :LP T0506 50 :GYP 2calA 1050 :PFP Number of specific fragments extracted= 3 number of extra gaps= 2 total=18350 # 1xhnA.45.40 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 45 :LDPVSGYPY 1xhnA 41 :LEAVRGRPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18351 # 1b43A.45.38 read from T0506.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)D46 (1b43A)R39 because Y (epsilon') conformation "forbidden" or filtered. T0506 45 :L 1b43A 38 :I T0506 47 :PVSGYPY 1b43A 40 :QKDGTPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18353 # 2fa1A.45.53 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)P47 (2fa1A)R137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. T0506 45 :LD 2fa1A 135 :LR T0506 48 :V 2fa1A 138 :V T0506 50 :GYPY 2fa1A 140 :GVAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=18356 # 1uc2A.45.65 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)D46 (1uc2A)H67 because Y (epsilon') conformation "forbidden" or filtered. T0506 45 :L 1uc2A 66 :G T0506 47 :PVSGYPY 1uc2A 68 :QGYGFPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18358 # 2btoA.45.308 read from T0506.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)L45 (2btoA)C309 because Y (epsilon') conformation "forbidden" or filtered. T0506 46 :DPVSGYPY 2btoA 310 :SPMEGRFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18359 # 1vl7A.45.36 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 45 :LDPVSGYPY 1vl7A 25 :TISEQGIPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18360 # 1pmmA.45.368 read from T0506.t2k.many.frag # found chain 1pmmA in template set Warning: unaligning (T0506)L45 (1pmmA)G369 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1pmmA)E373 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DPV 1pmmA 370 :RPD T0506 50 :GYPY 1pmmA 374 :GIPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=18362 # 1ty9A.45.62 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)L45 (1ty9A)T63 because Y (epsilon') conformation "forbidden" or filtered. T0506 46 :DPVSGYPY 1ty9A 64 :ADSQGRPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=18363 # 1chmA.45.56 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)L45 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)Y59 Warning: unaligning (T0506)D46 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)Y59 Warning: unaligning (T0506)P47 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)C60 Warning: unaligning (T0506)S49 (1chmA)F62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)R64 Warning: unaligning (T0506)Y51 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)R64 Warning: unaligning (T0506)Y53 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)A67 T0506 48 :V 1chmA 61 :S T0506 52 :P 1chmA 65 :P Number of specific fragments extracted= 2 number of extra gaps= 3 total=18365 # 1odhA.45.124 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)D46 (1odhA)R126 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1odhA)G127 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1odhA)G129 because L (left) conformation "forbidden" or filtered. T0506 45 :L 1odhA 125 :C T0506 48 :V 1odhA 128 :H T0506 50 :GYPY 1odhA 130 :GFPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=18368 # 2asfA.45.27 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 45 :LDPVSGYPY 2asfA 28 :TLRADNSPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18369 # 2pspA.45.36 read from T0506.t2k.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)S49 (2pspA)P41 because P (beta_P) conformation "forbidden" or filtered. T0506 45 :LDPV 2pspA 37 :DSQV T0506 50 :GYPY 2pspA 42 :GVPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=18371 # 1wthD.45.2 read from T0506.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)D46 because first residue in template chain is (1wthD)L4 Warning: unaligning (T0506)P47 (1wthD)Q5 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGYPY 1wthD 6 :RPGYPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18372 1olzA expands to /projects/compbio/data/pdb/1olz.pdb.gz 1olzA:# 1olzA.45.260 read from T0506.t2k.many.frag # adding 1olzA to template set # found chain 1olzA in template set Warning: unaligning (T0506)P52 (1olzA)V268 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPVSGY 1olzA 261 :SRPDSGL T0506 53 :Y 1olzA 269 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=18374 # 1cvrA.45.261 read from T0506.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0506)P47 (1cvrA)Q264 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1cvrA)D266 because L (left) conformation "forbidden" or filtered. T0506 45 :LD 1cvrA 262 :RA T0506 48 :V 1cvrA 265 :K T0506 50 :GYPY 1cvrA 267 :GKPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=18377 # 1lshA.45.18 read from T0506.t2k.many.frag # found chain 1lshA in template set T0506 45 :LDPVSGYPY 1lshA 35 :GLPEPGVNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18378 1xccA expands to /projects/compbio/data/pdb/1xcc.pdb.gz 1xccA:# 1xccA.45.117 read from T0506.t2k.many.frag # adding 1xccA to template set # found chain 1xccA in template set Warning: unaligning (T0506)S49 (1xccA)T122 because G (3-10) conformation "forbidden" or filtered. T0506 45 :LDPV 1xccA 118 :EKDI T0506 50 :GYPY 1xccA 123 :GLPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18380 # 1dqzA.45.132 read from T0506.t2k.many.frag # found chain 1dqzA in training set Warning: unaligning (T0506)P47 (1dqzA)Y137 because D (zeta) conformation "forbidden" or filtered. T0506 45 :LD 1dqzA 135 :AY T0506 48 :VSGYPY 1dqzA 138 :PQQFPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18382 1jfmA expands to /projects/compbio/data/pdb/1jfm.pdb.gz 1jfmA:# 1jfmA.45.82 read from T0506.t2k.many.frag # adding 1jfmA to template set # found chain 1jfmA in template set Warning: unaligning (T0506)Y51 (1jfmA)Y89 because T (delta_L) conformation "forbidden" or filtered. T0506 45 :LDPVSG 1jfmA 83 :THKTNG T0506 52 :PY 1jfmA 90 :PH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18384 # 1gycA.45.428 read from T0506.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0506)L45 (1gycA)G429 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1gycA)N436 because D (zeta) conformation "forbidden" or filtered. T0506 46 :DPVSGY 1gycA 430 :TPAAGD T0506 53 :Y 1gycA 437 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=18386 # 2af4C.45.138 read from T0506.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)K143 Warning: unaligning (T0506)S49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)K143 Warning: unaligning (T0506)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)A145 Warning: unaligning (T0506)Y51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)A145 Warning: unaligning (T0506)P52 (2af4C)A146 because S (epsilon) conformation "forbidden" or filtered. T0506 45 :LDP 2af4C 139 :VKT T0506 53 :Y 2af4C 147 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=18388 # 1rkuA.45.100 read from T0506.t2k.many.frag # found chain 1rkuA in training set Warning: unaligning (T0506)S49 (1rkuA)L104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1rkuA)F106 because L (left) conformation "forbidden" or filtered. T0506 45 :LDPV 1rkuA 100 :LMRQ T0506 50 :G 1rkuA 105 :G T0506 52 :PY 1rkuA 107 :PT Number of specific fragments extracted= 3 number of extra gaps= 2 total=18391 # 1qmgA.45.193 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)Y51 (1qmgA)A271 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 45 :LDPVSG 1qmgA 265 :GKEVNG T0506 53 :Y 1qmgA 273 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=18393 2fnuA expands to /projects/compbio/data/pdb/2fnu.pdb.gz 2fnuA:# 2fnuA.45.164 read from T0506.t2k.many.frag # adding 2fnuA to template set # found chain 2fnuA in template set Warning: unaligning (T0506)G50 (2fnuA)G170 because G (3-10) conformation "forbidden" or filtered. T0506 45 :LDPVS 2fnuA 165 :NKKVG T0506 51 :YPY 2fnuA 171 :FAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18395 # 1ctt.45.202 read from T0506.t2k.many.frag # found chain 1ctt in template set T0506 45 :LDPVSGYPY 1ctt 203 :HMPYSKSPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18396 # 1hq0A.45.71 read from T0506.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0506)P47 (1hq0A)G793 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1hq0A)G796 because S (epsilon) conformation "forbidden" or filtered. T0506 45 :LD 1hq0A 791 :TV T0506 48 :VS 1hq0A 794 :PN T0506 51 :YPY 1hq0A 797 :IPT Number of specific fragments extracted= 3 number of extra gaps= 2 total=18399 # 2furA.45.37 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)P47 (2furA)I39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 45 :LD 2furA 37 :SF T0506 48 :V 2furA 40 :D T0506 50 :GYPY 2furA 42 :GIPY Number of specific fragments extracted= 3 number of extra gaps= 2 total=18402 # 1qw9A.45.398 read from T0506.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0506)L45 (1qw9A)S399 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1qw9A)D401 because G (3-10) conformation "forbidden" or filtered. T0506 46 :D 1qw9A 400 :K T0506 48 :VSGYPY 1qw9A 402 :FTDVPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=18404 # 2c8mA.45.26 read from T0506.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0506)P47 (2c8mA)Q29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2c8mA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2c8mA)D32 because P (beta_P) conformation "forbidden" or filtered. T0506 45 :LD 2c8mA 27 :SF T0506 48 :V 2c8mA 30 :Y T0506 51 :YPY 2c8mA 33 :KPI Number of specific fragments extracted= 3 number of extra gaps= 2 total=18407 1ka9H expands to /projects/compbio/data/pdb/1ka9.pdb.gz 1ka9H:# 1ka9H.45.129 read from T0506.t2k.many.frag # adding 1ka9H to template set # found chain 1ka9H in template set T0506 45 :LDPVSGYPY 1ka9H 130 :FAPLTGRHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18408 # 1xhnA.46.41 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)V48 (1xhnA)V44 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DP 1xhnA 42 :EA T0506 49 :SGYPYT 1xhnA 45 :RGRPFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18410 # 2fa1A.46.54 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)P47 (2fa1A)R137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. T0506 46 :D 2fa1A 136 :R T0506 48 :V 2fa1A 138 :V T0506 50 :GYPYT 2fa1A 140 :GVALC Number of specific fragments extracted= 3 number of extra gaps= 2 total=18413 # 1vl7A.46.37 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)S49 (1vl7A)Q29 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DPV 1vl7A 26 :ISE T0506 50 :GYPYT 1vl7A 30 :GIPNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18415 # 1uc2A.46.66 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)D46 (1uc2A)H67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T54 (1uc2A)G75 because L (left) conformation "forbidden" or filtered. T0506 47 :PVSGYPY 1uc2A 68 :QGYGFPI Number of specific fragments extracted= 1 number of extra gaps= 2 total=18416 # 2asfA.46.28 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 46 :DPVSGYPYT 2asfA 29 :LRADNSPHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18417 # 1xccA.46.118 read from T0506.t2k.many.frag # found chain 1xccA in template set T0506 46 :DPVSGYPYT 1xccA 119 :KDITGLPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18418 # 1chmA.46.57 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)D46 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)Y59 Warning: unaligning (T0506)P47 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)C60 Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)R64 Warning: unaligning (T0506)Y51 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)R64 Warning: unaligning (T0506)Y53 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)A67 Warning: unaligning (T0506)T54 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)A67 T0506 48 :VS 1chmA 61 :SF T0506 52 :P 1chmA 65 :P Number of specific fragments extracted= 2 number of extra gaps= 3 total=18420 # 1ty9A.46.63 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 46 :DPVSGYPYT 1ty9A 64 :ADSQGRPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=18421 # 1b43A.46.39 read from T0506.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)D46 (1b43A)R39 because Y (epsilon') conformation "forbidden" or filtered. T0506 47 :PVSGYPYT 1b43A 40 :QKDGTPLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=18422 # 1qw9A.46.399 read from T0506.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0506)P47 (1qw9A)D401 because G (3-10) conformation "forbidden" or filtered. T0506 46 :D 1qw9A 400 :K T0506 48 :VSGYPYT 1qw9A 402 :FTDVPYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18424 # 2btoA.46.309 read from T0506.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)G50 (2btoA)G314 because Y (epsilon') conformation "forbidden" or filtered. T0506 46 :DPVS 2btoA 310 :SPME T0506 51 :YPYT 2btoA 315 :RFLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18426 # 1jfmA.46.83 read from T0506.t2k.many.frag # found chain 1jfmA in template set T0506 46 :DPVSGYPYT 1jfmA 84 :HKTNGYPHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18427 # 2pspA.46.37 read from T0506.t2k.many.frag # found chain 2pspA in template set T0506 46 :DPVSGYPYT 2pspA 38 :SQVPGVPWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=18428 # 1odhA.46.125 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)P47 (1odhA)G127 because G (3-10) conformation "forbidden" or filtered. T0506 46 :D 1odhA 126 :R T0506 48 :VSGYPYT 1odhA 128 :HGGFPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18430 # 1olzA.46.261 read from T0506.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0506)P52 (1olzA)V268 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :DPVSGY 1olzA 262 :RPDSGL T0506 53 :YT 1olzA 269 :FN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18432 # 2c8mA.46.27 read from T0506.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0506)P47 (2c8mA)Q29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2c8mA)D32 because P (beta_P) conformation "forbidden" or filtered. T0506 46 :D 2c8mA 28 :F T0506 48 :VS 2c8mA 30 :YG T0506 51 :YPYT 2c8mA 33 :KPIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=18435 # 1wthD.46.3 read from T0506.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)D46 because first residue in template chain is (1wthD)L4 Warning: unaligning (T0506)P47 (1wthD)Q5 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGYPYT 1wthD 6 :RPGYPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18436 # 1hq0A.46.72 read from T0506.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0506)P47 (1hq0A)G793 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1hq0A)G796 because S (epsilon) conformation "forbidden" or filtered. T0506 46 :D 1hq0A 792 :V T0506 48 :VS 1hq0A 794 :PN T0506 51 :YPYT 1hq0A 797 :IPTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=18439 1nd4A expands to /projects/compbio/data/pdb/1nd4.pdb.gz 1nd4A:# 1nd4A.46.69 read from T0506.t2k.many.frag # adding 1nd4A to template set # found chain 1nd4A in template set T0506 46 :DPVSGYPYT 1nd4A 70 :LATTGVPCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18440 # 1cvrA.46.262 read from T0506.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0506)P47 (1cvrA)Q264 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :D 1cvrA 263 :A T0506 48 :VSGYPYT 1cvrA 265 :KDGKPTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18442 # 1qmgA.46.194 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)G50 (1qmgA)G270 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1qmgA)A271 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 46 :DPVS 1qmgA 266 :KEVN T0506 53 :YT 1qmgA 273 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18444 # 1pmmA.46.369 read from T0506.t2k.many.frag # found chain 1pmmA in template set T0506 46 :DPVSGYPYT 1pmmA 370 :RPDEGIPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18445 # 1lshA.46.19 read from T0506.t2k.many.frag # found chain 1lshA in template set T0506 46 :DPVSGYPYT 1lshA 36 :LPEPGVNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18446 # 1ka9H.46.130 read from T0506.t2k.many.frag # found chain 1ka9H in template set Warning: unaligning (T0506)V48 (1ka9H)L133 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DP 1ka9H 131 :AP T0506 49 :SGYPYT 1ka9H 134 :TGRHFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18448 # 1s3eA.46.316 read from T0506.t2k.many.frag # found chain 1s3eA in training set T0506 46 :DPVSGYPYT 1s3eA 317 :IDGEEAPVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18449 # 2btoA.46.263 read from T0506.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)D46 (2btoA)V264 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (2btoA)H270 because G (3-10) conformation "forbidden" or filtered. T0506 47 :PVSGY 2btoA 265 :PQPSL T0506 53 :YT 2btoA 271 :FL Number of specific fragments extracted= 2 number of extra gaps= 2 total=18451 2czlA expands to /projects/compbio/data/pdb/2czl.pdb.gz 2czlA:# 2czlA.46.166 read from T0506.t2k.many.frag # adding 2czlA to template set # found chain 2czlA in template set T0506 46 :DPVSGYPYT 2czlA 167 :EERTGLPLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18452 # 1jx4A.46.20 read from T0506.t2k.many.frag # found chain 1jx4A in training set Warning: unaligning (T0506)S49 (1jx4A)K24 because P (beta_P) conformation "forbidden" or filtered. T0506 46 :DPV 1jx4A 21 :PSL T0506 50 :GYPYT 1jx4A 25 :GKPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18454 1uocA expands to /projects/compbio/data/pdb/1uoc.pdb.gz 1uocA:# 1uocA.46.32 read from T0506.t2k.many.frag # adding 1uocA to template set # found chain 1uocA in template set Warning: unaligning (T0506)P52 (1uocA)N39 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DPVSGY 1uocA 33 :QLVSQY T0506 53 :YT 1uocA 40 :HV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18456 1dpgA expands to /projects/compbio/data/pdb/1dpg.pdb.gz 1dpgA:# 1dpgA.46.324 read from T0506.t2k.many.frag # adding 1dpgA to template set # found chain 1dpgA in template set Warning: unaligning (T0506)V48 (1dpgA)W327 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DP 1dpgA 325 :PR T0506 49 :SGYPYT 1dpgA 328 :EGVPFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18458 # 1xhnA.47.42 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)T55 (1xhnA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0506 47 :PVSGYPYT 1xhnA 43 :AVRGRPFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18459 # 1vl7A.47.38 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 47 :PVSGYPYTT 1vl7A 27 :SEQGIPNGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18460 # 1xccA.47.119 read from T0506.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)S49 (1xccA)T122 because G (3-10) conformation "forbidden" or filtered. T0506 47 :PV 1xccA 120 :DI T0506 50 :GYPYTT 1xccA 123 :GLPLTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=18462 # 2asfA.47.29 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 47 :PVSGYPYTT 2asfA 30 :RADNSPHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18463 # 2fa1A.47.55 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)P47 (2fa1A)R137 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGYPYTT 2fa1A 138 :VNGVALCL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18464 # 1chmA.47.58 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)P47 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)C60 Warning: unaligning (T0506)S49 (1chmA)F62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)R64 Warning: unaligning (T0506)Y51 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)R64 Warning: unaligning (T0506)Y53 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)A67 Warning: unaligning (T0506)T54 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)A67 T0506 48 :V 1chmA 61 :S T0506 52 :P 1chmA 65 :P T0506 55 :T 1chmA 68 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=18467 # 1uc2A.47.67 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)T54 (1uc2A)G75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T55 (1uc2A)G76 because Y (epsilon') conformation "forbidden" or filtered. T0506 47 :PVSGYPY 1uc2A 68 :QGYGFPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18468 # 1jfmA.47.84 read from T0506.t2k.many.frag # found chain 1jfmA in template set T0506 47 :PVSGYPYTT 1jfmA 85 :KTNGYPHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18469 # 1qw9A.47.400 read from T0506.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0506)P47 (1qw9A)D401 because G (3-10) conformation "forbidden" or filtered. T0506 48 :VSGYPYTT 1qw9A 402 :FTDVPYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18470 # 2c8mA.47.28 read from T0506.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0506)P47 (2c8mA)Q29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2c8mA)D32 because P (beta_P) conformation "forbidden" or filtered. T0506 48 :VS 2c8mA 30 :YG T0506 51 :YPYTT 2c8mA 33 :KPILR Number of specific fragments extracted= 2 number of extra gaps= 2 total=18472 # 2btoA.47.264 read from T0506.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)P52 (2btoA)H270 because G (3-10) conformation "forbidden" or filtered. T0506 47 :PVSGY 2btoA 265 :PQPSL T0506 53 :YTT 2btoA 271 :FLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=18474 # 1nd4A.47.70 read from T0506.t2k.many.frag # found chain 1nd4A in template set T0506 47 :PVSGYPYTT 1nd4A 71 :ATTGVPCAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18475 # 2btoA.47.310 read from T0506.t2k.many.frag # found chain 2btoA in template set T0506 47 :PVSGYPYTT 2btoA 311 :PMEGRFLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=18476 # 1ty9A.47.64 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 47 :PVSGYPYTT 1ty9A 65 :DSQGRPSTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18477 # 2pspA.47.38 read from T0506.t2k.many.frag # found chain 2pspA in template set T0506 47 :PVSGYPYTT 2pspA 39 :QVPGVPWCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18478 # 1uocA.47.33 read from T0506.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)P52 (1uocA)N39 because G (3-10) conformation "forbidden" or filtered. T0506 47 :PVSGY 1uocA 34 :LVSQY T0506 53 :YTT 1uocA 40 :HVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18480 # 1m15A.47.114 read from T0506.t2k.many.frag # found chain 1m15A in training set Warning: unaligning (T0506)S49 (1m15A)G117 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1m15A)Q118 because G (3-10) conformation "forbidden" or filtered. T0506 47 :PV 1m15A 115 :PA T0506 51 :YPYTT 1m15A 119 :FIIST Number of specific fragments extracted= 2 number of extra gaps= 1 total=18482 # 1odhA.47.126 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)P47 (1odhA)G127 because G (3-10) conformation "forbidden" or filtered. T0506 48 :VSGYPYTT 1odhA 128 :HGGFPVTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18483 # 1s3eA.47.317 read from T0506.t2k.many.frag # found chain 1s3eA in training set T0506 47 :PVSGYPYTT 1s3eA 318 :DGEEAPVAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18484 # 1olzA.47.262 read from T0506.t2k.many.frag # found chain 1olzA in template set Warning: unaligning (T0506)P52 (1olzA)V268 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PVSGY 1olzA 263 :PDSGL T0506 53 :YTT 1olzA 269 :FNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18486 # 1qmgA.47.195 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 47 :PVSGY 1qmgA 267 :EVNGA T0506 53 :YTT 1qmgA 273 :INS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18488 # 1ka9H.47.131 read from T0506.t2k.many.frag # found chain 1ka9H in template set T0506 47 :PVSGYPYTT 1ka9H 132 :PLTGRHFYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18489 1zn6A expands to /projects/compbio/data/pdb/1zn6.pdb.gz 1zn6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zn6A.47.129 read from T0506.t2k.many.frag # adding 1zn6A to template set # found chain 1zn6A in template set T0506 47 :PVSGYPYTT 1zn6A 130 :RADGAPLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18490 # 1pmhX.47.39 read from T0506.t2k.many.frag # found chain 1pmhX in training set T0506 47 :PVSGYPYTT 1pmhX 40 :QRPGNKYAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18491 # 1b43A.47.40 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 47 :PVSGYPYTT 1b43A 40 :QKDGTPLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18492 # 1y4wA.47.98 read from T0506.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0506)P47 (1y4wA)K118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1y4wA)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y4wA)L124 T0506 48 :VS 1y4wA 119 :DG T0506 51 :Y 1y4wA 122 :T T0506 54 :TT 1y4wA 125 :VA Number of specific fragments extracted= 3 number of extra gaps= 3 total=18495 # 1cvrA.47.263 read from T0506.t2k.many.frag # found chain 1cvrA in template set Warning: unaligning (T0506)P47 (1cvrA)Q264 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1cvrA)D266 because L (left) conformation "forbidden" or filtered. T0506 48 :V 1cvrA 265 :K T0506 50 :GYPYTT 1cvrA 267 :GKPTGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=18497 # 1hq0A.47.73 read from T0506.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0506)G50 (1hq0A)G796 because S (epsilon) conformation "forbidden" or filtered. T0506 47 :PVS 1hq0A 793 :GPN T0506 51 :YPYTT 1hq0A 797 :IPTLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18499 # 1of8A.47.148 read from T0506.t2k.many.frag # found chain 1of8A in training set T0506 47 :PVSGYPYTT 1of8A 149 :TNIGLPIGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18500 # 1jx4A.47.21 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 47 :PVSGYPYTT 1jx4A 22 :SLKGKPVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18501 # 1xhnA.48.43 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 48 :VSGYPYTTA 1xhnA 44 :VRGRPFADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18502 # 1vl7A.48.39 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 48 :VSGYPYTTA 1vl7A 28 :EQGIPNGSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18503 # 1jfmA.48.85 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)A56 (1jfmA)V94 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGYPYTT 1jfmA 86 :TNGYPHLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=18504 # 2asfA.48.30 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18505 # 1xccA.48.120 read from T0506.t2k.many.frag # found chain 1xccA in template set T0506 48 :VSGYPYTTA 1xccA 121 :ITGLPLTCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18506 # 1uocA.48.34 read from T0506.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)P52 (1uocA)N39 because G (3-10) conformation "forbidden" or filtered. T0506 48 :VSGY 1uocA 35 :VSQY T0506 53 :YTTA 1uocA 40 :HVSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18508 # 1chmA.48.59 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)R64 Warning: unaligning (T0506)Y51 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)R64 Warning: unaligning (T0506)Y53 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)A67 Warning: unaligning (T0506)T54 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)A67 T0506 48 :VS 1chmA 61 :SF T0506 52 :P 1chmA 65 :P T0506 55 :TA 1chmA 68 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=18511 2a9dA expands to /projects/compbio/data/pdb/2a9d.pdb.gz 2a9dA:# 2a9dA.48.137 read from T0506.t2k.many.frag # adding 2a9dA to template set # found chain 2a9dA in template set Warning: unaligning (T0506)P52 (2a9dA)W236 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGY 2a9dA 232 :LQGE T0506 53 :YTTA 2a9dA 237 :HVCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18513 # 2c8mA.48.29 read from T0506.t2k.many.frag # found chain 2c8mA in template set T0506 48 :VSGYPYTTA 2c8mA 30 :YGDKPILRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18514 # 1nd4A.48.71 read from T0506.t2k.many.frag # found chain 1nd4A in template set T0506 48 :VSGYPYTTA 1nd4A 72 :TTGVPCAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18515 # 2fa1A.48.56 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)S49 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. T0506 48 :V 2fa1A 138 :V T0506 50 :GYPYTTA 2fa1A 140 :GVALCLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18517 # 1uc2A.48.68 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)T54 (1uc2A)G75 because L (left) conformation "forbidden" or filtered. T0506 48 :VSGYPY 1uc2A 69 :GYGFPI T0506 55 :TA 1uc2A 76 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18519 1ytaA expands to /projects/compbio/data/pdb/1yta.pdb.gz 1ytaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ytaA.48.18 read from T0506.t2k.many.frag # adding 1ytaA to template set # found chain 1ytaA in template set Warning: unaligning (T0506)P52 (1ytaA)R23 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGY 1ytaA 19 :PERD T0506 53 :YTTA 1ytaA 24 :IIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18521 # 2af4C.48.141 read from T0506.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)K143 Warning: unaligning (T0506)S49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)K143 Warning: unaligning (T0506)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)A145 Warning: unaligning (T0506)Y51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)A145 Warning: unaligning (T0506)P52 (2af4C)A146 because S (epsilon) conformation "forbidden" or filtered. T0506 53 :YTTA 2af4C 147 :LASA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18522 # 1ty9A.48.65 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 48 :VSGYPYTTA 1ty9A 66 :SQGRPSTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18523 # 1y4wA.48.99 read from T0506.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0506)S49 (1y4wA)G120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y4wA)L124 T0506 48 :V 1y4wA 119 :D T0506 50 :GY 1y4wA 121 :KT T0506 54 :TTA 1y4wA 125 :VAM Number of specific fragments extracted= 3 number of extra gaps= 2 total=18526 # 1m15A.48.115 read from T0506.t2k.many.frag # found chain 1m15A in training set T0506 48 :VSGYPYTTA 1m15A 116 :AGQFIISTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18527 # 1pmhX.48.40 read from T0506.t2k.many.frag # found chain 1pmhX in training set T0506 48 :VSGYPYTTA 1pmhX 41 :RPGNKYALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18528 # 1qw9A.48.401 read from T0506.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0506)A56 (1qw9A)S410 because Y (epsilon') conformation "forbidden" or filtered. T0506 48 :VSGYPYTT 1qw9A 402 :FTDVPYLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=18529 # 2btoA.48.265 read from T0506.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)P52 (2btoA)H270 because G (3-10) conformation "forbidden" or filtered. T0506 48 :VSGY 2btoA 266 :QPSL T0506 53 :YTTA 2btoA 271 :FLMC Number of specific fragments extracted= 2 number of extra gaps= 1 total=18531 # 1zn6A.48.130 read from T0506.t2k.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)S49 (1zn6A)D132 because G (3-10) conformation "forbidden" or filtered. T0506 48 :V 1zn6A 131 :A T0506 50 :GYPYTTA 1zn6A 133 :GAPLGIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18533 # 1odzA.48.160 read from T0506.t2k.many.frag # found chain 1odzA in training set T0506 48 :VSGYPYTTA 1odzA 198 :EQGRLIPVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18534 # 1qmgA.48.196 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 48 :VSGY 1qmgA 268 :VNGA T0506 53 :YTTA 1qmgA 273 :INSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18536 # 1odhA.48.127 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)S49 (1odhA)G129 because L (left) conformation "forbidden" or filtered. T0506 48 :V 1odhA 128 :H T0506 50 :GYPYTTA 1odhA 130 :GFPVTNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18538 1bdfA expands to /projects/compbio/data/pdb/1bdf.pdb.gz 1bdfA:# 1bdfA.48.47 read from T0506.t2k.many.frag # adding 1bdfA to template set # found chain 1bdfA in template set Warning: unaligning (T0506)Y53 (1bdfA)G53 because S (epsilon) conformation "forbidden" or filtered. T0506 48 :VSGYP 1bdfA 48 :LSSMP T0506 54 :TTA 1bdfA 54 :CAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18540 1vpsA expands to /projects/compbio/data/pdb/1vps.pdb.gz 1vpsA:# 1vpsA.48.60 read from T0506.t2k.many.frag # adding 1vpsA to template set # found chain 1vpsA in template set T0506 48 :VSGYPYTTA 1vpsA 92 :NNTLPTWSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18541 # 2furA.48.40 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)S49 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 48 :V 2furA 40 :D T0506 50 :GYPYTTA 2furA 42 :GIPYAIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18543 # 1r9lA.48.177 read from T0506.t2k.many.frag # found chain 1r9lA in training set Warning: unaligning (T0506)T55 (1r9lA)Y185 because Y (epsilon') conformation "forbidden" or filtered. T0506 48 :VSGYPYT 1r9lA 178 :KEGKPVF T0506 56 :A 1r9lA 186 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=18545 # 1ctt.48.205 read from T0506.t2k.many.frag # found chain 1ctt in template set Warning: unaligning (T0506)Y53 (1ctt)S211 because Y (epsilon') conformation "forbidden" or filtered. T0506 48 :VSGYP 1ctt 206 :YSKSP T0506 54 :TTA 1ctt 212 :GVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18547 # 1dqzA.48.135 read from T0506.t2k.many.frag # found chain 1dqzA in training set T0506 48 :VSGYPYTTA 1dqzA 138 :PQQFPYAAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18548 # 1xhnA.49.44 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A56 (1xhnA)V52 because P (beta_P) conformation "forbidden" or filtered. T0506 49 :SGYPYTT 1xhnA 45 :RGRPFAD T0506 57 :T 1xhnA 53 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=18550 # 1vl7A.49.40 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 49 :SGYPYTTAT 1vl7A 29 :QGIPNGSYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18551 # 1jfmA.49.86 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)Y51 (1jfmA)Y89 because T (delta_L) conformation "forbidden" or filtered. T0506 49 :SG 1jfmA 87 :NG T0506 52 :PYTTAT 1jfmA 90 :PHLQVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18553 # 1uocA.49.35 read from T0506.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)P52 (1uocA)N39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1uocA)I43 because E (beta_S) conformation "forbidden" or filtered. T0506 49 :SGY 1uocA 36 :SQY T0506 53 :YTT 1uocA 40 :HVS T0506 57 :T 1uocA 44 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=18556 # 1nd4A.49.72 read from T0506.t2k.many.frag # found chain 1nd4A in template set T0506 49 :SGYPYTTAT 1nd4A 73 :TGVPCAAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18557 # 2a9dA.49.138 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)P52 (2a9dA)W236 because E (beta_S) conformation "forbidden" or filtered. T0506 49 :SGY 2a9dA 233 :QGE T0506 53 :YTTAT 2a9dA 237 :HVCFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18559 # 1ytaA.49.19 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)P52 (1ytaA)R23 because E (beta_S) conformation "forbidden" or filtered. T0506 49 :SGY 1ytaA 20 :ERD T0506 53 :YTTAT 1ytaA 24 :IIEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18561 # 1chmA.49.60 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)S49 (1chmA)F62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)R64 Warning: unaligning (T0506)Y51 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)R64 Warning: unaligning (T0506)Y53 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)A67 Warning: unaligning (T0506)T54 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)A67 T0506 52 :P 1chmA 65 :P T0506 55 :TAT 1chmA 68 :LVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=18563 # 2asfA.49.31 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18564 # 1xccA.49.121 read from T0506.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 T0506 49 :SGYPYTTA 1xccA 122 :TGLPLTCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18565 # 1rtqA.49.57 read from T0506.t2k.many.frag # found chain 1rtqA in training set T0506 49 :SGYPYTTAT 1rtqA 58 :ASLPNASVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18566 # 1pmhX.49.41 read from T0506.t2k.many.frag # found chain 1pmhX in training set T0506 49 :SGYPYTTAT 1pmhX 42 :PGNKYALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18567 # 1uc2A.49.69 read from T0506.t2k.many.frag # found chain 1uc2A in template set T0506 49 :SGYPYTTAT 1uc2A 70 :YGFPIGGVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18568 # 1ty9A.49.66 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 49 :SGYPYTTAT 1ty9A 67 :QGRPSTRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18569 # 2fa1A.49.57 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)S49 (2fa1A)N139 because L (left) conformation "forbidden" or filtered. T0506 50 :GYPYTTAT 2fa1A 140 :GVALCLID Number of specific fragments extracted= 1 number of extra gaps= 1 total=18570 # 2af4C.49.142 read from T0506.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0506)S49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)K143 Warning: unaligning (T0506)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)A145 Warning: unaligning (T0506)Y51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)A145 T0506 52 :PYTTAT 2af4C 146 :ALASAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=18571 # 1qmgA.49.197 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 49 :SGY 1qmgA 269 :NGA T0506 53 :YTTAT 1qmgA 273 :INSSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18573 # 2c8mA.49.30 read from T0506.t2k.many.frag # found chain 2c8mA in template set Warning: unaligning (T0506)G50 (2c8mA)D32 because P (beta_P) conformation "forbidden" or filtered. T0506 49 :S 2c8mA 31 :G T0506 51 :YPYTTAT 2c8mA 33 :KPILRFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18575 1wvhA expands to /projects/compbio/data/pdb/1wvh.pdb.gz 1wvhA:# 1wvhA.49.33 read from T0506.t2k.many.frag # adding 1wvhA to template set # found chain 1wvhA in template set Warning: unaligning (T0506)G50 (1wvhA)P1639 because C (cis) conformation "forbidden" or filtered. T0506 49 :S 1wvhA 1638 :D T0506 51 :YPYTTAT 1wvhA 1640 :TPTATIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18577 # 1odhA.49.128 read from T0506.t2k.many.frag # found chain 1odhA in template set Warning: unaligning (T0506)S49 (1odhA)G129 because L (left) conformation "forbidden" or filtered. T0506 50 :GYPYTTAT 1odhA 130 :GFPVTNFW Number of specific fragments extracted= 1 number of extra gaps= 1 total=18578 1ryp2 expands to /projects/compbio/data/pdb/1ryp.pdb.gz 1ryp2:# 1ryp2.49.106 read from T0506.t2k.many.frag # adding 1ryp2 to template set # found chain 1ryp2 in template set Warning: unaligning (T0506)G50 (1ryp2)N100 because D (zeta) conformation "forbidden" or filtered. T0506 49 :S 1ryp2 99 :M T0506 51 :YPYTTAT 1ryp2 101 :PLWNAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=18580 # 2furA.49.41 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)S49 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 50 :GYPYTTAT 2furA 42 :GIPYAIPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=18581 # 1yge.49.424 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)P52 (1yge)T428 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1yge)R432 because E (beta_S) conformation "forbidden" or filtered. T0506 49 :SGY 1yge 425 :SAK T0506 53 :YTT 1yge 429 :YAT T0506 57 :T 1yge 433 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=18584 # 1bdfA.49.48 read from T0506.t2k.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)G50 (1bdfA)S50 because G (3-10) conformation "forbidden" or filtered. T0506 49 :S 1bdfA 49 :S T0506 51 :YPYTTAT 1bdfA 51 :MPGCAVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18586 # 1ctt.49.206 read from T0506.t2k.many.frag # found chain 1ctt in template set Warning: unaligning (T0506)T54 (1ctt)G212 because Y (epsilon') conformation "forbidden" or filtered. T0506 49 :SGYPY 1ctt 207 :SKSPS T0506 55 :TAT 1ctt 213 :VAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18588 1umwA expands to /projects/compbio/data/pdb/1umw.pdb.gz 1umwA:# 1umwA.49.37 read from T0506.t2k.many.frag # adding 1umwA to template set # found chain 1umwA in template set T0506 49 :SGYPYTTAT 1umwA 404 :ACIPIFWVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18589 # 1zn6A.49.131 read from T0506.t2k.many.frag # found chain 1zn6A in template set T0506 49 :SGYPYTTAT 1zn6A 132 :DGAPLGIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18590 # 1y4wA.49.100 read from T0506.t2k.many.frag # found chain 1y4wA in training set Warning: unaligning (T0506)S49 (1y4wA)G120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1y4wA)K121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y4wA)L124 Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y4wA)L124 T0506 51 :Y 1y4wA 122 :T T0506 54 :TTAT 1y4wA 125 :VAMY Number of specific fragments extracted= 2 number of extra gaps= 2 total=18592 1zx5A expands to /projects/compbio/data/pdb/1zx5.pdb.gz 1zx5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 104, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 468, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 470, because occupancy 0.500 <= existing 0.500 in 1zx5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 513, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 515, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 517, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 519, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 521, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 523, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 525, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 527, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1487, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1491, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1493, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1495, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1497, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1499, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1501, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 1503, because occupancy 0.500 <= existing 0.500 in 1zx5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2181, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2183, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2185, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2187, because occupancy 0.500 <= existing 0.500 in 1zx5A Skipped atom 2189, because occupancy 0.500 <= existing 0.500 in 1zx5A # 1zx5A.49.80 read from T0506.t2k.many.frag # adding 1zx5A to template set # found chain 1zx5A in template set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zx5A)L88 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zx5A)L88 T0506 49 :SGYPYTT 1zx5A 80 :SKFPILV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18593 1z2wA expands to /projects/compbio/data/pdb/1z2w.pdb.gz 1z2wA:# 1z2wA.49.76 read from T0506.t2k.many.frag # adding 1z2wA to template set # found chain 1z2wA in template set T0506 49 :SGYPYTTAT 1z2wA 67 :LNYPEQKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18594 # 1vl7A.50.41 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 50 :GYPYTTATN 1vl7A 30 :GIPNGSYAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18595 # 1xhnA.50.45 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 50 :GYPYTTATN 1xhnA 46 :GRPFADVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18596 # 1nd4A.50.73 read from T0506.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)Y53 (1nd4A)C77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYP 1nd4A 74 :GVP T0506 54 :TTAT 1nd4A 78 :AAVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=18598 # 1uocA.50.36 read from T0506.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)P52 (1uocA)N39 because G (3-10) conformation "forbidden" or filtered. T0506 50 :GY 1uocA 37 :QY T0506 53 :YTTATN 1uocA 40 :HVSIST Number of specific fragments extracted= 2 number of extra gaps= 1 total=18600 # 1jfmA.50.87 read from T0506.t2k.many.frag # found chain 1jfmA in template set T0506 50 :GYPYTTATN 1jfmA 88 :GYPHLQVTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=18601 # 1ytaA.50.20 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)P52 (1ytaA)R23 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GY 1ytaA 21 :RD T0506 53 :YTTATN 1ytaA 24 :IIEIAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18603 # 1yge.50.425 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)P52 (1yge)T428 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1yge)R432 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GY 1yge 426 :AK T0506 53 :YTT 1yge 429 :YAT T0506 57 :TN 1yge 433 :TI Number of specific fragments extracted= 3 number of extra gaps= 2 total=18606 # 2a9dA.50.139 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)P52 (2a9dA)W236 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GY 2a9dA 234 :GE T0506 53 :YTTATN 2a9dA 237 :HVCFEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18608 # 1ryp2.50.107 read from T0506.t2k.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)G50 (1ryp2)N100 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1ryp2)I106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1ryp2)V108 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :YPYTT 1ryp2 101 :PLWNA T0506 57 :T 1ryp2 107 :I Number of specific fragments extracted= 2 number of extra gaps= 3 total=18610 # 1wvhA.50.34 read from T0506.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G50 (1wvhA)P1639 because C (cis) conformation "forbidden" or filtered. T0506 51 :YPYTTATN 1wvhA 1640 :TPTATIVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=18611 # 1umwA.50.38 read from T0506.t2k.many.frag # found chain 1umwA in template set T0506 50 :GYPYTTATN 1umwA 405 :CIPIFWVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18612 1iruK expands to /projects/compbio/data/pdb/1iru.pdb.gz 1iruK:# 1iruK.50.95 read from T0506.t2k.many.frag # adding 1iruK to template set # found chain 1iruK in template set Warning: unaligning (T0506)G50 (1iruK)T96 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1iruK)Y98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1iruK 97 :P T0506 53 :YTT 1iruK 99 :HVN T0506 57 :TN 1iruK 103 :LL Number of specific fragments extracted= 3 number of extra gaps= 3 total=18615 # 1rtqA.50.58 read from T0506.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0506)G50 (1rtqA)S59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y53 (1rtqA)N62 because T (delta_L) conformation "forbidden" or filtered. T0506 51 :YP 1rtqA 60 :LP T0506 54 :TTATN 1rtqA 63 :ASVKQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=18617 # 2asfA.50.32 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 50 :GYPYTTA 2asfA 33 :NSPHVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18618 2a8eA expands to /projects/compbio/data/pdb/2a8e.pdb.gz 2a8eA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a8eA.50.65 read from T0506.t2k.many.frag # adding 2a8eA to template set # found chain 2a8eA in template set Warning: unaligning (T0506)G50 (2a8eA)N66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (2a8eA)W72 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTT 2a8eA 67 :PPADS T0506 57 :TN 2a8eA 73 :VA Number of specific fragments extracted= 2 number of extra gaps= 2 total=18620 # 1pmhX.50.42 read from T0506.t2k.many.frag # found chain 1pmhX in training set T0506 50 :GYPYTTATN 1pmhX 43 :GNKYALRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18621 # 1uc2A.50.70 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)T54 (1uc2A)G75 because L (left) conformation "forbidden" or filtered. T0506 50 :GYPY 1uc2A 71 :GFPI T0506 55 :TATN 1uc2A 76 :GVAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18623 1iow expands to /projects/compbio/data/pdb/1iow.pdb.gz 1iow:Warning: there is no chain 1iow will retry with 1iowA # 1iow.50.248 read from T0506.t2k.many.frag # adding 1iow to template set # found chain 1iow in template set Warning: unaligning (T0506)P52 (1iow)K251 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y53 (1iow)G252 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)T55 (1iow)G254 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GY 1iow 249 :GC T0506 54 :T 1iow 253 :W T0506 56 :ATN 1iow 255 :RID Number of specific fragments extracted= 3 number of extra gaps= 2 total=18626 2akaA expands to /projects/compbio/data/pdb/2aka.pdb.gz 2akaA:Skipped atom 968, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 970, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 972, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1771, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1773, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1867, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1869, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1871, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1873, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1875, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1877, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1879, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1915, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 1917, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2071, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2073, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2436, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2438, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2440, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2442, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2444, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2503, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2505, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2507, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2509, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2511, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2590, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2592, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2651, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2653, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2655, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2657, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2659, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2661, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 2663, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3314, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3316, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3972, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3974, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3976, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3978, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 3980, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4359, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4361, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4363, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4365, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4704, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4706, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4708, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4710, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4712, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4748, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4750, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4752, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4754, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4756, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4820, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4822, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4824, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4826, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4828, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4893, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4895, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4897, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4899, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4947, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4949, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 4951, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5547, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5549, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5551, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5553, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5555, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5557, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5559, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5926, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5928, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5930, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 5932, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6155, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6157, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6159, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6161, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6163, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6165, because occupancy 0.500 <= existing 0.500 in 2akaA Skipped atom 6167, because occupancy 0.500 <= existing 0.500 in 2akaA # 2akaA.50.246 read from T0506.t2k.many.frag # adding 2akaA to template set # found chain 2akaA in template set Warning: unaligning (T0506)G50 (2akaA)S236 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (2akaA)R238 because G (3-10) conformation "forbidden" or filtered. T0506 51 :Y 2akaA 237 :S T0506 53 :YTTATN 2akaA 239 :FGKFIE Number of specific fragments extracted= 2 number of extra gaps= 2 total=18628 # 1chmA.50.61 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)R64 Warning: unaligning (T0506)Y51 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)R64 Warning: unaligning (T0506)Y53 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)A67 Warning: unaligning (T0506)T54 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)A67 T0506 52 :P 1chmA 65 :P T0506 55 :TATN 1chmA 68 :LVVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=18630 # 1xccA.50.122 read from T0506.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 T0506 50 :GYPYTTA 1xccA 123 :GLPLTCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=18631 # 1qmgA.50.198 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)G50 (1qmgA)G270 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1qmgA 271 :A T0506 53 :YTTATN 1qmgA 273 :INSSFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=18633 # 1bdfA.50.49 read from T0506.t2k.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)G50 (1bdfA)S50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y53 (1bdfA)G53 because S (epsilon) conformation "forbidden" or filtered. T0506 51 :YP 1bdfA 51 :MP T0506 54 :TTATN 1bdfA 54 :CAVTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=18635 # 2af4C.50.143 read from T0506.t2k.many.frag # found chain 2af4C in template set Warning: unaligning (T0506)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2af4C)A145 Warning: unaligning (T0506)Y51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2af4C)A145 T0506 52 :PYTTATN 2af4C 146 :ALASAFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=18636 1u7nA expands to /projects/compbio/data/pdb/1u7n.pdb.gz 1u7nA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1160, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1284, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1292, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1294, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1296, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1298, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1307, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1309, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1311, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1313, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1315, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1317, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1319, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1321, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1323, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1610, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1612, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1614, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1618, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1820, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1822, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1824, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1826, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1828, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2013, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2015, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2017, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2019, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2021, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2023, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2025, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2027, because occupancy 0.500 <= existing 0.500 in 1u7nA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2366, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2368, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2370, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2372, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2374, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2376, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2378, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2380, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2382, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2429, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2431, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2433, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2435, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2437, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2439, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2441, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2443, because occupancy 0.500 <= existing 0.500 in 1u7nA Skipped atom 2445, because occupancy 0.500 <= existing 0.500 in 1u7nA # 1u7nA.50.118 read from T0506.t2k.many.frag # adding 1u7nA to template set # found chain 1u7nA in template set T0506 50 :GYPYTTATN 1u7nA 116 :NVERPGLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18637 1xruA expands to /projects/compbio/data/pdb/1xru.pdb.gz 1xruA:Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1435, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1437, because occupancy 0.500 <= existing 0.500 in 1xruA Skipped atom 1439, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1953, because occupancy 0.500 <= existing 0.500 in 1xruA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xruA.50.123 read from T0506.t2k.many.frag # adding 1xruA to template set # found chain 1xruA in template set Warning: unaligning (T0506)G50 (1xruA)G121 because H (helix) conformation "forbidden" or filtered. T0506 51 :YPYTTATN 1xruA 122 :TPAKFYYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=18638 # 2fa1A.50.58 read from T0506.t2k.many.frag # found chain 2fa1A in template set T0506 50 :GYPYTTATN 2fa1A 140 :GVALCLIDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=18639 # 1vlyA.50.77 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)G50 (1vlyA)K66 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1vlyA)G67 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlyA)N72 T0506 52 :PYT 1vlyA 68 :KMW T0506 57 :TN 1vlyA 73 :LR Number of specific fragments extracted= 2 number of extra gaps= 2 total=18641 1xipA expands to /projects/compbio/data/pdb/1xip.pdb.gz 1xipA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xipA.50.33 read from T0506.t2k.many.frag # adding 1xipA to template set # found chain 1xipA in template set T0506 50 :GYPYTTATN 1xipA 33 :KLPFASLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18642 1ri7A expands to /projects/compbio/data/pdb/1ri7.pdb.gz 1ri7A:# 1ri7A.50.83 read from T0506.t2k.many.frag # adding 1ri7A to template set # found chain 1ri7A in template set Warning: unaligning (T0506)P52 (1ri7A)S86 because G (3-10) conformation "forbidden" or filtered. T0506 50 :GY 1ri7A 84 :GY T0506 53 :YTTATN 1ri7A 87 :MLAFIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18644 # 1vl7A.51.42 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T55 (1vl7A)S35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1vl7A)P38 because P (beta_P) conformation "forbidden" or filtered. T0506 51 :YPYT 1vl7A 31 :IPNG T0506 56 :AT 1vl7A 36 :YA T0506 59 :I 1vl7A 39 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=18647 # 1xhnA.51.46 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 51 :YPYTTATNI 1xhnA 47 :RPFADVLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18648 # 1yge.51.426 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)P52 (1yge)T428 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1yge)I434 because P (beta_P) conformation "forbidden" or filtered. T0506 51 :Y 1yge 427 :K T0506 53 :YTTAT 1yge 429 :YATRT T0506 59 :I 1yge 435 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=18651 # 1uocA.51.37 read from T0506.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)P52 (1uocA)N39 because G (3-10) conformation "forbidden" or filtered. T0506 51 :Y 1uocA 38 :Y T0506 53 :YTTATNI 1uocA 40 :HVSISTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18653 # 1umwA.51.39 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)I59 (1umwA)W414 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTTATN 1umwA 406 :IPIFWVSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18654 # 1iruK.51.96 read from T0506.t2k.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)P52 (1iruK)Y98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1iruK 97 :P T0506 53 :YTT 1iruK 99 :HVN T0506 57 :TNI 1iruK 103 :LLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=18657 # 1wvhA.51.35 read from T0506.t2k.many.frag # found chain 1wvhA in template set T0506 51 :YPYTTATNI 1wvhA 1640 :TPTATIVHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18658 # 2a8eA.51.66 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)T54 (2a8eA)D70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (2a8eA)W72 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPY 2a8eA 67 :PPA T0506 55 :T 2a8eA 71 :S T0506 57 :TNI 2a8eA 73 :VAF Number of specific fragments extracted= 3 number of extra gaps= 2 total=18661 # 1ytaA.51.21 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)P52 (1ytaA)R23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (1ytaA)L30 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1ytaA 22 :D T0506 53 :YTTATN 1ytaA 24 :IIEIAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=18663 # 1ryp2.51.108 read from T0506.t2k.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)N58 (1ryp2)V108 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :YPYTTAT 1ryp2 101 :PLWNAII T0506 59 :I 1ryp2 109 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=18665 # 1nd4A.51.74 read from T0506.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTTAT 1nd4A 75 :VPCAAVL T0506 59 :I 1nd4A 83 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18667 # 1iow.51.249 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)P52 (1iow)K251 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y53 (1iow)G252 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1iow)D257 because P (beta_P) conformation "forbidden" or filtered. T0506 51 :Y 1iow 250 :C T0506 54 :TTAT 1iow 253 :WGRI T0506 59 :I 1iow 258 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=18670 # 2a9dA.51.140 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)P52 (2a9dA)W236 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :Y 2a9dA 235 :E T0506 53 :YTTATNI 2a9dA 237 :HVCFEGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18672 # 1jfmA.51.88 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)Y51 (1jfmA)Y89 because T (delta_L) conformation "forbidden" or filtered. T0506 52 :PYTTATNI 1jfmA 90 :PHLQVTMI Number of specific fragments extracted= 1 number of extra gaps= 1 total=18673 # 2asfA.51.33 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A56 (2asfA)A39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 51 :YPYTT 2asfA 34 :SPHVV T0506 59 :I 2asfA 42 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=18675 # 2akaA.51.247 read from T0506.t2k.many.frag # found chain 2akaA in template set Warning: unaligning (T0506)P52 (2akaA)R238 because G (3-10) conformation "forbidden" or filtered. T0506 51 :Y 2akaA 237 :S T0506 53 :YTTATNI 2akaA 239 :FGKFIEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18677 # 1rtqA.51.59 read from T0506.t2k.many.frag # found chain 1rtqA in training set Warning: unaligning (T0506)Y53 (1rtqA)N62 because T (delta_L) conformation "forbidden" or filtered. T0506 51 :YP 1rtqA 60 :LP T0506 54 :TTATNI 1rtqA 63 :ASVKQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18679 # 1u7nA.51.119 read from T0506.t2k.many.frag # found chain 1u7nA in template set T0506 51 :YPYTTATNI 1u7nA 117 :VERPGLMST Number of specific fragments extracted= 1 number of extra gaps= 0 total=18680 # 1uc2A.51.71 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)N58 (1uc2A)A79 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :YPYTTAT 1uc2A 72 :FPIGGVA T0506 59 :I 1uc2A 80 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=18682 # 1bdfA.51.50 read from T0506.t2k.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)Y53 (1bdfA)G53 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1bdfA)V56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 (1bdfA)T57 because G (3-10) conformation "forbidden" or filtered. T0506 51 :YP 1bdfA 51 :MP T0506 54 :TT 1bdfA 54 :CA T0506 58 :NI 1bdfA 58 :EV Number of specific fragments extracted= 3 number of extra gaps= 2 total=18685 # 1vlyA.51.78 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)T55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlyA)N72 T0506 51 :YPYT 1vlyA 67 :GKMW T0506 57 :TNI 1vlyA 73 :LRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18687 2be1A expands to /projects/compbio/data/pdb/2be1.pdb.gz 2be1A:# 2be1A.51.242 read from T0506.t2k.many.frag # adding 2be1A to template set # found chain 2be1A in template set Warning: unaligning (T0506)N58 (2be1A)D360 because P (beta_P) conformation "forbidden" or filtered. T0506 51 :YPYTTAT 2be1A 353 :GIIVGLF T0506 59 :I 2be1A 361 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18689 # 1xipA.51.34 read from T0506.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)T54 (1xipA)A37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1xipA)N41 because G (3-10) conformation "forbidden" or filtered. T0506 51 :YPY 1xipA 34 :LPF T0506 55 :TAT 1xipA 38 :SLQ T0506 59 :I 1xipA 42 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=18692 1txvA expands to /projects/compbio/data/pdb/1txv.pdb.gz 1txvA:# 1txvA.51.16 read from T0506.t2k.many.frag # adding 1txvA to template set # found chain 1txvA in template set Warning: unaligning (T0506)P52 (1txvA)Q18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1txvA)D24 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1txvA 17 :S T0506 53 :YTTAT 1txvA 19 :FGFSL T0506 59 :I 1txvA 25 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=18695 # 1qmgA.51.199 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1qmgA 271 :A T0506 53 :YTTATNI 1qmgA 273 :INSSFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18697 1kcfA expands to /projects/compbio/data/pdb/1kcf.pdb.gz 1kcfA:# 1kcfA.51.48 read from T0506.t2k.many.frag # adding 1kcfA to template set # found chain 1kcfA in template set Warning: unaligning (T0506)P52 (1kcfA)K50 because G (3-10) conformation "forbidden" or filtered. T0506 51 :Y 1kcfA 49 :I T0506 53 :YTTATNI 1kcfA 51 :NFSYCFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18699 2cy7A expands to /projects/compbio/data/pdb/2cy7.pdb.gz 2cy7A:# 2cy7A.51.222 read from T0506.t2k.many.frag # adding 2cy7A to template set # found chain 2cy7A in template set Warning: unaligning (T0506)T57 (2cy7A)I226 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (2cy7A)L228 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTTA 2cy7A 220 :RPLVLL T0506 58 :N 2cy7A 227 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=18701 # 1xccA.51.123 read from T0506.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 T0506 51 :YPYTTA 1xccA 124 :LPLTCR T0506 59 :I 1xccA 132 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=18703 # 1ikpA.51.109 read from T0506.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)P52 (1ikpA)S111 because G (3-10) conformation "forbidden" or filtered. T0506 51 :Y 1ikpA 110 :P T0506 53 :YTTATNI 1ikpA 112 :NIKVFIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18705 # 3sil.51.29 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0506 51 :YPYTT 3sil 33 :TKYFR T0506 57 :TNI 3sil 39 :PAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=18707 # 1vl7A.52.43 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 52 :PYTTATNIG 1vl7A 32 :PNGSYAPFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18708 # 1xhnA.52.47 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 52 :PYTTATNIG 1xhnA 48 :PFADVLSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18709 # 1yge.52.427 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)P52 (1yge)T428 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1yge)I434 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1yge)F436 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTAT 1yge 429 :YATRT T0506 59 :I 1yge 435 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=18711 # 1umwA.52.40 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)N58 (1umwA)K413 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTTAT 1umwA 407 :PIFWVS T0506 59 :IG 1umwA 414 :WV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18713 # 1iruK.52.97 read from T0506.t2k.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)P52 (1iruK)Y98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTT 1iruK 99 :HVN T0506 57 :TNIG 1iruK 103 :LLAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=18715 # 1ryp2.52.109 read from T0506.t2k.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)G60 (1ryp2)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 52 :PYTTATNI 1ryp2 102 :LWNAIIVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18716 # 2a8eA.52.67 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)Y53 (2a8eA)A69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2a8eA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0506 52 :P 2a8eA 68 :P T0506 54 :TTATNI 2a8eA 70 :DSWVAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=18718 # 1uocA.52.38 read from T0506.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)P52 (1uocA)N39 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1uocA)F47 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1uocA 40 :HVSISTE Number of specific fragments extracted= 1 number of extra gaps= 2 total=18719 # 1iow.52.250 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)P52 (1iow)K251 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1iow)D257 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTTAT 1iow 252 :GWGRI T0506 59 :IG 1iow 258 :VM Number of specific fragments extracted= 2 number of extra gaps= 2 total=18721 # 1ytaA.52.22 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)P52 (1ytaA)R23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1ytaA)T29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (1ytaA)L30 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1ytaA)V31 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTAT 1ytaA 24 :IIEIA Number of specific fragments extracted= 1 number of extra gaps= 2 total=18722 # 2asfA.52.34 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A56 (2asfA)A39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)G60 (2asfA)T43 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTT 2asfA 35 :PHVV T0506 59 :I 2asfA 42 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=18724 # 1wvhA.52.36 read from T0506.t2k.many.frag # found chain 1wvhA in template set T0506 52 :PYTTATNIG 1wvhA 1641 :PTATIVHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18725 # 1nd4A.52.75 read from T0506.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1nd4A)V84 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTTAT 1nd4A 76 :PCAAVL T0506 59 :I 1nd4A 83 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=18727 # 2a9dA.52.141 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)P52 (2a9dA)W236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2a9dA)D244 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTTATNI 2a9dA 237 :HVCFEGL Number of specific fragments extracted= 1 number of extra gaps= 2 total=18728 # 2akaA.52.248 read from T0506.t2k.many.frag # found chain 2akaA in template set Warning: unaligning (T0506)P52 (2akaA)R238 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (2akaA)E244 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2akaA)Q246 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTAT 2akaA 239 :FGKFI T0506 59 :I 2akaA 245 :I Number of specific fragments extracted= 2 number of extra gaps= 3 total=18730 # 1u7nA.52.120 read from T0506.t2k.many.frag # found chain 1u7nA in template set T0506 52 :PYTTATNIG 1u7nA 118 :ERPGLMSTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18731 # 2be1A.52.243 read from T0506.t2k.many.frag # found chain 2be1A in template set T0506 52 :PYTTATNIG 2be1A 354 :IIVGLFDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18732 # 1xipA.52.35 read from T0506.t2k.many.frag # found chain 1xipA in template set T0506 52 :PYTTATNIG 1xipA 35 :PFASLQNLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18733 # 1bdfA.52.51 read from T0506.t2k.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)Y53 (1bdfA)G53 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1bdfA)E60 because D (zeta) conformation "forbidden" or filtered. T0506 52 :P 1bdfA 52 :P T0506 54 :TTATNI 1bdfA 54 :CAVTEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=18735 # 1jfmA.52.89 read from T0506.t2k.many.frag # found chain 1jfmA in template set T0506 52 :PYTTATNIG 1jfmA 90 :PHLQVTMIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18736 # 1vlyA.52.79 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)T55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlyA)N72 T0506 52 :PYT 1vlyA 68 :KMW T0506 57 :TNIG 1vlyA 73 :LRLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18738 # 1txvA.52.17 read from T0506.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)P52 (1txvA)Q18 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T54 (1txvA)G20 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1txvA)D24 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :Y 1txvA 19 :F T0506 55 :TAT 1txvA 21 :FSL T0506 59 :IG 1txvA 25 :FH Number of specific fragments extracted= 3 number of extra gaps= 3 total=18741 # 1kcfA.52.49 read from T0506.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)P52 (1kcfA)K50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1kcfA)S58 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1kcfA 51 :NFSYCFA Number of specific fragments extracted= 1 number of extra gaps= 2 total=18742 # 2cy7A.52.223 read from T0506.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0506)G60 (2cy7A)R229 because D (zeta) conformation "forbidden" or filtered. T0506 52 :PYTTATNI 2cy7A 221 :PLVLLIPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=18743 # 1uc2A.52.72 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)T54 (1uc2A)G75 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T55 (1uc2A)G76 because Y (epsilon') conformation "forbidden" or filtered. T0506 52 :PY 1uc2A 73 :PI T0506 56 :ATNIG 1uc2A 77 :VAAFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18745 # 3sil.52.30 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)T55 (3sil)R37 because Y (epsilon') conformation "forbidden" or filtered. T0506 52 :PYT 3sil 34 :KYF T0506 56 :ATNIG 3sil 38 :IPAMC Number of specific fragments extracted= 2 number of extra gaps= 1 total=18747 # 1rtqA.52.60 read from T0506.t2k.many.frag # found chain 1rtqA in training set T0506 52 :PYTTATNIG 1rtqA 61 :PNASVKQVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18748 # 1qmgA.52.200 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)P52 (1qmgA)G272 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTATNIG 1qmgA 273 :INSSFAVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=18749 1vqoM expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoM:# 1vqoM.52.113 read from T0506.t2k.many.frag # adding 1vqoM to template set # found chain 1vqoM in template set Warning: unaligning (T0506)P52 (1vqoM)R113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1vqoM)S117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 (1vqoM)Y118 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTT 1vqoM 114 :VLN T0506 58 :NIG 1vqoM 119 :SVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=18751 # 1ikpA.52.110 read from T0506.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)P52 (1ikpA)S111 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 (1ikpA)F116 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTA 1ikpA 112 :NIKV T0506 58 :NIG 1ikpA 117 :IHE Number of specific fragments extracted= 2 number of extra gaps= 2 total=18753 # 1vl7A.53.44 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 53 :YTTATNIGI 1vl7A 33 :NGSYAPFVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18754 # 1xhnA.53.48 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)N58 (1xhnA)S54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1xhnA)S56 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTAT 1xhnA 49 :FADVL T0506 59 :I 1xhnA 55 :L T0506 61 :I 1xhnA 57 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=18757 # 1yge.53.428 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)N58 (1yge)I434 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTTAT 1yge 429 :YATRT T0506 59 :IGI 1yge 435 :LFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18759 # 1iruK.53.98 read from T0506.t2k.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTT 1iruK 99 :HVN T0506 57 :TNIGI 1iruK 103 :LLAGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18761 # 2a8eA.53.68 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)A56 (2a8eA)W72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (2a8eA)A74 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTT 2a8eA 69 :ADS T0506 57 :T 2a8eA 73 :V T0506 59 :IGI 2a8eA 75 :FAN Number of specific fragments extracted= 3 number of extra gaps= 2 total=18764 # 1umwA.53.41 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)I59 (1umwA)W414 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1umwA)V415 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATN 1umwA 408 :IFWVSK T0506 61 :I 1umwA 416 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=18766 # 1ryp2.53.110 read from T0506.t2k.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)T54 (1ryp2)N104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1ryp2)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :Y 1ryp2 103 :W T0506 55 :TATNI 1ryp2 105 :AIIVA T0506 61 :I 1ryp2 111 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=18769 # 2asfA.53.35 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)G60 (2asfA)T43 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTA 2asfA 36 :HVVA T0506 59 :I 2asfA 42 :F T0506 61 :I 2asfA 44 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=18772 # 1iow.53.251 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)N58 (1iow)D257 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTTAT 1iow 252 :GWGRI T0506 59 :IGI 1iow 258 :VML Number of specific fragments extracted= 2 number of extra gaps= 1 total=18774 # 1ytaA.53.23 read from T0506.t2k.many.frag # found chain 1ytaA in template set T0506 53 :YTTATNIGI 1ytaA 24 :IIEIATLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18775 # 2a9dA.53.142 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 53 :YTTATNIGI 2a9dA 237 :HVCFEGLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18776 # 3sil.53.31 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0506 53 :YTT 3sil 35 :YFR T0506 57 :TNIGI 3sil 39 :PAMCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18778 # 1uocA.53.39 read from T0506.t2k.many.frag # found chain 1uocA in template set T0506 53 :YTTATNIGI 1uocA 40 :HVSISTEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18779 # 2be1A.53.244 read from T0506.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0506)A56 (2be1A)L358 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (2be1A)D360 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTT 2be1A 355 :IVG T0506 57 :T 2be1A 359 :F T0506 59 :IGI 2be1A 361 :VFN Number of specific fragments extracted= 3 number of extra gaps= 2 total=18782 1uh4A expands to /projects/compbio/data/pdb/1uh4.pdb.gz 1uh4A:Skipped atom 2140, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2142, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2259, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2261, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2263, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 2265, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3014, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3016, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3145, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3147, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3149, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3151, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3153, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3462, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3464, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3466, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3468, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3837, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 3839, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4937, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4939, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4941, because occupancy 0.500 <= existing 0.500 in 1uh4A Skipped atom 4943, because occupancy 0.500 <= existing 0.500 in 1uh4A # 1uh4A.53.552 read from T0506.t2k.many.frag # adding 1uh4A to template set # found chain 1uh4A in template set Warning: unaligning (T0506)Y53 (1uh4A)T553 because G (3-10) conformation "forbidden" or filtered. T0506 54 :TTATNIGI 1uh4A 554 :GSFMTLIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18783 # 2akaA.53.249 read from T0506.t2k.many.frag # found chain 2akaA in template set T0506 53 :YTTATNIGI 2akaA 239 :FGKFIEIQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=18784 # 1u7nA.53.121 read from T0506.t2k.many.frag # found chain 1u7nA in template set T0506 53 :YTTATNIGI 1u7nA 119 :RPGLMSTLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18785 1utcA expands to /projects/compbio/data/pdb/1utc.pdb.gz 1utcA:# 1utcA.53.149 read from T0506.t2k.many.frag # adding 1utcA to template set # found chain 1utcA in template set Warning: unaligning (T0506)Y53 (1utcA)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1utcA)N155 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TTAT 1utcA 151 :CQII T0506 59 :IGI 1utcA 156 :YRT Number of specific fragments extracted= 2 number of extra gaps= 2 total=18787 # 1pjxA.53.115 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (1pjxA)C122 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTAT 1pjxA 116 :MQGCN T0506 60 :GI 1pjxA 123 :AF Number of specific fragments extracted= 2 number of extra gaps= 1 total=18789 # 1txvA.53.18 read from T0506.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)T57 (1txvA)L23 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1txvA)D24 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTA 1txvA 19 :FGFS T0506 59 :IGI 1txvA 25 :FHK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18791 # 1wvhA.53.37 read from T0506.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)A56 (1wvhA)I1645 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTT 1wvhA 1642 :TAT T0506 57 :TNIGI 1wvhA 1646 :VHFKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=18793 # 1bdfA.53.52 read from T0506.t2k.many.frag # found chain 1bdfA in template set T0506 53 :YTTATNIGI 1bdfA 53 :GCAVTEVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=18794 # 1xipA.53.36 read from T0506.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)T54 (1xipA)A37 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :Y 1xipA 36 :F T0506 55 :TATNIGI 1xipA 38 :SLQNLDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18796 # 1kcfA.53.50 read from T0506.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)G60 (1kcfA)S58 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1kcfA 51 :NFSYCFA T0506 61 :I 1kcfA 59 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=18798 # 1nd4A.53.76 read from T0506.t2k.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTAT 1nd4A 77 :CAAVL T0506 59 :IGI 1nd4A 83 :VVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18800 # 1jfmA.53.90 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)N58 (1jfmA)M96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1jfmA)Y98 because N (gamma') conformation "forbidden" or filtered. T0506 53 :YTTAT 1jfmA 91 :HLQVT T0506 59 :I 1jfmA 97 :I T0506 61 :I 1jfmA 99 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=18803 # 2cy7A.53.224 read from T0506.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0506)G60 (2cy7A)R229 because D (zeta) conformation "forbidden" or filtered. T0506 53 :YTTATNI 2cy7A 222 :LVLLIPL T0506 61 :I 2cy7A 230 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=18805 # 1vlyA.53.80 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)T55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlyA)N72 Warning: unaligning (T0506)G60 (1vlyA)F76 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YT 1vlyA 69 :MW T0506 57 :TNI 1vlyA 73 :LRL T0506 61 :I 1vlyA 77 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=18808 # 1uc2A.53.73 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)G60 (1uc2A)D81 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1uc2A 74 :IGGVAAF T0506 61 :I 1uc2A 82 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=18810 # 1qopB.53.278 read from T0506.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)Y53 (1qopB)F280 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1qopB)M287 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTATNI 1qopB 281 :GMKAPM T0506 61 :I 1qopB 288 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=18812 # 1vl7A.54.45 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 54 :TTATNIGIE 1vl7A 34 :GSYAPFVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18813 # 1xhnA.54.49 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)T55 (1xhnA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :T 1xhnA 50 :A T0506 56 :ATNIGIE 1xhnA 52 :VLSLSDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18815 # 1yge.54.429 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)N58 (1yge)I434 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1yge)R438 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTAT 1yge 430 :ATRT T0506 59 :IGI 1yge 435 :LFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=18817 # 1iruK.54.99 read from T0506.t2k.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TT 1iruK 100 :VN T0506 57 :TNIGIE 1iruK 103 :LLAGYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18819 # 2a8eA.54.69 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)A56 (2a8eA)W72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2a8eA)A76 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TT 2a8eA 70 :DS T0506 57 :TNI 2a8eA 73 :VAF T0506 61 :IE 2a8eA 77 :NS Number of specific fragments extracted= 3 number of extra gaps= 2 total=18822 # 1ytaA.54.24 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)G60 (1ytaA)V31 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TTATNI 1ytaA 25 :IEIATL T0506 61 :IE 1ytaA 32 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18824 # 2asfA.54.36 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 54 :TTA 2asfA 37 :VVA T0506 59 :IGIE 2asfA 42 :FTFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18826 # 1umwA.54.42 read from T0506.t2k.many.frag # found chain 1umwA in template set T0506 54 :TTATNIGIE 1umwA 409 :FWVSKWVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=18827 # 1ryp2.54.111 read from T0506.t2k.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)E62 (1ryp2)Q112 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTATNIGI 1ryp2 104 :NAIIVAGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=18828 # 1iow.54.252 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)T54 (1iow)W253 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :TATNIGIE 1iow 254 :GRIDVMLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=18829 # 3sil.54.32 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0506 54 :TT 3sil 36 :FR T0506 57 :TNIGIE 3sil 39 :PAMCTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=18831 # 1pjxA.54.116 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1pjxA)A123 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TTAT 1pjxA 117 :QGCN T0506 59 :I 1pjxA 122 :C T0506 61 :IE 1pjxA 124 :FD Number of specific fragments extracted= 3 number of extra gaps= 2 total=18834 # 1utcA.54.150 read from T0506.t2k.many.frag # found chain 1utcA in template set T0506 54 :TTATNIGIE 1utcA 151 :CQIINYRTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=18835 # 1uh4A.54.553 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)A56 (1uh4A)F556 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TT 1uh4A 554 :GS T0506 57 :TNIGIE 1uh4A 557 :MTLITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18837 # 2a9dA.54.143 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)G60 (2a9dA)D244 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2a9dA)D246 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTATNI 2a9dA 238 :VCFEGL T0506 61 :I 2a9dA 245 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=18839 # 1txvA.54.19 read from T0506.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)T54 (1txvA)G20 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1txvA)D24 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :TAT 1txvA 21 :FSL T0506 59 :IGIE 1txvA 25 :FHKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=18841 # 2be1A.54.245 read from T0506.t2k.many.frag # found chain 2be1A in template set T0506 54 :TTATNIGIE 2be1A 356 :VGLFDVFND Number of specific fragments extracted= 1 number of extra gaps= 0 total=18842 # 2akaA.54.250 read from T0506.t2k.many.frag # found chain 2akaA in template set T0506 54 :TTATNIGIE 2akaA 240 :GKFIEIQFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18843 # 2cy7A.54.225 read from T0506.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0506)G60 (2cy7A)R229 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2cy7A)G231 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TTATNI 2cy7A 223 :VLLIPL T0506 61 :I 2cy7A 230 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=18845 # 1u7nA.54.122 read from T0506.t2k.many.frag # found chain 1u7nA in template set T0506 54 :TTATNIGIE 1u7nA 120 :PGLMSTLPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18846 # 1qopB.54.279 read from T0506.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)N58 (1qopB)P285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1qopB)M287 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1qopB)T289 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTAT 1qopB 281 :GMKA T0506 59 :I 1qopB 286 :M T0506 61 :I 1qopB 288 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=18849 # 1uocA.54.40 read from T0506.t2k.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uocA)S60 T0506 54 :TTATNIGI 1uocA 41 :VSISTEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18850 # 1jfmA.54.91 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)G60 (1jfmA)Y98 because N (gamma') conformation "forbidden" or filtered. T0506 54 :TTATNI 1jfmA 92 :LQVTMI T0506 61 :IE 1jfmA 99 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=18852 # 1wvhA.54.38 read from T0506.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G60 (1wvhA)K1649 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1wvhA)S1651 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TTATNI 1wvhA 1643 :ATIVHF T0506 61 :I 1wvhA 1650 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=18854 # 1vlyA.54.81 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)T55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlyA)N72 Warning: unaligning (T0506)G60 (1vlyA)F76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1vlyA)D78 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :T 1vlyA 70 :W T0506 57 :TNI 1vlyA 73 :LRL T0506 61 :I 1vlyA 77 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=18857 # 1w0pA.54.403 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 54 :TTATNIGIE 1w0pA 404 :KYVVTLSID Number of specific fragments extracted= 1 number of extra gaps= 0 total=18858 # 1bdfA.54.53 read from T0506.t2k.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)A56 (1bdfA)V56 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TT 1bdfA 54 :CA T0506 57 :TNIGIE 1bdfA 57 :TEVEID Number of specific fragments extracted= 2 number of extra gaps= 1 total=18860 # 1kcfA.54.51 read from T0506.t2k.many.frag # found chain 1kcfA in template set T0506 54 :TTATNIGIE 1kcfA 52 :FSYCFASQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18861 # 1xipA.54.37 read from T0506.t2k.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)G60 (1xipA)D43 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TTATNI 1xipA 37 :ASLQNL T0506 61 :IE 1xipA 44 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18863 # 1ikpA.54.112 read from T0506.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)T57 (1ikpA)F116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1ikpA)E119 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTA 1ikpA 113 :IKV T0506 58 :NI 1ikpA 117 :IH T0506 61 :IE 1ikpA 120 :LN Number of specific fragments extracted= 3 number of extra gaps= 2 total=18866 # 1vl7A.55.46 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G60 (1vl7A)V40 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TATNI 1vl7A 35 :SYAPF T0506 61 :IEP 1vl7A 41 :IDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18868 # 1xhnA.55.50 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)E62 (1xhnA)G58 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :TATNIGI 1xhnA 51 :DVLSLSD T0506 63 :P 1xhnA 59 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=18870 # 1ytaA.55.25 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)G60 (1ytaA)V31 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TATNI 1ytaA 26 :EIATL T0506 61 :IEP 1ytaA 32 :TDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18872 # 1yge.55.430 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)N58 (1yge)I434 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TAT 1yge 431 :TRT T0506 59 :IGIEP 1yge 435 :LFLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18874 # 1utcA.55.151 read from T0506.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)E62 (1utcA)D159 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TATNIGI 1utcA 152 :QIINYRT T0506 63 :P 1utcA 160 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=18876 # 1pjxA.55.117 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (1pjxA)C122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1pjxA)A123 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TAT 1pjxA 118 :GCN T0506 61 :IEP 1pjxA 124 :FDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=18878 # 1uh4A.55.554 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)G60 (1uh4A)I560 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TATNI 1uh4A 555 :SFMTL T0506 61 :IEP 1uh4A 561 :TDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18880 # 1iruK.55.100 read from T0506.t2k.many.frag # found chain 1iruK in template set T0506 55 :TATNIGIEP 1iruK 101 :NLLLAGYDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18881 # 1iow.55.253 read from T0506.t2k.many.frag # found chain 1iow in template set T0506 55 :TATNIGIEP 1iow 254 :GRIDVMLDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18882 # 3sil.55.33 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0506 55 :T 3sil 37 :R T0506 57 :TNIGIEP 3sil 39 :PAMCTTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18884 # 2a8eA.55.70 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)G60 (2a8eA)A76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2a8eA)S78 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TATNI 2a8eA 71 :SWVAF T0506 61 :I 2a8eA 77 :N T0506 63 :P 2a8eA 79 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=18887 # 1ryp2.55.112 read from T0506.t2k.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)A56 (1ryp2)I106 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :T 1ryp2 105 :A T0506 57 :TNIGIEP 1ryp2 107 :IVAGVQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18889 # 2asfA.55.37 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 55 :TA 2asfA 38 :VA T0506 59 :IGIEP 2asfA 42 :FTFDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=18891 # 1umwA.55.43 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)G60 (1umwA)V415 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (1umwA)S418 because G (3-10) conformation "forbidden" or filtered. T0506 55 :TATNI 1umwA 410 :WVSKW T0506 61 :IE 1umwA 416 :DY Number of specific fragments extracted= 2 number of extra gaps= 2 total=18893 # 2a9dA.55.144 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 55 :TATNIGIEP 2a9dA 239 :CFEGLDADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=18894 # 1qopB.55.280 read from T0506.t2k.many.frag # found chain 1qopB in training set T0506 55 :TATNIGIEP 1qopB 282 :MKAPMMQTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18895 # 2akaA.55.251 read from T0506.t2k.many.frag # found chain 2akaA in template set T0506 55 :TATNIGIEP 2akaA 241 :KFIEIQFNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=18896 # 2cy7A.55.226 read from T0506.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0506)N58 (2cy7A)P227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2cy7A)R229 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)I61 (2cy7A)L230 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2cy7A)G231 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :TAT 2cy7A 224 :LLI T0506 59 :I 2cy7A 228 :L T0506 63 :P 2cy7A 232 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=18899 # 1txvA.55.20 read from T0506.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)N58 (1txvA)D24 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :TAT 1txvA 21 :FSL T0506 59 :IGIEP 1txvA 25 :FHKDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18901 # 1wvhA.55.39 read from T0506.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G60 (1wvhA)K1649 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TATNI 1wvhA 1644 :TIVHF T0506 61 :IEP 1wvhA 1650 :VSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=18903 # 1jfmA.55.92 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)E62 (1jfmA)Q100 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TATNIGI 1jfmA 93 :QVTMIYP T0506 63 :P 1jfmA 101 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=18905 # 2be1A.55.246 read from T0506.t2k.many.frag # found chain 2be1A in template set Warning: unaligning (T0506)G60 (2be1A)F362 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TATNI 2be1A 357 :GLFDV T0506 61 :IEP 2be1A 363 :NDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=18907 # 1w0pA.55.404 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 55 :TATNIGIEP 1w0pA 405 :YVVTLSIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18908 # 1qmgA.55.203 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)P63 (1qmgA)V283 because G (3-10) conformation "forbidden" or filtered. T0506 55 :TATNIGIE 1qmgA 275 :SSFAVHQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=18909 # 1vlyA.55.82 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)T55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlyA)N72 Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlyA)N72 Warning: unaligning (T0506)P63 (1vlyA)G79 because S (epsilon) conformation "forbidden" or filtered. T0506 57 :TNIGIE 1vlyA 73 :LRLFRD Number of specific fragments extracted= 1 number of extra gaps= 2 total=18910 # 1ikpA.55.113 read from T0506.t2k.many.frag # found chain 1ikpA in training set T0506 55 :TATNIGIEP 1ikpA 114 :KVFIHELNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18911 # 1me4A.55.163 read from T0506.t2k.many.frag # found chain 1me4A in training set Warning: unaligning (T0506)G60 (1me4A)Y166 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :TATNI 1me4A 161 :VLLVG T0506 61 :IEP 1me4A 167 :NDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=18913 # 1h2wA.55.125 read from T0506.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)G60 (1h2wA)A131 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TATNI 1h2wA 126 :ALRGY T0506 61 :IEP 1h2wA 132 :FSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18915 # 1kcfA.55.52 read from T0506.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)I59 (1kcfA)A57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1kcfA)N60 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TATN 1kcfA 53 :SYCF T0506 60 :GI 1kcfA 58 :SQ T0506 63 :P 1kcfA 61 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=18918 # 1u7nA.55.123 read from T0506.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0506)N58 (1u7nA)S124 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :TAT 1u7nA 121 :GLM T0506 59 :IGIEP 1u7nA 125 :TLPVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=18920 # 1vl7A.56.47 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 56 :ATNIGIEPD 1vl7A 36 :YAPFVIDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=18921 # 1ytaA.56.26 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)G60 (1ytaA)V31 because E (beta_S) conformation "forbidden" or filtered. T0506 56 :ATNI 1ytaA 27 :IATL T0506 61 :IEPD 1ytaA 32 :TDAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=18923 # 1yge.56.431 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)E62 (1yge)R438 because P (beta_P) conformation "forbidden" or filtered. T0506 56 :ATNIGI 1yge 432 :RTILFL T0506 63 :PD 1yge 439 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=18925 # 1utcA.56.152 read from T0506.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)N58 (1utcA)N155 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :AT 1utcA 153 :II T0506 59 :IGIEPD 1utcA 156 :YRTDAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18927 # 1qopB.56.281 read from T0506.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)T57 (1qopB)A284 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :A 1qopB 283 :K T0506 58 :NIGIEPD 1qopB 285 :PMMQTAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=18929 # 1uh4A.56.555 read from T0506.t2k.many.frag # found chain 1uh4A in template set T0506 56 :ATNIGIEPD 1uh4A 556 :FMTLITDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=18930 # 1iow.56.254 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)N58 (1iow)D257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1iow)M259 because E (beta_S) conformation "forbidden" or filtered. T0506 56 :AT 1iow 255 :RI T0506 59 :I 1iow 258 :V T0506 61 :IEPD 1iow 260 :LDSD Number of specific fragments extracted= 3 number of extra gaps= 2 total=18933 # 1ryp2.56.113 read from T0506.t2k.many.frag # found chain 1ryp2 in template set T0506 56 :ATNIGIEPD 1ryp2 106 :IIVAGVQSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=18934 # 1pjxA.56.118 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :AT 1pjxA 119 :CN T0506 59 :IGIEPD 1pjxA 122 :CAFDYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=18936 # 2a9dA.56.145 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 56 :ATNIGIEPD 2a9dA 240 :FEGLDADPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18937 # 1iruK.56.101 read from T0506.t2k.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 1iruK 103 :LLAGYDEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=18938 # 3sil.56.34 read from T0506.t2k.many.frag # found chain 3sil in training set T0506 56 :ATNIGIEPD 3sil 38 :IPAMCTTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=18939 # 2akaA.56.252 read from T0506.t2k.many.frag # found chain 2akaA in template set Warning: unaligning (T0506)A56 (2akaA)F242 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 2akaA 243 :IEIQFNSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=18940 # 1xhnA.56.51 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A56 (1xhnA)V52 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 1xhnA 53 :LSLSDGPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18941 # 2a8eA.56.71 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)N58 (2a8eA)A74 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2a8eA)S78 because E (beta_S) conformation "forbidden" or filtered. T0506 56 :AT 2a8eA 72 :WV T0506 59 :IGI 2a8eA 75 :FAN T0506 63 :PD 2a8eA 79 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=18944 # 1jfmA.56.93 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)G60 (1jfmA)Y98 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1jfmA)Q100 because P (beta_P) conformation "forbidden" or filtered. T0506 56 :ATNI 1jfmA 94 :VTMI T0506 61 :I 1jfmA 99 :P T0506 63 :PD 1jfmA 101 :SQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=18947 # 1txvA.56.21 read from T0506.t2k.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)N58 (1txvA)D24 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :AT 1txvA 22 :SL T0506 59 :IGIEPD 1txvA 25 :FHKDSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=18949 # 1umwA.56.44 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)A56 (1umwA)V411 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1umwA)V415 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (1umwA)S418 because G (3-10) conformation "forbidden" or filtered. T0506 57 :TNI 1umwA 412 :SKW T0506 61 :IE 1umwA 416 :DY T0506 64 :D 1umwA 419 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=18952 1h5wA expands to /projects/compbio/data/pdb/1h5w.pdb.gz 1h5wA:# 1h5wA.56.61 read from T0506.t2k.many.frag # adding 1h5wA to template set # found chain 1h5wA in template set T0506 56 :ATNIGIEPD 1h5wA 62 :YVGFYKDPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=18953 # 2asfA.56.38 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A56 (2asfA)A39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 59 :IGIEPD 2asfA 42 :FTFDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=18954 # 1wvhA.56.40 read from T0506.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G60 (1wvhA)K1649 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1wvhA)S1651 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :ATNI 1wvhA 1645 :IVHF T0506 61 :I 1wvhA 1650 :V T0506 63 :PD 1wvhA 1652 :AQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=18957 # 1oq1A.56.79 read from T0506.t2k.many.frag # found chain 1oq1A in training set T0506 56 :ATNIGIEPD 1oq1A 77 :LFFAAAGIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=18958 # 1kcfA.56.53 read from T0506.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)I59 (1kcfA)A57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1kcfA)S58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1kcfA)N60 because P (beta_P) conformation "forbidden" or filtered. T0506 56 :ATN 1kcfA 54 :YCF T0506 61 :I 1kcfA 59 :Q T0506 63 :PD 1kcfA 61 :ED Number of specific fragments extracted= 3 number of extra gaps= 2 total=18961 # 1w0pA.56.405 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 56 :ATNIGIEPD 1w0pA 406 :VVTLSIDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=18962 # 1ikpA.56.114 read from T0506.t2k.many.frag # found chain 1ikpA in training set T0506 56 :ATNIGIEPD 1ikpA 115 :VFIHELNAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18963 # 1h2wA.56.126 read from T0506.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)G60 (1h2wA)A131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1h2wA)S133 because P (beta_P) conformation "forbidden" or filtered. T0506 56 :ATNI 1h2wA 127 :LRGY T0506 61 :I 1h2wA 132 :F T0506 63 :PD 1h2wA 134 :ED Number of specific fragments extracted= 3 number of extra gaps= 2 total=18966 # 1t3tA.56.81 read from T0506.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)D64 (1t3tA)G82 because T (delta_L) conformation "forbidden" or filtered. T0506 56 :ATNIGIEP 1t3tA 74 :LLLVTPRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=18967 # 1ylhA.56.141 read from T0506.t2k.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)T57 (1ylhA)G123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1ylhA)G126 because S (epsilon) conformation "forbidden" or filtered. T0506 56 :A 1ylhA 122 :E T0506 58 :NI 1ylhA 124 :YC T0506 61 :IEPD 1ylhA 127 :ASEK Number of specific fragments extracted= 3 number of extra gaps= 2 total=18970 # 1me4A.56.164 read from T0506.t2k.many.frag # found chain 1me4A in training set Warning: unaligning (T0506)G60 (1me4A)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1me4A)A167C because P (beta_P) conformation "forbidden" or filtered. T0506 56 :ATNI 1me4A 162 :LLVG T0506 61 :IEP 1me4A 167 :NDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=18972 # 2cy7A.56.227 read from T0506.t2k.many.frag # found chain 2cy7A in template set Warning: unaligning (T0506)T57 (2cy7A)I226 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (2cy7A)P227 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2cy7A)R229 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2cy7A)G231 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :A 2cy7A 225 :L T0506 59 :I 2cy7A 228 :L T0506 61 :I 2cy7A 230 :L T0506 63 :PD 2cy7A 232 :LT Number of specific fragments extracted= 4 number of extra gaps= 3 total=18976 # 1vl7A.57.48 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)E62 (1vl7A)D42 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNIGI 1vl7A 37 :APFVI T0506 63 :PDG 1vl7A 43 :DAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=18978 # 1utcA.57.153 read from T0506.t2k.many.frag # found chain 1utcA in template set T0506 57 :TNIGIEPDG 1utcA 154 :INYRTDAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=18979 # 1iow.57.255 read from T0506.t2k.many.frag # found chain 1iow in template set T0506 57 :TNIGIEPDG 1iow 256 :IDVMLDSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18980 # 1ytaA.57.27 read from T0506.t2k.many.frag # found chain 1ytaA in template set T0506 57 :TNIGIEPDG 1ytaA 28 :ATLVTDANL Number of specific fragments extracted= 1 number of extra gaps= 0 total=18981 # 1yge.57.432 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)N58 (1yge)I434 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :T 1yge 433 :T T0506 59 :IGIEPDG 1yge 435 :LFLREDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18983 # 1qopB.57.282 read from T0506.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)G60 (1qopB)M287 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNI 1qopB 284 :APM T0506 61 :IEPDG 1qopB 288 :QTADG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18985 # 1pjxA.57.119 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :T 1pjxA 120 :N T0506 59 :IGIEPDG 1pjxA 122 :CAFDYEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18987 # 1iruK.57.102 read from T0506.t2k.many.frag # found chain 1iruK in template set T0506 57 :TNIGIEPDG 1iruK 103 :LLAGYDEHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=18988 # 2a9dA.57.146 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 57 :TNIGIEPDG 2a9dA 241 :EGLDADPGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18989 # 1uh4A.57.556 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)G65 (1uh4A)N565 because G (3-10) conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 1uh4A 557 :MTLITDDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=18990 # 1h5wA.57.62 read from T0506.t2k.many.frag # found chain 1h5wA in template set Warning: unaligning (T0506)N58 (1h5wA)G64 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :T 1h5wA 63 :V T0506 59 :IGIEPDG 1h5wA 65 :FYKDPVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=18992 # 1ryp2.57.114 read from T0506.t2k.many.frag # found chain 1ryp2 in template set T0506 57 :TNIGIEPDG 1ryp2 107 :IVAGVQSNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18993 # 2akaA.57.253 read from T0506.t2k.many.frag # found chain 2akaA in template set Warning: unaligning (T0506)N58 (2akaA)E244 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :T 2akaA 243 :I T0506 59 :IGIEPDG 2akaA 245 :IQFNSAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=18995 # 3sil.57.35 read from T0506.t2k.many.frag # found chain 3sil in training set T0506 57 :TNIGIEPDG 3sil 39 :PAMCTTSKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=18996 # 1xccA.57.129 read from T0506.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 Warning: unaligning (T0506)G60 (1xccA)F133 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 1xccA 132 :F T0506 61 :IEPDG 1xccA 134 :ISPEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=18998 # 1umwA.57.45 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)I59 (1umwA)W414 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (1umwA)S418 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1umwA)K420 because G (3-10) conformation "forbidden" or filtered. T0506 57 :TN 1umwA 412 :SK T0506 60 :GIE 1umwA 415 :VDY T0506 64 :D 1umwA 419 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=19001 # 1w0pA.57.406 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 57 :TNIGIEPDG 1w0pA 407 :VTLSIDESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19002 # 1txvA.57.22 read from T0506.t2k.many.frag # found chain 1txvA in template set T0506 57 :TNIGIEPDG 1txvA 23 :LDFHKDSHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19003 # 1ikpA.57.115 read from T0506.t2k.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)T57 (1ikpA)F116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1ikpA)I117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1ikpA)E119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1ikpA)N121 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 1ikpA 118 :H T0506 61 :I 1ikpA 120 :L T0506 63 :PDG 1ikpA 122 :AGN Number of specific fragments extracted= 3 number of extra gaps= 3 total=19006 # 1jfmA.57.94 read from T0506.t2k.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)G60 (1jfmA)Y98 because N (gamma') conformation "forbidden" or filtered. T0506 57 :TNI 1jfmA 95 :TMI T0506 61 :IEPDG 1jfmA 99 :PQSQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19008 1nw1A expands to /projects/compbio/data/pdb/1nw1.pdb.gz 1nw1A:# 1nw1A.57.89 read from T0506.t2k.many.frag # adding 1nw1A to template set # found chain 1nw1A in template set Warning: unaligning (T0506)N58 (1nw1A)L91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1nw1A)R93 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :T 1nw1A 90 :F T0506 59 :I 1nw1A 92 :C T0506 61 :IEPDG 1nw1A 94 :LSEVY Number of specific fragments extracted= 3 number of extra gaps= 2 total=19011 # 1kcfA.57.54 read from T0506.t2k.many.frag # found chain 1kcfA in template set T0506 57 :TNIGIEPDG 1kcfA 55 :CFASQNEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19012 # 2asfA.57.39 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I59 (2asfA)F42 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2asfA)T43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (2asfA)T48 because G (3-10) conformation "forbidden" or filtered. T0506 61 :IEPD 2asfA 44 :FDPK Number of specific fragments extracted= 1 number of extra gaps= 2 total=19013 1zpsA expands to /projects/compbio/data/pdb/1zps.pdb.gz 1zpsA:# 1zpsA.57.79 read from T0506.t2k.many.frag # adding 1zpsA to template set # found chain 1zpsA in template set Warning: unaligning (T0506)N58 (1zpsA)D81 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :T 1zpsA 80 :K T0506 59 :IGIEPDG 1zpsA 82 :VLVDCDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19015 # 1l6rA.57.69 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)T57 (1l6rA)G67 because T (delta_L) conformation "forbidden" or filtered. T0506 58 :NIGIEPDG 1l6rA 68 :GIMFDNDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19016 1lm8V expands to /projects/compbio/data/pdb/1lm8.pdb.gz 1lm8V:# 1lm8V.57.31 read from T0506.t2k.many.frag # adding 1lm8V to template set # found chain 1lm8V in template set Warning: unaligning (T0506)N58 (1lm8V)P86 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :T 1lm8V 85 :L T0506 59 :IGIEPDG 1lm8V 87 :VWLNFDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19018 # 1mj5A.57.20 read from T0506.t2k.many.frag # found chain 1mj5A in training set Warning: unaligning (T0506)G60 (1mj5A)I24 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNI 1mj5A 21 :MAY T0506 61 :IEPDG 1mj5A 25 :DEGTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19020 # 1h2wA.57.127 read from T0506.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)T57 (1h2wA)R128 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1h2wA)G129 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1h2wA)A131 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1h2wA 130 :Y T0506 61 :IEPDG 1h2wA 132 :FSEDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19022 # 1me4A.57.165 read from T0506.t2k.many.frag # found chain 1me4A in training set Warning: unaligning (T0506)G60 (1me4A)Y166 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :TNI 1me4A 163 :LVG T0506 61 :IEPDG 1me4A 167 :NDSAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19024 # 1t3tA.57.82 read from T0506.t2k.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)D64 (1t3tA)G82 because T (delta_L) conformation "forbidden" or filtered. T0506 57 :TNIGIEP 1t3tA 75 :LLVTPRP T0506 65 :G 1t3tA 83 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=19026 # 1vl7A.58.49 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)N58 (1vl7A)P38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1vl7A)V40 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1vl7A 39 :F T0506 61 :IEPDGT 1vl7A 41 :IDDAKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19028 # 1utcA.58.154 read from T0506.t2k.many.frag # found chain 1utcA in template set T0506 58 :NIGIEPDGT 1utcA 155 :NYRTDAKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19029 # 2a9dA.58.147 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 58 :NIGIEPDGT 2a9dA 242 :GLDADPGGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19030 # 1iow.58.256 read from T0506.t2k.many.frag # found chain 1iow in template set T0506 58 :NIGIEPDGT 1iow 257 :DVMLDSDGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19031 # 1qopB.58.283 read from T0506.t2k.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)G60 (1qopB)M287 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NI 1qopB 285 :PM T0506 61 :IEPDGT 1qopB 288 :QTADGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19033 # 2akaA.58.254 read from T0506.t2k.many.frag # found chain 2akaA in template set Warning: unaligning (T0506)E62 (2akaA)N248 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NIGI 2akaA 244 :EIQF T0506 63 :PDGT 2akaA 249 :SAGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19035 # 1iruK.58.103 read from T0506.t2k.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)G65 (1iruK)E111 because G (3-10) conformation "forbidden" or filtered. T0506 58 :NIGIEPD 1iruK 104 :LAGYDEH T0506 66 :T 1iruK 112 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=19037 # 1ytaA.58.28 read from T0506.t2k.many.frag # found chain 1ytaA in template set Warning: unaligning (T0506)E62 (1ytaA)D33 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NIGI 1ytaA 29 :TLVT T0506 63 :PDGT 1ytaA 34 :ANLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19039 # 1yge.58.433 read from T0506.t2k.many.frag # found chain 1yge in training set T0506 58 :NIGIEPDGT 1yge 434 :ILFLREDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19040 # 1kcfA.58.55 read from T0506.t2k.many.frag # found chain 1kcfA in template set T0506 58 :NIGIEPDGT 1kcfA 56 :FASQNEDSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19041 # 1l6rA.58.70 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)G60 (1l6rA)M70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1l6rA)D72 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NI 1l6rA 68 :GI T0506 61 :I 1l6rA 71 :F T0506 63 :PDGT 1l6rA 73 :NDGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19044 # 1pjxA.58.120 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1pjxA 122 :CAFDYEGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19045 # 1h5wA.58.63 read from T0506.t2k.many.frag # found chain 1h5wA in template set Warning: unaligning (T0506)N58 (1h5wA)G64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T66 (1h5wA)S72 because S (epsilon) conformation "forbidden" or filtered. T0506 59 :IGIEPDG 1h5wA 65 :FYKDPVI Number of specific fragments extracted= 1 number of extra gaps= 2 total=19046 # 1ryp2.58.115 read from T0506.t2k.many.frag # found chain 1ryp2 in template set T0506 58 :NIGIEPDGT 1ryp2 108 :VAGVQSNGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19047 # 1uteA.58.225 read from T0506.t2k.many.frag # found chain 1uteA in training set T0506 58 :NIGIEPDGT 1uteA 226 :QYLQDENGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19048 # 1xccA.58.130 read from T0506.t2k.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 Warning: unaligning (T0506)E62 (1xccA)S135 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :IGI 1xccA 132 :FFI T0506 63 :PDGT 1xccA 136 :PEKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19050 # 3sil.58.36 read from T0506.t2k.many.frag # found chain 3sil in training set T0506 58 :NIGIEPDGT 3sil 40 :AMCTTSKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19051 # 1uh4A.58.557 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)N58 (1uh4A)T558 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T66 (1uh4A)K566 because L (left) conformation "forbidden" or filtered. T0506 59 :IGIEPDG 1uh4A 559 :LITDDTN Number of specific fragments extracted= 1 number of extra gaps= 2 total=19052 1khbA expands to /projects/compbio/data/pdb/1khb.pdb.gz 1khbA:# 1khbA.58.316 read from T0506.t2k.many.frag # adding 1khbA to template set # found chain 1khbA in template set T0506 58 :NIGIEPDGT 1khbA 314 :WMKFDAQGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19053 1vjjA expands to /projects/compbio/data/pdb/1vjj.pdb.gz 1vjjA:Skipped atom 2461, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2463, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2465, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2467, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2469, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2471, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2473, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2475, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2477, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2479, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2481, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2483, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2485, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2487, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2489, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2491, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2493, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2495, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2497, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2499, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2501, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2503, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2505, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2507, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2509, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2511, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2513, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2515, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2517, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2519, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2521, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2523, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2525, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2527, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2529, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2531, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2533, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2535, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2537, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2539, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 2541, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3272, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3276, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3278, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3280, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3282, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3284, because occupancy 0.500 <= existing 0.500 in 1vjjA Skipped atom 3286, because occupancy 0.500 <= existing 0.500 in 1vjjA # 1vjjA.58.572 read from T0506.t2k.many.frag # adding 1vjjA to template set # found chain 1vjjA in template set T0506 58 :NIGIEPDGT 1vjjA 573 :AVCKVPDES Number of specific fragments extracted= 1 number of extra gaps= 0 total=19054 1h3qA expands to /projects/compbio/data/pdb/1h3q.pdb.gz 1h3qA:# 1h3qA.58.6 read from T0506.t2k.many.frag # adding 1h3qA to template set # found chain 1h3qA in template set T0506 58 :NIGIEPDGT 1h3qA 7 :FVIVGHHDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19055 2f8aA expands to /projects/compbio/data/pdb/2f8a.pdb.gz 2f8aA:Skipped atom 64, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 365, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 369, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 371, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 375, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 377, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 797, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 801, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 999, because occupancy 0.250 <= existing 0.250 in 2f8aA Skipped atom 1004, because occupancy 0.250 <= existing 0.250 in 2f8aA Skipped atom 1007, because occupancy 0.250 <= existing 0.250 in 2f8aA Skipped atom 1010, because occupancy 0.250 <= existing 0.250 in 2f8aA Skipped atom 1103, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1107, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1109, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1344, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1348, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1350, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1352, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1354, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1356, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1358, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1360, because occupancy 0.300 <= existing 0.700 in 2f8aA Skipped atom 1414, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1418, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1420, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1422, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1424, because occupancy 0.500 <= existing 0.500 in 2f8aA Skipped atom 1426, because occupancy 0.500 <= existing 0.500 in 2f8aA # 2f8aA.58.175 read from T0506.t2k.many.frag # adding 2f8aA to template set # found chain 2f8aA in template set T0506 58 :NIGIEPDGT 2f8aA 164 :KFLVGPDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19056 1vzyA expands to /projects/compbio/data/pdb/1vzy.pdb.gz 1vzyA:# 1vzyA.58.159 read from T0506.t2k.many.frag # adding 1vzyA to template set # found chain 1vzyA in template set T0506 58 :NIGIEPDGT 1vzyA 160 :GVLVNPDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19057 # 1zpsA.58.80 read from T0506.t2k.many.frag # found chain 1zpsA in template set T0506 58 :NIGIEPDGT 1zpsA 81 :DVLVDCDGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19058 # 1hxn.58.21 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)N58 (1hxn)A237 because Y (epsilon') conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1hxn 238 :MVSDNHGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19059 # 1umwA.58.46 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)P63 (1umwA)S418 because G (3-10) conformation "forbidden" or filtered. T0506 58 :NIGIE 1umwA 413 :KWVDY T0506 64 :DGT 1umwA 419 :DKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19061 # 1r0pA.58.160 read from T0506.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)G60 (1r0pA)M1211 because E (beta_S) conformation "forbidden" or filtered. T0506 58 :NI 1r0pA 1209 :NC T0506 61 :IEPDGT 1r0pA 1212 :LDEKFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19063 1crzA expands to /projects/compbio/data/pdb/1crz.pdb.gz 1crzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1crzA.58.75 read from T0506.t2k.many.frag # adding 1crzA to template set # found chain 1crzA in template set T0506 58 :NIGIEPDGT 1crzA 82 :QVTPNPDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19064 # 1w0pA.58.407 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)G60 (1w0pA)S410 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1w0pA)D412 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NI 1w0pA 408 :TL T0506 61 :I 1w0pA 411 :I T0506 63 :PDGT 1w0pA 413 :ESGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=19067 # 1kt6A.58.43 read from T0506.t2k.many.frag # found chain 1kt6A in training set T0506 58 :NIGIEPDGT 1kt6A 44 :EFSVDENGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19068 # 2a9dA.59.148 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)G60 (2a9dA)D244 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 2a9dA 243 :L T0506 61 :IEPDGTP 2a9dA 245 :ADPGGAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19070 # 1iow.59.257 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)E62 (1iow)D261 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGI 1iow 258 :VML T0506 63 :PDGTP 1iow 262 :SDGQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19072 # 1vl7A.59.50 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1vl7A 39 :FVIDDAKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19073 # 1l6rA.59.71 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)P67 (1l6rA)I77 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1l6rA 69 :IMFDNDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19074 # 1vjjA.59.573 read from T0506.t2k.many.frag # found chain 1vjjA in template set T0506 59 :IGIEPDGTP 1vjjA 574 :VCKVPDESE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19075 # 1yge.59.434 read from T0506.t2k.many.frag # found chain 1yge in training set Warning: unaligning (T0506)G60 (1yge)F436 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1yge 435 :L T0506 61 :IEPDGTP 1yge 437 :LREDGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19077 # 1khbA.59.317 read from T0506.t2k.many.frag # found chain 1khbA in template set T0506 59 :IGIEPDGTP 1khbA 315 :MKFDAQGHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19078 # 1utcA.59.155 read from T0506.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)G60 (1utcA)R157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1utcA)D159 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1utcA)W164 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1utcA 156 :Y T0506 61 :I 1utcA 158 :T T0506 63 :PDGT 1utcA 160 :AKQK Number of specific fragments extracted= 3 number of extra gaps= 3 total=19081 # 2f8aA.59.176 read from T0506.t2k.many.frag # found chain 2f8aA in template set T0506 59 :IGIEPDGTP 2f8aA 165 :FLVGPDGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19082 # 1pjxA.59.121 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)I59 (1pjxA)C122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1pjxA)D125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 1pjxA 123 :AF T0506 63 :PDGT 1pjxA 126 :YEGN Number of specific fragments extracted= 2 number of extra gaps= 3 total=19084 # 1ryp2.59.116 read from T0506.t2k.many.frag # found chain 1ryp2 in template set T0506 59 :IGIEPDGTP 1ryp2 109 :AGVQSNGDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19085 # 1kcfA.59.56 read from T0506.t2k.many.frag # found chain 1kcfA in template set T0506 59 :IGIEPDGTP 1kcfA 57 :ASQNEDSKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19086 # 2akaA.59.255 read from T0506.t2k.many.frag # found chain 2akaA in template set T0506 59 :IGIEPDGTP 2akaA 245 :IQFNSAGFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19087 # 3sil.59.37 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 3sil 41 :MCTTSKGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=19088 # 1h3qA.59.7 read from T0506.t2k.many.frag # found chain 1h3qA in template set T0506 59 :IGIEPDGTP 1h3qA 8 :VIVGHHDNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19089 1ynfA expands to /projects/compbio/data/pdb/1ynf.pdb.gz 1ynfA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ynfA.59.319 read from T0506.t2k.many.frag # adding 1ynfA to template set # found chain 1ynfA in template set Warning: unaligning (T0506)G60 (1ynfA)L310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1ynfA 309 :L T0506 61 :IEPDGT 1ynfA 311 :SRDDGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=19091 # 1nytA.59.87 read from T0506.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1nytA 88 :LMRLEDGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19092 1r9jA expands to /projects/compbio/data/pdb/1r9j.pdb.gz 1r9jA:# 1r9jA.59.540 read from T0506.t2k.many.frag # adding 1r9jA to template set # found chain 1r9jA in template set Warning: unaligning (T0506)I59 (1r9jA)V539 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1r9jA 540 :VDVPDLQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=19093 # 1iruK.59.104 read from T0506.t2k.many.frag # found chain 1iruK in template set T0506 59 :IGIEPDGTP 1iruK 105 :AGYDEHEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19094 1fjgK expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgK:# 1fjgK.59.30 read from T0506.t2k.many.frag # adding 1fjgK to template set # found chain 1fjgK in template set T0506 59 :IGIEPDGTP 1fjgK 31 :TITDPDGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19095 # 1uv4A.59.135 read from T0506.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)G60 (1uv4A)T137 because Y (epsilon') conformation "forbidden" or filtered. T0506 59 :I 1uv4A 136 :L T0506 61 :IEPDGTP 1uv4A 138 :FDKDGNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19097 1ewnA expands to /projects/compbio/data/pdb/1ewn.pdb.gz 1ewnA:# 1ewnA.59.28 read from T0506.t2k.many.frag # adding 1ewnA to template set # found chain 1ewnA in template set Warning: unaligning (T0506)P67 (1ewnA)E116 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1ewnA 108 :VRRLPNGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=19098 # 1vzyA.59.160 read from T0506.t2k.many.frag # found chain 1vzyA in template set T0506 59 :IGIEPDGTP 1vzyA 161 :VLVNPDNTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19099 # 1hxn.59.22 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)G60 (1hxn)V239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1hxn 238 :M T0506 61 :IEPDGT 1hxn 240 :SDNHGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19101 # 1r0pA.59.161 read from T0506.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)G60 (1r0pA)M1211 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1r0pA)D1213 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 1r0pA 1210 :C T0506 61 :I 1r0pA 1212 :L T0506 63 :PDGTP 1r0pA 1214 :EKFTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=19104 # 1gsoA.59.275 read from T0506.t2k.many.frag # found chain 1gsoA in training set Warning: unaligning (T0506)G60 (1gsoA)M275 because D (zeta) conformation "forbidden" or filtered. T0506 59 :I 1gsoA 274 :L T0506 61 :IEPDGTP 1gsoA 276 :IDKQGNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19106 1wcdJ expands to /projects/compbio/data/pdb/1wcd.pdb.gz 1wcdJ:# 1wcdJ.59.46 read from T0506.t2k.many.frag # adding 1wcdJ to template set # found chain 1wcdJ in template set Warning: unaligning (T0506)P67 (1wcdJ)G55 because Y (epsilon') conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1wcdJ 47 :LTVGDTGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19107 # 1uteA.59.226 read from T0506.t2k.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)G60 (1uteA)L228 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1uteA 227 :Y T0506 61 :IEPDGTP 1uteA 229 :QDENGLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19109 # 1h5wA.59.64 read from T0506.t2k.many.frag # found chain 1h5wA in template set Warning: unaligning (T0506)G65 (1h5wA)I71 because G (3-10) conformation "forbidden" or filtered. T0506 59 :IGIEPD 1h5wA 65 :FYKDPV T0506 66 :TP 1h5wA 72 :SY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19111 1t1uA expands to /projects/compbio/data/pdb/1t1u.pdb.gz 1t1uA:# 1t1uA.59.318 read from T0506.t2k.many.frag # adding 1t1uA to template set # found chain 1t1uA in template set Warning: unaligning (T0506)G60 (1t1uA)V321 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D325 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D325 Warning: unaligning (T0506)G65 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)G326 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)T327 Warning: unaligning (T0506)P67 (1t1uA)C328 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1t1uA 320 :F T0506 61 :IE 1t1uA 322 :VG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19113 # 2a9dA.60.149 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)E62 (2a9dA)D246 because P (beta_P) conformation "forbidden" or filtered. T0506 60 :GI 2a9dA 244 :DA T0506 63 :PDGTPF 2a9dA 247 :PGGAPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19115 # 1iow.60.258 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)G60 (1iow)M259 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGTPF 1iow 260 :LDSDGQFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19116 # 2f8aA.60.177 read from T0506.t2k.many.frag # found chain 2f8aA in template set T0506 60 :GIEPDGTPF 2f8aA 166 :LVGPDGVPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19117 # 1khbA.60.318 read from T0506.t2k.many.frag # found chain 1khbA in template set T0506 60 :GIEPDGTPF 1khbA 316 :KFDAQGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19118 # 1vjjA.60.574 read from T0506.t2k.many.frag # found chain 1vjjA in template set T0506 60 :GIEPDGTPF 1vjjA 575 :CKVPDESEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19119 # 1l6rA.60.72 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)P67 (1l6rA)I77 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1l6rA 70 :MFDNDGS T0506 68 :F 1l6rA 78 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=19121 # 1vl7A.60.51 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1vl7A 40 :VIDDAKN T0506 68 :F 1vl7A 48 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=19123 # 1uv4A.60.136 read from T0506.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)G60 (1uv4A)T137 because Y (epsilon') conformation "forbidden" or filtered. T0506 61 :IEPDGTPF 1uv4A 138 :FDKDGNPW Number of specific fragments extracted= 1 number of extra gaps= 1 total=19124 # 1yge.60.435 read from T0506.t2k.many.frag # found chain 1yge in training set T0506 60 :GIEPDGTPF 1yge 436 :FLREDGTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19125 # 1pjxA.60.122 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)E62 (1pjxA)D125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 1pjxA 123 :AF T0506 63 :PDGT 1pjxA 126 :YEGN T0506 68 :F 1pjxA 131 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=19128 # 1ynfA.60.320 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1ynfA 310 :LSRDDGS T0506 68 :F 1ynfA 318 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=19130 # 1r9jA.60.541 read from T0506.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0506)G65 (1r9jA)L545 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPD 1r9jA 540 :VDVPD T0506 66 :T 1r9jA 546 :Q T0506 68 :F 1r9jA 548 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=19133 # 1nytA.60.88 read from T0506.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)E62 (1nytA)L91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 1nytA 89 :MR T0506 63 :PDGT 1nytA 92 :EDGR T0506 68 :F 1nytA 97 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=19136 # 1wcdJ.60.47 read from T0506.t2k.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)E62 (1wcdJ)G50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1wcdJ)G55 because Y (epsilon') conformation "forbidden" or filtered. T0506 60 :GI 1wcdJ 48 :TV T0506 63 :PDGT 1wcdJ 51 :DTGS T0506 68 :F 1wcdJ 56 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=19139 # 1ryp2.60.117 read from T0506.t2k.many.frag # found chain 1ryp2 in template set T0506 60 :GIEPDGTPF 1ryp2 110 :GVQSNGDQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19140 # 3sil.60.38 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)E62 (3sil)T44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 3sil 42 :CT T0506 63 :PDGT 3sil 45 :SKGT T0506 68 :F 3sil 50 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=19143 # 1h3qA.60.8 read from T0506.t2k.many.frag # found chain 1h3qA in template set T0506 60 :GIEPDGTPF 1h3qA 9 :IVGHHDNPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19144 # 1kcfA.60.57 read from T0506.t2k.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)E62 (1kcfA)N60 because P (beta_P) conformation "forbidden" or filtered. T0506 60 :GI 1kcfA 58 :SQ T0506 63 :PDGTPF 1kcfA 61 :EDSKVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19146 # 1hxn.60.23 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)G60 (1hxn)V239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1hxn 240 :SDNHGA T0506 68 :F 1hxn 247 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=19148 # 1utcA.60.156 read from T0506.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)P67 (1utcA)W164 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1utcA 157 :RTDAKQK T0506 68 :F 1utcA 165 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19150 2bjfA expands to /projects/compbio/data/pdb/2bjf.pdb.gz 2bjfA:Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 73, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 75, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 77, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 79, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 285, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 287, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 297, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 650, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 945, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 947, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 949, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1081, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1083, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1085, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1087, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1089, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1091, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1093, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1095, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1097, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1322, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1324, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1326, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1328, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1330, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1332, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1334, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1529, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1531, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1533, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1535, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 1537, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2227, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2229, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2231, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2233, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2235, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2237, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2239, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2241, because occupancy 0.500 <= existing 0.500 in 2bjfA Skipped atom 2243, because occupancy 0.500 <= existing 0.500 in 2bjfA # 2bjfA.60.6 read from T0506.t2k.many.frag # adding 2bjfA to template set # found chain 2bjfA in template set Warning: unaligning (T0506)G60 (2bjfA)L7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2bjfA)H14 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 2bjfA 8 :ETKDGL T0506 68 :F 2bjfA 15 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=19152 # 1fjgK.60.31 read from T0506.t2k.many.frag # found chain 1fjgK in template set Warning: unaligning (T0506)G60 (1fjgK)I32 because P (beta_P) conformation "forbidden" or filtered. T0506 61 :IEPDGTPF 1fjgK 33 :TDPDGNPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19153 # 1ewnA.60.29 read from T0506.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0506)P67 (1ewnA)E116 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1ewnA 109 :RRLPNGT T0506 68 :F 1ewnA 117 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19155 # 1r0pA.60.162 read from T0506.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)E62 (1r0pA)D1213 because P (beta_P) conformation "forbidden" or filtered. T0506 60 :GI 1r0pA 1211 :ML T0506 63 :PDGTPF 1r0pA 1214 :EKFTVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19157 1zxuA expands to /projects/compbio/data/pdb/1zxu.pdb.gz 1zxuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zxuA.60.79 read from T0506.t2k.many.frag # adding 1zxuA to template set # found chain 1zxuA in template set T0506 60 :GIEPDGTPF 1zxuA 80 :LLDGSGTPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19158 1vetA expands to /projects/compbio/data/pdb/1vet.pdb.gz 1vetA:# 1vetA.60.23 read from T0506.t2k.many.frag # adding 1vetA to template set # found chain 1vetA in template set T0506 60 :GIEPDGTPF 1vetA 24 :VSDRDGVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19159 # 1gk9B.60.180 read from T0506.t2k.many.frag # found chain 1gk9B in training set Warning: unaligning (T0506)G60 (1gk9B)Y181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1gk9B)D183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1gk9B)I188 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 1gk9B 182 :A T0506 63 :PDGT 1gk9B 184 :VNGN T0506 68 :F 1gk9B 189 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=19162 # 1t1uA.60.319 read from T0506.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0506)E62 (1t1uA)G323 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D325 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D325 Warning: unaligning (T0506)G65 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)G326 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)T327 Warning: unaligning (T0506)P67 (1t1uA)C328 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F68 (1t1uA)G329 because Y (epsilon') conformation "forbidden" or filtered. T0506 60 :GI 1t1uA 321 :VV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19163 1ei6A expands to /projects/compbio/data/pdb/1ei6.pdb.gz 1ei6A:# 1ei6A.60.245 read from T0506.t2k.many.frag # adding 1ei6A to template set # found chain 1ei6A in template set Warning: unaligning (T0506)G60 (1ei6A)K247 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1ei6A)D249 because P (beta_P) conformation "forbidden" or filtered. T0506 61 :I 1ei6A 248 :T T0506 63 :PDGTPF 1ei6A 250 :AIGRPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=19165 # 1vzyA.60.161 read from T0506.t2k.many.frag # found chain 1vzyA in template set T0506 60 :GIEPDGTPF 1vzyA 162 :LVNPDNTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19166 # 2f8aA.61.178 read from T0506.t2k.many.frag # found chain 2f8aA in template set Warning: unaligning (T0506)E62 (2f8aA)G168 because P (beta_P) conformation "forbidden" or filtered. T0506 61 :I 2f8aA 167 :V T0506 63 :PDGTPFF 2f8aA 169 :PDGVPLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19168 # 1nytA.61.89 read from T0506.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1nytA 90 :RLEDGR T0506 68 :FF 1nytA 97 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19170 # 1ynfA.61.321 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1ynfA 311 :SRDDGS T0506 68 :FF 1ynfA 318 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=19172 # 1uv4A.61.137 read from T0506.t2k.many.frag # found chain 1uv4A in training set T0506 61 :IEPDGTPFF 1uv4A 138 :FDKDGNPWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19173 # 2a9dA.61.150 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 61 :IEPDGTPFF 2a9dA 245 :ADPGGAPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19174 # 1iow.61.259 read from T0506.t2k.many.frag # found chain 1iow in template set T0506 61 :IEPDGTPFF 1iow 260 :LDSDGQFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19175 # 2bjfA.61.7 read from T0506.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)E62 (2bjfA)T9 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2bjfA)H14 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 2bjfA 8 :E T0506 63 :PDGT 2bjfA 10 :KDGL T0506 68 :FF 2bjfA 15 :LF Number of specific fragments extracted= 3 number of extra gaps= 2 total=19178 # 1vl7A.61.52 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)E62 (1vl7A)D42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 1vl7A 41 :I T0506 63 :PDGT 1vl7A 43 :DAKN T0506 68 :FF 1vl7A 48 :YI Number of specific fragments extracted= 3 number of extra gaps= 2 total=19181 # 1khbA.61.319 read from T0506.t2k.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)F69 because of BadResidue code BAD_PEPTIDE in next template residue (1khbA)I326 T0506 61 :IEPDGTPF 1khbA 317 :FDAQGHLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19182 # 1l6rA.61.73 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)P67 (1l6rA)I77 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1l6rA 71 :FDNDGS T0506 68 :FF 1l6rA 78 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19184 # 1pjxA.61.123 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1pjxA 124 :FDYEGN T0506 68 :FF 1pjxA 131 :WI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19186 # 1wcdJ.61.48 read from T0506.t2k.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)P67 (1wcdJ)G55 because Y (epsilon') conformation "forbidden" or filtered. T0506 61 :IEPDGT 1wcdJ 49 :VGDTGS T0506 68 :FF 1wcdJ 56 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19188 # 1vjjA.61.575 read from T0506.t2k.many.frag # found chain 1vjjA in template set T0506 61 :IEPDGTPFF 1vjjA 576 :KVPDESEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19189 # 1ryp2.61.118 read from T0506.t2k.many.frag # found chain 1ryp2 in template set T0506 61 :IEPDGTPFF 1ryp2 111 :VQSNGDQFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19190 # 1vetA.61.24 read from T0506.t2k.many.frag # found chain 1vetA in template set T0506 61 :IEPDGTPFF 1vetA 25 :SDRDGVPVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19191 # 1r9jA.61.542 read from T0506.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0506)D64 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1r9jA)L545 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEP 1r9jA 541 :DVP T0506 66 :T 1r9jA 546 :Q T0506 68 :FF 1r9jA 548 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=19194 # 1yge.61.436 read from T0506.t2k.many.frag # found chain 1yge in training set T0506 61 :IEPDGTPFF 1yge 437 :LREDGTLKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19195 # 1h3qA.61.9 read from T0506.t2k.many.frag # found chain 1h3qA in template set T0506 61 :IEPDGTPFF 1h3qA 10 :VGHHDNPVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19196 # 1fjgK.61.32 read from T0506.t2k.many.frag # found chain 1fjgK in template set T0506 61 :IEPDGTPFF 1fjgK 33 :TDPDGNPIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19197 # 1hxn.61.24 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1hxn 240 :SDNHGA T0506 68 :FF 1hxn 247 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19199 # 3sil.61.39 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 3sil 43 :TTSKGT T0506 68 :FF 3sil 50 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19201 1t4wA expands to /projects/compbio/data/pdb/1t4w.pdb.gz 1t4wA:# 1t4wA.61.22 read from T0506.t2k.many.frag # adding 1t4wA to template set # found chain 1t4wA in template set T0506 61 :IEPDGTPFF 1t4wA 245 :ISSEHEKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19202 # 1kcfA.61.58 read from T0506.t2k.many.frag # found chain 1kcfA in template set T0506 61 :IEPDGTPFF 1kcfA 59 :QNEDSKVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=19203 # 1t1uA.61.320 read from T0506.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D325 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D325 Warning: unaligning (T0506)G65 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)G326 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)T327 Warning: unaligning (T0506)P67 (1t1uA)C328 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IE 1t1uA 322 :VG T0506 68 :FF 1t1uA 329 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19205 # 1ewnA.61.30 read from T0506.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0506)E62 (1ewnA)L111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1ewnA)E116 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 1ewnA 110 :R T0506 63 :PDGT 1ewnA 112 :PNGT T0506 68 :FF 1ewnA 117 :LR Number of specific fragments extracted= 3 number of extra gaps= 2 total=19208 # 1gk9B.61.181 read from T0506.t2k.many.frag # found chain 1gk9B in training set Warning: unaligning (T0506)P67 (1gk9B)I188 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1gk9B 182 :ADVNGN T0506 68 :FF 1gk9B 189 :GY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19210 # 1r0pA.61.163 read from T0506.t2k.many.frag # found chain 1r0pA in training set T0506 61 :IEPDGTPFF 1r0pA 1212 :LDEKFTVKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19211 # 1zxuA.61.80 read from T0506.t2k.many.frag # found chain 1zxuA in template set T0506 61 :IEPDGTPFF 1zxuA 81 :LDGSGTPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19212 # 1b43A.61.47 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 61 :IEPDGTPFF 1b43A 47 :MDSKGRITS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19213 1k8kC expands to /projects/compbio/data/pdb/1k8k.pdb.gz 1k8kC:# 1k8kC.61.103 read from T0506.t2k.many.frag # adding 1k8kC to template set # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1k8kC 104 :WAPNEK T0506 68 :FF 1k8kC 111 :FA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19215 # 2f8aA.62.179 read from T0506.t2k.many.frag # found chain 2f8aA in template set T0506 62 :EPDGTPFFF 2f8aA 168 :GPDGVPLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19216 # 1ynfA.62.322 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1ynfA 312 :RDDGS T0506 68 :FFF 1ynfA 318 :MLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19218 # 1uv4A.62.138 read from T0506.t2k.many.frag # found chain 1uv4A in training set T0506 62 :EPDGTPFFF 1uv4A 139 :DKDGNPWLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19219 # 1nytA.62.90 read from T0506.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1nytA 91 :LEDGR T0506 68 :FFF 1nytA 97 :LGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19221 # 2a9dA.62.151 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 62 :EPDGTPFFF 2a9dA 246 :DPGGAPYGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19222 # 1h3qA.62.10 read from T0506.t2k.many.frag # found chain 1h3qA in template set T0506 62 :EPDGTPFFF 1h3qA 11 :GHHDNPVFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19223 # 1vl7A.62.53 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1vl7A 42 :DDAKN T0506 68 :FFF 1vl7A 48 :YIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19225 # 2bjfA.62.8 read from T0506.t2k.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)P67 (2bjfA)H14 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 2bjfA 9 :TKDGL T0506 68 :FFF 2bjfA 15 :LFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19227 # 1hxn.62.25 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1hxn 241 :DNHGA T0506 68 :FFF 1hxn 247 :YVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19229 # 1iow.62.260 read from T0506.t2k.many.frag # found chain 1iow in template set T0506 62 :EPDGTPFFF 1iow 261 :DSDGQFYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19230 # 1t4wA.62.23 read from T0506.t2k.many.frag # found chain 1t4wA in template set T0506 62 :EPDGTPFFF 1t4wA 246 :SSEHEKYLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19231 # 1t1uA.62.321 read from T0506.t2k.many.frag # found chain 1t1uA in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D325 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D325 Warning: unaligning (T0506)G65 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)G326 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)T327 Warning: unaligning (T0506)P67 (1t1uA)C328 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)C332 T0506 62 :E 1t1uA 323 :G T0506 68 :FF 1t1uA 329 :GV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19233 # 1ryp2.62.119 read from T0506.t2k.many.frag # found chain 1ryp2 in template set T0506 62 :EPDGTPFFF 1ryp2 112 :QSNGDQFLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19234 # 1pjxA.62.124 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)E62 (1pjxA)D125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1pjxA 126 :YEGN T0506 68 :FFF 1pjxA 131 :WIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=19236 # 1mj5A.62.25 read from T0506.t2k.many.frag # found chain 1mj5A in training set T0506 62 :EPDGTPFFF 1mj5A 26 :EGTGDPILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19237 # 1fjgK.62.33 read from T0506.t2k.many.frag # found chain 1fjgK in template set T0506 62 :EPDGTPFFF 1fjgK 34 :DPDGNPITW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19238 # 1zxuA.62.81 read from T0506.t2k.many.frag # found chain 1zxuA in template set T0506 62 :EPDGTPFFF 1zxuA 82 :DGSGTPVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19239 # 1wcdJ.62.49 read from T0506.t2k.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)P67 (1wcdJ)G55 because Y (epsilon') conformation "forbidden" or filtered. T0506 62 :EPDGT 1wcdJ 50 :GDTGS T0506 68 :FFF 1wcdJ 56 :LIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19241 # 1vetA.62.25 read from T0506.t2k.many.frag # found chain 1vetA in template set Warning: unaligning (T0506)E62 (1vetA)D26 because P (beta_P) conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 1vetA 27 :RDGVPVIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19242 # 1wdvA.62.49 read from T0506.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P63 (1wdvA)N51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :E 1wdvA 50 :D T0506 64 :DGT 1wdvA 52 :AGG T0506 68 :FFF 1wdvA 56 :YAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=19245 1wteA expands to /projects/compbio/data/pdb/1wte.pdb.gz 1wteA:# 1wteA.62.114 read from T0506.t2k.many.frag # adding 1wteA to template set # found chain 1wteA in template set Warning: unaligning (T0506)P67 (1wteA)I120 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1wteA 115 :RDDGR T0506 68 :FFF 1wteA 121 :ELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19247 # 1ewnA.62.31 read from T0506.t2k.many.frag # found chain 1ewnA in template set Warning: unaligning (T0506)P67 (1ewnA)E116 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1ewnA 111 :LPNGT T0506 68 :FFF 1ewnA 117 :LRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19249 # 1k8kC.62.104 read from T0506.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)E62 (1k8kC)A105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1k8kC 106 :PNEK T0506 68 :FFF 1k8kC 111 :FAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19251 # 1b43A.62.48 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 62 :EPDGTPFFF 1b43A 48 :DSKGRITSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19252 # 3sil.62.40 read from T0506.t2k.many.frag # found chain 3sil in training set Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 3sil 44 :TSKGT T0506 68 :FFF 3sil 50 :VVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19254 2bmoA expands to /projects/compbio/data/pdb/2bmo.pdb.gz 2bmoA:Skipped atom 111, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 113, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 115, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 117, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 119, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 121, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 123, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 125, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 240, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 242, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 246, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 248, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 250, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 252, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 254, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 256, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 260, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 268, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 270, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 468, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 470, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 477, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 479, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 481, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 483, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 485, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 487, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 489, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 491, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 493, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 720, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 726, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 728, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 730, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 766, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 770, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 772, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 806, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 808, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 810, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 812, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 814, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 1064, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1066, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1068, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1070, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1072, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1074, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1076, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1177, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1179, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1181, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1183, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1185, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1187, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1323, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1325, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1327, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1329, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1331, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1333, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1335, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1337, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1476, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1478, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1480, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1482, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1484, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1486, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1490, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1621, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1623, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1625, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1627, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1629, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1631, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1822, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1824, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1826, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1828, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1830, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1832, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1834, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1847, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1851, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1853, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1855, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1857, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1948, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1950, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1952, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1954, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1956, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1958, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 1960, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 1962, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 2253, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2255, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2257, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2259, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2261, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2263, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 2265, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 2267, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 2269, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 2293, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2295, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2297, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2299, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2301, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2303, because occupancy 0.000 <= existing 0.500 in 2bmoA Skipped atom 2305, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 2307, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 2309, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 2440, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2442, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2444, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2446, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2448, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2450, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2452, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2454, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2532, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2534, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2536, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2538, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2540, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2605, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2607, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2609, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2611, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2613, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2615, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2617, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2619, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2773, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2775, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2777, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2779, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2781, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2783, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2785, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2787, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2789, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2816, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2818, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2820, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2822, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2824, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2826, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2828, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2830, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2832, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2834, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2836, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2991, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2993, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2995, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2997, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 2999, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3001, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3003, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3005, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3032, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3034, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3036, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3038, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3040, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3042, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3044, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3046, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3048, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3050, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3052, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3054, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3056, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3058, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3060, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3062, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3064, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3066, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3068, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3070, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3072, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3074, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3076, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3078, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3341, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3343, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3345, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3347, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3349, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3351, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3353, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 3355, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 3357, because occupancy 0.000 <= existing 0.000 in 2bmoA Skipped atom 3454, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3456, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3458, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3460, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3462, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3464, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3466, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3468, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3470, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3472, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3474, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3525, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3527, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3529, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3531, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3533, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3535, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3543, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3545, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3547, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3549, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3551, because occupancy 0.500 <= existing 0.500 in 2bmoA Skipped atom 3553, because occupancy 0.500 <= existing 0.500 in 2bmoA # 2bmoA.62.231 read from T0506.t2k.many.frag # adding 2bmoA to template set # found chain 2bmoA in template set T0506 62 :EPDGTPFFF 2bmoA 232 :PPEGAGLQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19255 # 1pbyB.62.41 read from T0506.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1pbyB 42 :APGGR T0506 68 :FFF 1pbyB 48 :AYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19257 1zvtA expands to /projects/compbio/data/pdb/1zvt.pdb.gz 1zvtA:# 1zvtA.62.91 read from T0506.t2k.many.frag # adding 1zvtA to template set # found chain 1zvtA in template set T0506 62 :EPDGTPFFF 1zvtA 588 :ESDDQKLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19258 2ae5B expands to /projects/compbio/data/pdb/2ae5.pdb.gz 2ae5B:# 2ae5B.62.182 read from T0506.t2k.many.frag # adding 2ae5B to template set # found chain 2ae5B in template set Warning: unaligning (T0506)E62 (2ae5B)D183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2ae5B)I188 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 2ae5B 184 :REGT T0506 68 :FFF 2ae5B 189 :NYS Number of specific fragments extracted= 2 number of extra gaps= 2 total=19260 # 1gk9B.62.182 read from T0506.t2k.many.frag # found chain 1gk9B in training set Warning: unaligning (T0506)E62 (1gk9B)D183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1gk9B)I188 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1gk9B 184 :VNGN T0506 68 :FFF 1gk9B 189 :GYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19262 # 1uv4A.63.139 read from T0506.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)A71 (1uv4A)F148 because Y (epsilon') conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 1uv4A 140 :KDGNPWLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19263 # 1vl7A.63.54 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1vl7A)V51 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1vl7A 43 :DAKN T0506 68 :FFF 1vl7A 48 :YIY Number of specific fragments extracted= 2 number of extra gaps= 2 total=19265 # 1mj5A.63.26 read from T0506.t2k.many.frag # found chain 1mj5A in training set Warning: unaligning (T0506)P63 (1mj5A)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1mj5A)G29 because S (epsilon) conformation "forbidden" or filtered. T0506 64 :D 1mj5A 28 :T T0506 66 :TPFFFA 1mj5A 30 :DPILFQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=19267 # 2f8aA.63.180 read from T0506.t2k.many.frag # found chain 2f8aA in template set T0506 63 :PDGTPFFFA 2f8aA 169 :PDGVPLRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19268 # 1h3qA.63.11 read from T0506.t2k.many.frag # found chain 1h3qA in template set T0506 63 :PDGTPFFFA 1h3qA 12 :HHDNPVFEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19269 # 1ynfA.63.323 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1ynfA 313 :DDGS T0506 68 :FFFA 1ynfA 318 :MLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19271 1j5wA expands to /projects/compbio/data/pdb/1j5w.pdb.gz 1j5wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1j5wA.63.161 read from T0506.t2k.many.frag # adding 1j5wA to template set # found chain 1j5wA in template set Warning: unaligning (T0506)G65 (1j5wA)D152 because P (beta_P) conformation "forbidden" or filtered. T0506 63 :PD 1j5wA 150 :LK T0506 66 :TPFFFA 1j5wA 153 :IPLEIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19273 # 1nytA.63.91 read from T0506.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1nytA 92 :EDGR T0506 68 :FFFA 1nytA 97 :LGDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19275 # 2a9dA.63.152 read from T0506.t2k.many.frag # found chain 2a9dA in template set T0506 63 :PDGTPFFFA 2a9dA 247 :PGGAPYGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19276 # 1k8kC.63.105 read from T0506.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1k8kC 106 :PNEK T0506 68 :FFFA 1k8kC 111 :FAVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19278 # 1zxuA.63.82 read from T0506.t2k.many.frag # found chain 1zxuA in template set T0506 63 :PDGTPFFFA 1zxuA 83 :GSGTPVVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19279 # 1hq0A.63.131 read from T0506.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0506)P63 (1hq0A)Q851 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGTPFFFA 1hq0A 852 :EGKPVIIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=19280 # 1wdvA.63.50 read from T0506.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P63 (1wdvA)N51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1wdvA 52 :AGG T0506 68 :FFFA 1wdvA 56 :YAVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19282 # 2bmoA.63.232 read from T0506.t2k.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)A71 (2bmoA)T241 because Y (epsilon') conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 2bmoA 233 :PEGAGLQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=19283 # 1zvtA.63.92 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)G65 (1zvtA)D591 because G (3-10) conformation "forbidden" or filtered. T0506 63 :PD 1zvtA 589 :SD T0506 66 :TPFFFA 1zvtA 592 :QKLLMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19285 # 1b43A.63.49 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 63 :PDGTPFFFA 1b43A 49 :SKGRITSHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19286 # 1t4wA.63.24 read from T0506.t2k.many.frag # found chain 1t4wA in template set T0506 63 :PDGTPFFFA 1t4wA 247 :SEHEKYLWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19287 # 1r9jA.63.544 read from T0506.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0506)D64 (1r9jA)D544 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :P 1r9jA 543 :P T0506 65 :GT 1r9jA 545 :LQ T0506 68 :FFFA 1r9jA 548 :VIVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=19290 # 1gk9B.63.183 read from T0506.t2k.many.frag # found chain 1gk9B in training set Warning: unaligning (T0506)P67 (1gk9B)I188 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1gk9B 184 :VNGN T0506 68 :FFFA 1gk9B 189 :GYVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=19292 # 1pbyB.63.42 read from T0506.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1pbyB 43 :PGGR T0506 68 :FFFA 1pbyB 48 :AYAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19294 # 1q7lA.63.69 read from T0506.t2k.many.frag # found chain 1q7lA in training set T0506 63 :PDGTPFFFA 1q7lA 70 :PTLSSILLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19295 1xqwA expands to /projects/compbio/data/pdb/1xqw.pdb.gz 1xqwA:# 1xqwA.63.94 read from T0506.t2k.many.frag # adding 1xqwA to template set # found chain 1xqwA in template set Warning: unaligning (T0506)P63 (1xqwA)G95 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1xqwA)E97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1xqwA)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1xqwA)G103 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :D 1xqwA 96 :N T0506 66 :T 1xqwA 98 :K T0506 68 :FFF 1xqwA 100 :FLM Number of specific fragments extracted= 3 number of extra gaps= 4 total=19298 # 1kkoA.63.228 read from T0506.t2k.many.frag # found chain 1kkoA in training set Warning: unaligning (T0506)G65 (1kkoA)Y231 because N (gamma') conformation "forbidden" or filtered. T0506 63 :PD 1kkoA 229 :PR T0506 66 :TPFFFA 1kkoA 232 :HPTLHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19300 # 1wcdJ.63.50 read from T0506.t2k.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)P67 (1wcdJ)G55 because Y (epsilon') conformation "forbidden" or filtered. T0506 63 :PDGT 1wcdJ 51 :DTGS T0506 68 :FFFA 1wcdJ 56 :LIVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19302 # 1r0pA.63.165 read from T0506.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)A71 (1r0pA)D1222 because L (left) conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 1r0pA 1214 :EKFTVKVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19303 # 2ae5B.63.183 read from T0506.t2k.many.frag # found chain 2ae5B in template set Warning: unaligning (T0506)P67 (2ae5B)I188 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 2ae5B 184 :REGT T0506 68 :FFFA 2ae5B 189 :NYSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19305 # 1svsA.63.258 read from T0506.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0506)P67 (1svsA)I264 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1svsA 260 :TDTS T0506 68 :FFFA 1svsA 265 :ILFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19307 # 1r5mA.63.117 read from T0506.t2k.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)P67 (1r5mA)S234 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1r5mA 230 :HDGN T0506 68 :FFFA 1r5mA 235 :IVTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19309 # 1fjgK.63.34 read from T0506.t2k.many.frag # found chain 1fjgK in template set Warning: unaligning (T0506)F70 (1fjgK)W42 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1fjgK)S43 because Y (epsilon') conformation "forbidden" or filtered. T0506 63 :PDGTPFF 1fjgK 35 :PDGNPIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=19310 2a7mA expands to /projects/compbio/data/pdb/2a7m.pdb.gz 2a7mA:Skipped atom 2, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 4, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 8, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 10, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 12, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 14, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 52, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 54, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 56, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 58, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 128, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 130, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 132, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 134, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 140, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 142, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 144, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 146, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 176, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 178, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 246, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 248, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 250, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 256, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 258, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 260, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 262, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 313, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 331, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 333, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 335, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 337, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 343, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 345, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 347, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 349, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 355, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 357, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 359, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 361, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 363, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 385, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 387, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 389, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 391, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 393, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 510, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 512, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 514, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 516, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 518, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 632, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 634, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 700, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 702, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 704, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 721, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 755, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 757, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 759, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 813, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 815, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 817, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 819, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1189, because occupancy 0.500 <= existing 0.500 in 2a7mA Skipped atom 1191, because occupancy 0.500 <= existing 0.500 in 2a7mA Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in 2a7mA Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 2a7mA Skipped atom 1258, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1453, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1455, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1457, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1459, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1479, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1485, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1487, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1489, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1491, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1493, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1625, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1627, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1629, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1631, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1633, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1755, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1757, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1799, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1801, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1962, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1964, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 1966, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 2015, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 2057, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 2059, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 2061, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 2063, because occupancy 0.400 <= existing 0.600 in 2a7mA Skipped atom 2065, because occupancy 0.400 <= existing 0.600 in 2a7mA # 2a7mA.63.180 read from T0506.t2k.many.frag # adding 2a7mA to template set # found chain 2a7mA in template set Warning: unaligning (T0506)G65 (2a7mA)S183 because G (3-10) conformation "forbidden" or filtered. T0506 63 :PD 2a7mA 181 :EQ T0506 66 :TPFFFA 2a7mA 184 :GSVLLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19312 # 1hq0A.64.132 read from T0506.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0506)D64 (1hq0A)E852 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1hq0A 853 :GKPVIITS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19313 # 1j5wA.64.162 read from T0506.t2k.many.frag # found chain 1j5wA in template set Warning: unaligning (T0506)G65 (1j5wA)D152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1j5wA)Y159 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :D 1j5wA 151 :K T0506 66 :TPFFFA 1j5wA 153 :IPLEIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=19315 # 1vl7A.64.55 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1vl7A 44 :AKN T0506 68 :FFFAA 1vl7A 48 :YIYVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19317 # 1xhnA.64.63 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 64 :DGTPFFFAA 1xhnA 64 :SGVPYFYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19318 # 1uv4A.64.140 read from T0506.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)A71 (1uv4A)F148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1uv4A)G149 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGTPFFF 1uv4A 141 :DGNPWLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19319 1hs6A expands to /projects/compbio/data/pdb/1hs6.pdb.gz 1hs6A:# 1hs6A.64.126 read from T0506.t2k.many.frag # adding 1hs6A to template set # found chain 1hs6A in template set Warning: unaligning (T0506)D64 (1hs6A)K126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1hs6A)S133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1hs6A)Q134 because D (zeta) conformation "forbidden" or filtered. T0506 65 :GTPFFF 1hs6A 127 :EHPYLF Number of specific fragments extracted= 1 number of extra gaps= 2 total=19320 1sr9A expands to /projects/compbio/data/pdb/1sr9.pdb.gz 1sr9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1sr9A.64.68 read from T0506.t2k.many.frag # adding 1sr9A to template set # found chain 1sr9A in template set T0506 64 :DGTPFFFAA 1sr9A 69 :DRAPLWCAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19321 # 1kkoA.64.229 read from T0506.t2k.many.frag # found chain 1kkoA in training set T0506 64 :DGTPFFFAA 1kkoA 230 :RYHPTLHID Number of specific fragments extracted= 1 number of extra gaps= 0 total=19322 # 1po5A.64.51 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)D64 (1po5A)G71 because S (epsilon) conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1po5A 72 :SRPVVVLC Number of specific fragments extracted= 1 number of extra gaps= 1 total=19323 # 2f8aA.64.181 read from T0506.t2k.many.frag # found chain 2f8aA in template set T0506 64 :DGTPFFFAA 2f8aA 170 :DGVPLRRYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19324 # 2bmoA.64.233 read from T0506.t2k.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)A71 (2bmoA)T241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2bmoA)S242 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGTPFFF 2bmoA 234 :EGAGLQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=19325 # 1k8kC.64.106 read from T0506.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1k8kC)S115 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1k8kC 107 :NEK T0506 68 :FFFA 1k8kC 111 :FAVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19327 # 1zvtA.64.93 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)G65 (1zvtA)D591 because G (3-10) conformation "forbidden" or filtered. T0506 64 :D 1zvtA 590 :D T0506 66 :TPFFFAA 1zvtA 592 :QKLLMAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19329 # 1ynfA.64.324 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1ynfA 314 :DGS T0506 68 :FFFAA 1ynfA 318 :MLVLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19331 # 1svsA.64.259 read from T0506.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0506)G65 (1svsA)T262 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1svsA)I264 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :D 1svsA 261 :D T0506 66 :T 1svsA 263 :S T0506 68 :FFFAA 1svsA 265 :ILFLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=19334 # 1wdvA.64.51 read from T0506.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1wdvA 52 :AGG T0506 68 :FFFAA 1wdvA 56 :YAVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19336 # 1mj5A.64.27 read from T0506.t2k.many.frag # found chain 1mj5A in training set T0506 64 :DGTPFFFAA 1mj5A 28 :TGDPILFQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19337 # 1xqwA.64.95 read from T0506.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0506)P67 (1xqwA)V99 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1xqwA 96 :NEK T0506 68 :FFFAA 1xqwA 100 :FLMGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19339 # 1k7jA.64.60 read from T0506.t2k.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)A72 (1k7jA)C69 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGTPFFFA 1k7jA 61 :DGHNFTLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=19340 # 2a9dA.64.153 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)F70 (2a9dA)A254 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGTPFF 2a9dA 248 :GGAPYG T0506 71 :AA 2a9dA 255 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19342 # 2bjiA.64.81 read from T0506.t2k.many.frag # found chain 2bjiA in training set Warning: unaligning (T0506)A71 (2bjiA)I1089 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2bjiA)D1090 because D (zeta) conformation "forbidden" or filtered. T0506 64 :DGTPFFF 2bjiA 1082 :TDNPTWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19343 # 1r9jA.64.545 read from T0506.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1r9jA 544 :DLQ T0506 68 :FFFAA 1r9jA 548 :VIVAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19345 # 1nytA.64.92 read from T0506.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1nytA 93 :DGR T0506 68 :FFFAA 1nytA 97 :LGDNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19347 # 1t4wA.64.25 read from T0506.t2k.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)A71 (1t4wA)T255 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGTPFFF 1t4wA 248 :EHEKYLW T0506 72 :A 1t4wA 256 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=19349 # 1h3qA.64.12 read from T0506.t2k.many.frag # found chain 1h3qA in template set T0506 64 :DGTPFFFAA 1h3qA 13 :HDNPVFEME Number of specific fragments extracted= 1 number of extra gaps= 0 total=19350 # 1x9iA.64.178 read from T0506.t2k.many.frag # found chain 1x9iA in training set Warning: unaligning (T0506)G65 (1x9iA)K180 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T66 (1x9iA)R181 because L (left) conformation "forbidden" or filtered. T0506 64 :D 1x9iA 179 :Q T0506 67 :PFFFAA 1x9iA 182 :PTIIAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19352 1xtoA expands to /projects/compbio/data/pdb/1xto.pdb.gz 1xtoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xtoA.64.189 read from T0506.t2k.many.frag # adding 1xtoA to template set # found chain 1xtoA in template set Warning: unaligning (T0506)P67 (1xtoA)K193 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1xtoA 190 :TGG T0506 68 :FFFAA 1xtoA 194 :LFYAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19354 # 1r0pA.64.166 read from T0506.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)A71 (1r0pA)D1222 because L (left) conformation "forbidden" or filtered. T0506 64 :DGTPFFF 1r0pA 1215 :KFTVKVA T0506 72 :A 1r0pA 1223 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=19356 # 1jfbA.64.38 read from T0506.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)P67 (1jfbA)L41 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1jfbA 38 :DGS T0506 68 :FFFAA 1jfbA 42 :AWLVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19358 # 1d02A.64.90 read from T0506.t2k.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)P67 (1d02A)I94 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1d02A 91 :THK T0506 68 :FFFAA 1d02A 95 :LFGEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19360 # 1xhnA.65.64 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 65 :GTPFFFAAG 1xhnA 65 :GVPYFYLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19361 # 1vl7A.65.56 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1vl7A 45 :KN T0506 68 :FFFAAG 1vl7A 48 :YIYVSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19363 # 1po5A.65.52 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)G65 (1po5A)S72 because G (3-10) conformation "forbidden" or filtered. T0506 66 :TPFFFAAG 1po5A 73 :RPVVVLCG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19364 # 1hq0A.65.133 read from T0506.t2k.many.frag # found chain 1hq0A in template set T0506 65 :GTPFFFAAG 1hq0A 853 :GKPVIITSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19365 # 1j5wA.65.163 read from T0506.t2k.many.frag # found chain 1j5wA in template set T0506 65 :GTPFFFAAG 1j5wA 152 :DIPLEITYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19366 # 1uv4A.65.141 read from T0506.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)A71 (1uv4A)F148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1uv4A)G149 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GTPFFF 1uv4A 142 :GNPWLA T0506 73 :G 1uv4A 150 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=19368 # 1sr9A.65.69 read from T0506.t2k.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)G65 (1sr9A)R70 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :TPFFFAAG 1sr9A 71 :APLWCAVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19369 # 1hs6A.65.127 read from T0506.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)A72 (1hs6A)Q134 because D (zeta) conformation "forbidden" or filtered. T0506 65 :GTPFFFA 1hs6A 127 :EHPYLFS T0506 73 :G 1hs6A 135 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=19371 # 1svsA.65.260 read from T0506.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0506)P67 (1svsA)I264 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1svsA)N269 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GT 1svsA 262 :TS T0506 68 :FFFA 1svsA 265 :ILFL T0506 73 :G 1svsA 270 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=19374 # 1ynfA.65.325 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1ynfA 315 :GS T0506 68 :FFFAAG 1ynfA 318 :MLVLPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19376 # 1kkoA.65.230 read from T0506.t2k.many.frag # found chain 1kkoA in training set Warning: unaligning (T0506)G65 (1kkoA)Y231 because N (gamma') conformation "forbidden" or filtered. T0506 66 :TPFFFAAG 1kkoA 232 :HPTLHIDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19377 # 1jfbA.65.39 read from T0506.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)P67 (1jfbA)L41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1jfbA)K47 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GT 1jfbA 39 :GS T0506 68 :FFFAA 1jfbA 42 :AWLVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=19379 # 1xtoA.65.190 read from T0506.t2k.many.frag # found chain 1xtoA in template set Warning: unaligning (T0506)P67 (1xtoA)K193 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1xtoA)A197 because D (zeta) conformation "forbidden" or filtered. T0506 65 :GT 1xtoA 191 :GG T0506 68 :FFF 1xtoA 194 :LFY T0506 72 :AG 1xtoA 198 :PG Number of specific fragments extracted= 3 number of extra gaps= 2 total=19382 # 1r9jA.65.546 read from T0506.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0506)G65 (1r9jA)L545 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1r9jA 546 :Q T0506 68 :FFFAAG 1r9jA 548 :VIVASG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19384 # 1t4wA.65.26 read from T0506.t2k.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)G73 (1t4wA)M257 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1t4wA 249 :HEKYLWTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19385 1yvvA expands to /projects/compbio/data/pdb/1yvv.pdb.gz 1yvvA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yvvA.65.225 read from T0506.t2k.many.frag # adding 1yvvA to template set # found chain 1yvvA in template set Warning: unaligning (T0506)P67 (1yvvA)T228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1yvvA)T234 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GT 1yvvA 226 :LD T0506 68 :FFFAA 1yvvA 229 :WILHA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19387 # 1chmA.65.71 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)G65 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)D73 Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1chmA)V75 Warning: unaligning (T0506)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1chmA)V75 Warning: unaligning (T0506)F68 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)S77 Warning: unaligning (T0506)F69 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)S77 Warning: unaligning (T0506)F70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1chmA)I78 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)N81 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)N81 T0506 71 :A 1chmA 79 :S Number of specific fragments extracted= 1 number of extra gaps= 2 total=19388 # 1k8kC.65.107 read from T0506.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1k8kC 108 :EK T0506 68 :FFFAAG 1k8kC 111 :FAVGSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19390 # 1wdvA.65.52 read from T0506.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1wdvA 53 :GG T0506 68 :FFFAAG 1wdvA 56 :YAVVIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19392 # 2bmoA.65.234 read from T0506.t2k.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)P67 (2bmoA)G237 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (2bmoA)T241 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GT 2bmoA 235 :GA T0506 68 :FFF 2bmoA 238 :LQM T0506 72 :AG 2bmoA 242 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=19395 # 1xqwA.65.96 read from T0506.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0506)G65 (1xqwA)E97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1xqwA)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1xqwA)A105 because S (epsilon) conformation "forbidden" or filtered. T0506 66 :T 1xqwA 98 :K T0506 68 :FFFAA 1xqwA 100 :FLMGS Number of specific fragments extracted= 2 number of extra gaps= 3 total=19397 # 2a7mA.65.182 read from T0506.t2k.many.frag # found chain 2a7mA in template set Warning: unaligning (T0506)G65 (2a7mA)S183 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T66 (2a7mA)G184 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2a7mA)I190 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2a7mA)D191 because G (3-10) conformation "forbidden" or filtered. T0506 67 :PFFFA 2a7mA 185 :SVLLT Number of specific fragments extracted= 1 number of extra gaps= 2 total=19398 # 1r0pA.65.167 read from T0506.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)A71 (1r0pA)D1222 because L (left) conformation "forbidden" or filtered. T0506 65 :GTPFFF 1r0pA 1216 :FTVKVA T0506 72 :AG 1r0pA 1223 :FG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19400 # 1k7jA.65.61 read from T0506.t2k.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)A72 (1k7jA)C69 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GTPFFFA 1k7jA 62 :GHNFTLM T0506 73 :G 1k7jA 70 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=19402 # 1gk9A.65.14 read from T0506.t2k.many.frag # found chain 1gk9A in training set Warning: unaligning (T0506)G73 (1gk9A)D23 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1gk9A 15 :GMPHIYAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19403 # 2bjiA.65.82 read from T0506.t2k.many.frag # found chain 2bjiA in training set Warning: unaligning (T0506)A72 (2bjiA)D1090 because D (zeta) conformation "forbidden" or filtered. T0506 65 :GTPFFFA 2bjiA 1083 :DNPTWII T0506 73 :G 2bjiA 1091 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=19405 # 1nytA.65.93 read from T0506.t2k.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1nytA 94 :GR T0506 68 :FFFAAG 1nytA 97 :LGDNTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19407 # 2a9dA.65.154 read from T0506.t2k.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)G73 (2a9dA)P257 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 2a9dA 249 :GAPYGASI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19408 # 1zvtA.65.94 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)G73 (1zvtA)D599 because G (3-10) conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1zvtA 591 :DQKLLMAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19409 1y44A expands to /projects/compbio/data/pdb/1y44.pdb.gz 1y44A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y44A.65.29 read from T0506.t2k.many.frag # adding 1y44A to template set # found chain 1y44A in template set Warning: unaligning (T0506)G65 (1y44A)R30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1y44A)S32 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :T 1y44A 31 :R T0506 68 :FFFAAG 1y44A 33 :VWLFDC Number of specific fragments extracted= 2 number of extra gaps= 2 total=19411 # 1xhnA.66.65 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 66 :TPFFFAAGL 1xhnA 66 :VPYFYLSPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19412 # 1vl7A.66.57 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1vl7A)V51 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1vl7A 46 :N T0506 68 :FFF 1vl7A 48 :YIY T0506 72 :AGL 1vl7A 52 :SGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19415 # 1po5A.66.53 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)G73 (1po5A)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 66 :TPFFFAA 1po5A 73 :RPVVVLC T0506 74 :L 1po5A 81 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=19417 # 1hq0A.66.134 read from T0506.t2k.many.frag # found chain 1hq0A in template set T0506 66 :TPFFFAAGL 1hq0A 854 :KPVIITSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19418 # 1svsA.66.261 read from T0506.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0506)P67 (1svsA)I264 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1svsA 263 :S T0506 68 :FFFAAGL 1svsA 265 :ILFLNKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19420 # 1sr9A.66.70 read from T0506.t2k.many.frag # found chain 1sr9A in template set T0506 66 :TPFFFAAGL 1sr9A 71 :APLWCAVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19421 # 1j5wA.66.164 read from T0506.t2k.many.frag # found chain 1j5wA in template set Warning: unaligning (T0506)G73 (1j5wA)G160 because N (gamma') conformation "forbidden" or filtered. T0506 66 :TPFFFAA 1j5wA 153 :IPLEITY T0506 74 :L 1j5wA 161 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19423 # 1jfbA.66.40 read from T0506.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)P67 (1jfbA)L41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1jfbA)K47 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :T 1jfbA 40 :S T0506 68 :FFFAA 1jfbA 42 :AWLVT T0506 74 :L 1jfbA 48 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=19426 # 1hs6A.66.128 read from T0506.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)A72 (1hs6A)Q134 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)A137 T0506 66 :TPFFFA 1hs6A 128 :HPYLFS T0506 73 :G 1hs6A 135 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=19428 # 1ynfA.66.326 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1ynfA 316 :S T0506 68 :FFFAAGL 1ynfA 318 :MLVLPQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19430 # 1xtoA.66.191 read from T0506.t2k.many.frag # found chain 1xtoA in template set Warning: unaligning (T0506)P67 (1xtoA)K193 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1xtoA)A197 because D (zeta) conformation "forbidden" or filtered. T0506 66 :T 1xtoA 192 :G T0506 68 :FFF 1xtoA 194 :LFY T0506 72 :AGL 1xtoA 198 :PGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=19433 # 1r9jA.66.547 read from T0506.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1r9jA)A551 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :T 1r9jA 546 :Q T0506 68 :FFF 1r9jA 548 :VIV T0506 72 :AGL 1r9jA 552 :SGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19436 # 1chmA.66.72 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1chmA)V75 Warning: unaligning (T0506)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1chmA)V75 Warning: unaligning (T0506)F68 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)S77 Warning: unaligning (T0506)F69 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)S77 Warning: unaligning (T0506)F70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1chmA)I78 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)N81 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)N81 T0506 71 :A 1chmA 79 :S T0506 74 :L 1chmA 82 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=19438 # 1yvvA.66.226 read from T0506.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)P67 (1yvvA)T228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1yvvA)A233 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :T 1yvvA 227 :D T0506 68 :FFFA 1yvvA 229 :WILH T0506 73 :GL 1yvvA 234 :TS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19441 # 1xqwA.66.97 read from T0506.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0506)P67 (1xqwA)V99 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1xqwA 98 :K T0506 68 :FFFAAGL 1xqwA 100 :FLMGSAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19443 # 1uv4A.66.142 read from T0506.t2k.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)A71 (1uv4A)F148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1uv4A)G149 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1uv4A)F151 because S (epsilon) conformation "forbidden" or filtered. T0506 66 :TPFFF 1uv4A 143 :NPWLA T0506 73 :G 1uv4A 150 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=19445 # 2bmoA.66.235 read from T0506.t2k.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)A71 (2bmoA)T241 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :TPFFF 2bmoA 236 :AGLQM T0506 72 :AGL 2bmoA 242 :SKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19447 # 1r0pA.66.168 read from T0506.t2k.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)A71 (1r0pA)D1222 because L (left) conformation "forbidden" or filtered. T0506 66 :TPFFF 1r0pA 1217 :TVKVA T0506 72 :AGL 1r0pA 1223 :FGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19449 # 1t4wA.66.27 read from T0506.t2k.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)A71 (1t4wA)T255 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :TPFFF 1t4wA 250 :EKYLW T0506 72 :AGL 1t4wA 256 :KMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19451 1zl0A expands to /projects/compbio/data/pdb/1zl0.pdb.gz 1zl0A:Skipped atom 42, because occupancy 0.270 <= existing 0.730 in 1zl0A Skipped atom 44, because occupancy 0.270 <= existing 0.730 in 1zl0A Skipped atom 46, because occupancy 0.270 <= existing 0.730 in 1zl0A Skipped atom 48, because occupancy 0.270 <= existing 0.730 in 1zl0A Skipped atom 50, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 52, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 54, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 56, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 58, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 60, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 62, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 64, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 66, because occupancy 0.380 <= existing 0.620 in 1zl0A Skipped atom 196, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 198, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 200, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 202, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 272, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 274, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 276, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 278, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 280, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 282, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 284, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 307, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 309, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 311, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 313, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 315, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 391, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 393, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 395, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 397, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 399, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 401, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 403, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 426, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 428, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 430, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 432, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 434, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 441, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 443, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 445, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 447, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 449, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 451, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 453, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 455, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 457, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 459, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 461, because occupancy 0.490 <= existing 0.510 in 1zl0A Skipped atom 533, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 535, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 537, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 539, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 541, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 646, because occupancy 0.280 <= existing 0.710 in 1zl0A Skipped atom 648, because occupancy 0.280 <= existing 0.710 in 1zl0A Skipped atom 652, because occupancy 0.280 <= existing 0.710 in 1zl0A Skipped atom 654, because occupancy 0.280 <= existing 0.710 in 1zl0A Skipped atom 656, because occupancy 0.280 <= existing 0.710 in 1zl0A Skipped atom 760, because occupancy 0.370 <= existing 0.630 in 1zl0A Skipped atom 762, because occupancy 0.370 <= existing 0.630 in 1zl0A Skipped atom 842, because occupancy 0.390 <= existing 0.610 in 1zl0A Skipped atom 844, because occupancy 0.390 <= existing 0.610 in 1zl0A Skipped atom 846, because occupancy 0.390 <= existing 0.610 in 1zl0A Skipped atom 848, because occupancy 0.390 <= existing 0.610 in 1zl0A Skipped atom 850, because occupancy 0.390 <= existing 0.610 in 1zl0A Skipped atom 852, because occupancy 0.390 <= existing 0.610 in 1zl0A Skipped atom 854, because occupancy 0.390 <= existing 0.610 in 1zl0A Skipped atom 945, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 947, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 949, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 951, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 953, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 955, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 986, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 988, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 990, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 992, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 994, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 996, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 998, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 1000, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 1046, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 1048, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 1050, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 1052, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 1054, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 1056, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 1058, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 1191, because occupancy 0.290 <= existing 0.710 in 1zl0A Skipped atom 1193, because occupancy 0.290 <= existing 0.710 in 1zl0A Skipped atom 1222, because occupancy 0.500 <= existing 0.500 in 1zl0A Skipped atom 1224, because occupancy 0.500 <= existing 0.500 in 1zl0A Skipped atom 1226, because occupancy 0.500 <= existing 0.500 in 1zl0A Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 1zl0A Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 1zl0A Skipped atom 1245, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1247, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1249, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1251, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1253, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1259, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 1261, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 1263, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 1265, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 1267, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 1387, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1389, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1391, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1393, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1395, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1397, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1594, because occupancy 0.360 <= existing 0.640 in 1zl0A Skipped atom 1596, because occupancy 0.360 <= existing 0.640 in 1zl0A Skipped atom 1598, because occupancy 0.360 <= existing 0.640 in 1zl0A Skipped atom 1600, because occupancy 0.320 <= existing 0.640 in 1zl0A Skipped atom 1602, because occupancy 0.360 <= existing 0.640 in 1zl0A Skipped atom 1604, because occupancy 0.360 <= existing 0.640 in 1zl0A Skipped atom 1754, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 1756, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 1758, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 1760, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 1762, because occupancy 0.480 <= existing 0.520 in 1zl0A Skipped atom 1799, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1801, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1803, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1805, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1807, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1809, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1811, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 1834, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1836, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1838, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1840, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1842, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1844, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1846, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 1905, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 1907, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 1909, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 1911, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 1913, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 1933, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1935, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1937, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1939, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1950, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 1952, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 1954, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 1956, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 1958, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 1960, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 1962, because occupancy 0.400 <= existing 0.600 in 1zl0A Skipped atom 1968, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1970, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1972, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1974, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 1976, because occupancy 0.430 <= existing 0.570 in 1zl0A Skipped atom 2042, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 2044, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 2046, because occupancy 0.440 <= existing 0.560 in 1zl0A Skipped atom 2052, because occupancy 0.410 <= existing 0.590 in 1zl0A Skipped atom 2054, because occupancy 0.410 <= existing 0.590 in 1zl0A Skipped atom 2056, because occupancy 0.410 <= existing 0.590 in 1zl0A Skipped atom 2058, because occupancy 0.410 <= existing 0.590 in 1zl0A Skipped atom 2185, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2187, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2189, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2191, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2193, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2337, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2339, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2341, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2343, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2345, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2347, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2349, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2351, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2353, because occupancy 0.420 <= existing 0.580 in 1zl0A Skipped atom 2420, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2422, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2424, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2426, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2428, because occupancy 0.470 <= existing 0.530 in 1zl0A Skipped atom 2461, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 2463, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 2465, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 2467, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 2469, because occupancy 0.460 <= existing 0.540 in 1zl0A Skipped atom 2479, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 2481, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 2483, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 2485, because occupancy 0.450 <= existing 0.550 in 1zl0A Skipped atom 2491, because occupancy 0.350 <= existing 0.650 in 1zl0A Skipped atom 2493, because occupancy 0.350 <= existing 0.650 in 1zl0A Skipped atom 2495, because occupancy 0.350 <= existing 0.650 in 1zl0A Skipped atom 2497, because occupancy 0.350 <= existing 0.650 in 1zl0A Skipped atom 2499, because occupancy 0.350 <= existing 0.650 in 1zl0A Skipped atom 2501, because occupancy 0.350 <= existing 0.650 in 1zl0A Skipped atom 2503, because occupancy 0.350 <= existing 0.650 in 1zl0A Skipped atom 2527, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 2539, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 2541, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 2543, because occupancy 0.340 <= existing 0.660 in 1zl0A Skipped atom 2545, because occupancy 0.340 <= existing 0.660 in 1zl0A # 1zl0A.66.110 read from T0506.t2k.many.frag # adding 1zl0A to template set # found chain 1zl0A in template set Warning: unaligning (T0506)A71 (1zl0A)F114 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :TPFFF 1zl0A 109 :RPLIG T0506 72 :AGL 1zl0A 115 :SDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19453 1jr7A expands to /projects/compbio/data/pdb/1jr7.pdb.gz 1jr7A:# 1jr7A.66.172 read from T0506.t2k.many.frag # adding 1jr7A to template set # found chain 1jr7A in template set T0506 66 :TPFFFAAGL 1jr7A 187 :NSLLLHLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19454 # 1wdvA.66.53 read from T0506.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1wdvA)P61 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :T 1wdvA 54 :G T0506 68 :FFFAA 1wdvA 56 :YAVVI T0506 74 :L 1wdvA 62 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=19457 # 1zvtA.66.95 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)A71 (1zvtA)A597 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1zvtA)D599 because G (3-10) conformation "forbidden" or filtered. T0506 66 :TPFFF 1zvtA 592 :QKLLM T0506 72 :A 1zvtA 598 :S T0506 74 :L 1zvtA 600 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=19460 1sf8A expands to /projects/compbio/data/pdb/1sf8.pdb.gz 1sf8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1sf8A.66.66 read from T0506.t2k.many.frag # adding 1sf8A to template set # found chain 1sf8A in template set T0506 66 :TPFFFAAGL 1sf8A 565 :KYIFELNPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19461 # 2b8nA.66.127 read from T0506.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)A71 (2b8nA)L121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2b8nA)S122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2b8nA)G123 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :TPFFF 2b8nA 116 :TVLFL T0506 74 :L 2b8nA 124 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=19463 1v0jA expands to /projects/compbio/data/pdb/1v0j.pdb.gz 1v0jA:# 1v0jA.66.238 read from T0506.t2k.many.frag # adding 1v0jA to template set # found chain 1v0jA in template set Warning: unaligning (T0506)G73 (1v0jA)P246 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :TPFFFAA 1v0jA 239 :APVVYTG T0506 74 :L 1v0jA 247 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19465 # 2a7mA.66.183 read from T0506.t2k.many.frag # found chain 2a7mA in template set Warning: unaligning (T0506)T66 (2a7mA)G184 because S (epsilon) conformation "forbidden" or filtered. T0506 67 :PFFFAAGL 2a7mA 185 :SVLLTIDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19466 # 1k8kC.66.108 read from T0506.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1k8kC 109 :K T0506 68 :FFFAAGL 1k8kC 111 :FAVGSGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19468 # 1gk9A.66.15 read from T0506.t2k.many.frag # found chain 1gk9A in training set Warning: unaligning (T0506)A71 (1gk9A)A21 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1gk9A)N22 because G (3-10) conformation "forbidden" or filtered. T0506 66 :TPFFF 1gk9A 16 :MPHIY T0506 73 :GL 1gk9A 23 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19470 # 1y44A.66.30 read from T0506.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)P67 (1y44A)S32 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :T 1y44A 31 :R T0506 68 :FFFAAGL 1y44A 33 :VWLFDCG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19472 # 1xhnA.67.66 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 67 :PFFFAAGLT 1xhnA 67 :PYFYLSPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19473 # 1vl7A.67.58 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 1vl7A 48 :YIYVSGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19474 # 1po5A.67.54 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)A71 (1po5A)L78 because E (beta_S) conformation "forbidden" or filtered. T0506 67 :PFFF 1po5A 74 :PVVV T0506 72 :AGLT 1po5A 79 :CGTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19476 # 1svsA.67.262 read from T0506.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0506)P67 (1svsA)I264 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 1svsA 265 :ILFLNKKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19477 # 1sr9A.67.71 read from T0506.t2k.many.frag # found chain 1sr9A in template set T0506 67 :PFFFAAGLT 1sr9A 72 :PLWCAVDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19478 # 1m1fA.67.23 read from T0506.t2k.many.frag # found chain 1m1fA in training set Warning: unaligning (T0506)G73 (1m1fA)P30 because P (beta_P) conformation "forbidden" or filtered. T0506 67 :PFFFAA 1m1fA 24 :PVLIVT T0506 74 :LT 1m1fA 31 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19480 # 1j5wA.67.165 read from T0506.t2k.many.frag # found chain 1j5wA in template set T0506 67 :PFFFAAGLT 1j5wA 154 :PLEITYGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19481 # 1sf8A.67.67 read from T0506.t2k.many.frag # found chain 1sf8A in template set Warning: unaligning (T0506)A72 (1sf8A)N571 because N (gamma') conformation "forbidden" or filtered. T0506 67 :PFFFA 1sf8A 566 :YIFEL T0506 73 :GLT 1sf8A 572 :PDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=19483 # 1lucA.67.168 read from T0506.t2k.many.frag # found chain 1lucA in training set T0506 67 :PFFFAAGLT 1lucA 169 :PVYVVAESA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19484 # 1jfbA.67.41 read from T0506.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)P67 (1jfbA)L41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1jfbA)K47 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1jfbA 42 :AWLVT T0506 74 :LT 1jfbA 48 :HK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19486 # 1hs6A.67.129 read from T0506.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)A71 (1hs6A)S133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)A137 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (1hs6A)A137 T0506 67 :PFFF 1hs6A 129 :PYLF T0506 72 :AG 1hs6A 134 :QC Number of specific fragments extracted= 2 number of extra gaps= 2 total=19488 # 1hq0A.67.135 read from T0506.t2k.many.frag # found chain 1hq0A in template set T0506 67 :PFFFAAGLT 1hq0A 855 :PVIITSGNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19489 # 1v0jA.67.239 read from T0506.t2k.many.frag # found chain 1v0jA in template set T0506 67 :PFFFAAGLT 1v0jA 240 :PVVYTGPLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19490 # 1ynfA.67.327 read from T0506.t2k.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 1ynfA 318 :MLVLPQEC Number of specific fragments extracted= 1 number of extra gaps= 1 total=19491 2c3nA expands to /projects/compbio/data/pdb/2c3n.pdb.gz 2c3nA:Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 978, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 980, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 982, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 984, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1501, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1503, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1505, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1507, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1509, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1511, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1913, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1915, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1917, because occupancy 0.500 <= existing 0.500 in 2c3nA Skipped atom 1919, because occupancy 0.500 <= existing 0.500 in 2c3nA # 2c3nA.67.9 read from T0506.t2k.many.frag # adding 2c3nA to template set # found chain 2c3nA in template set T0506 67 :PFFFAAGLT 2c3nA 3 :LELYLDLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19492 1yvrA expands to /projects/compbio/data/pdb/1yvr.pdb.gz 1yvrA:# 1yvrA.67.22 read from T0506.t2k.many.frag # adding 1yvrA to template set # found chain 1yvrA in template set T0506 67 :PFFFAAGLT 1yvrA 23 :YVWQVSDMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19493 # 1zl0A.67.111 read from T0506.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)A71 (1zl0A)F114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1zl0A)S115 because S (epsilon) conformation "forbidden" or filtered. T0506 67 :PFFF 1zl0A 110 :PLIG T0506 73 :GLT 1zl0A 116 :DIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19495 # 1r9jA.67.548 read from T0506.t2k.many.frag # found chain 1r9jA in template set Warning: unaligning (T0506)P67 (1r9jA)L547 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1r9jA)A551 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1r9jA)S552 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFF 1r9jA 548 :VIV T0506 73 :GLT 1r9jA 553 :GSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=19497 # 1jr7A.67.173 read from T0506.t2k.many.frag # found chain 1jr7A in template set T0506 67 :PFFFAAGLT 1jr7A 188 :SLLLHLDDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=19498 # 1chmA.67.73 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1chmA)V75 Warning: unaligning (T0506)F68 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)S77 Warning: unaligning (T0506)F69 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)S77 Warning: unaligning (T0506)F70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1chmA)I78 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)N81 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)N81 T0506 71 :A 1chmA 79 :S T0506 74 :LT 1chmA 82 :ID Number of specific fragments extracted= 2 number of extra gaps= 2 total=19500 # 2bmoA.67.236 read from T0506.t2k.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)P67 (2bmoA)G237 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (2bmoA)T241 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2bmoA)S242 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (2bmoA)G245 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFF 2bmoA 238 :LQM T0506 73 :GL 2bmoA 243 :KY Number of specific fragments extracted= 2 number of extra gaps= 3 total=19502 1wfxA expands to /projects/compbio/data/pdb/1wfx.pdb.gz 1wfxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wfxA.67.117 read from T0506.t2k.many.frag # adding 1wfxA to template set # found chain 1wfxA in template set Warning: unaligning (T0506)P67 (1wfxA)K118 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1wfxA)S124 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1wfxA 119 :VHLTS T0506 74 :LT 1wfxA 125 :LE Number of specific fragments extracted= 2 number of extra gaps= 2 total=19504 # 1xqwA.67.98 read from T0506.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0506)P67 (1xqwA)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1xqwA)A105 because S (epsilon) conformation "forbidden" or filtered. T0506 68 :FFFAA 1xqwA 100 :FLMGS T0506 74 :LT 1xqwA 106 :YG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19506 # 1yvvA.67.227 read from T0506.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)P67 (1yvvA)T228 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1yvvA)H232 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFF 1yvvA 229 :WIL T0506 72 :AGLT 1yvvA 233 :ATSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=19508 # 1ty9A.67.84 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P67 (1ty9A)V85 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 1ty9A 86 :VFSTHAGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19509 # 1xtoA.67.192 read from T0506.t2k.many.frag # found chain 1xtoA in template set Warning: unaligning (T0506)P67 (1xtoA)K193 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1xtoA)G199 because D (zeta) conformation "forbidden" or filtered. T0506 68 :FFFAA 1xtoA 194 :LFYAP T0506 74 :LT 1xtoA 200 :LG Number of specific fragments extracted= 2 number of extra gaps= 2 total=19511 # 2a7mA.67.184 read from T0506.t2k.many.frag # found chain 2a7mA in template set T0506 67 :PFFFAAGLT 2a7mA 185 :SVLLTIDAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19512 # 2b8nA.67.128 read from T0506.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)A72 (2b8nA)S122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2b8nA)G124 because T (delta_L) conformation "forbidden" or filtered. T0506 67 :PFFFA 2b8nA 117 :VLFLL T0506 73 :G 2b8nA 123 :G T0506 75 :T 2b8nA 125 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=19515 # 1wdvA.67.54 read from T0506.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1wdvA)I60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1wdvA)P61 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFA 1wdvA 56 :YAVV T0506 74 :LT 1wdvA 62 :GD Number of specific fragments extracted= 2 number of extra gaps= 2 total=19517 # 1k8kC.67.109 read from T0506.t2k.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (1k8kC)R118 because L (left) conformation "forbidden" or filtered. T0506 68 :FFFAAGL 1k8kC 111 :FAVGSGS Number of specific fragments extracted= 1 number of extra gaps= 2 total=19518 # 1xhnA.68.67 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A71 (1xhnA)L71 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFF 1xhnA 68 :YFY T0506 72 :AGLTL 1xhnA 72 :SPLQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19520 # 1vl7A.68.59 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 68 :FFFAAGLTL 1vl7A 48 :YIYVSGLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19521 # 1po5A.68.55 read from T0506.t2k.many.frag # found chain 1po5A in training set T0506 68 :FFFAAGLTL 1po5A 75 :VVVLCGTDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19522 # 1sf8A.68.68 read from T0506.t2k.many.frag # found chain 1sf8A in template set Warning: unaligning (T0506)A71 (1sf8A)L570 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFF 1sf8A 567 :IFE T0506 72 :AGLTL 1sf8A 571 :NPDHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19524 # 1svsA.68.263 read from T0506.t2k.many.frag # found chain 1svsA in training set T0506 68 :FFFAAGLTL 1svsA 265 :ILFLNKKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19525 # 1lucA.68.169 read from T0506.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0506)G73 (1lucA)E175 because G (3-10) conformation "forbidden" or filtered. T0506 68 :FFFAA 1lucA 170 :VYVVA T0506 74 :LTL 1lucA 176 :SAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19527 # 1sr9A.68.72 read from T0506.t2k.many.frag # found chain 1sr9A in template set T0506 68 :FFFAAGLTL 1sr9A 73 :LWCAVDLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19528 # 1ty9A.68.85 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFF 1ty9A 86 :VFS T0506 72 :AGLTL 1ty9A 90 :HAGSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19530 # 1j5wA.68.166 read from T0506.t2k.many.frag # found chain 1j5wA in template set Warning: unaligning (T0506)G73 (1j5wA)G160 because N (gamma') conformation "forbidden" or filtered. T0506 68 :FFFAA 1j5wA 155 :LEITY T0506 74 :LTL 1j5wA 161 :LER Number of specific fragments extracted= 2 number of extra gaps= 1 total=19532 2f06A expands to /projects/compbio/data/pdb/2f06.pdb.gz 2f06A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 850, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 854, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 856, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 2f06A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1051, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1057, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1059, because occupancy 0.500 <= existing 0.500 in 2f06A Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 2f06A # 2f06A.68.48 read from T0506.t2k.many.frag # adding 2f06A to template set # found chain 2f06A in template set Warning: unaligning (T0506)F68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f06A)G47 Warning: unaligning (T0506)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f06A)G47 Warning: unaligning (T0506)G73 (2f06A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 70 :FAA 2f06A 48 :IVS T0506 74 :LTL 2f06A 52 :PDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19534 # 1jfbA.68.42 read from T0506.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)G73 (1jfbA)K47 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1jfbA 42 :AWLVT T0506 74 :LTL 1jfbA 48 :HKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19536 # 1m1fA.68.24 read from T0506.t2k.many.frag # found chain 1m1fA in training set Warning: unaligning (T0506)G73 (1m1fA)P30 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1m1fA 25 :VLIVT T0506 74 :LTL 1m1fA 31 :AAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=19538 # 2c3nA.68.10 read from T0506.t2k.many.frag # found chain 2c3nA in template set Warning: unaligning (T0506)A71 (2c3nA)L7 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFF 2c3nA 4 :ELY T0506 72 :AGLTL 2c3nA 8 :DLLSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19540 # 1v0jA.68.240 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)A72 (1v0jA)G245 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFA 1v0jA 241 :VVYT T0506 73 :GLTL 1v0jA 246 :PLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19542 # 1wfxA.68.118 read from T0506.t2k.many.frag # found chain 1wfxA in template set Warning: unaligning (T0506)G73 (1wfxA)S124 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1wfxA 119 :VHLTS T0506 74 :LTL 1wfxA 125 :LED Number of specific fragments extracted= 2 number of extra gaps= 1 total=19544 # 1zl0A.68.112 read from T0506.t2k.many.frag # found chain 1zl0A in template set T0506 68 :FFFAAGLTL 1zl0A 111 :LIGFSDISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19545 # 2asfA.68.51 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A71 (2asfA)T55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2asfA)G57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFF 2asfA 52 :RVI T0506 72 :A 2asfA 56 :T T0506 75 :TL 2asfA 59 :SQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=19548 # 2a7mA.68.185 read from T0506.t2k.many.frag # found chain 2a7mA in template set Warning: unaligning (T0506)A72 (2a7mA)I190 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2a7mA)D191 because G (3-10) conformation "forbidden" or filtered. T0506 68 :FFFA 2a7mA 186 :VLLT T0506 74 :LTL 2a7mA 192 :ASY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19550 # 1qmgA.68.230 read from T0506.t2k.many.frag # found chain 1qmgA in training set T0506 68 :FFFAAGLTL 1qmgA 302 :FTFATTLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19551 # 1yvrA.68.23 read from T0506.t2k.many.frag # found chain 1yvrA in template set T0506 68 :FFFAAGLTL 1yvrA 24 :VWQVSDMNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19552 # 1hs6A.68.130 read from T0506.t2k.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (1hs6A)A137 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (1hs6A)A137 T0506 68 :FFFAAG 1hs6A 130 :YLFSQC T0506 76 :L 1hs6A 138 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=19554 # 1wdvA.68.55 read from T0506.t2k.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)A71 (1wdvA)V59 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1wdvA)P61 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFF 1wdvA 56 :YAV T0506 72 :A 1wdvA 60 :I T0506 74 :LTL 1wdvA 62 :GDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=19557 # 1yvvA.68.228 read from T0506.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)G73 (1yvvA)T234 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1yvvA 229 :WILHA T0506 74 :LTL 1yvvA 235 :SQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=19559 # 2fnaA.68.173 read from T0506.t2k.many.frag # found chain 2fnaA in template set Warning: unaligning (T0506)G73 (2fnaA)E178 because D (zeta) conformation "forbidden" or filtered. T0506 68 :FFFAA 2fnaA 173 :IMSGS T0506 74 :LTL 2fnaA 179 :MGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19561 # 1ynfA.68.328 read from T0506.t2k.many.frag # found chain 1ynfA in template set T0506 68 :FFFAAGLTL 1ynfA 318 :MLVLPQECR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19562 # 2b8nA.68.129 read from T0506.t2k.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)G73 (2b8nA)G123 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 2b8nA 118 :LFLLS T0506 74 :LTL 2b8nA 124 :GGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19564 # 1jpzA.68.51 read from T0506.t2k.many.frag # found chain 1jpzA in training set T0506 68 :FFFAAGLTL 1jpzA 49 :TRYLSSQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19565 # 1atg.68.49 read from T0506.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0506)G73 (1atg)A56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1atg)D57 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFFAA 1atg 51 :NVFFS T0506 75 :TL 1atg 58 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19567 # 1flmA.68.44 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G73 (1flmA)G50 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 68 :FFFAA 1flmA 45 :VVPVG T0506 75 :TL 1flmA 52 :HK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19569 # 1chmA.68.74 read from T0506.t2k.many.frag # found chain 1chmA in template set Warning: unaligning (T0506)F68 because of BadResidue code BAD_PEPTIDE in next template residue (1chmA)S77 Warning: unaligning (T0506)F69 because of BadResidue code BAD_PEPTIDE at template residue (1chmA)S77 Warning: unaligning (T0506)F70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1chmA)I78 Warning: unaligning (T0506)A72 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1chmA)N81 Warning: unaligning (T0506)G73 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1chmA)N81 Warning: unaligning (T0506)L76 (1chmA)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 71 :A 1chmA 79 :S T0506 74 :LT 1chmA 82 :ID Number of specific fragments extracted= 2 number of extra gaps= 3 total=19571 # 1vl7A.69.60 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 69 :FFAAGLTLH 1vl7A 49 :IYVSGLAVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19572 # 1xhnA.69.68 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 69 :FFAAGLTLH 1xhnA 69 :FYLSPLQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19573 # 1svsA.69.264 read from T0506.t2k.many.frag # found chain 1svsA in training set T0506 69 :FFAAGLTLH 1svsA 266 :LFLNKKDLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19574 # 1po5A.69.56 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)A71 (1po5A)L78 because E (beta_S) conformation "forbidden" or filtered. T0506 69 :FF 1po5A 76 :VV T0506 72 :AGLTLH 1po5A 79 :CGTDAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19576 # 2f06A.69.49 read from T0506.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f06A)G47 Warning: unaligning (T0506)G73 (2f06A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 70 :FAA 2f06A 48 :IVS T0506 74 :LTLH 2f06A 52 :PDKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19578 # 1sf8A.69.69 read from T0506.t2k.many.frag # found chain 1sf8A in template set Warning: unaligning (T0506)A72 (1sf8A)N571 because N (gamma') conformation "forbidden" or filtered. T0506 69 :FFA 1sf8A 568 :FEL T0506 73 :GLTLH 1sf8A 572 :PDHVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19580 # 1j5wA.69.167 read from T0506.t2k.many.frag # found chain 1j5wA in template set T0506 69 :FFAAGLTLH 1j5wA 156 :EITYGLERI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19581 # 1ty9A.69.86 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. T0506 69 :FF 1ty9A 87 :FS T0506 72 :AGLTLH 1ty9A 90 :HAGSQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19583 # 1lucA.69.170 read from T0506.t2k.many.frag # found chain 1lucA in training set T0506 69 :FFAAGLTLH 1lucA 171 :YVVAESAST Number of specific fragments extracted= 1 number of extra gaps= 0 total=19584 # 1wfxA.69.119 read from T0506.t2k.many.frag # found chain 1wfxA in template set T0506 69 :FFAAGLTLH 1wfxA 120 :HLTSSLEDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19585 # 2c3nA.69.11 read from T0506.t2k.many.frag # found chain 2c3nA in template set T0506 69 :FFAAGLTLH 2c3nA 5 :LYLDLLSQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19586 # 1sr9A.69.73 read from T0506.t2k.many.frag # found chain 1sr9A in template set T0506 69 :FFAAGLTLH 1sr9A 74 :WCAVDLRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19587 1no7A expands to /projects/compbio/data/pdb/1no7.pdb.gz 1no7A:# 1no7A.69.376 read from T0506.t2k.many.frag # adding 1no7A to template set # found chain 1no7A in template set T0506 69 :FFAAGLTLH 1no7A 827 :TAGVRFDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19588 # 2asfA.69.52 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G73 (2asfA)G57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 69 :FFAA 2asfA 53 :VITT T0506 75 :TLH 2asfA 59 :SQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19590 # 1qmgA.69.231 read from T0506.t2k.many.frag # found chain 1qmgA in training set Warning: unaligning (T0506)A72 (1qmgA)T306 because Y (epsilon') conformation "forbidden" or filtered. T0506 69 :FFA 1qmgA 303 :TFA T0506 73 :GLTLH 1qmgA 307 :TLEQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19592 # 1yvvA.69.229 read from T0506.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)G73 (1yvvA)T234 because P (beta_P) conformation "forbidden" or filtered. T0506 69 :FFAA 1yvvA 230 :ILHA T0506 74 :LTLH 1yvvA 235 :SQWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19594 # 1zl0A.69.113 read from T0506.t2k.many.frag # found chain 1zl0A in template set T0506 69 :FFAAGLTLH 1zl0A 112 :IGFSDISVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19595 # 1v0jA.69.241 read from T0506.t2k.many.frag # found chain 1v0jA in template set T0506 69 :FFAAGLTLH 1v0jA 242 :VYTGPLDRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19596 # 1flmA.69.45 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 69 :FFAAGLTLH 1flmA 46 :VPVGGMHKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19597 # 1n9eA.69.99 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 69 :FFAAGLTLH 1n9eA 100 :TLKPNKTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19598 # 1atg.69.50 read from T0506.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0506)A71 (1atg)F54 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1atg)A56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1atg)D57 because Y (epsilon') conformation "forbidden" or filtered. T0506 69 :FF 1atg 52 :VF T0506 72 :A 1atg 55 :S T0506 75 :TLH 1atg 58 :EKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=19601 # 1m1fA.69.25 read from T0506.t2k.many.frag # found chain 1m1fA in training set T0506 69 :FFAAGLTLH 1m1fA 26 :LIVTPAAFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19602 # 2a7mA.69.186 read from T0506.t2k.many.frag # found chain 2a7mA in template set Warning: unaligning (T0506)G73 (2a7mA)D191 because G (3-10) conformation "forbidden" or filtered. T0506 69 :FFAA 2a7mA 187 :LLTI T0506 74 :LTLH 2a7mA 192 :ASYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19604 1epuA expands to /projects/compbio/data/pdb/1epu.pdb.gz 1epuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1epuA.69.71 read from T0506.t2k.many.frag # adding 1epuA to template set # found chain 1epuA in template set Warning: unaligning (T0506)A71 (1epuA)I74 because Y (epsilon') conformation "forbidden" or filtered. T0506 69 :FF 1epuA 72 :YL T0506 72 :AGLTLH 1epuA 75 :TPTEES Number of specific fragments extracted= 2 number of extra gaps= 1 total=19606 2b20A expands to /projects/compbio/data/pdb/2b20.pdb.gz 2b20A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 483, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 485, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 487, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 489, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 491, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 493, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 495, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 497, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 499, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 501, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 548, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 550, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 552, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 554, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1266, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1268, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1270, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1272, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1274, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1792, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 1794, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2480, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2482, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2484, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2486, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2488, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2490, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2492, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2494, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2496, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2498, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2500, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2502, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2504, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2506, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2895, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2897, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2899, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2901, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2903, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2905, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2907, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2909, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2911, because occupancy 0.500 <= existing 0.500 in 2b20A Skipped atom 2913, because occupancy 0.500 <= existing 0.500 in 2b20A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b20A.69.53 read from T0506.t2k.many.frag # adding 2b20A to template set # found chain 2b20A in template set Warning: unaligning (T0506)G73 (2b20A)G55 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)H77 (2b20A)H59 because G (3-10) conformation "forbidden" or filtered. T0506 69 :FFAA 2b20A 51 :VYIT T0506 74 :LTL 2b20A 56 :VTD Number of specific fragments extracted= 2 number of extra gaps= 2 total=19608 # 2fnaA.69.174 read from T0506.t2k.many.frag # found chain 2fnaA in template set T0506 69 :FFAAGLTLH 2fnaA 174 :MSGSEMGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19609 1xbiA expands to /projects/compbio/data/pdb/1xbi.pdb.gz 1xbiA:Skipped atom 212, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 214, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 216, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 266, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 268, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 270, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 272, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 322, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 324, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 326, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 328, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 330, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 338, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 340, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 342, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 344, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 346, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 393, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 395, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 397, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 399, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 442, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 444, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 446, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 448, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 450, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 464, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 466, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 468, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 470, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 476, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 478, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 480, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 482, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 484, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 490, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 492, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 494, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 594, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 596, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 598, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 600, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 829, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 831, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 833, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 835, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 837, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 843, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 845, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 847, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 849, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 851, because occupancy 0.350 <= existing 0.650 in 1xbiA # 1xbiA.69.75 read from T0506.t2k.many.frag # adding 1xbiA to template set # found chain 1xbiA in template set Warning: unaligning (T0506)G73 (1xbiA)S77 because E (beta_S) conformation "forbidden" or filtered. T0506 69 :FFAA 1xbiA 73 :AYVA T0506 74 :LTLH 1xbiA 78 :KQDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19611 # 1b43A.69.55 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 69 :FFAAGLTLH 1b43A 55 :SHLSGLFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19612 # 1vioA.69.110 read from T0506.t2k.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)G73 (1vioA)D113 because G (3-10) conformation "forbidden" or filtered. T0506 69 :FFAA 1vioA 109 :VLLT T0506 74 :LTLH 1vioA 114 :DGQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=19614 # 1gycA.69.449 read from T0506.t2k.many.frag # found chain 1gycA in template set Warning: unaligning (T0506)A71 (1gycA)H452 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)H77 (1gycA)H458 because H (helix) conformation "forbidden" or filtered. T0506 69 :FF 1gycA 450 :FL T0506 72 :AGLTL 1gycA 453 :CHIDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=19616 # 1vl7A.70.61 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 70 :FAA 1vl7A 50 :YVS T0506 74 :LTLHA 1vl7A 54 :LAVHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19618 # 1xhnA.70.69 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 70 :FAAGLTLHA 1xhnA 70 :YLSPLQLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19619 # 1ty9A.70.87 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1ty9A)H90 because E (beta_S) conformation "forbidden" or filtered. T0506 70 :F 1ty9A 88 :S T0506 73 :GLTLHA 1ty9A 91 :AGSQKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19621 # 1j5wA.70.168 read from T0506.t2k.many.frag # found chain 1j5wA in template set Warning: unaligning (T0506)G73 (1j5wA)G160 because N (gamma') conformation "forbidden" or filtered. T0506 70 :FAA 1j5wA 157 :ITY T0506 74 :LTLHA 1j5wA 161 :LERIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19623 # 2f06A.70.50 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 70 :FAAGLTLHA 2f06A 48 :IVSDPDKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19624 # 1po5A.70.57 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)A72 (1po5A)C79 because E (beta_S) conformation "forbidden" or filtered. T0506 70 :FA 1po5A 77 :VL T0506 73 :GLTLHA 1po5A 80 :GTDAIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19626 # 1svsA.70.265 read from T0506.t2k.many.frag # found chain 1svsA in training set T0506 70 :FAAGLTLHA 1svsA 267 :FLNKKDLFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19627 # 1flmA.70.46 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 70 :FAAG 1flmA 47 :PVGG T0506 75 :TLHA 1flmA 52 :HKTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19629 # 1lucA.70.171 read from T0506.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0506)G73 (1lucA)E175 because G (3-10) conformation "forbidden" or filtered. T0506 70 :FAA 1lucA 172 :VVA T0506 74 :LTLHA 1lucA 176 :SASTT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19631 # 2asfA.70.53 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G73 (2asfA)G57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 70 :FAA 2asfA 54 :ITT T0506 75 :TLHA 2asfA 59 :SQKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19633 # 1sf8A.70.70 read from T0506.t2k.many.frag # found chain 1sf8A in template set T0506 70 :FAAGLTLHA 1sf8A 569 :ELNPDHVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19634 # 1no7A.70.377 read from T0506.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0506)G73 (1no7A)R831 because N (gamma') conformation "forbidden" or filtered. T0506 70 :FAA 1no7A 828 :AGV T0506 74 :LTLHA 1no7A 832 :FDRVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19636 # 1n9eA.70.100 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 70 :FAAGLTLHA 1n9eA 101 :LKPNKTEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19637 # 1epuA.70.72 read from T0506.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0506)G73 (1epuA)P76 because N (gamma') conformation "forbidden" or filtered. T0506 70 :FAA 1epuA 73 :LIT T0506 74 :LTLHA 1epuA 77 :TEESV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19639 # 1b43A.70.56 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 70 :FAAGLTLHA 1b43A 56 :HLSGLFYRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19640 # 1yvvA.70.230 read from T0506.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)A72 (1yvvA)A233 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1yvvA)T234 because P (beta_P) conformation "forbidden" or filtered. T0506 70 :FA 1yvvA 231 :LH T0506 74 :LTLHA 1yvvA 235 :SQWSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=19642 # 1atg.70.51 read from T0506.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0506)G73 (1atg)A56 because G (3-10) conformation "forbidden" or filtered. T0506 70 :FAA 1atg 53 :FFS T0506 74 :LTLHA 1atg 57 :DEKSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=19644 # 1sr9A.70.74 read from T0506.t2k.many.frag # found chain 1sr9A in template set T0506 70 :FAAGLTLHA 1sr9A 75 :CAVDLRDGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19645 2ex0A expands to /projects/compbio/data/pdb/2ex0.pdb.gz 2ex0A:# 2ex0A.70.113 read from T0506.t2k.many.frag # adding 2ex0A to template set # found chain 2ex0A in template set Warning: unaligning (T0506)L74 (2ex0A)G142 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :FAAG 2ex0A 138 :LYDD T0506 75 :TLHA 2ex0A 143 :SMEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19647 2bmfA expands to /projects/compbio/data/pdb/2bmf.pdb.gz 2bmfA:# 2bmfA.70.90 read from T0506.t2k.many.frag # adding 2bmfA to template set # found chain 2bmfA in template set Warning: unaligning (T0506)A72 (2bmfA)M260 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :FA 2bmfA 258 :DL T0506 73 :GLTLHA 2bmfA 261 :CHATFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19649 # 2c3nA.70.12 read from T0506.t2k.many.frag # found chain 2c3nA in template set T0506 70 :FAAGLTLHA 2c3nA 6 :YLDLLSQPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=19650 # 2dpmA.70.237 read from T0506.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)A72 (2dpmA)N240 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :FA 2dpmA 238 :LS T0506 73 :GLTLHA 2dpmA 241 :SSSALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19652 1yrkA expands to /projects/compbio/data/pdb/1yrk.pdb.gz 1yrkA:# 1yrkA.70.86 read from T0506.t2k.many.frag # adding 1yrkA to template set # found chain 1yrkA in template set Warning: unaligning (T0506)A72 (1yrkA)V86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1yrkA)G87 because P (beta_P) conformation "forbidden" or filtered. T0506 70 :FA 1yrkA 84 :VT T0506 74 :LTLHA 1yrkA 88 :VSVLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19654 1nuuA expands to /projects/compbio/data/pdb/1nuu.pdb.gz 1nuuA:# 1nuuA.70.130 read from T0506.t2k.many.frag # adding 1nuuA to template set # found chain 1nuuA in template set T0506 70 :FAAGLTLHA 1nuuA 131 :KLLCGADVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19655 # 1wfxA.70.120 read from T0506.t2k.many.frag # found chain 1wfxA in template set T0506 70 :FAAGLTLHA 1wfxA 121 :LTSSLEDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19656 # 2cfeA.70.128 read from T0506.t2k.many.frag # found chain 2cfeA in template set Warning: unaligning (T0506)G73 (2cfeA)D132 because E (beta_S) conformation "forbidden" or filtered. T0506 70 :FAA 2cfeA 129 :EVI T0506 74 :LTLHA 2cfeA 133 :GMNVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19658 # 2a7mA.70.187 read from T0506.t2k.many.frag # found chain 2a7mA in template set Warning: unaligning (T0506)G73 (2a7mA)D191 because G (3-10) conformation "forbidden" or filtered. T0506 70 :FAA 2a7mA 188 :LTI T0506 74 :LTLHA 2a7mA 192 :ASYTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19660 2f5xA expands to /projects/compbio/data/pdb/2f5x.pdb.gz 2f5xA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f5xA.70.188 read from T0506.t2k.many.frag # adding 2f5xA to template set # found chain 2f5xA in template set Warning: unaligning (T0506)A72 (2f5xA)D179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2f5xA)Q180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)H77 (2f5xA)T184 because G (3-10) conformation "forbidden" or filtered. T0506 70 :FA 2f5xA 177 :MC T0506 74 :LTL 2f5xA 181 :TTN T0506 78 :A 2f5xA 185 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=19663 # 1zl0A.70.114 read from T0506.t2k.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)A71 (1zl0A)F114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1zl0A)S115 because S (epsilon) conformation "forbidden" or filtered. T0506 70 :F 1zl0A 113 :G T0506 73 :GLTLHA 1zl0A 116 :DISVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19665 1h6dA expands to /projects/compbio/data/pdb/1h6d.pdb.gz 1h6dA:# 1h6dA.70.113 read from T0506.t2k.many.frag # adding 1h6dA to template set # found chain 1h6dA in template set Warning: unaligning (T0506)A71 (1h6dA)V115 because E (beta_S) conformation "forbidden" or filtered. T0506 70 :F 1h6dA 114 :L T0506 72 :AGLTLHA 1h6dA 116 :SGNAEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19667 # 1vl7A.71.62 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A71 (1vl7A)V51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 72 :A 1vl7A 52 :S T0506 74 :LTLHAR 1vl7A 54 :LAVHTK Number of specific fragments extracted= 2 number of extra gaps= 2 total=19669 # 1xhnA.71.70 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 71 :AAGLTLHAR 1xhnA 71 :LSPLQLSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19670 # 1ty9A.71.88 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 1ty9A 90 :HAGSQKGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19671 # 2f06A.71.51 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 71 :AAGLTLHAR 2f06A 49 :VSDPDKAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19672 # 1flmA.71.47 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 71 :AAG 1flmA 48 :VGG T0506 75 :TLHAR 1flmA 52 :HKTEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19674 # 1n9eA.71.101 read from T0506.t2k.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)A72 (1n9eA)P103 because P (beta_P) conformation "forbidden" or filtered. T0506 71 :A 1n9eA 102 :K T0506 73 :GLTLHAR 1n9eA 104 :NKTEALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19676 # 1b43A.71.57 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 71 :AAGLTLHAR 1b43A 57 :LSGLFYRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19677 # 1j5wA.71.169 read from T0506.t2k.many.frag # found chain 1j5wA in template set T0506 71 :AAGLTLHAR 1j5wA 158 :TYGLERIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19678 # 2ex0A.71.114 read from T0506.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0506)A71 (2ex0A)Y139 because E (beta_S) conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 2ex0A 140 :DDGSMEYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=19679 # 2asfA.71.54 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A71 (2asfA)T55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 72 :AG 2asfA 56 :TG T0506 75 :TLHAR 2asfA 59 :SQKAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19681 # 1po5A.71.58 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)G73 (1po5A)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 71 :AA 1po5A 78 :LC T0506 74 :LTLHAR 1po5A 81 :TDAIRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19683 # 1no7A.71.378 read from T0506.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0506)G73 (1no7A)R831 because N (gamma') conformation "forbidden" or filtered. T0506 71 :AA 1no7A 829 :GV T0506 74 :LTLHAR 1no7A 832 :FDRVYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19685 # 2dpmA.71.238 read from T0506.t2k.many.frag # found chain 2dpmA in training set T0506 71 :AAGLTLHAR 2dpmA 239 :SNSSSALVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19686 # 1svsA.71.266 read from T0506.t2k.many.frag # found chain 1svsA in training set Warning: unaligning (T0506)A71 (1svsA)L268 because N (gamma') conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 1svsA 269 :NKKDLFEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19687 # 1epuA.71.73 read from T0506.t2k.many.frag # found chain 1epuA in template set Warning: unaligning (T0506)A71 (1epuA)I74 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 1epuA 75 :TPTEESVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19688 # 2cfeA.71.129 read from T0506.t2k.many.frag # found chain 2cfeA in template set Warning: unaligning (T0506)A72 (2cfeA)I131 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2cfeA)D132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0506 71 :A 2cfeA 130 :V T0506 75 :TLHAR 2cfeA 134 :MNVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19690 # 1atg.71.52 read from T0506.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0506)A71 (1atg)F54 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1atg)S55 because P (beta_P) conformation "forbidden" or filtered. T0506 73 :GLTLHAR 1atg 56 :ADEKSPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19691 # 2bmfA.71.91 read from T0506.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0506)A72 (2bmfA)M260 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :A 2bmfA 259 :L T0506 73 :GLTLHAR 2bmfA 261 :CHATFTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=19693 # 1lucA.71.172 read from T0506.t2k.many.frag # found chain 1lucA in training set T0506 71 :AAGLTLHAR 1lucA 173 :VAESASTTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19694 # 1yvvA.71.231 read from T0506.t2k.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)G73 (1yvvA)T234 because P (beta_P) conformation "forbidden" or filtered. T0506 71 :AA 1yvvA 232 :HA T0506 74 :LTLHAR 1yvvA 235 :SQWSRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19696 # 1yrkA.71.87 read from T0506.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0506)A72 (1yrkA)V86 because E (beta_S) conformation "forbidden" or filtered. T0506 71 :A 1yrkA 85 :T T0506 73 :GLTLHAR 1yrkA 87 :GVSVLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=19698 # 1n62A.71.86 read from T0506.t2k.many.frag # found chain 1n62A in training set T0506 71 :AAGLTLHAR 1n62A 87 :LSALQEGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19699 # 1nuuA.71.131 read from T0506.t2k.many.frag # found chain 1nuuA in template set T0506 71 :AAGLTLHAR 1nuuA 132 :LLCGADVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19700 # 1o12A.71.303 read from T0506.t2k.many.frag # found chain 1o12A in template set T0506 71 :AAGLTLHAR 1o12A 292 :TLFFSQAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19701 # 2btoA.71.288 read from T0506.t2k.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)A71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2btoA)E289 Warning: unaligning (T0506)A72 (2btoA)L290 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2btoA)G291 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHAR 2btoA 292 :IEEMIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19702 # 1xbiA.71.77 read from T0506.t2k.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)G73 (1xbiA)S77 because E (beta_S) conformation "forbidden" or filtered. T0506 71 :AA 1xbiA 75 :VA T0506 74 :LTLHAR 1xbiA 78 :KQDLGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19704 # 1sf8A.71.71 read from T0506.t2k.many.frag # found chain 1sf8A in template set T0506 71 :AAGLTLHAR 1sf8A 570 :LNPDHVLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19705 1yrtA expands to /projects/compbio/data/pdb/1yrt.pdb.gz 1yrtA:# 1yrtA.71.39 read from T0506.t2k.many.frag # adding 1yrtA to template set # found chain 1yrtA in template set Warning: unaligning (T0506)G73 (1yrtA)L42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)H77 (1yrtA)H46 because H (helix) conformation "forbidden" or filtered. T0506 71 :AA 1yrtA 40 :FR T0506 74 :LTL 1yrtA 43 :VNP T0506 78 :AR 1yrtA 47 :ST Number of specific fragments extracted= 3 number of extra gaps= 2 total=19708 1zx0A expands to /projects/compbio/data/pdb/1zx0.pdb.gz 1zx0A:# 1zx0A.71.67 read from T0506.t2k.many.frag # adding 1zx0A to template set # found chain 1zx0A in template set Warning: unaligning (T0506)A71 (1zx0A)G68 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (1zx0A)A72 because L (left) conformation "forbidden" or filtered. T0506 72 :AGL 1zx0A 69 :FGM T0506 76 :LHAR 1zx0A 73 :IAAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=19710 # 2f5xA.71.189 read from T0506.t2k.many.frag # found chain 2f5xA in template set Warning: unaligning (T0506)A72 (2f5xA)D179 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :A 2f5xA 178 :C T0506 73 :GLTLHAR 2f5xA 180 :QTTNTTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19712 # 1vl7A.72.63 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A72 (1vl7A)S52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 74 :LTLHARN 1vl7A 54 :LAVHTKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19713 # 1xhnA.72.71 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 72 :AGLTLHARN 1xhnA 72 :SPLQLSVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19714 # 1ty9A.72.89 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 72 :AGLTLHARN 1ty9A 90 :HAGSQKGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19715 # 1flmA.72.48 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G73 (1flmA)G50 because H (helix) conformation "forbidden" or filtered. T0506 72 :A 1flmA 49 :G T0506 74 :LTLHARN 1flmA 51 :MHKTEAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19717 # 2f06A.72.52 read from T0506.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)G73 (2f06A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 72 :A 2f06A 50 :S T0506 74 :LTLHARN 2f06A 52 :PDKAYKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19719 # 2ex0A.72.115 read from T0506.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0506)L74 (2ex0A)G142 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AG 2ex0A 140 :DD T0506 75 :TLHARN 2ex0A 143 :SMEYVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19721 # 2asfA.72.55 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 72 :AG 2asfA 56 :TG T0506 75 :TLHARN 2asfA 59 :SQKAVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19723 # 1b43A.72.58 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 72 :AGLTLHARN 1b43A 58 :SGLFYRTIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19724 # 1n9eA.72.102 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 72 :AGLTLHARN 1n9eA 103 :PNKTEALTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19725 # 1atg.72.53 read from T0506.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0506)A72 (1atg)S55 because P (beta_P) conformation "forbidden" or filtered. T0506 73 :GLTLHARN 1atg 56 :ADEKSPEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19726 # 2cfeA.72.130 read from T0506.t2k.many.frag # found chain 2cfeA in template set Warning: unaligning (T0506)A72 (2cfeA)I131 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0506 73 :G 2cfeA 132 :D T0506 75 :TLHARN 2cfeA 134 :MNVVKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=19728 # 1po5A.72.59 read from T0506.t2k.many.frag # found chain 1po5A in training set Warning: unaligning (T0506)A72 (1po5A)C79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1po5A)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 74 :LTLHARN 1po5A 81 :TDAIREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19729 # 2btoA.72.289 read from T0506.t2k.many.frag # found chain 2btoA in template set T0506 72 :AGLTLHARN 2btoA 290 :LGIEEMIKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19730 # 1zx0A.72.68 read from T0506.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0506)T75 (1zx0A)A72 because L (left) conformation "forbidden" or filtered. T0506 72 :AGL 1zx0A 69 :FGM T0506 76 :LHARN 1zx0A 73 :IAASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=19732 # 1no7A.72.379 read from T0506.t2k.many.frag # found chain 1no7A in template set Warning: unaligning (T0506)G73 (1no7A)R831 because N (gamma') conformation "forbidden" or filtered. T0506 72 :A 1no7A 830 :V T0506 74 :LTLHARN 1no7A 832 :FDRVYAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=19734 # 1epuA.72.74 read from T0506.t2k.many.frag # found chain 1epuA in template set T0506 72 :AGLTLHARN 1epuA 75 :TPTEESVKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=19735 # 2bmfA.72.92 read from T0506.t2k.many.frag # found chain 2bmfA in template set Warning: unaligning (T0506)A72 (2bmfA)M260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2bmfA)C261 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARN 2bmfA 262 :HATFTMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19736 # 2dpmA.72.239 read from T0506.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)A72 (2dpmA)N240 because Y (epsilon') conformation "forbidden" or filtered. T0506 73 :GLTLHARN 2dpmA 241 :SSSALVEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19737 # 1yrkA.72.88 read from T0506.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0506)G73 (1yrkA)G87 because P (beta_P) conformation "forbidden" or filtered. T0506 72 :A 1yrkA 86 :V T0506 74 :LTLHARN 1yrkA 88 :VSVLAER Number of specific fragments extracted= 2 number of extra gaps= 1 total=19739 # 1lucA.72.173 read from T0506.t2k.many.frag # found chain 1lucA in training set Warning: unaligning (T0506)G73 (1lucA)E175 because G (3-10) conformation "forbidden" or filtered. T0506 72 :A 1lucA 174 :A T0506 74 :LTLHARN 1lucA 176 :SASTTEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=19741 # 1o12A.72.304 read from T0506.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0506)G73 (1o12A)F294 because P (beta_P) conformation "forbidden" or filtered. T0506 72 :A 1o12A 293 :L T0506 74 :LTLHARN 1o12A 295 :FSQAVKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19743 # 1yrtA.72.40 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)G73 (1yrtA)L42 because P (beta_P) conformation "forbidden" or filtered. T0506 72 :A 1yrtA 41 :R T0506 74 :LTLHARN 1yrtA 43 :VNPHSTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=19745 # 1yvvA.72.232 read from T0506.t2k.many.frag # found chain 1yvvA in template set T0506 72 :AGLTLHARN 1yvvA 233 :ATSQWSRQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19746 # 1j5wA.72.170 read from T0506.t2k.many.frag # found chain 1j5wA in template set T0506 72 :AGLTLHARN 1j5wA 159 :YGLERIAMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19747 # 1o97D.72.268 read from T0506.t2k.many.frag # found chain 1o97D in training set T0506 72 :AGLTLHARN 1o97D 269 :SGSIQHMAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19748 # 1n62A.72.87 read from T0506.t2k.many.frag # found chain 1n62A in training set T0506 72 :AGLTLHARN 1n62A 88 :SALQEGFRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19749 1yx1A expands to /projects/compbio/data/pdb/1yx1.pdb.gz 1yx1A:Skipped atom 6, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 8, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 10, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 1yx1A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1yx1A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1yx1A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 236, because occupancy 0.450 <= existing 0.450 in 1yx1A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 238, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 388, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 390, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 392, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 394, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 396, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 897, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 899, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 901, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 903, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 905, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 907, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 909, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 939, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 941, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 945, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 947, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 949, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1128, because occupancy 0.400 <= existing 0.600 in 1yx1A Skipped atom 1130, because occupancy 0.400 <= existing 0.600 in 1yx1A Skipped atom 1132, because occupancy 0.400 <= existing 0.600 in 1yx1A Skipped atom 1134, because occupancy 0.400 <= existing 0.600 in 1yx1A Skipped atom 1136, because occupancy 0.400 <= existing 0.600 in 1yx1A Skipped atom 1138, because occupancy 0.400 <= existing 0.600 in 1yx1A Skipped atom 1140, because occupancy 0.400 <= existing 0.600 in 1yx1A Skipped atom 1192, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1194, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1196, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1198, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1200, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1206, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1208, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1210, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1212, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1214, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1216, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1218, because occupancy 0.500 <= existing 0.500 in 1yx1A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1401, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1403, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1405, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1407, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1463, because occupancy 0.300 <= existing 0.700 in 1yx1A Skipped atom 1465, because occupancy 0.300 <= existing 0.700 in 1yx1A Skipped atom 1467, because occupancy 0.300 <= existing 0.700 in 1yx1A Skipped atom 1469, because occupancy 0.300 <= existing 0.700 in 1yx1A Skipped atom 1471, because occupancy 0.300 <= existing 0.700 in 1yx1A Skipped atom 1473, because occupancy 0.300 <= existing 0.700 in 1yx1A Skipped atom 1475, because occupancy 0.300 <= existing 0.700 in 1yx1A Skipped atom 1692, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1694, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1696, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1698, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1700, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1743, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1745, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1747, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1749, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1751, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 1753, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 2012, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 2014, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 2016, because occupancy 0.500 <= existing 0.500 in 1yx1A Skipped atom 2018, because occupancy 0.500 <= existing 0.500 in 1yx1A # 1yx1A.72.111 read from T0506.t2k.many.frag # adding 1yx1A to template set # found chain 1yx1A in template set T0506 72 :AGLTLHARN 1yx1A 110 :PDLAALGRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19750 # 1rcqA.72.98 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)L74 (1rcqA)C101 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AG 1rcqA 99 :VH T0506 75 :TLHARN 1rcqA 102 :AWQLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19752 # 1svsA.72.267 read from T0506.t2k.many.frag # found chain 1svsA in training set T0506 72 :AGLTLHARN 1svsA 269 :NKKDLFEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19753 1zr6A expands to /projects/compbio/data/pdb/1zr6.pdb.gz 1zr6A:# 1zr6A.72.113 read from T0506.t2k.many.frag # adding 1zr6A to template set # found chain 1zr6A in template set Warning: unaligning (T0506)A72 (1zr6A)A108 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1zr6A)R109 because E (beta_S) conformation "forbidden" or filtered. T0506 74 :LTLHARN 1zr6A 110 :LGYTALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19754 # 1vl7A.73.64 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 1vl7A 54 :LAVHTKNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=19755 # 1ty9A.73.90 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 73 :GLTLHARNM 1ty9A 91 :AGSQKGREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19756 # 1xhnA.73.72 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 73 :GLTLHARNM 1xhnA 73 :PLQLSVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19757 # 1flmA.73.49 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 73 :G 1flmA 50 :G T0506 75 :TLHARNM 1flmA 52 :HKTEANV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19759 # 2f06A.73.53 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 73 :GLTLHARNM 2f06A 51 :DPDKAYKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19760 # 1b43A.73.59 read from T0506.t2k.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)G73 (1b43A)G59 because H (helix) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 1b43A 60 :LFYRTINL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19761 # 2ex0A.73.116 read from T0506.t2k.many.frag # found chain 2ex0A in template set Warning: unaligning (T0506)L74 (2ex0A)G142 because Y (epsilon') conformation "forbidden" or filtered. T0506 73 :G 2ex0A 141 :D T0506 75 :TLHARNM 2ex0A 143 :SMEYVDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19763 # 2asfA.73.56 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 73 :G 2asfA 57 :G T0506 75 :TLHARNM 2asfA 59 :SQKAVNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19765 # 2cfeA.73.131 read from T0506.t2k.many.frag # found chain 2cfeA in template set Warning: unaligning (T0506)L74 (2cfeA)G133 because T (delta_L) conformation "forbidden" or filtered. T0506 73 :G 2cfeA 132 :D T0506 75 :TLHARNM 2cfeA 134 :MNVVKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=19767 # 1n9eA.73.103 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 73 :GLTLHARNM 1n9eA 104 :NKTEALTYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19768 # 1zx0A.73.69 read from T0506.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0506)G73 (1zx0A)G70 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (1zx0A)A72 because L (left) conformation "forbidden" or filtered. T0506 74 :L 1zx0A 71 :M T0506 76 :LHARNM 1zx0A 73 :IAASKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=19770 # 1atg.73.54 read from T0506.t2k.many.frag # found chain 1atg in training set Warning: unaligning (T0506)L74 (1atg)D57 because Y (epsilon') conformation "forbidden" or filtered. T0506 73 :G 1atg 56 :A T0506 75 :TLHARNM 1atg 58 :EKSPEKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19772 # 2btoA.73.290 read from T0506.t2k.many.frag # found chain 2btoA in template set T0506 73 :GLTLHARNM 2btoA 291 :GIEEMIKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19773 # 1no7A.73.380 read from T0506.t2k.many.frag # found chain 1no7A in template set T0506 73 :GLTLHARNM 1no7A 831 :RFDRVYATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19774 2anuA expands to /projects/compbio/data/pdb/2anu.pdb.gz 2anuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2anuA.73.132 read from T0506.t2k.many.frag # adding 2anuA to template set # found chain 2anuA in template set Warning: unaligning (T0506)G73 (2anuA)P121 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 2anuA 122 :VEEIVEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19775 # 1xg4A.73.94 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 73 :GLTLHARNM 1xg4A 96 :NVARTVKSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19776 # 1epuA.73.75 read from T0506.t2k.many.frag # found chain 1epuA in template set T0506 73 :GLTLHARNM 1epuA 76 :PTEESVKCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19777 # 2f6kA.73.135 read from T0506.t2k.many.frag # found chain 2f6kA in template set T0506 73 :GLTLHARNM 2f6kA 136 :VLERVYQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19778 1ecrA expands to /projects/compbio/data/pdb/1ecr.pdb.gz 1ecrA:# 1ecrA.73.19 read from T0506.t2k.many.frag # adding 1ecrA to template set # found chain 1ecrA in template set T0506 73 :GLTLHARNM 1ecrA 20 :ELAIFAAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19779 1tv8A expands to /projects/compbio/data/pdb/1tv8.pdb.gz 1tv8A:# 1tv8A.73.81 read from T0506.t2k.many.frag # adding 1tv8A to template set # found chain 1tv8A in template set T0506 73 :GLTLHARNM 1tv8A 82 :DLDVLIAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19780 # 1zr6A.73.114 read from T0506.t2k.many.frag # found chain 1zr6A in template set T0506 73 :GLTLHARNM 1zr6A 109 :RLGYTALEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19781 # 1c3cA.73.233 read from T0506.t2k.many.frag # found chain 1c3cA in training set T0506 73 :GLTLHARNM 1c3cA 235 :RIAVEIRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19782 # 1yx1A.73.112 read from T0506.t2k.many.frag # found chain 1yx1A in template set T0506 73 :GLTLHARNM 1yx1A 111 :DLAALGRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19783 # 1yrkA.73.89 read from T0506.t2k.many.frag # found chain 1yrkA in template set Warning: unaligning (T0506)G73 (1yrkA)G87 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 1yrkA 88 :VSVLAERC Number of specific fragments extracted= 1 number of extra gaps= 1 total=19784 # 2dpmA.73.240 read from T0506.t2k.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)G73 (2dpmA)S241 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 2dpmA 242 :SSALVEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=19785 # 1pb7A.73.189 read from T0506.t2k.many.frag # found chain 1pb7A in training set T0506 73 :GLTLHARNM 1pb7A 190 :ELSTMYRHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19786 1vkhA expands to /projects/compbio/data/pdb/1vkh.pdb.gz 1vkhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 315, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 317, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 1vkhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1vkhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1579, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 1vkhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1781, because occupancy 0.400 <= existing 0.600 in 1vkhA Skipped atom 1783, because occupancy 0.400 <= existing 0.600 in 1vkhA Skipped atom 2008, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2010, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2012, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2014, because occupancy 0.500 <= existing 0.500 in 1vkhA Skipped atom 2016, because occupancy 0.500 <= existing 0.500 in 1vkhA # 1vkhA.73.63 read from T0506.t2k.many.frag # adding 1vkhA to template set # found chain 1vkhA in template set T0506 73 :GLTLHARNM 1vkhA 52 :QLANTIKSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19787 # 1onwA.73.114 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 73 :GLTLHARNM 1onwA 115 :SLLAKTRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19788 2axpA expands to /projects/compbio/data/pdb/2axp.pdb.gz 2axpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2axpA.73.43 read from T0506.t2k.many.frag # adding 2axpA to template set # found chain 2axpA in template set T0506 73 :GLTLHARNM 2axpA 44 :KLFEHFNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19789 # 1qg8A.73.104 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 73 :GLTLHARNM 1qg8A 106 :RLLKMVREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19790 # 1vl7A.74.65 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 74 :LTLHARNME 1vl7A 54 :LAVHTKNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19791 # 1xhnA.74.73 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 74 :LTLHARNME 1xhnA 74 :LQLSVSNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19792 # 1ty9A.74.91 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 74 :LTLHARNME 1ty9A 92 :GSQKGRELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19793 # 1flmA.74.50 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 75 :TLHARNME 1flmA 52 :HKTEANVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19794 # 2f06A.74.54 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 74 :LTLHARNME 2f06A 52 :PDKAYKALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19795 # 2ex0A.74.117 read from T0506.t2k.many.frag # found chain 2ex0A in template set T0506 74 :LTLHARNME 2ex0A 142 :GSMEYVDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19796 # 1ri7A.74.99 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 74 :LTLHARNME 1ri7A 100 :YSEVASNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19797 # 2cfeA.74.132 read from T0506.t2k.many.frag # found chain 2cfeA in template set T0506 74 :LTLHARNME 2cfeA 133 :GMNVVKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19798 # 2anuA.74.133 read from T0506.t2k.many.frag # found chain 2anuA in template set T0506 74 :LTLHARNME 2anuA 122 :VEEIVEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19799 # 1ecrA.74.20 read from T0506.t2k.many.frag # found chain 1ecrA in template set T0506 74 :LTLHARNME 1ecrA 21 :LAIFAAHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19800 # 2asfA.74.57 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 75 :TLHARNME 2asfA 59 :SQKAVNAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19801 # 1qg8A.74.105 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 74 :LTLHARNME 1qg8A 107 :LLKMVRELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19802 # 1atg.74.55 read from T0506.t2k.many.frag # found chain 1atg in training set T0506 74 :LTLHARNME 1atg 57 :DEKSPEKLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19803 # 1yx1A.74.113 read from T0506.t2k.many.frag # found chain 1yx1A in template set T0506 74 :LTLHARNME 1yx1A 112 :LAALGRRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19804 # 2btoA.74.291 read from T0506.t2k.many.frag # found chain 2btoA in template set T0506 74 :LTLHARNME 2btoA 292 :IEEMIKSLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19805 # 1b43A.74.60 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 74 :LTLHARNME 1b43A 60 :LFYRTINLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19806 # 1xg4A.74.95 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 74 :LTLHARNME 1xg4A 97 :VARTVKSMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19807 # 1n9eA.74.104 read from T0506.t2k.many.frag # found chain 1n9eA in training set T0506 74 :LTLHARNME 1n9eA 105 :KTEALTYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19808 # 1tv8A.74.82 read from T0506.t2k.many.frag # found chain 1tv8A in template set T0506 74 :LTLHARNME 1tv8A 83 :LDVLIAKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19809 # 1zr6A.74.115 read from T0506.t2k.many.frag # found chain 1zr6A in template set T0506 74 :LTLHARNME 1zr6A 110 :LGYTALELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19810 # 1c3cA.74.234 read from T0506.t2k.many.frag # found chain 1c3cA in training set T0506 74 :LTLHARNME 1c3cA 236 :IAVEIRHLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19811 # 1no7A.74.381 read from T0506.t2k.many.frag # found chain 1no7A in template set T0506 74 :LTLHARNME 1no7A 832 :FDRVYATLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19812 # 1zx0A.74.70 read from T0506.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0506)T75 (1zx0A)A72 because L (left) conformation "forbidden" or filtered. T0506 74 :L 1zx0A 71 :M T0506 76 :LHARNME 1zx0A 73 :IAASKVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=19814 # 1pb7A.74.190 read from T0506.t2k.many.frag # found chain 1pb7A in training set T0506 74 :LTLHARNME 1pb7A 191 :LSTMYRHME Number of specific fragments extracted= 1 number of extra gaps= 0 total=19815 # 2f6kA.74.136 read from T0506.t2k.many.frag # found chain 2f6kA in template set T0506 74 :LTLHARNME 2f6kA 137 :LERVYQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19816 # 1qd1A.74.18 read from T0506.t2k.many.frag # found chain 1qd1A in training set T0506 74 :LTLHARNME 1qd1A 20 :IDAISRAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19817 2bycA expands to /projects/compbio/data/pdb/2byc.pdb.gz 2bycA:Skipped atom 57, because occupancy 0.300 <= existing 0.700 in 2bycA Skipped atom 59, because occupancy 0.300 <= existing 0.700 in 2bycA # 2bycA.74.60 read from T0506.t2k.many.frag # adding 2bycA to template set # found chain 2bycA in template set T0506 74 :LTLHARNME 2bycA 60 :CDELFRLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19818 1r0vA expands to /projects/compbio/data/pdb/1r0v.pdb.gz 1r0vA:# 1r0vA.74.103 read from T0506.t2k.many.frag # adding 1r0vA to template set # found chain 1r0vA in template set T0506 74 :LTLHARNME 1r0vA 104 :MEEIAEKAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19819 # 1byi.74.97 read from T0506.t2k.many.frag # found chain 1byi in training set T0506 74 :LTLHARNME 1byi 98 :MSAGLRALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19820 1ex2A expands to /projects/compbio/data/pdb/1ex2.pdb.gz 1ex2A:# 1ex2A.74.88 read from T0506.t2k.many.frag # adding 1ex2A to template set # found chain 1ex2A in template set T0506 74 :LTLHARNME 1ex2A 89 :AASMLRRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19821 # 1vl7A.75.66 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 75 :TLHARNMET 1vl7A 55 :AVHTKNIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19822 # 1xhnA.75.74 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 75 :TLHARNMET 1xhnA 75 :QLSVSNLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19823 # 1ty9A.75.92 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 75 :TLHARNMET 1ty9A 93 :SQKGRELLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19824 # 1flmA.75.51 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 75 :TLHARNMET 1flmA 52 :HKTEANVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19825 # 1ri7A.75.100 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 75 :TLHARNMET 1ri7A 101 :SEVASNLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19826 # 2ex0A.75.118 read from T0506.t2k.many.frag # found chain 2ex0A in template set T0506 75 :TLHARNMET 2ex0A 143 :SMEYVDLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19827 # 2f06A.75.55 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 75 :TLHARNMET 2f06A 53 :DKAYKALKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19828 # 2anuA.75.134 read from T0506.t2k.many.frag # found chain 2anuA in template set T0506 75 :TLHARNMET 2anuA 123 :EEIVEKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19829 # 2cfeA.75.133 read from T0506.t2k.many.frag # found chain 2cfeA in template set T0506 75 :TLHARNMET 2cfeA 134 :MNVVKAIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19830 # 1c3cA.75.235 read from T0506.t2k.many.frag # found chain 1c3cA in training set T0506 75 :TLHARNMET 1c3cA 237 :AVEIRHLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19831 # 1qg8A.75.106 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 75 :TLHARNMET 1qg8A 108 :LKMVRELDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19832 # 1xg4A.75.96 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 75 :TLHARNMET 1xg4A 98 :ARTVKSMIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19833 # 1ecrA.75.21 read from T0506.t2k.many.frag # found chain 1ecrA in template set T0506 75 :TLHARNMET 1ecrA 22 :AIFAAHLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19834 # 1b43A.75.61 read from T0506.t2k.many.frag # found chain 1b43A in template set T0506 75 :TLHARNMET 1b43A 61 :FYRTINLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=19835 # 2asfA.75.58 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 75 :TLHARNMET 2asfA 59 :SQKAVNADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19836 # 1zr6A.75.116 read from T0506.t2k.many.frag # found chain 1zr6A in template set T0506 75 :TLHARNMET 1zr6A 111 :GYTALELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19837 # 1yx1A.75.114 read from T0506.t2k.many.frag # found chain 1yx1A in template set T0506 75 :TLHARNMET 1yx1A 113 :AALGRRLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19838 # 2btoA.75.292 read from T0506.t2k.many.frag # found chain 2btoA in template set T0506 75 :TLHARNMET 2btoA 293 :EEMIKSLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19839 # 1vkhA.75.65 read from T0506.t2k.many.frag # found chain 1vkhA in template set T0506 75 :TLHARNMET 1vkhA 54 :ANTIKSMDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19840 # 1tv8A.75.83 read from T0506.t2k.many.frag # found chain 1tv8A in template set T0506 75 :TLHARNMET 1tv8A 84 :DVLIAKLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19841 # 1qd1A.75.19 read from T0506.t2k.many.frag # found chain 1qd1A in training set T0506 75 :TLHARNMET 1qd1A 21 :DAISRAVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19842 # 1atg.75.56 read from T0506.t2k.many.frag # found chain 1atg in training set T0506 75 :TLHARNMET 1atg 58 :EKSPEKLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19843 # 1ex2A.75.89 read from T0506.t2k.many.frag # found chain 1ex2A in template set Warning: unaligning (T0506)T83 (1ex2A)G98 because L (left) conformation "forbidden" or filtered. T0506 75 :TLHARNME 1ex2A 90 :ASMLRRLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19844 # 1byi.75.98 read from T0506.t2k.many.frag # found chain 1byi in training set T0506 75 :TLHARNMET 1byi 99 :SAGLRALEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19845 # 2bycA.75.61 read from T0506.t2k.many.frag # found chain 2bycA in template set T0506 75 :TLHARNMET 2bycA 61 :DELFRLISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19846 # 1r0vA.75.104 read from T0506.t2k.many.frag # found chain 1r0vA in template set T0506 75 :TLHARNMET 1r0vA 105 :EEIAEKARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19847 # 1pb7A.75.191 read from T0506.t2k.many.frag # found chain 1pb7A in training set T0506 75 :TLHARNMET 1pb7A 192 :STMYRHMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19848 # 1v4vA.75.154 read from T0506.t2k.many.frag # found chain 1v4vA in training set T0506 75 :TLHARNMET 1v4vA 155 :PLAKANLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19849 1tueB expands to /projects/compbio/data/pdb/1tue.pdb.gz 1tueB:# 1tueB.75.82 read from T0506.t2k.many.frag # adding 1tueB to template set # found chain 1tueB in template set T0506 75 :TLHARNMET 1tueB 80 :QMALQGLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19850 1f06A expands to /projects/compbio/data/pdb/1f06.pdb.gz 1f06A:# 1f06A.75.149 read from T0506.t2k.many.frag # adding 1f06A to template set # found chain 1f06A in template set T0506 75 :TLHARNMET 1f06A 150 :QGHSDALRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19851 # 1ty9A.76.93 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 76 :LHARNMETD 1ty9A 94 :QKGRELLHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19852 # 1vl7A.76.67 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D84 (1vl7A)N64 because D (zeta) conformation "forbidden" or filtered. T0506 76 :LHARNMET 1vl7A 56 :VHTKNIEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19853 # 1xhnA.76.75 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 76 :LHARNMETD 1xhnA 76 :LSVSNLQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19854 # 1flmA.76.52 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 76 :LHARNMETD 1flmA 53 :KTEANVARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19855 # 1ri7A.76.101 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 76 :LHARNMETD 1ri7A 102 :EVASNLAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=19856 2bu3A expands to /projects/compbio/data/pdb/2bu3.pdb.gz 2bu3A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1049, because occupancy 0.500 <= existing 0.500 in 2bu3A Skipped atom 1051, because occupancy 0.500 <= existing 0.500 in 2bu3A Skipped atom 1053, because occupancy 0.500 <= existing 0.500 in 2bu3A Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 2bu3A Skipped atom 1057, because occupancy 0.500 <= existing 0.500 in 2bu3A Skipped atom 1059, because occupancy 0.500 <= existing 0.500 in 2bu3A Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 2bu3A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bu3A.76.165 read from T0506.t2k.many.frag # adding 2bu3A to template set # found chain 2bu3A in template set T0506 76 :LHARNMETD 2bu3A 155 :QVAENLKQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19857 # 1ecrA.76.22 read from T0506.t2k.many.frag # found chain 1ecrA in template set T0506 76 :LHARNMETD 1ecrA 23 :IFAAHLEQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19858 # 2anuA.76.135 read from T0506.t2k.many.frag # found chain 2anuA in template set T0506 76 :LHARNMETD 2anuA 124 :EIVEKLKEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19859 # 2f06A.76.56 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 76 :LHARNMETD 2f06A 54 :KAYKALKDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19860 # 1qg8A.76.107 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 76 :LHARNMETD 1qg8A 109 :KMVRELDTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19861 # 1qd1A.76.20 read from T0506.t2k.many.frag # found chain 1qd1A in training set T0506 76 :LHARNMETD 1qd1A 22 :AISRAVAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19862 # 1ualA.76.116 read from T0506.t2k.many.frag # found chain 1ualA in training set T0506 76 :LHARNMETD 1ualA 97 :GGVTELAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19863 # 2bycA.76.62 read from T0506.t2k.many.frag # found chain 2bycA in template set T0506 76 :LHARNMETD 2bycA 62 :ELFRLISAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19864 # 2ex0A.76.119 read from T0506.t2k.many.frag # found chain 2ex0A in template set T0506 76 :LHARNMETD 2ex0A 144 :MEYVDLEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19865 # 1xg4A.76.97 read from T0506.t2k.many.frag # found chain 1xg4A in training set T0506 76 :LHARNMETD 1xg4A 99 :RTVKSMIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19866 # 2cfeA.76.134 read from T0506.t2k.many.frag # found chain 2cfeA in template set T0506 76 :LHARNMETD 2cfeA 135 :NVVKAIEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19867 # 1r0vA.76.105 read from T0506.t2k.many.frag # found chain 1r0vA in template set Warning: unaligning (T0506)T83 (1r0vA)N113 because L (left) conformation "forbidden" or filtered. T0506 76 :LHARNME 1r0vA 106 :EIAEKAR T0506 84 :D 1r0vA 114 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=19869 # 1c3cA.76.236 read from T0506.t2k.many.frag # found chain 1c3cA in training set T0506 76 :LHARNMETD 1c3cA 238 :VEIRHLQRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19870 # 1yx1A.76.115 read from T0506.t2k.many.frag # found chain 1yx1A in template set T0506 76 :LHARNMETD 1yx1A 114 :ALGRRLARH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19871 # 1f74A.76.148 read from T0506.t2k.many.frag # found chain 1f74A in training set T0506 76 :LHARNMETD 1f74A 149 :EQFGELYKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19872 # 1ex2A.76.90 read from T0506.t2k.many.frag # found chain 1ex2A in template set Warning: unaligning (T0506)T83 (1ex2A)G98 because L (left) conformation "forbidden" or filtered. T0506 76 :LHARNME 1ex2A 91 :SMLRRLS T0506 84 :D 1ex2A 99 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=19874 # 1tueB.76.83 read from T0506.t2k.many.frag # found chain 1tueB in template set T0506 76 :LHARNMETD 1tueB 81 :MALQGLAQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19875 # 1f06A.76.150 read from T0506.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0506)D84 (1f06A)I159 because P (beta_P) conformation "forbidden" or filtered. T0506 76 :LHARNMET 1f06A 151 :GHSDALRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19876 # 1zr6A.76.117 read from T0506.t2k.many.frag # found chain 1zr6A in template set T0506 76 :LHARNMETD 1zr6A 112 :YTALELLDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19877 1l1eA expands to /projects/compbio/data/pdb/1l1e.pdb.gz 1l1eA:# 1l1eA.76.152 read from T0506.t2k.many.frag # adding 1l1eA to template set # found chain 1l1eA in template set T0506 76 :LHARNMETD 1l1eA 153 :VTHRTLPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=19878 # 1mla.76.144 read from T0506.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0506)D84 (1mla)G153 because T (delta_L) conformation "forbidden" or filtered. T0506 76 :LHARNMET 1mla 145 :KACEEAAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19879 # 1zx0A.76.72 read from T0506.t2k.many.frag # found chain 1zx0A in template set Warning: unaligning (T0506)D84 (1zx0A)A81 because P (beta_P) conformation "forbidden" or filtered. T0506 76 :LHARNMET 1zx0A 73 :IAASKVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19880 # 1pb7A.76.192 read from T0506.t2k.many.frag # found chain 1pb7A in training set T0506 76 :LHARNMETD 1pb7A 193 :TMYRHMEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=19881 # 1tv8A.76.84 read from T0506.t2k.many.frag # found chain 1tv8A in template set T0506 76 :LHARNMETD 1tv8A 85 :VLIAKLNQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19882 # 1atg.76.57 read from T0506.t2k.many.frag # found chain 1atg in training set T0506 76 :LHARNMETD 1atg 59 :KSPEKLDNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19883 # 1xhnA.77.76 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 77 :HARNMETDA 1xhnA 77 :SVSNLQENP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19884 # 1vl7A.77.68 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)H77 (1vl7A)H57 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)D84 (1vl7A)N64 because D (zeta) conformation "forbidden" or filtered. T0506 78 :ARNMET 1vl7A 58 :TKNIEA T0506 85 :A 1vl7A 65 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=19886 # 1ty9A.77.94 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 77 :HARNMETDA 1ty9A 95 :KGRELLHNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19887 # 1ri7A.77.102 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 77 :HARNMETDA 1ri7A 103 :VASNLAKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19888 # 1flmA.77.53 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)A85 (1flmA)E62 because G (3-10) conformation "forbidden" or filtered. T0506 77 :HARNMETD 1flmA 54 :TEANVARD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19889 # 2bu3A.77.166 read from T0506.t2k.many.frag # found chain 2bu3A in template set T0506 77 :HARNMETDA 2bu3A 156 :VAENLKQDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19890 # 1ecrA.77.23 read from T0506.t2k.many.frag # found chain 1ecrA in template set T0506 77 :HARNMETDA 1ecrA 24 :FAAHLEQHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19891 # 1ualA.77.117 read from T0506.t2k.many.frag # found chain 1ualA in training set T0506 77 :HARNMETDA 1ualA 98 :GVTELAQNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=19892 # 1zr6A.77.118 read from T0506.t2k.many.frag # found chain 1zr6A in template set T0506 77 :HARNMETDA 1zr6A 113 :TALELLDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19893 # 2anuA.77.136 read from T0506.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0506)A85 (2anuA)N133 because L (left) conformation "forbidden" or filtered. T0506 77 :HARNMETD 2anuA 125 :IVEKLKEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=19894 # 2f06A.77.57 read from T0506.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)A85 (2f06A)H63 because L (left) conformation "forbidden" or filtered. T0506 77 :HARNMETD 2f06A 55 :AYKALKDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=19895 # 1l1eA.77.153 read from T0506.t2k.many.frag # found chain 1l1eA in template set Warning: unaligning (T0506)E82 (1l1eA)P159 because P (beta_P) conformation "forbidden" or filtered. T0506 77 :HARNM 1l1eA 154 :THRTL T0506 83 :TDA 1l1eA 160 :ADG Number of specific fragments extracted= 2 number of extra gaps= 1 total=19897 # 1qg8A.77.108 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 77 :HARNMETDA 1qg8A 110 :MVRELDTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19898 # 1qd1A.77.21 read from T0506.t2k.many.frag # found chain 1qd1A in training set T0506 77 :HARNMETDA 1qd1A 23 :ISRAVAQTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19899 # 1f74A.77.149 read from T0506.t2k.many.frag # found chain 1f74A in training set T0506 77 :HARNMETDA 1f74A 150 :QFGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19900 # 2furA.77.68 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)D84 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 77 :HARNMET 2furA 68 :IYGILKT T0506 85 :A 2furA 76 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=19902 # 1mla.77.145 read from T0506.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0506)T83 (1mla)E152 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D84 (1mla)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1mla)Q154 because Y (epsilon') conformation "forbidden" or filtered. T0506 77 :HARNME 1mla 146 :ACEEAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19903 # 1tueB.77.84 read from T0506.t2k.many.frag # found chain 1tueB in template set T0506 77 :HARNMETDA 1tueB 82 :ALQGLAQSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19904 # 1f06A.77.151 read from T0506.t2k.many.frag # found chain 1f06A in template set T0506 77 :HARNMETDA 1f06A 152 :HSDALRRIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19905 # 2ex0A.77.120 read from T0506.t2k.many.frag # found chain 2ex0A in template set T0506 77 :HARNMETDA 2ex0A 145 :EYVDLEKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19906 # 1c3cA.77.237 read from T0506.t2k.many.frag # found chain 1c3cA in training set T0506 77 :HARNMETDA 1c3cA 239 :EIRHLQRTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19907 # 2bycA.77.63 read from T0506.t2k.many.frag # found chain 2bycA in template set T0506 77 :HARNMETDA 2bycA 63 :LFRLISADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19908 # 1vkhA.77.67 read from T0506.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0506)A85 (1vkhA)S64 because L (left) conformation "forbidden" or filtered. T0506 77 :HARNMETD 1vkhA 56 :TIKSMDTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19909 # 1xg4A.77.98 read from T0506.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)A85 (1xg4A)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 77 :HARNMETD 1xg4A 100 :TVKSMIKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=19910 # 1v4vA.77.156 read from T0506.t2k.many.frag # found chain 1v4vA in training set Warning: unaligning (T0506)A85 (1v4vA)G165 because T (delta_L) conformation "forbidden" or filtered. T0506 77 :HARNMETD 1v4vA 157 :AKANLLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19911 # 1ex2A.77.91 read from T0506.t2k.many.frag # found chain 1ex2A in template set Warning: unaligning (T0506)T83 (1ex2A)G98 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D84 (1ex2A)R99 because Y (epsilon') conformation "forbidden" or filtered. T0506 77 :HARNME 1ex2A 92 :MLRRLS T0506 85 :A 1ex2A 100 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=19913 # 1yx1A.77.116 read from T0506.t2k.many.frag # found chain 1yx1A in template set T0506 77 :HARNMETDA 1yx1A 115 :LGRRLARHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=19914 # 1r0vA.77.106 read from T0506.t2k.many.frag # found chain 1r0vA in template set Warning: unaligning (T0506)T83 (1r0vA)N113 because L (left) conformation "forbidden" or filtered. T0506 77 :HARNME 1r0vA 107 :IAEKAR T0506 84 :DA 1r0vA 114 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=19916 # 1fo8A.77.122 read from T0506.t2k.many.frag # found chain 1fo8A in training set T0506 77 :HARNMETDA 1fo8A 227 :TYPLLKADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19917 # 1zx0A.77.73 read from T0506.t2k.many.frag # found chain 1zx0A in template set T0506 77 :HARNMETDA 1zx0A 74 :AASKVQEAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19918 # 1ty9A.78.95 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R86 (1ty9A)W104 because P (beta_P) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1ty9A 96 :GRELLHNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19919 # 1xhnA.78.77 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D84 (1xhnA)N84 because D (zeta) conformation "forbidden" or filtered. T0506 78 :ARNMET 1xhnA 78 :VSNLQE T0506 85 :AR 1xhnA 85 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=19921 # 1vl7A.78.69 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A85 (1vl7A)P65 because G (3-10) conformation "forbidden" or filtered. T0506 78 :ARNMETD 1vl7A 58 :TKNIEAN T0506 86 :R 1vl7A 66 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=19923 # 1flmA.78.54 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 78 :ARNMETDAR 1flmA 55 :EANVARDER Number of specific fragments extracted= 1 number of extra gaps= 0 total=19924 # 1ri7A.78.103 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 78 :ARNMETDAR 1ri7A 104 :ASNLAKYPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19925 # 2bu3A.78.167 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)A85 (2bu3A)G164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (2bu3A)N165 because Y (epsilon') conformation "forbidden" or filtered. T0506 78 :ARNMETD 2bu3A 157 :AENLKQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=19926 # 1qd1A.78.22 read from T0506.t2k.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)R86 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1qd1A 24 :SRAVAQTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19927 # 1f74A.78.150 read from T0506.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)R86 (1f74A)K159 because G (3-10) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1f74A 151 :FGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19928 # 1ecrA.78.24 read from T0506.t2k.many.frag # found chain 1ecrA in template set T0506 78 :ARNMETDAR 1ecrA 25 :AAHLEQHKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19929 # 1fo8A.78.123 read from T0506.t2k.many.frag # found chain 1fo8A in training set T0506 78 :ARNMETDAR 1fo8A 228 :YPLLKADPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19930 # 2bycA.78.64 read from T0506.t2k.many.frag # found chain 2bycA in template set T0506 78 :ARNMETDAR 2bycA 64 :FRLISADPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19931 # 1ualA.78.118 read from T0506.t2k.many.frag # found chain 1ualA in training set T0506 78 :ARNMETDAR 1ualA 99 :VTELAQNQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19932 # 1qv9A.78.83 read from T0506.t2k.many.frag # found chain 1qv9A in training set Warning: unaligning (T0506)R86 (1qv9A)Y92 because P (beta_P) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1qv9A 84 :REMLADSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=19933 # 2furA.78.69 read from T0506.t2k.many.frag # found chain 2furA in template set T0506 78 :ARNMETDAR 2furA 69 :YGILKTGQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19934 # 1f06A.78.152 read from T0506.t2k.many.frag # found chain 1f06A in template set Warning: unaligning (T0506)R86 (1f06A)G161 because T (delta_L) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1f06A 153 :SDALRRIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19935 # 1zr6A.78.119 read from T0506.t2k.many.frag # found chain 1zr6A in template set T0506 78 :ARNMETDAR 1zr6A 114 :ALELLDQGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=19936 # 1l1eA.78.154 read from T0506.t2k.many.frag # found chain 1l1eA in template set T0506 78 :ARNMETDAR 1l1eA 155 :HRTLPADGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19937 # 1mla.78.146 read from T0506.t2k.many.frag # found chain 1mla in training set T0506 78 :ARNMETDAR 1mla 147 :CEEAAEGQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19938 # 2anuA.78.137 read from T0506.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0506)A85 (2anuA)N133 because L (left) conformation "forbidden" or filtered. T0506 78 :ARNMETD 2anuA 126 :VEKLKEQ T0506 86 :R 2anuA 134 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=19940 # 1qg8A.78.109 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 78 :ARNMETDAR 1qg8A 111 :VRELDTHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=19941 1jfrA expands to /projects/compbio/data/pdb/1jfr.pdb.gz 1jfrA:# 1jfrA.78.73 read from T0506.t2k.many.frag # adding 1jfrA to template set # found chain 1jfrA in template set T0506 78 :ARNMETDAR 1jfrA 74 :GPRLASQGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19942 2b8eA expands to /projects/compbio/data/pdb/2b8e.pdb.gz 2b8eA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b8eA.78.114 read from T0506.t2k.many.frag # adding 2b8eA to template set # found chain 2b8eA in template set T0506 78 :ARNMETDAR 2b8eA 521 :LEKLEREAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19943 # 1e4cP.78.139 read from T0506.t2k.many.frag # found chain 1e4cP in training set T0506 78 :ARNMETDAR 1e4cP 140 :VALALKNRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19944 # 2f06A.78.58 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 78 :ARNMETDAR 2f06A 56 :YKALKDNHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=19945 # 1xg4A.78.99 read from T0506.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)R86 (1xg4A)A109 because P (beta_P) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1xg4A 101 :VKSMIKAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=19946 # 1nwaA.78.38 read from T0506.t2k.many.frag # found chain 1nwaA in training set Warning: unaligning (T0506)R86 (1nwaA)G26 because T (delta_L) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1nwaA 18 :QDLIRNQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=19947 # 1yx1A.78.117 read from T0506.t2k.many.frag # found chain 1yx1A in template set Warning: unaligning (T0506)D84 (1yx1A)H122 because E (beta_S) conformation "forbidden" or filtered. T0506 78 :ARNMET 1yx1A 116 :GRRLAR T0506 85 :AR 1yx1A 123 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19949 # 1sr9A.78.154 read from T0506.t2k.many.frag # found chain 1sr9A in template set T0506 78 :ARNMETDAR 1sr9A 155 :FQACSGAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=19950 1rloA expands to /projects/compbio/data/pdb/1rlo.pdb.gz 1rloA:Bad short name: BE for alphabet: pdb_atoms Bad short name: F1 for alphabet: pdb_atoms Bad short name: F2 for alphabet: pdb_atoms Bad short name: F3 for alphabet: pdb_atoms # 1rloA.78.92 read from T0506.t2k.many.frag # adding 1rloA to template set # found chain 1rloA in template set Warning: unaligning (T0506)R86 (1rloA)Q101 because G (3-10) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1rloA 93 :IGELLKDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=19951 # 1ex2A.78.92 read from T0506.t2k.many.frag # found chain 1ex2A in template set Warning: unaligning (T0506)R86 (1ex2A)H101 because Y (epsilon') conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1ex2A 93 :LRRLSGRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=19952 # 1ty9A.79.96 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 79 :RNMETDARI 1ty9A 97 :RELLHNPWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19953 # 1flmA.79.55 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R86 (1flmA)R63 because P (beta_P) conformation "forbidden" or filtered. T0506 79 :RNMETDA 1flmA 56 :ANVARDE T0506 87 :I 1flmA 64 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19955 # 1vl7A.79.70 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)R86 (1vl7A)L66 because P (beta_P) conformation "forbidden" or filtered. T0506 79 :RNMETDA 1vl7A 59 :KNIEANP T0506 87 :I 1vl7A 67 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=19957 # 1xhnA.79.78 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)I87 (1xhnA)A87 because Y (epsilon') conformation "forbidden" or filtered. T0506 79 :RNMETDAR 1xhnA 79 :SNLQENPY Number of specific fragments extracted= 1 number of extra gaps= 1 total=19958 # 1fo8A.79.124 read from T0506.t2k.many.frag # found chain 1fo8A in training set T0506 79 :RNMETDARI 1fo8A 229 :PLLKADPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19959 # 1qd1A.79.23 read from T0506.t2k.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)A85 (1qd1A)P31 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0506 79 :RNMETD 1qd1A 25 :RAVAQT T0506 87 :I 1qd1A 33 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=19961 # 1ri7A.79.104 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 79 :RNMETDARI 1ri7A 105 :SNLAKYPEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19962 # 1f74A.79.151 read from T0506.t2k.many.frag # found chain 1f74A in training set T0506 79 :RNMETDARI 1f74A 152 :GELYKNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19963 # 2bu3A.79.168 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)A85 (2bu3A)G164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (2bu3A)N165 because Y (epsilon') conformation "forbidden" or filtered. T0506 79 :RNMETD 2bu3A 158 :ENLKQD T0506 87 :I 2bu3A 166 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=19965 # 1qv9A.79.84 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 79 :RNMETDARI 1qv9A 85 :EMLADSEYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=19966 # 2bycA.79.65 read from T0506.t2k.many.frag # found chain 2bycA in template set Warning: unaligning (T0506)I87 (2bycA)H73 because Y (epsilon') conformation "forbidden" or filtered. T0506 79 :RNMETDAR 2bycA 65 :RLISADPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=19967 # 2furA.79.70 read from T0506.t2k.many.frag # found chain 2furA in template set T0506 79 :RNMETDARI 2furA 70 :GILKTGQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=19968 # 1ecrA.79.25 read from T0506.t2k.many.frag # found chain 1ecrA in template set Warning: unaligning (T0506)D84 (1ecrA)H31 because E (beta_S) conformation "forbidden" or filtered. T0506 79 :RNMET 1ecrA 26 :AHLEQ T0506 85 :ARI 1ecrA 32 :KLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19970 # 1zr6A.79.120 read from T0506.t2k.many.frag # found chain 1zr6A in template set Warning: unaligning (T0506)R86 (1zr6A)N122 because L (left) conformation "forbidden" or filtered. T0506 79 :RNMETDA 1zr6A 115 :LELLDQG T0506 87 :I 1zr6A 123 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=19972 # 1e4cP.79.140 read from T0506.t2k.many.frag # found chain 1e4cP in training set T0506 79 :RNMETDARI 1e4cP 141 :ALALKNRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=19973 # 1ualA.79.119 read from T0506.t2k.many.frag # found chain 1ualA in training set T0506 79 :RNMETDARI 1ualA 100 :TELAQNQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19974 # 1jfrA.79.74 read from T0506.t2k.many.frag # found chain 1jfrA in template set T0506 79 :RNMETDARI 1jfrA 75 :PRLASQGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19975 1e4fT expands to /projects/compbio/data/pdb/1e4f.pdb.gz 1e4fT:# 1e4fT.79.119 read from T0506.t2k.many.frag # adding 1e4fT to template set # found chain 1e4fT in template set T0506 79 :RNMETDARI 1e4fT 120 :EKLKENGKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19976 1v84A expands to /projects/compbio/data/pdb/1v84.pdb.gz 1v84A:# 1v84A.79.124 read from T0506.t2k.many.frag # adding 1v84A to template set # found chain 1v84A in template set T0506 79 :RNMETDARI 1v84A 206 :EEMRSTRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19977 # 1mla.79.147 read from T0506.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0506)D84 (1mla)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1mla)Q154 because Y (epsilon') conformation "forbidden" or filtered. T0506 79 :RNMET 1mla 148 :EEAAE T0506 86 :RI 1mla 155 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=19979 # 1l1eA.79.155 read from T0506.t2k.many.frag # found chain 1l1eA in template set T0506 79 :RNMETDARI 1l1eA 156 :RTLPADGKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=19980 # 1qg8A.79.110 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 79 :RNMETDARI 1qg8A 112 :RELDTHPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=19981 # 1xg4A.79.100 read from T0506.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)A85 (1xg4A)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 79 :RNMETD 1xg4A 102 :KSMIKA T0506 86 :RI 1xg4A 109 :AA Number of specific fragments extracted= 2 number of extra gaps= 1 total=19983 # 2anuA.79.138 read from T0506.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0506)A85 (2anuA)N133 because L (left) conformation "forbidden" or filtered. T0506 79 :RNMETD 2anuA 127 :EKLKEQ T0506 86 :RI 2anuA 134 :AL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19985 # 1r26A.79.30 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 79 :RNMETDARI 1r26A 12 :RNIMSEDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=19986 # 1gkpA.79.137 read from T0506.t2k.many.frag # found chain 1gkpA in training set Warning: unaligning (T0506)A85 (1gkpA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)I87 (1gkpA)S147 because G (3-10) conformation "forbidden" or filtered. T0506 79 :RNMETD 1gkpA 139 :REIVAD T0506 86 :R 1gkpA 146 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=19988 # 2b8eA.79.115 read from T0506.t2k.many.frag # found chain 2b8eA in template set T0506 79 :RNMETDARI 2b8eA 522 :EKLEREAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19989 1jalA expands to /projects/compbio/data/pdb/1jal.pdb.gz 1jalA:# 1jalA.79.91 read from T0506.t2k.many.frag # adding 1jalA to template set # found chain 1jalA in template set Warning: unaligning (T0506)R86 (1jalA)A99 because Y (epsilon') conformation "forbidden" or filtered. T0506 79 :RNMETDA 1jalA 92 :ANIRETD T0506 87 :I 1jalA 100 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=19991 # 1rp0A.79.126 read from T0506.t2k.many.frag # found chain 1rp0A in training set T0506 79 :RNMETDARI 1rp0A 127 :SKLLARPNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19992 1q42A expands to /projects/compbio/data/pdb/1q42.pdb.gz 1q42A:# 1q42A.79.92 read from T0506.t2k.many.frag # adding 1q42A to template set # found chain 1q42A in template set T0506 79 :RNMETDARI 1q42A 73 :KKWLQTPLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19993 # 1ty9A.80.97 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 80 :NMETDARIS 1ty9A 98 :ELLHNPWAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=19994 # 1vl7A.80.71 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D84 (1vl7A)N64 because D (zeta) conformation "forbidden" or filtered. T0506 80 :NMET 1vl7A 60 :NIEA T0506 85 :ARIS 1vl7A 65 :PLVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=19996 # 1xhnA.80.79 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 80 :NMETDARIS 1xhnA 80 :NLQENPYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=19997 # 1flmA.80.56 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)D84 (1flmA)D61 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1flmA)E62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1flmA)R63 because P (beta_P) conformation "forbidden" or filtered. T0506 80 :NMET 1flmA 57 :NVAR T0506 87 :IS 1flmA 64 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=19999 # 1fo8A.80.125 read from T0506.t2k.many.frag # found chain 1fo8A in training set T0506 80 :NMETDARIS 1fo8A 230 :LLKADPSLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20000 # 1qd1A.80.24 read from T0506.t2k.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)R86 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0506 80 :NMETDA 1qd1A 26 :AVAQTP T0506 87 :IS 1qd1A 33 :CV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20002 # 1f74A.80.152 read from T0506.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)D84 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. T0506 80 :NMET 1f74A 153 :ELYK T0506 85 :ARIS 1f74A 158 :PKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20004 # 2bu3A.80.169 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)A85 (2bu3A)G164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (2bu3A)N165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I87 (2bu3A)F166 because Y (epsilon') conformation "forbidden" or filtered. T0506 80 :NMETD 2bu3A 159 :NLKQD T0506 88 :S 2bu3A 167 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20006 # 1e4fT.80.120 read from T0506.t2k.many.frag # found chain 1e4fT in template set T0506 80 :NMETDARIS 1e4fT 121 :KLKENGKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20007 # 1ri7A.80.105 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 80 :NMETDARIS 1ri7A 106 :NLAKYPEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20008 # 1e4cP.80.141 read from T0506.t2k.many.frag # found chain 1e4cP in training set Warning: unaligning (T0506)A85 (1e4cP)R147 because E (beta_S) conformation "forbidden" or filtered. T0506 80 :NMETD 1e4cP 142 :LALKN T0506 86 :RIS 1e4cP 148 :KAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20010 # 1qv9A.80.85 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 80 :NMETDARIS 1qv9A 86 :MLADSEYPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20011 # 1zr6A.80.121 read from T0506.t2k.many.frag # found chain 1zr6A in template set T0506 80 :NMETDARIS 1zr6A 116 :ELLDQGNRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20012 # 2bycA.80.66 read from T0506.t2k.many.frag # found chain 2bycA in template set Warning: unaligning (T0506)R86 (2bycA)R72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I87 (2bycA)H73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (2bycA)Q74 because Y (epsilon') conformation "forbidden" or filtered. T0506 80 :NMETDA 2bycA 66 :LISADP Number of specific fragments extracted= 1 number of extra gaps= 1 total=20013 # 1jfrA.80.75 read from T0506.t2k.many.frag # found chain 1jfrA in template set Warning: unaligning (T0506)A85 (1jfrA)G81 because L (left) conformation "forbidden" or filtered. T0506 80 :NMETD 1jfrA 76 :RLASQ T0506 86 :RIS 1jfrA 82 :FVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20015 # 1mla.80.148 read from T0506.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0506)T83 (1mla)E152 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D84 (1mla)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1mla)Q154 because Y (epsilon') conformation "forbidden" or filtered. T0506 80 :NME 1mla 149 :EAA T0506 86 :RIS 1mla 155 :VVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20017 # 1gkpA.80.138 read from T0506.t2k.many.frag # found chain 1gkpA in training set Warning: unaligning (T0506)A85 (1gkpA)G145 because T (delta_L) conformation "forbidden" or filtered. T0506 80 :NMETD 1gkpA 140 :EIVAD T0506 86 :RIS 1gkpA 146 :ISS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20019 # 1v84A.80.125 read from T0506.t2k.many.frag # found chain 1v84A in template set T0506 80 :NMETDARIS 1v84A 207 :EMRSTRRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20020 # 2furA.80.71 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)D84 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 80 :NMET 2furA 71 :ILKT T0506 85 :ARIS 2furA 76 :QLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20022 # 2b8eA.80.116 read from T0506.t2k.many.frag # found chain 2b8eA in template set T0506 80 :NMETDARIS 2b8eA 523 :KLEREAKTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20023 # 1uarA.80.16 read from T0506.t2k.many.frag # found chain 1uarA in training set T0506 80 :NMETDARIS 1uarA 17 :EHLEDPKVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20024 # 1ecrA.80.26 read from T0506.t2k.many.frag # found chain 1ecrA in template set T0506 80 :NMETDARIS 1ecrA 27 :HLEQHKLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20025 # 1l1eA.80.156 read from T0506.t2k.many.frag # found chain 1l1eA in template set Warning: unaligning (T0506)E82 (1l1eA)P159 because P (beta_P) conformation "forbidden" or filtered. T0506 80 :NM 1l1eA 157 :TL T0506 83 :TDARIS 1l1eA 160 :ADGKML Number of specific fragments extracted= 2 number of extra gaps= 1 total=20027 # 1qg8A.80.111 read from T0506.t2k.many.frag # found chain 1qg8A in training set Warning: unaligning (T0506)D84 (1qg8A)H117 because D (zeta) conformation "forbidden" or filtered. T0506 80 :NMET 1qg8A 113 :ELDT T0506 85 :ARIS 1qg8A 118 :PEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20029 # 1rp0A.80.127 read from T0506.t2k.many.frag # found chain 1rp0A in training set Warning: unaligning (T0506)R86 (1rp0A)N134 because G (3-10) conformation "forbidden" or filtered. T0506 80 :NMETDA 1rp0A 128 :KLLARP T0506 87 :IS 1rp0A 135 :VK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20031 # 1ujpA.80.8 read from T0506.t2k.many.frag # found chain 1ujpA in training set Warning: unaligning (T0506)A85 (1ujpA)G14 because L (left) conformation "forbidden" or filtered. T0506 80 :NMETD 1ujpA 9 :KARSE T0506 86 :RIS 1ujpA 15 :RAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20033 # 2anuA.80.139 read from T0506.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0506)A85 (2anuA)N133 because L (left) conformation "forbidden" or filtered. T0506 80 :NMETD 2anuA 128 :KLKEQ T0506 86 :RIS 2anuA 134 :ALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20035 # 1xg4A.80.101 read from T0506.t2k.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)S88 (1xg4A)G111 because Y (epsilon') conformation "forbidden" or filtered. T0506 80 :NMETDARI 1xg4A 103 :SMIKAGAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20036 # 1q42A.80.93 read from T0506.t2k.many.frag # found chain 1q42A in template set T0506 80 :NMETDARIS 1q42A 74 :KWLQTPLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20037 # 1lc5A.80.200 read from T0506.t2k.many.frag # found chain 1lc5A in training set T0506 80 :NMETDARIS 1lc5A 201 :ALKDNPHIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20038 # 1xhnA.81.80 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)R86 (1xhnA)Y86 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :METDA 1xhnA 81 :LQENP T0506 87 :ISV 1xhnA 87 :ATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20040 # 1ty9A.81.98 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 81 :METDARISV 1ty9A 99 :LLHNPWASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20041 # 1vl7A.81.72 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)R86 (1vl7A)L66 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :METDA 1vl7A 61 :IEANP T0506 87 :ISV 1vl7A 67 :VNV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20043 # 1flmA.81.57 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R86 (1flmA)R63 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :METDA 1flmA 58 :VARDE T0506 87 :ISV 1flmA 64 :VLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=20045 # 1fo8A.81.126 read from T0506.t2k.many.frag # found chain 1fo8A in training set T0506 81 :METDARISV 1fo8A 231 :LKADPSLWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20046 # 2bu3A.81.170 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)R86 (2bu3A)N165 because Y (epsilon') conformation "forbidden" or filtered. T0506 81 :METDA 2bu3A 160 :LKQDG T0506 87 :ISV 2bu3A 166 :FVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20048 # 1qd1A.81.25 read from T0506.t2k.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)R86 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0506 81 :METDA 1qd1A 27 :VAQTP T0506 87 :ISV 1qd1A 33 :CVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20050 # 1f74A.81.153 read from T0506.t2k.many.frag # found chain 1f74A in training set T0506 81 :METDARISV 1f74A 154 :LYKNPKVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20051 # 1e4fT.81.121 read from T0506.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)A85 (1e4fT)G126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (1e4fT)P129 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :METD 1e4fT 122 :LKEN T0506 86 :RI 1e4fT 127 :KT T0506 89 :V 1e4fT 130 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20054 # 1lc5A.81.201 read from T0506.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0506)D84 (1lc5A)N205 because D (zeta) conformation "forbidden" or filtered. T0506 81 :MET 1lc5A 202 :LKD T0506 85 :ARISV 1lc5A 206 :PHIWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20056 # 1uarA.81.17 read from T0506.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)M81 (1uarA)H18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1uarA)K23 because G (3-10) conformation "forbidden" or filtered. T0506 82 :ETDA 1uarA 19 :LEDP T0506 87 :ISV 1uarA 24 :VRV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20058 # 1mla.81.149 read from T0506.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0506)T83 (1mla)E152 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D84 (1mla)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1mla)Q154 because Y (epsilon') conformation "forbidden" or filtered. T0506 81 :ME 1mla 150 :AA T0506 86 :RISV 1mla 155 :VVSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=20060 1t3yA expands to /projects/compbio/data/pdb/1t3y.pdb.gz 1t3yA:Skipped atom 430, because occupancy 0.440 <= existing 0.560 in 1t3yA Skipped atom 432, because occupancy 0.440 <= existing 0.560 in 1t3yA Skipped atom 545, because occupancy 0.290 <= existing 0.700 in 1t3yA Skipped atom 547, because occupancy 0.290 <= existing 0.700 in 1t3yA Skipped atom 549, because occupancy 0.290 <= existing 0.700 in 1t3yA # 1t3yA.81.50 read from T0506.t2k.many.frag # adding 1t3yA to template set # found chain 1t3yA in template set T0506 81 :METDARISV 1t3yA 52 :CTDDVRLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20061 # 1jfrA.81.76 read from T0506.t2k.many.frag # found chain 1jfrA in template set Warning: unaligning (T0506)A85 (1jfrA)G81 because L (left) conformation "forbidden" or filtered. T0506 81 :METD 1jfrA 77 :LASQ T0506 86 :RISV 1jfrA 82 :FVVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20063 # 1v84A.81.126 read from T0506.t2k.many.frag # found chain 1v84A in template set T0506 81 :METDARISV 1v84A 208 :MRSTRRVSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20064 # 1qv9A.81.86 read from T0506.t2k.many.frag # found chain 1qv9A in training set Warning: unaligning (T0506)R86 (1qv9A)Y92 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :METDA 1qv9A 87 :LADSE T0506 87 :ISV 1qv9A 93 :PAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20066 # 1e4cP.81.142 read from T0506.t2k.many.frag # found chain 1e4cP in training set Warning: unaligning (T0506)A85 (1e4cP)R147 because E (beta_S) conformation "forbidden" or filtered. T0506 81 :METD 1e4cP 143 :ALKN T0506 86 :RISV 1e4cP 148 :KATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20068 # 2furA.81.72 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)D84 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 81 :MET 2furA 72 :LKT T0506 85 :ARISV 2furA 76 :QLIAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20070 # 1nls.81.54 read from T0506.t2k.many.frag # found chain 1nls in training set T0506 81 :METDARISV 1nls 55 :NSVDKRLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20071 # 1gkpA.81.139 read from T0506.t2k.many.frag # found chain 1gkpA in training set Warning: unaligning (T0506)V89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gkpA)I151 T0506 81 :METDARIS 1gkpA 141 :IVADGISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20072 # 1ri7A.81.106 read from T0506.t2k.many.frag # found chain 1ri7A in template set T0506 81 :METDARISV 1ri7A 107 :LAKYPEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20073 # 1uscA.81.63 read from T0506.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)A85 (1uscA)R68 because L (left) conformation "forbidden" or filtered. T0506 81 :METD 1uscA 64 :LLKA T0506 86 :RISV 1uscA 69 :RFSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20075 1xqbA expands to /projects/compbio/data/pdb/1xqb.pdb.gz 1xqbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xqbA.81.50 read from T0506.t2k.many.frag # adding 1xqbA to template set # found chain 1xqbA in template set Warning: unaligning (T0506)D84 (1xqbA)F54 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :MET 1xqbA 51 :LEQ T0506 85 :ARISV 1xqbA 55 :SHLWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20077 # 2b8eA.81.117 read from T0506.t2k.many.frag # found chain 2b8eA in template set Warning: unaligning (T0506)A85 (2b8eA)A528 because L (left) conformation "forbidden" or filtered. T0506 81 :METD 2b8eA 524 :LERE T0506 86 :RISV 2b8eA 529 :KTAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20079 # 1r26A.81.32 read from T0506.t2k.many.frag # found chain 1r26A in training set Warning: unaligning (T0506)D84 (1r26A)E17 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :MET 1r26A 14 :IMS T0506 85 :ARISV 1r26A 18 :DILTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20081 # 1ujpA.81.9 read from T0506.t2k.many.frag # found chain 1ujpA in training set Warning: unaligning (T0506)A85 (1ujpA)G14 because L (left) conformation "forbidden" or filtered. T0506 81 :METD 1ujpA 10 :ARSE T0506 86 :RISV 1ujpA 15 :RAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20083 # 1vkhA.81.71 read from T0506.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0506)A85 (1vkhA)S64 because L (left) conformation "forbidden" or filtered. T0506 81 :METD 1vkhA 60 :MDTE T0506 86 :RISV 1vkhA 65 :TVCQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20085 # 1r6xA.81.94 read from T0506.t2k.many.frag # found chain 1r6xA in training set T0506 81 :METDARISV 1r6xA 96 :IKPDTRIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20086 # 1l1eA.81.157 read from T0506.t2k.many.frag # found chain 1l1eA in template set T0506 81 :METDARISV 1l1eA 158 :LPADGKMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20087 # 2anuA.81.140 read from T0506.t2k.many.frag # found chain 2anuA in template set Warning: unaligning (T0506)A85 (2anuA)N133 because L (left) conformation "forbidden" or filtered. T0506 81 :METD 2anuA 129 :LKEQ T0506 86 :RISV 2anuA 134 :ALVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20089 # 1xhnA.82.81 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 82 :ETDARISVT 1xhnA 82 :QENPYATLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20090 # 1ty9A.82.99 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 82 :ETDARISVT 1ty9A 100 :LHNPWASGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20091 # 1vl7A.82.73 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 82 :ETDARISVT 1vl7A 62 :EANPLVNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20092 # 2bu3A.82.171 read from T0506.t2k.many.frag # found chain 2bu3A in template set T0506 82 :ETDARISVT 2bu3A 161 :KQDGNFVIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20093 # 1lc5A.82.202 read from T0506.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0506)D84 (1lc5A)N205 because D (zeta) conformation "forbidden" or filtered. T0506 82 :ET 1lc5A 203 :KD T0506 85 :ARISVT 1lc5A 206 :PHIWVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20095 # 1f74A.82.154 read from T0506.t2k.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)V89 (1f74A)G162 because Y (epsilon') conformation "forbidden" or filtered. T0506 82 :ETDARIS 1f74A 155 :YKNPKVL T0506 90 :T 1f74A 163 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20097 # 1flmA.82.58 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 82 :ETDARISVT 1flmA 59 :ARDERVLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20098 # 1fo8A.82.127 read from T0506.t2k.many.frag # found chain 1fo8A in training set T0506 82 :ETDARISVT 1fo8A 232 :KADPSLWCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20099 # 1nls.82.55 read from T0506.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0506)A85 (1nls)K59 because L (left) conformation "forbidden" or filtered. T0506 82 :ETD 1nls 56 :SVD T0506 86 :RISVT 1nls 60 :RLSAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20101 # 1uarA.82.18 read from T0506.t2k.many.frag # found chain 1uarA in training set T0506 82 :ETDARISVT 1uarA 19 :LEDPKVRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20102 # 1qd1A.82.26 read from T0506.t2k.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)R86 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. T0506 82 :ETDA 1qd1A 28 :AQTP T0506 87 :ISVT 1qd1A 33 :CVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20104 # 1xqbA.82.51 read from T0506.t2k.many.frag # found chain 1xqbA in template set T0506 82 :ETDARISVT 1xqbA 52 :EQFSHLWLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20105 # 1e4fT.82.122 read from T0506.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)A85 (1e4fT)G126 because L (left) conformation "forbidden" or filtered. T0506 82 :ETD 1e4fT 123 :KEN T0506 86 :RISVT 1e4fT 127 :KTPLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20107 # 1jfrA.82.77 read from T0506.t2k.many.frag # found chain 1jfrA in template set T0506 82 :ETDARISVT 1jfrA 78 :ASQGFVVFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20108 # 1gkpA.82.140 read from T0506.t2k.many.frag # found chain 1gkpA in training set Warning: unaligning (T0506)A85 (1gkpA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)V89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gkpA)I151 T0506 82 :ETD 1gkpA 142 :VAD T0506 86 :RIS 1gkpA 146 :ISS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20110 # 1ow1A.82.98 read from T0506.t2k.many.frag # found chain 1ow1A in training set T0506 82 :ETDARISVT 1ow1A 3568 :TVETDYCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20111 # 1mla.82.150 read from T0506.t2k.many.frag # found chain 1mla in training set Warning: unaligning (T0506)T83 (1mla)E152 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D84 (1mla)G153 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1mla)Q154 because Y (epsilon') conformation "forbidden" or filtered. T0506 82 :E 1mla 151 :A T0506 86 :RISVT 1mla 155 :VVSPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20113 # 1r26A.82.33 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 82 :ETDARISVT 1r26A 15 :MSEDILTVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20114 # 1ujpA.82.10 read from T0506.t2k.many.frag # found chain 1ujpA in training set T0506 82 :ETDARISVT 1ujpA 11 :RSEGRAALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20115 # 1t3yA.82.51 read from T0506.t2k.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)E82 (1t3yA)T53 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :TDARISVT 1t3yA 54 :DDVRLFAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=20116 # 2furA.82.73 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)D84 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 82 :ET 2furA 73 :KT T0506 85 :ARISVT 2furA 76 :QLIAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20118 # 1vkhA.82.72 read from T0506.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0506)A85 (1vkhA)S64 because L (left) conformation "forbidden" or filtered. T0506 82 :ETD 1vkhA 61 :DTE T0506 86 :RISVT 1vkhA 65 :TVCQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20120 1ylnA expands to /projects/compbio/data/pdb/1yln.pdb.gz 1ylnA:Bad short name: S for alphabet: pdb_atoms Bad short name: O1S for alphabet: pdb_atoms Bad short name: O2S for alphabet: pdb_atoms Bad short name: O3S for alphabet: pdb_atoms # 1ylnA.82.179 read from T0506.t2k.many.frag # adding 1ylnA to template set # found chain 1ylnA in template set Warning: unaligning (T0506)D84 (1ylnA)G182 because T (delta_L) conformation "forbidden" or filtered. T0506 82 :ET 1ylnA 180 :QV T0506 85 :ARISVT 1ylnA 183 :DLVALE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20122 1eybA expands to /projects/compbio/data/pdb/1eyb.pdb.gz 1eybA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1eybA.82.151 read from T0506.t2k.many.frag # adding 1eybA to template set # found chain 1eybA in template set Warning: unaligning (T0506)D84 (1eybA)N128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1eybA)G130 because S (epsilon) conformation "forbidden" or filtered. T0506 82 :ET 1eybA 126 :KS T0506 85 :A 1eybA 129 :N T0506 87 :ISVT 1eybA 131 :LAIH Number of specific fragments extracted= 3 number of extra gaps= 2 total=20125 1qhlA expands to /projects/compbio/data/pdb/1qhl.pdb.gz 1qhlA:# 1qhlA.82.81 read from T0506.t2k.many.frag # adding 1qhlA to template set # found chain 1qhlA in template set Warning: unaligning (T0506)D84 (1qhlA)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 82 :ET 1qhlA 82 :KA T0506 85 :ARISVT 1qhlA 85 :VCYSML Number of specific fragments extracted= 2 number of extra gaps= 1 total=20127 # 1oygA.82.89 read from T0506.t2k.many.frag # found chain 1oygA in training set Warning: unaligning (T0506)A85 (1oygA)T119 because E (beta_S) conformation "forbidden" or filtered. T0506 82 :ETD 1oygA 116 :ADD T0506 86 :RISVT 1oygA 120 :SIYMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20129 1vajA expands to /projects/compbio/data/pdb/1vaj.pdb.gz 1vajA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vajA.82.41 read from T0506.t2k.many.frag # adding 1vajA to template set # found chain 1vajA in template set T0506 82 :ETDARISVT 1vajA 42 :WEKMGVFVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20130 # 1i88A.82.214 read from T0506.t2k.many.frag # found chain 1i88A in training set T0506 82 :ETDARISVT 1i88A 215 :FGDGAAALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20131 # 1r6xA.82.95 read from T0506.t2k.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)D84 (1r6xA)D99 because T (delta_L) conformation "forbidden" or filtered. T0506 82 :ET 1r6xA 97 :KP T0506 85 :ARISVT 1r6xA 100 :TRIALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20133 # 1qw9A.82.415 read from T0506.t2k.many.frag # found chain 1qw9A in training set T0506 82 :ETDARISVT 1qw9A 416 :EEKEEVTIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20134 # 1nls.83.56 read from T0506.t2k.many.frag # found chain 1nls in training set T0506 83 :TDARISVTL 1nls 57 :VDKRLSAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20135 # 1xhnA.83.82 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 83 :TDARISVTL 1xhnA 83 :ENPYATLTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=20136 # 1ty9A.83.100 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D84 (1ty9A)N102 because D (zeta) conformation "forbidden" or filtered. T0506 83 :T 1ty9A 101 :H T0506 85 :ARISVTL 1ty9A 103 :PWASGVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20138 # 2bu3A.83.172 read from T0506.t2k.many.frag # found chain 2bu3A in template set T0506 83 :TDARISVTL 2bu3A 162 :QDGNFVIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20139 # 1i88A.83.215 read from T0506.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)T83 (1i88A)G216 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARISVTL 1i88A 217 :DGAAALIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20140 # 1uarA.83.19 read from T0506.t2k.many.frag # found chain 1uarA in training set T0506 83 :TDARISVTL 1uarA 20 :EDPKVRVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20141 # 1ow1A.83.99 read from T0506.t2k.many.frag # found chain 1ow1A in training set T0506 83 :TDARISVTL 1ow1A 3569 :VETDYCLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20142 # 1pjxA.83.148 read from T0506.t2k.many.frag # found chain 1pjxA in training set T0506 83 :TDARISVTL 1pjxA 149 :QEKFGSIYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20143 # 1wnaA.83.41 read from T0506.t2k.many.frag # found chain 1wnaA in training set T0506 83 :TDARISVTL 1wnaA 42 :DQARYALLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20144 # 1uasA.83.294 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)D84 (1uasA)N296 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1uasA)N297 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1uasA)R298 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :T 1uasA 295 :S T0506 87 :ISVTL 1uasA 299 :KAVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20146 # 1flmA.83.59 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)D84 (1flmA)D61 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1flmA)R63 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :T 1flmA 60 :R T0506 85 :A 1flmA 62 :E T0506 87 :ISVTL 1flmA 64 :VLMTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=20149 1nezG expands to /projects/compbio/data/pdb/1nez.pdb.gz 1nezG:# 1nezG.83.31 read from T0506.t2k.many.frag # adding 1nezG to template set # found chain 1nezG in template set Warning: unaligning (T0506)L91 (1nezG)F40 because Y (epsilon') conformation "forbidden" or filtered. T0506 83 :TDARISVT 1nezG 32 :VSQGCSWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20150 # 1jfrA.83.78 read from T0506.t2k.many.frag # found chain 1jfrA in template set T0506 83 :TDARISVTL 1jfrA 79 :SQGFVVFTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20151 # 1r26A.83.34 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 83 :TDARISVTL 1r26A 16 :SEDILTVAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20152 # 1vl7A.83.74 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 83 :TDARISVTL 1vl7A 63 :ANPLVNVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20153 # 1lc5A.83.203 read from T0506.t2k.many.frag # found chain 1lc5A in training set Warning: unaligning (T0506)R86 (1lc5A)H207 because G (3-10) conformation "forbidden" or filtered. T0506 83 :TDA 1lc5A 204 :DNP T0506 87 :ISVTL 1lc5A 208 :IWVLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20155 # 1qd1A.83.27 read from T0506.t2k.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)R86 (1qd1A)G32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L91 (1qd1A)D37 because Y (epsilon') conformation "forbidden" or filtered. T0506 83 :TDA 1qd1A 29 :QTP T0506 87 :ISVT 1qd1A 33 :CVLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20157 1jlyA expands to /projects/compbio/data/pdb/1jly.pdb.gz 1jlyA:# 1jlyA.83.39 read from T0506.t2k.many.frag # adding 1jlyA to template set # found chain 1jlyA in template set Warning: unaligning (T0506)S88 (1jlyA)Q44 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :TDARI 1jlyA 39 :LDPLA T0506 89 :VTL 1jlyA 45 :FEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20159 # 1qhlA.83.82 read from T0506.t2k.many.frag # found chain 1qhlA in template set T0506 83 :TDARISVTL 1qhlA 83 :AGVCYSMLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20160 1z90A expands to /projects/compbio/data/pdb/1z90.pdb.gz 1z90A:# 1z90A.83.238 read from T0506.t2k.many.frag # adding 1z90A to template set # found chain 1z90A in template set Warning: unaligning (T0506)D84 (1z90A)K240 because L (left) conformation "forbidden" or filtered. T0506 83 :T 1z90A 239 :N T0506 85 :ARISVTL 1z90A 241 :NEYCMEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20162 # 1i40A.83.98 read from T0506.t2k.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)D84 (1i40A)G100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1i40A)D102 because Y (epsilon') conformation "forbidden" or filtered. T0506 83 :T 1i40A 99 :A T0506 85 :A 1i40A 101 :E T0506 87 :ISVTL 1i40A 103 :AKLVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=20165 # 1gkpA.83.141 read from T0506.t2k.many.frag # found chain 1gkpA in training set Warning: unaligning (T0506)V89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gkpA)I151 Warning: unaligning (T0506)L91 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gkpA)I151 T0506 83 :TDARIS 1gkpA 143 :ADGISS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20166 1fy7A expands to /projects/compbio/data/pdb/1fy7.pdb.gz 1fy7A:# 1fy7A.83.72 read from T0506.t2k.many.frag # adding 1fy7A to template set # found chain 1fy7A in template set T0506 83 :TDARISVTL 1fy7A 230 :RDDYVSFFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20167 # 1uh4A.83.574 read from T0506.t2k.many.frag # found chain 1uh4A in template set T0506 83 :TDARISVTL 1uh4A 575 :NVNRIAVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20168 # 1xqbA.83.52 read from T0506.t2k.many.frag # found chain 1xqbA in template set T0506 83 :TDARISVTL 1xqbA 53 :QFSHLWLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20169 # 1xodA.83.27 read from T0506.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)D84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xodA)G35 Warning: unaligning (T0506)A85 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xodA)G35 T0506 83 :T 1xodA 33 :G T0506 86 :RISVTL 1xodA 36 :LSSVTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20171 # 1gsoA.83.327 read from T0506.t2k.many.frag # found chain 1gsoA in training set T0506 83 :TDARISVTL 1gsoA 326 :WDERASLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20172 # 1ujpA.83.11 read from T0506.t2k.many.frag # found chain 1ujpA in training set T0506 83 :TDARISVTL 1ujpA 12 :SEGRAALIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=20173 # 1qv9A.83.88 read from T0506.t2k.many.frag # found chain 1qv9A in training set Warning: unaligning (T0506)D84 (1qv9A)S90 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :T 1qv9A 89 :D T0506 85 :ARISVTL 1qv9A 91 :EYPAVII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20175 # 1oygA.83.90 read from T0506.t2k.many.frag # found chain 1oygA in training set T0506 83 :TDARISVTL 1oygA 117 :DDTSIYMFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=20176 # 1i88A.84.216 read from T0506.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A85 (1i88A)G218 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :D 1i88A 217 :D T0506 86 :RISVTL 1i88A 219 :AAALIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20178 # 1xhnA.84.83 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 84 :DARISVTLA 1xhnA 84 :NPYATLTMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20179 # 1nls.84.57 read from T0506.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0506)A85 (1nls)K59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1nls)S66 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :D 1nls 58 :D T0506 86 :RISVTL 1nls 60 :RLSAVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20181 2fb5A expands to /projects/compbio/data/pdb/2fb5.pdb.gz 2fb5A:# 2fb5A.84.89 read from T0506.t2k.many.frag # adding 2fb5A to template set # found chain 2fb5A in template set Warning: unaligning (T0506)A85 (2fb5A)K91 because L (left) conformation "forbidden" or filtered. T0506 84 :D 2fb5A 90 :R T0506 86 :RISVTLA 2fb5A 92 :HGALIVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20183 # 1wnaA.84.42 read from T0506.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0506)A92 (1wnaA)H51 because N (gamma') conformation "forbidden" or filtered. T0506 84 :DARISVTL 1wnaA 43 :QARYALLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20184 # 2bu3A.84.173 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)A85 (2bu3A)G164 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (2bu3A)N165 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :D 2bu3A 163 :D T0506 87 :ISVTLA 2bu3A 166 :FVIVNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20186 # 1ow1A.84.100 read from T0506.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0506)I87 (1ow1A)Y3573 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DAR 1ow1A 3570 :ETD T0506 88 :SVTLA 1ow1A 3574 :CLLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20188 # 1nezG.84.32 read from T0506.t2k.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)L91 (1nezG)F40 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARISVT 1nezG 33 :SQGCSWL T0506 92 :A 1nezG 41 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20190 # 1uc2A.84.94 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R86 (1uc2A)N97 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (1uc2A)G99 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DA 1uc2A 95 :DI T0506 87 :I 1uc2A 98 :C T0506 89 :VTLA 1uc2A 100 :VRLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=20193 # 1qhlA.84.83 read from T0506.t2k.many.frag # found chain 1qhlA in template set Warning: unaligning (T0506)A92 (1qhlA)T92 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARISVTL 1qhlA 84 :GVCYSMLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20194 # 1z90A.84.239 read from T0506.t2k.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)D84 (1z90A)K240 because L (left) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1z90A 241 :NEYCMEVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20195 # 1uasA.84.295 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)D84 (1uasA)N296 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1uasA)N297 because L (left) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1uasA 298 :RKAVVLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=20196 # 1ty9A.84.101 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R86 (1ty9A)W104 because P (beta_P) conformation "forbidden" or filtered. T0506 84 :DA 1ty9A 102 :NP T0506 87 :ISVTLA 1ty9A 105 :ASGVLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20198 2a6zA expands to /projects/compbio/data/pdb/2a6z.pdb.gz 2a6zA:Skipped atom 505, because occupancy 0.470 <= existing 0.530 in 2a6zA Skipped atom 507, because occupancy 0.470 <= existing 0.530 in 2a6zA Skipped atom 509, because occupancy 0.470 <= existing 0.530 in 2a6zA Skipped atom 647, because occupancy 0.390 <= existing 0.610 in 2a6zA Skipped atom 959, because occupancy 0.330 <= existing 0.670 in 2a6zA Skipped atom 961, because occupancy 0.330 <= existing 0.670 in 2a6zA Skipped atom 963, because occupancy 0.330 <= existing 0.670 in 2a6zA Skipped atom 1107, because occupancy 0.490 <= existing 0.510 in 2a6zA Skipped atom 1109, because occupancy 0.490 <= existing 0.510 in 2a6zA Skipped atom 1111, because occupancy 0.490 <= existing 0.510 in 2a6zA Skipped atom 1119, because occupancy 0.370 <= existing 0.630 in 2a6zA Skipped atom 1121, because occupancy 0.370 <= existing 0.630 in 2a6zA Skipped atom 1123, because occupancy 0.370 <= existing 0.630 in 2a6zA Skipped atom 1173, because occupancy 0.390 <= existing 0.610 in 2a6zA Skipped atom 1175, because occupancy 0.390 <= existing 0.610 in 2a6zA Skipped atom 1332, because occupancy 0.500 <= existing 0.500 in 2a6zA Skipped atom 1334, because occupancy 0.500 <= existing 0.500 in 2a6zA Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 2a6zA Skipped atom 1424, because occupancy 0.450 <= existing 0.550 in 2a6zA Skipped atom 1426, because occupancy 0.450 <= existing 0.550 in 2a6zA Skipped atom 1532, because occupancy 0.360 <= existing 0.640 in 2a6zA Skipped atom 1718, because occupancy 0.460 <= existing 0.540 in 2a6zA Skipped atom 1720, because occupancy 0.460 <= existing 0.540 in 2a6zA Skipped atom 1722, because occupancy 0.460 <= existing 0.540 in 2a6zA # 2a6zA.84.78 read from T0506.t2k.many.frag # adding 2a6zA to template set # found chain 2a6zA in template set Warning: unaligning (T0506)R86 (2a6zA)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DA 2a6zA 84 :DG T0506 87 :ISVTLA 2a6zA 87 :ISFWFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20200 # 1p1mA.84.334 read from T0506.t2k.many.frag # found chain 1p1mA in training set T0506 84 :DARISVTLA 1p1mA 335 :GWNADLVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20201 2blnA expands to /projects/compbio/data/pdb/2bln.pdb.gz 2blnA:Skipped atom 130, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 497, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 499, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 501, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 503, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 505, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 507, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 509, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1304, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1306, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1308, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1310, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1312, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1671, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1712, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1714, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2008, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2198, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2200, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2202, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2204, because occupancy 0.500 <= existing 0.500 in 2blnA # 2blnA.84.124 read from T0506.t2k.many.frag # adding 2blnA to template set # found chain 2blnA in template set Warning: unaligning (T0506)S88 (2blnA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARI 2blnA 125 :ETET T0506 89 :VTLA 2blnA 130 :VTLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20203 # 1pjxA.84.149 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)A85 (1pjxA)K151 because N (gamma') conformation "forbidden" or filtered. T0506 84 :D 1pjxA 150 :E T0506 86 :RISVTLA 1pjxA 152 :FGSIYCF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20205 # 1jlyA.84.40 read from T0506.t2k.many.frag # found chain 1jlyA in template set T0506 84 :DARISVTLA 1jlyA 40 :DPLAQFEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20206 # 1oygA.84.91 read from T0506.t2k.many.frag # found chain 1oygA in training set T0506 84 :DARISVTLA 1oygA 118 :DTSIYMFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20207 # 1uh4A.84.575 read from T0506.t2k.many.frag # found chain 1uh4A in template set T0506 84 :DARISVTLA 1uh4A 576 :VNRIAVVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20208 1nnwA expands to /projects/compbio/data/pdb/1nnw.pdb.gz 1nnwA:# 1nnwA.84.201 read from T0506.t2k.many.frag # adding 1nnwA to template set # found chain 1nnwA in template set Warning: unaligning (T0506)D84 (1nnwA)E202 because L (left) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1nnwA 203 :HKATFALV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20209 1zjcA expands to /projects/compbio/data/pdb/1zjc.pdb.gz 1zjcA:# 1zjcA.84.346 read from T0506.t2k.many.frag # adding 1zjcA to template set # found chain 1zjcA in template set Warning: unaligning (T0506)A92 (1zjcA)G352 because S (epsilon) conformation "forbidden" or filtered. T0506 84 :DARISVTL 1zjcA 344 :NAACHLAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20210 # 1vl7A.84.75 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 84 :DARISVTLA 1vl7A 64 :NPLVNVLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20211 1s3rA expands to /projects/compbio/data/pdb/1s3r.pdb.gz 1s3rA:# 1s3rA.84.344 read from T0506.t2k.many.frag # adding 1s3rA to template set # found chain 1s3rA in template set T0506 84 :DARISVTLA 1s3rA 342 :NTKITAVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20212 # 1fy7A.84.73 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 84 :DARISVTLA 1fy7A 231 :DDYVSFFEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20213 2bx6A expands to /projects/compbio/data/pdb/2bx6.pdb.gz 2bx6A:Skipped atom 639, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 643, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 645, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 647, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 649, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 651, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 653, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 655, because occupancy 0.400 <= existing 0.600 in 2bx6A Skipped atom 2124, because occupancy 0.500 <= existing 0.500 in 2bx6A Skipped atom 2128, because occupancy 0.500 <= existing 0.500 in 2bx6A Skipped atom 2130, because occupancy 0.500 <= existing 0.500 in 2bx6A Skipped atom 2132, because occupancy 0.500 <= existing 0.500 in 2bx6A Skipped atom 2134, because occupancy 0.500 <= existing 0.500 in 2bx6A Skipped atom 2136, because occupancy 0.500 <= existing 0.500 in 2bx6A # 2bx6A.84.231 read from T0506.t2k.many.frag # adding 2bx6A to template set # found chain 2bx6A in template set Warning: unaligning (T0506)D84 (2bx6A)S232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (2bx6A)D233 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (2bx6A)L240 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTL 2bx6A 234 :ESCLVV Number of specific fragments extracted= 1 number of extra gaps= 2 total=20214 # 1w6gA.84.54 read from T0506.t2k.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)D84 (1w6gA)D57 because D (zeta) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1w6gA 58 :RRFRVFIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=20215 # 1vajA.84.43 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)D84 (1vajA)K44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1vajA)N52 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1vajA 45 :MGVFVTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=20216 # 1jfrA.84.79 read from T0506.t2k.many.frag # found chain 1jfrA in template set Warning: unaligning (T0506)A85 (1jfrA)G81 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1jfrA)D88 because P (beta_P) conformation "forbidden" or filtered. T0506 84 :D 1jfrA 80 :Q T0506 86 :RISVTL 1jfrA 82 :FVVFTI Number of specific fragments extracted= 2 number of extra gaps= 2 total=20218 1r4xA expands to /projects/compbio/data/pdb/1r4x.pdb.gz 1r4xA:Bad short name: AS for alphabet: pdb_atoms # 1r4xA.84.102 read from T0506.t2k.many.frag # adding 1r4xA to template set # found chain 1r4xA in template set T0506 84 :DARISVTLA 1r4xA 702 :QPGTCYTLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20219 # 1i88A.85.217 read from T0506.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARISVTL 1i88A 218 :GAAALIV T0506 93 :P 1i88A 226 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=20221 # 1nls.85.58 read from T0506.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0506)A85 (1nls)K59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1nls)Y67 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1nls 60 :RLSAVVS Number of specific fragments extracted= 1 number of extra gaps= 2 total=20222 # 1xhnA.85.84 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)I87 (1xhnA)A87 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :AR 1xhnA 85 :PY T0506 88 :SVTLAP 1xhnA 88 :TLTMTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20224 # 1nezG.85.33 read from T0506.t2k.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)L91 (1nezG)F40 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARISVT 1nezG 34 :QGCSWL T0506 92 :AP 1nezG 41 :QN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20226 # 2bu3A.85.174 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)R86 (2bu3A)N165 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :A 2bu3A 164 :G T0506 87 :ISVTLAP 2bu3A 166 :FVIVNYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20228 # 1uc2A.85.95 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R86 (1uc2A)N97 because L (left) conformation "forbidden" or filtered. T0506 85 :A 1uc2A 96 :I T0506 87 :ISVTLAP 1uc2A 98 :CGVRLIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20230 # 2blnA.85.125 read from T0506.t2k.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)S88 (2blnA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARI 2blnA 126 :TET T0506 89 :VTLAP 2blnA 130 :VTLHR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20232 # 1wnaA.85.43 read from T0506.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0506)A85 (1wnaA)A44 because P (beta_P) conformation "forbidden" or filtered. T0506 86 :RISVTLAP 1wnaA 45 :RYALLLHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20233 # 2fb5A.85.90 read from T0506.t2k.many.frag # found chain 2fb5A in template set Warning: unaligning (T0506)A85 (2fb5A)K91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (2fb5A)H92 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :ISVTLAP 2fb5A 93 :GALIVVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20234 # 1ow1A.85.101 read from T0506.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0506)P93 (1ow1A)L3579 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1ow1A 3571 :TDYCLLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20235 # 1qhlA.85.84 read from T0506.t2k.many.frag # found chain 1qhlA in template set Warning: unaligning (T0506)P93 (1qhlA)I93 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1qhlA 85 :VCYSMLDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20236 # 1uh4A.85.576 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)A92 (1uh4A)N584 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1uh4A)N585 because G (3-10) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1uh4A 577 :NRIAVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20237 1o75A expands to /projects/compbio/data/pdb/1o75.pdb.gz 1o75A:Skipped atom 237, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 239, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 241, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 243, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 245, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 247, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 249, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 251, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 301, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 303, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 305, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 307, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 309, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 311, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 687, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 689, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 691, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 693, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 695, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 697, because occupancy 0.460 <= existing 0.540 in 1o75A Skipped atom 722, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 724, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 726, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 728, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 730, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 732, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 734, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 736, because occupancy 0.420 <= existing 0.580 in 1o75A Skipped atom 772, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 774, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 776, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 778, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 780, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 782, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 1996, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 1998, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2000, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2002, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2004, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2006, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2008, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2010, because occupancy 0.480 <= existing 0.520 in 1o75A Skipped atom 2066, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2068, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2070, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2072, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2074, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2076, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2078, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2080, because occupancy 0.410 <= existing 0.590 in 1o75A Skipped atom 2470, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2472, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2474, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2476, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2478, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2480, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2482, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2484, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2486, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2488, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2490, because occupancy 0.470 <= existing 0.530 in 1o75A Skipped atom 2527, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2529, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2531, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2533, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2535, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2537, because occupancy 0.280 <= existing 0.720 in 1o75A Skipped atom 2539, because occupancy 0.280 <= existing 0.720 in 1o75A # 1o75A.85.228 read from T0506.t2k.many.frag # adding 1o75A to template set # found chain 1o75A in template set T0506 85 :ARISVTLAP 1o75A 229 :AEASVMLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20238 # 1vl7A.85.76 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A92 (1vl7A)V72 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1vl7A 65 :PLVNVLF T0506 93 :P 1vl7A 73 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=20240 # 1pjxA.85.150 read from T0506.t2k.many.frag # found chain 1pjxA in training set T0506 85 :ARISVTLAP 1pjxA 151 :KFGSIYCFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20241 # 1w6gA.85.55 read from T0506.t2k.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)P93 (1w6gA)D66 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1w6gA 58 :RRFRVFIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=20242 # 1xszA.85.272 read from T0506.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)P93 (1xszA)T279 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1xszA 271 :AQATIQVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=20243 # 1gwmA.85.70 read from T0506.t2k.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)S88 (1gwmA)K74 because P (beta_P) conformation "forbidden" or filtered. T0506 85 :ARI 1gwmA 71 :GKV T0506 89 :VTLAP 1gwmA 75 :ILVEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20245 1w79A expands to /projects/compbio/data/pdb/1w79.pdb.gz 1w79A:# 1w79A.85.20 read from T0506.t2k.many.frag # adding 1w79A to template set # found chain 1w79A in template set T0506 85 :ARISVTLAP 1w79A 21 :AVSGVVVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20246 # 1oygA.85.92 read from T0506.t2k.many.frag # found chain 1oygA in training set T0506 85 :ARISVTLAP 1oygA 119 :TSIYMFYQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20247 1rewC expands to /projects/compbio/data/pdb/1rew.pdb.gz 1rewC:# 1rewC.85.62 read from T0506.t2k.many.frag # adding 1rewC to template set # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1rewC 57 :GHCFAIIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=20248 # 1r4xA.85.103 read from T0506.t2k.many.frag # found chain 1r4xA in template set T0506 85 :ARISVTLAP 1r4xA 703 :PGTCYTLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20249 # 1uasA.85.296 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)A85 (1uasA)N297 because L (left) conformation "forbidden" or filtered. T0506 86 :RISVTLAP 1uasA 298 :RKAVVLWN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20250 # 2a6zA.85.79 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)R86 (2a6zA)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :A 2a6zA 85 :G T0506 87 :ISVTLAP 2a6zA 87 :ISFWFVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20252 # 1rx0A.85.190 read from T0506.t2k.many.frag # found chain 1rx0A in training set T0506 85 :ARISVTLAP 1rx0A 191 :KGISCIVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20253 # 1jfrA.85.80 read from T0506.t2k.many.frag # found chain 1jfrA in template set Warning: unaligning (T0506)A85 (1jfrA)G81 because L (left) conformation "forbidden" or filtered. T0506 86 :RISVTLAP 1jfrA 82 :FVVFTIDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20254 # 1ogoX.85.107 read from T0506.t2k.many.frag # found chain 1ogoX in training set T0506 85 :ARISVTLAP 1ogoX 108 :HDVDVKILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20255 # 1nnwA.85.202 read from T0506.t2k.many.frag # found chain 1nnwA in template set T0506 85 :ARISVTLAP 1nnwA 203 :HKATFALVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20256 # 1wcdJ.85.65 read from T0506.t2k.many.frag # found chain 1wcdJ in template set T0506 85 :ARISVTLAP 1wcdJ 66 :SIVGAHYTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20257 # 1gsoA.85.329 read from T0506.t2k.many.frag # found chain 1gsoA in training set Warning: unaligning (T0506)P93 (1gsoA)M336 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1gsoA 328 :ERASLGVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20258 # 1i88A.86.218 read from T0506.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1i88A)D227 because L (left) conformation "forbidden" or filtered. T0506 86 :RISVTL 1i88A 219 :AAALIV T0506 93 :P 1i88A 226 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=20260 # 1nls.86.59 read from T0506.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0506)A92 (1nls)S66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1nls)Y67 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTL 1nls 60 :RLSAVV T0506 94 :F 1nls 68 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20262 # 1nezG.86.34 read from T0506.t2k.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)L91 (1nezG)F40 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RISVT 1nezG 35 :GCSWL T0506 92 :APF 1nezG 41 :QNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20264 # 1xhnA.86.85 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 86 :RISVTLAPF 1xhnA 86 :YATLTMTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20265 # 1uc2A.86.96 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)S88 (1uc2A)G99 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RI 1uc2A 97 :NC T0506 89 :VTLAPF 1uc2A 100 :VRLIRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20267 # 2bu3A.86.175 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)R86 (2bu3A)N165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (2bu3A)Y171 because Y (epsilon') conformation "forbidden" or filtered. T0506 87 :ISVTL 2bu3A 166 :FVIVN T0506 93 :PF 2bu3A 172 :LR Number of specific fragments extracted= 2 number of extra gaps= 2 total=20269 # 1rewC.86.63 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)A92 (1rewC)E64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTL 1rewC 58 :HCFAII T0506 94 :F 1rewC 66 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=20271 # 2fb5A.86.91 read from T0506.t2k.many.frag # found chain 2fb5A in template set T0506 86 :RISVTLAPF 2fb5A 92 :HGALIVVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=20272 # 1wnaA.86.44 read from T0506.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0506)F94 (1wnaA)G53 because T (delta_L) conformation "forbidden" or filtered. T0506 86 :RISVTLAP 1wnaA 45 :RYALLLHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20273 # 2blnA.86.126 read from T0506.t2k.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)S88 (2blnA)G129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (2blnA)H133 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RI 2blnA 127 :ET T0506 89 :VTL 2blnA 130 :VTL T0506 93 :PF 2blnA 134 :RM Number of specific fragments extracted= 3 number of extra gaps= 2 total=20276 # 1w79A.86.21 read from T0506.t2k.many.frag # found chain 1w79A in template set T0506 86 :RISVTLAPF 1w79A 22 :VSGVVVVDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20277 1xksA expands to /projects/compbio/data/pdb/1xks.pdb.gz 1xksA:# 1xksA.86.304 read from T0506.t2k.many.frag # adding 1xksA to template set # found chain 1xksA in template set T0506 86 :RISVTLAPF 1xksA 369 :YYSLITIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=20278 # 1gwmA.86.71 read from T0506.t2k.many.frag # found chain 1gwmA in training set T0506 86 :RISVTLAPF 1gwmA 72 :KVKILVENS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20279 # 1uh4A.86.577 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)A92 (1uh4A)N584 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1uh4A)N585 because G (3-10) conformation "forbidden" or filtered. T0506 86 :RISVTL 1uh4A 578 :RIAVVL T0506 94 :F 1uh4A 586 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=20281 # 1vl7A.86.77 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 86 :RISVTLAPF 1vl7A 66 :LVNVLFVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20282 # 1xszA.86.273 read from T0506.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)P93 (1xszA)T279 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1xszA 272 :QATIQVY T0506 94 :F 1xszA 280 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20284 # 1o75A.86.229 read from T0506.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0506)A92 (1o75A)K236 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RISVTL 1o75A 230 :EASVML T0506 93 :PF 1o75A 237 :RA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20286 # 1w6gA.86.56 read from T0506.t2k.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)A92 (1w6gA)H65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1w6gA)D66 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTL 1w6gA 59 :RFRVFI T0506 94 :F 1w6gA 67 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20288 # 1pjxA.86.151 read from T0506.t2k.many.frag # found chain 1pjxA in training set T0506 86 :RISVTLAPF 1pjxA 152 :FGSIYCFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20289 # 1jfrA.86.81 read from T0506.t2k.many.frag # found chain 1jfrA in template set T0506 86 :RISVTLAPF 1jfrA 82 :FVVFTIDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20290 # 1ogoX.86.108 read from T0506.t2k.many.frag # found chain 1ogoX in training set T0506 86 :RISVTLAPF 1ogoX 109 :DVDVKILAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20291 # 1rx0A.86.191 read from T0506.t2k.many.frag # found chain 1rx0A in training set T0506 86 :RISVTLAPF 1rx0A 192 :GISCIVVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20292 # 1oygA.86.93 read from T0506.t2k.many.frag # found chain 1oygA in training set T0506 86 :RISVTLAPF 1oygA 120 :SIYMFYQKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20293 # 1s3rA.86.346 read from T0506.t2k.many.frag # found chain 1s3rA in template set Warning: unaligning (T0506)A92 (1s3rA)L350 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1s3rA)G351 because T (delta_L) conformation "forbidden" or filtered. T0506 86 :RISVTL 1s3rA 344 :KITAVV T0506 94 :F 1s3rA 352 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=20295 # 1r4xA.86.104 read from T0506.t2k.many.frag # found chain 1r4xA in template set T0506 86 :RISVTLAPF 1r4xA 704 :GTCYTLVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20296 # 1uasA.86.297 read from T0506.t2k.many.frag # found chain 1uasA in training set T0506 86 :RISVTLAPF 1uasA 298 :RKAVVLWNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20297 # 1jlyA.86.42 read from T0506.t2k.many.frag # found chain 1jlyA in template set T0506 86 :RISVTLAPF 1jlyA 42 :LAQFEVEPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20298 # 1wcdJ.86.66 read from T0506.t2k.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)S88 (1wcdJ)G69 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RI 1wcdJ 67 :IV T0506 89 :VTLAPF 1wcdJ 70 :AHYTLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20300 # 2a6zA.86.80 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)A92 (2a6zA)V92 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTL 2a6zA 86 :GISFWF T0506 93 :PF 2a6zA 93 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20302 # 1ow1A.86.102 read from T0506.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0506)P93 (1ow1A)L3579 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1ow1A 3572 :DYCLLLA T0506 94 :F 1ow1A 3580 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20304 # 1nls.87.60 read from T0506.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0506)A92 (1nls)S66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1nls)Y67 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTL 1nls 61 :LSAVV T0506 94 :FG 1nls 68 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20306 # 1i88A.87.219 read from T0506.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1i88A)D227 because L (left) conformation "forbidden" or filtered. T0506 87 :ISVTL 1i88A 220 :AALIV T0506 93 :P 1i88A 226 :S T0506 95 :G 1i88A 228 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=20309 # 1nezG.87.35 read from T0506.t2k.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)L91 (1nezG)F40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1nezG)S44 because N (gamma') conformation "forbidden" or filtered. T0506 87 :ISVT 1nezG 36 :CSWL T0506 92 :APF 1nezG 41 :QNS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20311 # 2fb5A.87.92 read from T0506.t2k.many.frag # found chain 2fb5A in template set T0506 87 :ISVTLAPFG 2fb5A 93 :GALIVVERN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20312 # 1xksA.87.305 read from T0506.t2k.many.frag # found chain 1xksA in template set T0506 87 :ISVTLAPFG 1xksA 370 :YSLITIEDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20313 # 1rewC.87.64 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1rewC 59 :CFAIIE T0506 94 :FG 1rewC 66 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20315 # 1wnaA.87.45 read from T0506.t2k.many.frag # found chain 1wnaA in training set T0506 87 :ISVTLAPFG 1wnaA 46 :YALLLHTGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20316 # 1w79A.87.22 read from T0506.t2k.many.frag # found chain 1w79A in template set T0506 87 :ISVTLAPFG 1w79A 23 :SGVVVVDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20317 # 2bu3A.87.176 read from T0506.t2k.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)A92 (2bu3A)Y171 because Y (epsilon') conformation "forbidden" or filtered. T0506 87 :ISVTL 2bu3A 166 :FVIVN T0506 93 :PFG 2bu3A 172 :LRK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20319 # 1uc2A.87.97 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)S88 (1uc2A)G99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1uc2A)N106 because G (3-10) conformation "forbidden" or filtered. T0506 87 :I 1uc2A 98 :C T0506 89 :VTLAPF 1uc2A 100 :VRLIRT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20321 # 1f8eA.87.109 read from T0506.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A92 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0506 87 :ISVTL 1f8eA 190 :MSICI T0506 94 :FG 1f8eA 197 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20323 # 1gwmA.87.72 read from T0506.t2k.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)S88 (1gwmA)K74 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :I 1gwmA 73 :V T0506 89 :VTLAPFG 1gwmA 75 :ILVENSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20325 # 1z90A.87.242 read from T0506.t2k.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)G95 (1z90A)T251 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1z90A 243 :YCMEVTPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=20326 2bh1A expands to /projects/compbio/data/pdb/2bh1.pdb.gz 2bh1A:# 2bh1A.87.16 read from T0506.t2k.many.frag # adding 2bh1A to template set # found chain 2bh1A in template set T0506 87 :ISVTLAPFG 2bh1A 17 :IPWLVWSAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20327 1wqsA expands to /projects/compbio/data/pdb/1wqs.pdb.gz 1wqsA:# 1wqsA.87.82 read from T0506.t2k.many.frag # adding 1wqsA to template set # found chain 1wqsA in template set Warning: unaligning (T0506)G95 (1wqsA)S91 because D (zeta) conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1wqsA 83 :CSILIKRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20328 # 1ogoX.87.109 read from T0506.t2k.many.frag # found chain 1ogoX in training set T0506 87 :ISVTLAPFG 1ogoX 110 :VDVKILATD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20329 # 1jlyA.87.43 read from T0506.t2k.many.frag # found chain 1jlyA in template set Warning: unaligning (T0506)A92 (1jlyA)E48 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTL 1jlyA 43 :AQFEV T0506 93 :PFG 1jlyA 49 :PSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20331 # 1vl7A.87.78 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 87 :ISVTLAPFG 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20332 # 1uh4A.87.578 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)P93 (1uh4A)N585 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1uh4A)S587 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1uh4A 579 :IAVVLN T0506 94 :F 1uh4A 586 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=20334 # 1ow1A.87.103 read from T0506.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0506)P93 (1ow1A)L3579 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1ow1A)C3581 because Y (epsilon') conformation "forbidden" or filtered. T0506 87 :ISVTLA 1ow1A 3573 :YCLLLA T0506 94 :F 1ow1A 3580 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=20336 # 1pjxA.87.152 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)G95 (1pjxA)D161 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1pjxA 153 :GSIYCFTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20337 # 1jfrA.87.82 read from T0506.t2k.many.frag # found chain 1jfrA in template set T0506 87 :ISVTLAPFG 1jfrA 83 :VVFTIDTNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20338 1n35A expands to /projects/compbio/data/pdb/1n35.pdb.gz 1n35A:# 1n35A.87.734 read from T0506.t2k.many.frag # adding 1n35A to template set # found chain 1n35A in template set T0506 87 :ISVTLAPFG 1n35A 735 :DGLMIIDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20339 # 1xhnA.87.86 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 87 :ISVTLAPFG 1xhnA 87 :ATLTMTLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20340 1dyoA expands to /projects/compbio/data/pdb/1dyo.pdb.gz 1dyoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1dyoA.87.41 read from T0506.t2k.many.frag # adding 1dyoA to template set # found chain 1dyoA in template set Warning: unaligning (T0506)P93 (1dyoA)N48 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1dyoA)T50 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1dyoA 42 :ESLLVR T0506 94 :F 1dyoA 49 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=20342 # 1uasA.87.298 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)G95 (1uasA)Q307 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1uasA 299 :KAVVLWNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20343 # 1xszA.87.274 read from T0506.t2k.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)P93 (1xszA)T279 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1xszA 273 :ATIQVY T0506 94 :FG 1xszA 280 :PN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20345 # 2blnA.87.127 read from T0506.t2k.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)S88 (2blnA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0506 87 :I 2blnA 128 :T T0506 89 :VTLAPFG 2blnA 130 :VTLHRMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20347 # 1o75A.87.230 read from T0506.t2k.many.frag # found chain 1o75A in template set T0506 87 :ISVTLAPFG 1o75A 231 :ASVMLKRAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20348 # 1oygA.87.94 read from T0506.t2k.many.frag # found chain 1oygA in training set T0506 87 :ISVTLAPFG 1oygA 121 :IYMFYQKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20349 # 1nls.88.61 read from T0506.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0506)P93 (1nls)Y67 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLA 1nls 62 :SAVVS T0506 94 :FGK 1nls 68 :PNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20351 # 1xksA.88.306 read from T0506.t2k.many.frag # found chain 1xksA in template set T0506 88 :SVTLAPFGK 1xksA 371 :SLITIEDNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20352 # 1rewC.88.65 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLA 1rewC 60 :FAIIE T0506 94 :FGK 1rewC 66 :DDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20354 # 2fb5A.88.93 read from T0506.t2k.many.frag # found chain 2fb5A in template set T0506 88 :SVTLAPFGK 2fb5A 94 :ALIVVERNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20355 # 1i88A.88.220 read from T0506.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1i88A)D227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1i88A)V229 because P (beta_P) conformation "forbidden" or filtered. T0506 88 :SVTL 1i88A 221 :ALIV T0506 93 :P 1i88A 226 :S T0506 95 :G 1i88A 228 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=20358 # 1w79A.88.23 read from T0506.t2k.many.frag # found chain 1w79A in template set T0506 88 :SVTLAPFGK 1w79A 24 :GVVVVDTAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20359 # 1n35A.88.735 read from T0506.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0506)G95 (1n35A)T743 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLAPF 1n35A 736 :GLMIIDG T0506 96 :K 1n35A 744 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=20361 # 1f8eA.88.110 read from T0506.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A92 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. T0506 88 :SVTL 1f8eA 191 :SICI T0506 93 :PFGK 1f8eA 196 :GPNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20363 # 1z90A.88.243 read from T0506.t2k.many.frag # found chain 1z90A in template set T0506 88 :SVTLAPFGK 1z90A 244 :CMEVTPKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20364 # 1wnaA.88.46 read from T0506.t2k.many.frag # found chain 1wnaA in training set Warning: unaligning (T0506)A92 (1wnaA)H51 because N (gamma') conformation "forbidden" or filtered. T0506 88 :SVTL 1wnaA 47 :ALLL T0506 93 :PFGK 1wnaA 52 :TGKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20366 # 1jlyA.88.44 read from T0506.t2k.many.frag # found chain 1jlyA in template set T0506 88 :SVTLAPFGK 1jlyA 44 :QFEVEPSKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20367 # 1nezG.88.36 read from T0506.t2k.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)L91 (1nezG)F40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1nezG)S44 because N (gamma') conformation "forbidden" or filtered. T0506 88 :SVT 1nezG 37 :SWL T0506 92 :APF 1nezG 41 :QNS T0506 96 :K 1nezG 45 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=20370 # 2bh1A.88.17 read from T0506.t2k.many.frag # found chain 2bh1A in template set T0506 88 :SVTLAPFGK 2bh1A 18 :PWLVWSAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20371 # 1dyoA.88.42 read from T0506.t2k.many.frag # found chain 1dyoA in template set Warning: unaligning (T0506)A92 (1dyoA)R47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1dyoA)N48 because L (left) conformation "forbidden" or filtered. T0506 88 :SVTL 1dyoA 43 :SLLV T0506 94 :FGK 1dyoA 49 :RTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20373 # 1gwmA.88.73 read from T0506.t2k.many.frag # found chain 1gwmA in training set T0506 88 :SVTLAPFGK 1gwmA 74 :KILVENSEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20374 1ospO expands to /projects/compbio/data/pdb/1osp.pdb.gz 1ospO:# 1ospO.88.81 read from T0506.t2k.many.frag # adding 1ospO to template set # found chain 1ospO in template set Warning: unaligning (T0506)K96 (1ospO)G106 because L (left) conformation "forbidden" or filtered. T0506 88 :SVTLAPFG 1ospO 98 :TLEVFKED Number of specific fragments extracted= 1 number of extra gaps= 1 total=20375 # 1wqsA.88.83 read from T0506.t2k.many.frag # found chain 1wqsA in template set Warning: unaligning (T0506)K96 (1wqsA)G92 because T (delta_L) conformation "forbidden" or filtered. T0506 88 :SVTLAPFG 1wqsA 84 :SILIKRDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20376 # 1ogoX.88.110 read from T0506.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0506)G95 (1ogoX)D118 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1ogoX)G119 because T (delta_L) conformation "forbidden" or filtered. T0506 88 :SVTLAPF 1ogoX 111 :DVKILAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20377 # 1ne9A.88.57 read from T0506.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)A92 (1ne9A)G62 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1ne9A)T66 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTL 1ne9A 58 :SMLL T0506 93 :PFG 1ne9A 63 :DTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=20379 # 1pjxA.88.153 read from T0506.t2k.many.frag # found chain 1pjxA in training set T0506 88 :SVTLAPFGK 1pjxA 154 :SIYCFTTDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20380 # 1uh4A.88.579 read from T0506.t2k.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)A92 (1uh4A)N584 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1uh4A)N585 because G (3-10) conformation "forbidden" or filtered. T0506 88 :SVTL 1uh4A 580 :AVVL T0506 94 :FGK 1uh4A 586 :DSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20382 # 1nz0A.88.33 read from T0506.t2k.many.frag # found chain 1nz0A in training set Warning: unaligning (T0506)S88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nz0A)V33 T0506 89 :VTLAPFGK 1nz0A 34 :VLFRKNGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=20383 1guiA expands to /projects/compbio/data/pdb/1gui.pdb.gz 1guiA:Skipped atom 539, because occupancy 0.500 <= existing 0.500 in 1guiA Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 1guiA Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1guiA # 1guiA.88.47 read from T0506.t2k.many.frag # adding 1guiA to template set # found chain 1guiA in template set Warning: unaligning (T0506)P93 (1guiA)D55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1guiA)T58 because G (3-10) conformation "forbidden" or filtered. T0506 88 :SVTLA 1guiA 50 :YITIA T0506 94 :FG 1guiA 56 :PG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20385 # 1rx0A.88.193 read from T0506.t2k.many.frag # found chain 1rx0A in training set T0506 88 :SVTLAPFGK 1rx0A 194 :SCIVVEKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20386 2bghA expands to /projects/compbio/data/pdb/2bgh.pdb.gz 2bghA:# 2bghA.88.41 read from T0506.t2k.many.frag # adding 2bghA to template set # found chain 2bghA in template set T0506 88 :SVTLAPFGK 2bghA 42 :FILFYPNPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20387 # 1b25A.88.107 read from T0506.t2k.many.frag # found chain 1b25A in template set Warning: unaligning (T0506)S88 (1b25A)A108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1b25A)G113 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1b25A)A115 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLA 1b25A 109 :LVVE T0506 94 :F 1b25A 114 :K T0506 96 :K 1b25A 116 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=20390 # 1uc2A.88.98 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)G95 (1uc2A)N106 because G (3-10) conformation "forbidden" or filtered. T0506 88 :SVTLAPF 1uc2A 99 :GVRLIRT T0506 96 :K 1uc2A 107 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20392 # 1uasA.88.299 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)G95 (1uasA)Q307 because P (beta_P) conformation "forbidden" or filtered. T0506 88 :SVTLAPF 1uasA 300 :AVVLWNR T0506 96 :K 1uasA 308 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=20394 # 2bx6A.88.235 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)P93 (2bx6A)F241 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLA 2bx6A 236 :CLVVL T0506 94 :FGK 2bx6A 242 :AGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20396 1w5rA expands to /projects/compbio/data/pdb/1w5r.pdb.gz 1w5rA:# 1w5rA.88.114 read from T0506.t2k.many.frag # adding 1w5rA to template set # found chain 1w5rA in template set Warning: unaligning (T0506)S88 (1w5rA)V112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1w5rA)G119 because N (gamma') conformation "forbidden" or filtered. T0506 89 :VTLAPF 1w5rA 113 :LSVAVP T0506 96 :K 1w5rA 120 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=20398 # 1rewC.89.66 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. T0506 89 :VTLA 1rewC 61 :AIIE T0506 94 :FGKG 1rewC 66 :DDQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20400 # 1w79A.89.24 read from T0506.t2k.many.frag # found chain 1w79A in template set T0506 89 :VTLAPFGKG 1w79A 25 :VVVVDTATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20401 # 1nls.89.62 read from T0506.t2k.many.frag # found chain 1nls in training set Warning: unaligning (T0506)A92 (1nls)S66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1nls)Y67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1nls)D71 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTL 1nls 63 :AVV T0506 94 :FGK 1nls 68 :PNA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20403 # 2bh1A.89.18 read from T0506.t2k.many.frag # found chain 2bh1A in template set T0506 89 :VTLAPFGKG 2bh1A 19 :WLVWSAEQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20404 # 1xksA.89.307 read from T0506.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)G95 (1xksA)N378 because D (zeta) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1xksA 372 :LITIED T0506 96 :KG 1xksA 379 :GC Number of specific fragments extracted= 2 number of extra gaps= 1 total=20406 # 2fb5A.89.94 read from T0506.t2k.many.frag # found chain 2fb5A in template set T0506 89 :VTLAPFGKG 2fb5A 95 :LIVVERNET Number of specific fragments extracted= 1 number of extra gaps= 0 total=20407 # 1wcdJ.89.69 read from T0506.t2k.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)G95 (1wcdJ)G76 because H (helix) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1wcdJ 70 :AHYTLQ T0506 96 :KG 1wcdJ 77 :NG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20409 # 1ogoX.89.111 read from T0506.t2k.many.frag # found chain 1ogoX in training set Warning: unaligning (T0506)G95 (1ogoX)D118 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1ogoX)S120 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1ogoX 112 :VKILAT T0506 96 :K 1ogoX 119 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=20411 # 1ospO.89.82 read from T0506.t2k.many.frag # found chain 1ospO in template set Warning: unaligning (T0506)G95 (1ospO)D105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1ospO)G106 because L (left) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1ospO 99 :LEVFKE T0506 97 :G 1ospO 107 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20413 # 1m4jA.89.27 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)P93 (1m4jA)I32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. T0506 89 :VTLA 1m4jA 28 :LKIS T0506 94 :FG 1m4jA 33 :EN T0506 97 :G 1m4jA 36 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=20416 # 1r4xA.89.107 read from T0506.t2k.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)G95 (1r4xA)P713 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1r4xA 707 :YTLVAL T0506 96 :KG 1r4xA 714 :KE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20418 # 1z90A.89.244 read from T0506.t2k.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)G95 (1z90A)T251 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1z90A 245 :MEVTPK T0506 96 :KG 1z90A 252 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20420 # 1f8eA.89.111 read from T0506.t2k.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A92 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0506 89 :VTL 1f8eA 192 :ICI T0506 94 :FGKG 1f8eA 197 :PNNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20422 # 1pjxA.89.154 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)G95 (1pjxA)D161 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1pjxA)G162 because T (delta_L) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1pjxA 155 :IYCFTT T0506 97 :G 1pjxA 163 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20424 # 1n35A.89.736 read from T0506.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0506)G97 (1n35A)A745 because G (3-10) conformation "forbidden" or filtered. T0506 89 :VTLAPFGK 1n35A 737 :LMIIDGTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20425 # 1uasA.89.300 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)K96 (1uasA)S308 because G (3-10) conformation "forbidden" or filtered. T0506 89 :VTLAPFG 1uasA 301 :VVLWNRQ T0506 97 :G 1uasA 309 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=20427 # 1w5rA.89.115 read from T0506.t2k.many.frag # found chain 1w5rA in template set Warning: unaligning (T0506)G97 (1w5rA)D121 because N (gamma') conformation "forbidden" or filtered. T0506 89 :VTLAPFGK 1w5rA 113 :LSVAVPGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20428 # 1gwmA.89.74 read from T0506.t2k.many.frag # found chain 1gwmA in training set T0506 89 :VTLAPFGKG 1gwmA 75 :ILVENSEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20429 1x3mA expands to /projects/compbio/data/pdb/1x3m.pdb.gz 1x3mA:# 1x3mA.89.31 read from T0506.t2k.many.frag # adding 1x3mA to template set # found chain 1x3mA in template set T0506 89 :VTLAPFGKG 1x3mA 19 :FSVLDVATC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20430 # 1r0vA.89.118 read from T0506.t2k.many.frag # found chain 1r0vA in template set Warning: unaligning (T0506)V89 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)L119 Warning: unaligning (T0506)G95 (1r0vA)E125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1r0vA)S126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1r0vA)E127 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLAPF 1r0vA 120 :AVVDE Number of specific fragments extracted= 1 number of extra gaps= 2 total=20431 # 1guiA.89.48 read from T0506.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0506)P93 (1guiA)D55 because E (beta_S) conformation "forbidden" or filtered. T0506 89 :VTLA 1guiA 51 :ITIA T0506 94 :FGKG 1guiA 56 :PGTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20433 # 1nz0A.89.34 read from T0506.t2k.many.frag # found chain 1nz0A in training set T0506 89 :VTLAPFGKG 1nz0A 34 :VLFRKNGMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20434 # 2hft.89.35 read from T0506.t2k.many.frag # found chain 2hft in training set T0506 89 :VTLAPFGKG 2hft 36 :VQISTKSGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20435 1k5dB expands to /projects/compbio/data/pdb/1k5d.pdb.gz 1k5dB:# 1k5dB.89.87 read from T0506.t2k.many.frag # adding 1k5dB to template set # found chain 1k5dB in template set T0506 89 :VTLAPFGKG 1k5dB 88 :LLMRRDKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20436 # 1vajA.89.48 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)K96 (1vajA)V56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1vajA)P57 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPFG 1vajA 49 :VTLNRYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=20437 # 1rx0A.89.194 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)G97 (1rx0A)P203 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPFGK 1rx0A 195 :CIVVEKGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20438 # 1jlyA.89.45 read from T0506.t2k.many.frag # found chain 1jlyA in template set T0506 89 :VTLAPFGKG 1jlyA 45 :FEVEPSKTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=20439 2biwA expands to /projects/compbio/data/pdb/2biw.pdb.gz 2biwA:# 2biwA.89.281 read from T0506.t2k.many.frag # adding 2biwA to template set # found chain 2biwA in template set Warning: unaligning (T0506)G95 (2biwA)D288 because G (3-10) conformation "forbidden" or filtered. T0506 89 :VTLAPF 2biwA 282 :IILVPR T0506 96 :KG 2biwA 289 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20441 # 2b20A.89.93 read from T0506.t2k.many.frag # found chain 2b20A in template set Warning: unaligning (T0506)A92 (2b20A)I94 because D (zeta) conformation "forbidden" or filtered. T0506 89 :VTL 2b20A 91 :YCF T0506 93 :PFGKG 2b20A 95 :PTERD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20443 # 1ow1A.89.105 read from T0506.t2k.many.frag # found chain 1ow1A in training set Warning: unaligning (T0506)P93 (1ow1A)L3579 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1ow1A)G3582 because Y (epsilon') conformation "forbidden" or filtered. T0506 89 :VTLA 1ow1A 3575 :LLLA T0506 94 :FG 1ow1A 3580 :PC T0506 97 :G 1ow1A 3583 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=20446 # 1rewC.90.67 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1rewC)E70 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLA 1rewC 62 :IIE T0506 94 :FGKG 1rewC 66 :DDQG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20448 2carA expands to /projects/compbio/data/pdb/2car.pdb.gz 2carA:Skipped atom 13, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 17, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 19, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 21, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 23, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 122, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 124, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 128, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 130, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 144, because occupancy 0.340 <= existing 0.660 in 2carA Skipped atom 148, because occupancy 0.340 <= existing 0.660 in 2carA Skipped atom 150, because occupancy 0.340 <= existing 0.660 in 2carA Skipped atom 152, because occupancy 0.340 <= existing 0.660 in 2carA Skipped atom 154, because occupancy 0.340 <= existing 0.660 in 2carA Skipped atom 156, because occupancy 0.340 <= existing 0.660 in 2carA Skipped atom 236, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 238, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 240, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 242, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 244, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 246, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 248, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 250, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 338, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 340, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 342, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 344, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 346, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 348, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 350, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 352, because occupancy 0.350 <= existing 0.650 in 2carA Skipped atom 459, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 463, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 465, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 467, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 469, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 471, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 566, because occupancy 0.250 <= existing 0.750 in 2carA Skipped atom 570, because occupancy 0.250 <= existing 0.750 in 2carA Skipped atom 572, because occupancy 0.250 <= existing 0.750 in 2carA Skipped atom 574, because occupancy 0.250 <= existing 0.750 in 2carA Skipped atom 592, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 596, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 598, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 600, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 602, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 604, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 614, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 616, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 618, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 620, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 622, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 624, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 626, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 819, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 823, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 825, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 827, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 829, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 831, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1061, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1065, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1067, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1069, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1071, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1073, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1075, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1077, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1099, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1103, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1105, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1107, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1109, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1111, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1113, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1115, because occupancy 0.360 <= existing 0.640 in 2carA Skipped atom 1140, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1144, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1146, because occupancy 0.470 <= existing 0.530 in 2carA Skipped atom 1265, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1267, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1269, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1271, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1273, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1275, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1277, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1279, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1281, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1283, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1285, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1287, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1289, because occupancy 0.410 <= existing 0.600 in 2carA Skipped atom 1343, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1347, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1349, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1351, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1353, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1355, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1358, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1362, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1364, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1366, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1368, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1370, because occupancy 0.480 <= existing 0.520 in 2carA Skipped atom 1406, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 1410, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 1412, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 1414, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 1416, because occupancy 0.500 <= existing 0.500 in 2carA Skipped atom 1494, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1498, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1500, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1502, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1504, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1506, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1508, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1510, because occupancy 0.490 <= existing 0.510 in 2carA Skipped atom 1617, because occupancy 0.300 <= existing 0.700 in 2carA Skipped atom 1619, because occupancy 0.300 <= existing 0.700 in 2carA Skipped atom 1621, because occupancy 0.300 <= existing 0.700 in 2carA Skipped atom 1623, because occupancy 0.300 <= existing 0.700 in 2carA Skipped atom 1625, because occupancy 0.300 <= existing 0.700 in 2carA Skipped atom 1627, because occupancy 0.300 <= existing 0.700 in 2carA # 2carA.90.120 read from T0506.t2k.many.frag # adding 2carA to template set # found chain 2carA in template set Warning: unaligning (T0506)A92 (2carA)S121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 90 :TL 2carA 119 :AL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20449 # 1r4xA.90.108 read from T0506.t2k.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)G95 (1r4xA)P713 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLAPF 1r4xA 708 :TLVAL T0506 96 :KGD 1r4xA 714 :KED Number of specific fragments extracted= 2 number of extra gaps= 1 total=20451 # 1x99A.90.56 read from T0506.t2k.many.frag # found chain 1x99A in training set Warning: unaligning (T0506)A92 (1x99A)F59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1x99A)M60 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1x99A)E65 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TL 1x99A 57 :LR T0506 94 :FGKG 1x99A 61 :STKG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20453 # 1wcdJ.90.70 read from T0506.t2k.many.frag # found chain 1wcdJ in template set T0506 90 :TLAPFGKGD 1wcdJ 71 :HYTLQGNGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20454 # 1n35A.90.737 read from T0506.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0506)A92 (1n35A)I740 because N (gamma') conformation "forbidden" or filtered. T0506 90 :TL 1n35A 738 :MI T0506 93 :PFGKGD 1n35A 741 :DGTTAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20456 # 1l8bA.90.18 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)A92 (1l8bA)F48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1l8bA)S53 because G (3-10) conformation "forbidden" or filtered. T0506 90 :TL 1l8bA 46 :WF T0506 94 :FGK 1l8bA 50 :NDK T0506 98 :D 1l8bA 54 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=20459 # 1w79A.90.25 read from T0506.t2k.many.frag # found chain 1w79A in template set Warning: unaligning (T0506)D98 (1w79A)E34 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLAPFGKG 1w79A 26 :VVVDTATG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20460 1zupA expands to /projects/compbio/data/pdb/1zup.pdb.gz 1zupA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 829, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 1zupA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1181, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1183, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1185, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1187, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1189, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1191, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 1zupA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2160, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2162, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2164, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2166, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2168, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2170, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2172, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2174, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2176, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2178, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2180, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2182, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2184, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2186, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2188, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2190, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2192, because occupancy 0.500 <= existing 0.500 in 1zupA Skipped atom 2194, because occupancy 0.500 <= existing 0.500 in 1zupA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zupA.90.229 read from T0506.t2k.many.frag # adding 1zupA to template set # found chain 1zupA in template set Warning: unaligning (T0506)P93 (1zupA)L221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1zupA)D223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1zupA)E225 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1zupA)E225 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)G226 T0506 90 :TLA 1zupA 218 :YVK T0506 94 :F 1zupA 222 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=20462 2bzvA expands to /projects/compbio/data/pdb/2bzv.pdb.gz 2bzvA:Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 16, because occupancy 0.450 <= existing 0.550 in 2bzvA Skipped atom 18, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 20, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 142, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 146, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 292, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 294, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 320, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 321, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 325, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 326, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 328, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 329, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 331, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 332, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 334, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 335, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 337, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 338, because occupancy 0.250 <= existing 0.500 in 2bzvA Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 510, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 512, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 514, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 516, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 556, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 560, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 562, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 564, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 566, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 588, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 596, because occupancy 0.450 <= existing 0.550 in 2bzvA Skipped atom 598, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 600, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 607, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 609, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 895, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 899, because occupancy 0.350 <= existing 0.650 in 2bzvA Skipped atom 901, because occupancy 0.350 <= existing 0.650 in 2bzvA Skipped atom 903, because occupancy 0.300 <= existing 0.700 in 2bzvA Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 955, because occupancy 0.450 <= existing 0.550 in 2bzvA Skipped atom 957, because occupancy 0.450 <= existing 0.550 in 2bzvA Skipped atom 1091, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 1095, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 1097, because occupancy 0.350 <= existing 0.650 in 2bzvA Skipped atom 1099, because occupancy 0.350 <= existing 0.650 in 2bzvA Skipped atom 1101, because occupancy 0.350 <= existing 0.650 in 2bzvA Skipped atom 1103, because occupancy 0.350 <= existing 0.650 in 2bzvA Skipped atom 1105, because occupancy 0.350 <= existing 0.650 in 2bzvA Skipped atom 1152, because occupancy 0.400 <= existing 0.600 in 2bzvA Skipped atom 1156, because occupancy 0.250 <= existing 0.750 in 2bzvA Skipped atom 1158, because occupancy 0.250 <= existing 0.750 in 2bzvA Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 1201, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 1203, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 1205, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 1207, because occupancy 0.500 <= existing 0.500 in 2bzvA Skipped atom 1209, because occupancy 0.500 <= existing 0.500 in 2bzvA # 2bzvA.90.72 read from T0506.t2k.many.frag # adding 2bzvA to template set # found chain 2bzvA in template set Warning: unaligning (T0506)P93 (2bzvA)F290 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (2bzvA)N295 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLA 2bzvA 287 :KLP T0506 94 :FGKG 2bzvA 291 :DNQG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20464 # 1uasA.90.301 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)G95 (1uasA)Q307 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1uasA)Y309 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLAPF 1uasA 302 :VLWNR T0506 96 :K 1uasA 308 :S T0506 98 :D 1uasA 310 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=20467 # 1xksA.90.308 read from T0506.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)G97 (1xksA)C380 because G (3-10) conformation "forbidden" or filtered. T0506 90 :TLAPFGK 1xksA 373 :ITIEDNG T0506 98 :D 1xksA 381 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20469 2bo9B expands to /projects/compbio/data/pdb/2bo9.pdb.gz 2bo9B:Skipped atom 3274, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 3276, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 3278, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 3280, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 3692, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 3694, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 3696, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 3698, because occupancy 0.500 <= existing 0.500 in 2bo9B Skipped atom 4197, because occupancy 0.500 <= existing 0.500 in 2bo9B # 2bo9B.90.72 read from T0506.t2k.many.frag # adding 2bo9B to template set # found chain 2bo9B in template set Warning: unaligning (T0506)G95 (2bo9B)S78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (2bo9B)Q81 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLAPF 2bo9B 73 :EVLYP T0506 96 :KG 2bo9B 79 :TG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20471 # 1nz0A.90.35 read from T0506.t2k.many.frag # found chain 1nz0A in training set Warning: unaligning (T0506)A92 (1nz0A)R37 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TL 1nz0A 35 :LF T0506 93 :PFGKGD 1nz0A 38 :KNGMDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20473 # 1guiA.90.49 read from T0506.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0506)P93 (1guiA)D55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1guiA)G57 because S (epsilon) conformation "forbidden" or filtered. T0506 90 :TLA 1guiA 52 :TIA T0506 94 :F 1guiA 56 :P T0506 96 :KGD 1guiA 58 :TDT Number of specific fragments extracted= 3 number of extra gaps= 2 total=20476 # 1qw9A.90.423 read from T0506.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0506)G95 (1qw9A)D429 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1qw9A)E431 because G (3-10) conformation "forbidden" or filtered. T0506 90 :TLAPF 1qw9A 424 :FAVNR T0506 96 :K 1qw9A 430 :M T0506 98 :D 1qw9A 432 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=20479 # 1w5rA.90.116 read from T0506.t2k.many.frag # found chain 1w5rA in template set Warning: unaligning (T0506)K96 (1w5rA)A120 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1w5rA)G122 because S (epsilon) conformation "forbidden" or filtered. T0506 90 :TLAPFG 1w5rA 114 :SVAVPG T0506 97 :G 1w5rA 121 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=20481 # 1osyA.90.94 read from T0506.t2k.many.frag # found chain 1osyA in training set Warning: unaligning (T0506)D98 (1osyA)N102 because L (left) conformation "forbidden" or filtered. T0506 90 :TLAPFGKG 1osyA 94 :FVVIPDTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20482 # 1m4jA.90.28 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)A92 (1m4jA)S31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1m4jA)I32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1m4jA)E35 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1m4jA)Q36 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TL 1m4jA 29 :KI T0506 94 :FG 1m4jA 33 :EN T0506 98 :D 1m4jA 37 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20485 # 1o75A.90.233 read from T0506.t2k.many.frag # found chain 1o75A in template set Warning: unaligning (T0506)A92 (1o75A)K236 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1o75A)D239 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1o75A)G240 because T (delta_L) conformation "forbidden" or filtered. T0506 90 :TL 1o75A 234 :ML T0506 93 :PF 1o75A 237 :RA T0506 97 :GD 1o75A 241 :SE Number of specific fragments extracted= 3 number of extra gaps= 2 total=20488 1f5mA expands to /projects/compbio/data/pdb/1f5m.pdb.gz 1f5mA:# 1f5mA.90.69 read from T0506.t2k.many.frag # adding 1f5mA to template set # found chain 1f5mA in template set T0506 90 :TLAPFGKGD 1f5mA 70 :YVTQASEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20489 2fckA expands to /projects/compbio/data/pdb/2fck.pdb.gz 2fckA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 195, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 197, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 199, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 666, because occupancy 0.300 <= existing 0.700 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 668, because occupancy 0.300 <= existing 0.700 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 670, because occupancy 0.300 <= existing 0.700 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 672, because occupancy 0.300 <= existing 0.700 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 674, because occupancy 0.300 <= existing 0.700 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 676, because occupancy 0.300 <= existing 0.700 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 678, because occupancy 0.300 <= existing 0.700 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 680, because occupancy 0.300 <= existing 0.700 in 2fckA Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 716, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 718, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 720, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 726, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 743, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 745, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 2fckA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1043, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1045, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1047, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1049, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1051, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1053, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1055, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1057, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1059, because occupancy 0.400 <= existing 0.600 in 2fckA Skipped atom 1199, because occupancy 0.300 <= existing 0.700 in 2fckA Skipped atom 1201, because occupancy 0.300 <= existing 0.700 in 2fckA Skipped atom 1203, because occupancy 0.300 <= existing 0.700 in 2fckA Skipped atom 1205, because occupancy 0.300 <= existing 0.700 in 2fckA Skipped atom 1207, because occupancy 0.300 <= existing 0.700 in 2fckA Skipped atom 1209, because occupancy 0.300 <= existing 0.700 in 2fckA Skipped atom 1291, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1293, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1295, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1297, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1299, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1301, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1303, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1305, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1307, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1309, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1311, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1313, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1315, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1317, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1319, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1321, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1323, because occupancy 0.500 <= existing 0.500 in 2fckA Skipped atom 1325, because occupancy 0.500 <= existing 0.500 in 2fckA # 2fckA.90.73 read from T0506.t2k.many.frag # adding 2fckA to template set # found chain 2fckA in template set T0506 90 :TLAPFGKGD 2fckA 71 :GVFERQTQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20490 # 1xruA.90.182 read from T0506.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0506)A92 (1xruA)T182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1xruA)E183 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TL 1xruA 180 :GL T0506 94 :FGKGD 1xruA 184 :LAPGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20492 # 1gwmA.90.75 read from T0506.t2k.many.frag # found chain 1gwmA in training set T0506 90 :TLAPFGKGD 1gwmA 76 :LVENSEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=20493 1r6lA expands to /projects/compbio/data/pdb/1r6l.pdb.gz 1r6lA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1r6lA.90.188 read from T0506.t2k.many.frag # adding 1r6lA to template set # found chain 1r6lA in template set Warning: unaligning (T0506)P93 (1r6lA)M192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1r6lA)G197 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLA 1r6lA 189 :NVV T0506 94 :FGKG 1r6lA 193 :TDAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20495 # 1k5dB.90.88 read from T0506.t2k.many.frag # found chain 1k5dB in template set T0506 90 :TLAPFGKGD 1k5dB 89 :LMRRDKTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20496 # 2bx6A.90.237 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)P93 (2bx6A)F241 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (2bx6A)Y245 because G (3-10) conformation "forbidden" or filtered. T0506 90 :TLA 2bx6A 238 :VVL T0506 94 :FGK 2bx6A 242 :AGD T0506 98 :D 2bx6A 246 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=20499 # 1m9zA.90.37 read from T0506.t2k.many.frag # found chain 1m9zA in training set Warning: unaligning (T0506)A92 (1m9zA)W65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1m9zA)R66 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TL 1m9zA 63 :AV T0506 94 :FGKGD 1m9zA 67 :KNDEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20501 1hqz1 expands to /projects/compbio/data/pdb/1hqz.pdb.gz 1hqz1:# 1hqz1.90.32 read from T0506.t2k.many.frag # adding 1hqz1 to template set # found chain 1hqz1 in template set Warning: unaligning (T0506)P93 (1hqz1)S36 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLA 1hqz1 33 :LII T0506 94 :FGKGD 1hqz1 37 :PNAKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20503 # 1z90A.90.245 read from T0506.t2k.many.frag # found chain 1z90A in template set T0506 90 :TLAPFGKGD 1z90A 246 :EVTPKTLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20504 # 2carA.91.121 read from T0506.t2k.many.frag # found chain 2carA in template set Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 91 :LA 2carA 120 :LS T0506 99 :A 2carA 128 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20506 # 1r4xA.91.109 read from T0506.t2k.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)D98 (1r4xA)D716 because D (zeta) conformation "forbidden" or filtered. T0506 91 :LAPFGKG 1r4xA 709 :LVALPKE T0506 99 :A 1r4xA 717 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20508 # 1rewC.91.68 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1rewC)Q68 because G (3-10) conformation "forbidden" or filtered. T0506 91 :LA 1rewC 63 :IE T0506 94 :FG 1rewC 66 :DD T0506 97 :GDA 1rewC 69 :GET Number of specific fragments extracted= 3 number of extra gaps= 2 total=20511 # 1guiA.91.50 read from T0506.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0506)P93 (1guiA)D55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1guiA)D59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1guiA)W61 because G (3-10) conformation "forbidden" or filtered. T0506 91 :LA 1guiA 53 :IA T0506 94 :FGK 1guiA 56 :PGT T0506 98 :D 1guiA 60 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=20514 # 1n35A.91.738 read from T0506.t2k.many.frag # found chain 1n35A in template set Warning: unaligning (T0506)G97 (1n35A)A745 because G (3-10) conformation "forbidden" or filtered. T0506 91 :LAPFGK 1n35A 739 :IIDGTT T0506 98 :DA 1n35A 746 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20516 # 1gwyA.91.71 read from T0506.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0506)L91 (1gwyA)S72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1gwyA)R74 because Y (epsilon') conformation "forbidden" or filtered. T0506 92 :A 1gwyA 73 :G T0506 94 :FGKGDA 1gwyA 75 :KDTGPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20518 # 1nz0A.91.36 read from T0506.t2k.many.frag # found chain 1nz0A in training set Warning: unaligning (T0506)G97 (1nz0A)D42 because G (3-10) conformation "forbidden" or filtered. T0506 91 :LAPFGK 1nz0A 36 :FRKNGM T0506 98 :DA 1nz0A 43 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20520 # 1x99A.91.57 read from T0506.t2k.many.frag # found chain 1x99A in training set Warning: unaligning (T0506)P93 (1x99A)M60 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1x99A 58 :RF T0506 94 :FGKGDA 1x99A 61 :STKGER Number of specific fragments extracted= 2 number of extra gaps= 1 total=20522 # 1qw9A.91.424 read from T0506.t2k.many.frag # found chain 1qw9A in training set Warning: unaligning (T0506)G95 (1qw9A)D429 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1qw9A)A433 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LAPF 1qw9A 425 :AVNR T0506 96 :KGD 1qw9A 430 :MED Number of specific fragments extracted= 2 number of extra gaps= 2 total=20524 # 1z90A.91.246 read from T0506.t2k.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)G95 (1z90A)T251 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LAPF 1z90A 247 :VTPK T0506 96 :KGDA 1z90A 252 :LADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20526 1v0aA expands to /projects/compbio/data/pdb/1v0a.pdb.gz 1v0aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1v0aA.91.56 read from T0506.t2k.many.frag # adding 1v0aA to template set # found chain 1v0aA in template set Warning: unaligning (T0506)K96 (1v0aA)D62 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LAPFG 1v0aA 57 :VYSLP T0506 97 :GDA 1v0aA 63 :GDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20528 # 1zupA.91.230 read from T0506.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0506)P93 (1zupA)L221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1zupA)E225 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1zupA)E225 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)G226 T0506 91 :LA 1zupA 219 :VK T0506 94 :FG 1zupA 222 :ID T0506 99 :A 1zupA 227 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=20531 # 1t3yA.91.60 read from T0506.t2k.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)P93 (1t3yA)F64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1t3yA)G67 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1t3yA)A69 because S (epsilon) conformation "forbidden" or filtered. T0506 91 :LA 1t3yA 62 :VR T0506 94 :FG 1t3yA 65 :TT T0506 97 :G 1t3yA 68 :D T0506 99 :A 1t3yA 70 :M Number of specific fragments extracted= 4 number of extra gaps= 3 total=20535 # 1ts9A.91.21 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)P93 (1ts9A)E24 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1ts9A 22 :VV T0506 94 :FGKGDA 1ts9A 25 :SPNHSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20537 # 1osyA.91.95 read from T0506.t2k.many.frag # found chain 1osyA in training set Warning: unaligning (T0506)D98 (1osyA)N102 because L (left) conformation "forbidden" or filtered. T0506 91 :LAPFGKG 1osyA 95 :VVIPDTG T0506 99 :A 1osyA 103 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=20539 # 1l8bA.91.19 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1l8bA)K52 because T (delta_L) conformation "forbidden" or filtered. T0506 91 :LA 1l8bA 47 :FF T0506 94 :FG 1l8bA 50 :ND T0506 97 :GDA 1l8bA 53 :SKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=20542 1ln1A expands to /projects/compbio/data/pdb/1ln1.pdb.gz 1ln1A:# 1ln1A.91.42 read from T0506.t2k.many.frag # adding 1ln1A to template set # found chain 1ln1A in template set Warning: unaligning (T0506)D98 (1ln1A)G50 because T (delta_L) conformation "forbidden" or filtered. T0506 91 :LAPFGKG 1ln1A 43 :RLLDKKT T0506 99 :A 1ln1A 51 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=20544 1s4cA expands to /projects/compbio/data/pdb/1s4c.pdb.gz 1s4cA:# 1s4cA.91.48 read from T0506.t2k.many.frag # adding 1s4cA to template set # found chain 1s4cA in template set Warning: unaligning (T0506)A92 (1s4cA)M50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1s4cA)E51 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1s4cA)E53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1s4cA)T54 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :L 1s4cA 49 :V T0506 94 :F 1s4cA 52 :P T0506 97 :GDA 1s4cA 55 :AEP Number of specific fragments extracted= 3 number of extra gaps= 2 total=20547 1zxmA expands to /projects/compbio/data/pdb/1zxm.pdb.gz 1zxmA:# 1zxmA.91.272 read from T0506.t2k.many.frag # adding 1zxmA to template set # found chain 1zxmA in template set Warning: unaligning (T0506)A92 (1zxmA)T302 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1zxmA)E305 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1zxmA)F308 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :L 1zxmA 301 :L T0506 93 :PF 1zxmA 303 :MS T0506 96 :KG 1zxmA 306 :KG T0506 99 :A 1zxmA 309 :Q Number of specific fragments extracted= 4 number of extra gaps= 3 total=20551 # 1mixA.91.120 read from T0506.t2k.many.frag # found chain 1mixA in training set T0506 91 :LAPFGKGDA 1mixA 315 :VKEKMKGKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20552 1vhyA expands to /projects/compbio/data/pdb/1vhy.pdb.gz 1vhyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 679, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 681, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 683, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 685, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 778, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 780, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 782, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1831, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1833, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1835, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1837, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1839, because occupancy 0.350 <= existing 0.650 in 1vhyA # 1vhyA.91.55 read from T0506.t2k.many.frag # adding 1vhyA to template set # found chain 1vhyA in template set Warning: unaligning (T0506)P93 (1vhyA)E56 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1vhyA 54 :II T0506 94 :FGKGDA 1vhyA 57 :SNKKSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20554 # 1jlyA.91.188 read from T0506.t2k.many.frag # found chain 1jlyA in template set Warning: unaligning (T0506)F94 (1jlyA)D191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1jlyA)N194 because G (3-10) conformation "forbidden" or filtered. T0506 91 :LAP 1jlyA 188 :FGY T0506 95 :GK 1jlyA 192 :NL T0506 98 :DA 1jlyA 195 :DP Number of specific fragments extracted= 3 number of extra gaps= 2 total=20557 # 1rx0A.91.181 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)G97 (1rx0A)P188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1rx0A)G189 because S (epsilon) conformation "forbidden" or filtered. T0506 91 :LAPFGK 1rx0A 182 :MCRTGG T0506 99 :A 1rx0A 190 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20559 # 2bo9B.91.73 read from T0506.t2k.many.frag # found chain 2bo9B in template set Warning: unaligning (T0506)G95 (2bo9B)S78 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LAPF 2bo9B 74 :VLYP T0506 96 :KGDA 2bo9B 79 :TGQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20561 # 1wcdJ.91.71 read from T0506.t2k.many.frag # found chain 1wcdJ in template set T0506 91 :LAPFGKGDA 1wcdJ 72 :YTLQGNGNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=20562 # 1i88A.91.223 read from T0506.t2k.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1i88A)D227 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1i88A)P230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1i88A)E231 because T (delta_L) conformation "forbidden" or filtered. T0506 91 :L 1i88A 224 :V T0506 93 :P 1i88A 226 :S T0506 95 :GK 1i88A 228 :PV T0506 99 :A 1i88A 232 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=20566 # 1lqvA.91.100 read from T0506.t2k.many.frag # found chain 1lqvA in training set Warning: unaligning (T0506)P93 (1lqvA)L103 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1lqvA 101 :CE T0506 94 :FGKGDA 1lqvA 104 :PPEGSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20568 # 1t9iA.91.26 read from T0506.t2k.many.frag # found chain 1t9iA in training set Warning: unaligning (T0506)G97 (1t9iA)Y33 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LAPFGK 1t9iA 27 :IKPNQS T0506 98 :DA 1t9iA 34 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20570 1f35A expands to /projects/compbio/data/pdb/1f35.pdb.gz 1f35A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1f35A.91.141 read from T0506.t2k.many.frag # adding 1f35A to template set # found chain 1f35A in template set Warning: unaligning (T0506)G95 (1f35A)E147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1f35A)G148 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1f35A)V149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1f35A)E150 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LAPF 1f35A 143 :ITFG T0506 99 :A 1f35A 151 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=20572 # 1xruA.91.183 read from T0506.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0506)A92 (1xruA)T182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1xruA)E183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1xruA)A185 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :L 1xruA 181 :L T0506 94 :F 1xruA 184 :L T0506 96 :KGDA 1xruA 186 :PGNL Number of specific fragments extracted= 3 number of extra gaps= 2 total=20575 # 2carA.92.122 read from T0506.t2k.many.frag # found chain 2carA in template set Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 92 :A 2carA 121 :S T0506 99 :AL 2carA 128 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20577 # 1r4xA.92.110 read from T0506.t2k.many.frag # found chain 1r4xA in template set T0506 92 :APFGKGDAL 1r4xA 710 :VALPKEDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20578 # 1v0aA.92.57 read from T0506.t2k.many.frag # found chain 1v0aA in template set T0506 92 :APFGKGDAL 1v0aA 58 :YSLPDGDWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20579 # 1zupA.92.231 read from T0506.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0506)P93 (1zupA)L221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1zupA)E225 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1zupA)E225 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)G226 T0506 92 :A 1zupA 220 :K T0506 94 :FG 1zupA 222 :ID T0506 99 :AL 1zupA 227 :IR Number of specific fragments extracted= 3 number of extra gaps= 2 total=20582 # 1t3yA.92.61 read from T0506.t2k.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)P93 (1t3yA)F64 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :A 1t3yA 63 :R T0506 94 :FGKGDAL 1t3yA 65 :TTGDAMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20584 # 1rewC.92.69 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :A 1rewC 64 :E T0506 94 :FGKGDAL 1rewC 66 :DDQGETT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20586 # 1rx0A.92.182 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)A92 (1rx0A)C183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1rx0A)G189 because S (epsilon) conformation "forbidden" or filtered. T0506 93 :PFGKG 1rx0A 184 :RTGGP T0506 99 :AL 1rx0A 190 :PK Number of specific fragments extracted= 2 number of extra gaps= 2 total=20588 # 1guiA.92.51 read from T0506.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0506)P93 (1guiA)D55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1guiA)D59 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :A 1guiA 54 :A T0506 94 :FGK 1guiA 56 :PGT T0506 98 :DAL 1guiA 60 :TWH Number of specific fragments extracted= 3 number of extra gaps= 2 total=20591 # 1gwyA.92.72 read from T0506.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0506)P93 (1gwyA)R74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1gwyA)D76 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :A 1gwyA 73 :G T0506 94 :F 1gwyA 75 :K T0506 96 :KGDAL 1gwyA 77 :TGPVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=20594 # 1mixA.92.121 read from T0506.t2k.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)G95 (1mixA)M319 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1mixA)K322 because D (zeta) conformation "forbidden" or filtered. T0506 92 :APF 1mixA 316 :KEK T0506 96 :KG 1mixA 320 :KG T0506 99 :AL 1mixA 323 :NK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20597 # 1f35A.92.142 read from T0506.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)K96 (1f35A)G148 because T (delta_L) conformation "forbidden" or filtered. T0506 92 :APFG 1f35A 144 :TFGE T0506 97 :GDAL 1f35A 149 :VEPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20599 # 1z90A.92.247 read from T0506.t2k.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)G95 (1z90A)T251 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :APF 1z90A 248 :TPK T0506 96 :KGDAL 1z90A 252 :LADVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=20601 # 1jlyA.92.189 read from T0506.t2k.many.frag # found chain 1jlyA in template set T0506 92 :APFGKGDAL 1jlyA 189 :GYDNLNDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=20602 # 1s4cA.92.49 read from T0506.t2k.many.frag # found chain 1s4cA in template set Warning: unaligning (T0506)A92 (1s4cA)M50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1s4cA)E51 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1s4cA)A55 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1s4cA)E56 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGK 1s4cA 52 :PET T0506 99 :AL 1s4cA 57 :PS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20604 # 1l8bA.92.20 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1l8bA)S53 because G (3-10) conformation "forbidden" or filtered. T0506 92 :A 1l8bA 48 :F T0506 94 :FGK 1l8bA 50 :NDK T0506 98 :DAL 1l8bA 54 :KTW Number of specific fragments extracted= 3 number of extra gaps= 2 total=20607 # 1ts9A.92.22 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)A92 (1ts9A)V23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1ts9A)E24 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDAL 1ts9A 25 :SPNHSEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20608 1vyyA expands to /projects/compbio/data/pdb/1vyy.pdb.gz 1vyyA:Skipped atom 7, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 9, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 11, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 13, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 15, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 17, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 19, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 21, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 23, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 25, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 77, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 274, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 276, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 278, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 280, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 282, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 284, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 286, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 288, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 290, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 345, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 347, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 349, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 351, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 353, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 372, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 374, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 376, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 378, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 380, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 382, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 384, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 386, because occupancy 0.300 <= existing 0.700 in 1vyyA Skipped atom 406, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 408, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 410, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 412, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 414, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 416, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 418, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 420, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 422, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 482, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 484, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 486, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 488, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 490, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 492, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 522, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 524, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 526, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 528, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 530, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 532, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 541, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 543, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 545, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 547, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 549, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 551, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 553, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 555, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 599, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 601, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 603, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 605, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 607, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 609, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 611, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 619, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 621, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 623, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 650, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 674, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 1vyyA Skipped atom 695, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 697, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 699, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 701, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 703, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 705, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 707, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 709, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 711, because occupancy 0.200 <= existing 0.800 in 1vyyA Skipped atom 745, because occupancy 0.400 <= existing 0.600 in 1vyyA Skipped atom 747, because occupancy 0.400 <= existing 0.600 in 1vyyA Skipped atom 749, because occupancy 0.400 <= existing 0.600 in 1vyyA Skipped atom 751, because occupancy 0.400 <= existing 0.600 in 1vyyA Skipped atom 753, because occupancy 0.400 <= existing 0.600 in 1vyyA Skipped atom 755, because occupancy 0.400 <= existing 0.600 in 1vyyA Skipped atom 757, because occupancy 0.300 <= existing 0.600 in 1vyyA Skipped atom 759, because occupancy 0.300 <= existing 0.600 in 1vyyA # 1vyyA.92.92 read from T0506.t2k.many.frag # adding 1vyyA to template set # found chain 1vyyA in template set Warning: unaligning (T0506)P93 (1vyyA)E94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1vyyA)N99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1vyyA)Y101 because L (left) conformation "forbidden" or filtered. T0506 92 :A 1vyyA 93 :S T0506 94 :FGKG 1vyyA 95 :DGTD T0506 99 :A 1vyyA 100 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=20611 # 1cv8.92.107 read from T0506.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0506)G95 (1cv8)E111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1cv8)N114 because L (left) conformation "forbidden" or filtered. T0506 92 :APF 1cv8 108 :SRV T0506 96 :KG 1cv8 112 :SR T0506 99 :AL 1cv8 115 :GM Number of specific fragments extracted= 3 number of extra gaps= 2 total=20614 1xewY expands to /projects/compbio/data/pdb/1xew.pdb.gz 1xewY:# 1xewY.92.34 read from T0506.t2k.many.frag # adding 1xewY to template set # found chain 1xewY in template set T0506 92 :APFGKGDAL 1xewY 1040 :ILENPEDPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20615 # 1azo.92.127 read from T0506.t2k.many.frag # found chain 1azo in training set Warning: unaligning (T0506)D98 (1azo)I131 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :APFGKG 1azo 125 :VEGEAS T0506 99 :AL 1azo 132 :PL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20617 1txkA expands to /projects/compbio/data/pdb/1txk.pdb.gz 1txkA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1txkA.92.329 read from T0506.t2k.many.frag # adding 1txkA to template set # found chain 1txkA in template set Warning: unaligning (T0506)P93 (1txkA)E352 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1txkA)P354 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1txkA)N356 because G (3-10) conformation "forbidden" or filtered. T0506 92 :A 1txkA 351 :V T0506 94 :F 1txkA 353 :I T0506 96 :K 1txkA 355 :T T0506 98 :DAL 1txkA 357 :DET Number of specific fragments extracted= 4 number of extra gaps= 3 total=20621 # 1x7dA.92.71 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)P93 (1x7dA)G73 because D (zeta) conformation "forbidden" or filtered. T0506 92 :A 1x7dA 72 :N T0506 94 :FGKGDAL 1x7dA 74 :HPANTAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20623 2a5zA expands to /projects/compbio/data/pdb/2a5z.pdb.gz 2a5zA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a5zA.92.124 read from T0506.t2k.many.frag # adding 2a5zA to template set # found chain 2a5zA in template set Warning: unaligning (T0506)G97 (2a5zA)F130 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :APFGK 2a5zA 125 :KTPSA T0506 98 :DAL 2a5zA 131 :NPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20625 # 1nz0A.92.37 read from T0506.t2k.many.frag # found chain 1nz0A in training set Warning: unaligning (T0506)K96 (1nz0A)M41 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :APFG 1nz0A 37 :RKNG T0506 97 :GDAL 1nz0A 42 :DYSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20627 # 1yrtA.92.163 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)D170 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)D170 Warning: unaligning (T0506)A99 (1yrtA)F171 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :APFGK 1yrtA 164 :RRKGG T0506 100 :L 1yrtA 172 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=20629 # 1lqvA.92.101 read from T0506.t2k.many.frag # found chain 1lqvA in training set Warning: unaligning (T0506)P93 (1lqvA)L103 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1lqvA)S108 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :A 1lqvA 102 :E T0506 94 :FGKG 1lqvA 104 :PPEG T0506 99 :AL 1lqvA 109 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=20632 1vjhA expands to /projects/compbio/data/pdb/1vjh.pdb.gz 1vjhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 505, because occupancy 0.350 <= existing 0.650 in 1vjhA Skipped atom 507, because occupancy 0.350 <= existing 0.650 in 1vjhA Skipped atom 509, because occupancy 0.350 <= existing 0.650 in 1vjhA # 1vjhA.92.72 read from T0506.t2k.many.frag # adding 1vjhA to template set # found chain 1vjhA in template set Warning: unaligning (T0506)A92 (1vjhA)T73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1vjhA)V77 because D (zeta) conformation "forbidden" or filtered. T0506 93 :PFG 1vjhA 74 :PIG T0506 97 :GDAL 1vjhA 78 :GDGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20634 1wpuA expands to /projects/compbio/data/pdb/1wpu.pdb.gz 1wpuA:# 1wpuA.92.107 read from T0506.t2k.many.frag # adding 1wpuA to template set # found chain 1wpuA in template set Warning: unaligning (T0506)A92 (1wpuA)G109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1wpuA)Y112 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PF 1wpuA 110 :NP T0506 96 :KGDAL 1wpuA 113 :ESEAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=20636 1vqoB expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoB:# 1vqoB.92.54 read from T0506.t2k.many.frag # adding 1vqoB to template set # found chain 1vqoB in template set Warning: unaligning (T0506)G97 (1vqoB)N59 because G (3-10) conformation "forbidden" or filtered. T0506 92 :APFGK 1vqoB 54 :VNDEP T0506 98 :DAL 1vqoB 60 :SPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20638 # 1vlaA.92.87 read from T0506.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0506)P93 (1vlaA)E77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1vlaA)P83 because C (cis) conformation "forbidden" or filtered. T0506 92 :A 1vlaA 76 :Y T0506 94 :FGKGD 1vlaA 78 :RTEEH T0506 100 :L 1vlaA 84 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=20641 # 2carA.93.123 read from T0506.t2k.many.frag # found chain 2carA in template set Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 99 :ALT 2carA 128 :PVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20642 # 1r4xA.93.111 read from T0506.t2k.many.frag # found chain 1r4xA in template set T0506 93 :PFGKGDALT 1r4xA 711 :ALPKEDPTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20643 # 1rx0A.93.183 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)G97 (1rx0A)P188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1rx0A)G189 because S (epsilon) conformation "forbidden" or filtered. T0506 93 :PFGK 1rx0A 184 :RTGG T0506 99 :ALT 1rx0A 190 :PKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20645 # 1zupA.93.232 read from T0506.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0506)P93 (1zupA)L221 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1zupA)D223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1zupA)E225 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1zupA)E225 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)G226 T0506 94 :F 1zupA 222 :I T0506 99 :ALT 1zupA 227 :IRG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20647 # 1gwyA.93.73 read from T0506.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0506)P93 (1gwyA)R74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1gwyA)G78 because S (epsilon) conformation "forbidden" or filtered. T0506 94 :FGK 1gwyA 75 :KDT T0506 98 :DALT 1gwyA 79 :PVAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20649 # 1t3yA.93.62 read from T0506.t2k.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)P93 (1t3yA)F64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1t3yA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1t3yA)G67 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1t3yA)A69 because S (epsilon) conformation "forbidden" or filtered. T0506 94 :F 1t3yA 65 :T T0506 97 :G 1t3yA 68 :D T0506 99 :ALT 1t3yA 70 :MSK Number of specific fragments extracted= 3 number of extra gaps= 3 total=20652 # 1v0aA.93.58 read from T0506.t2k.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)G97 (1v0aA)G63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1v0aA)W65 because G (3-10) conformation "forbidden" or filtered. T0506 93 :PFGK 1v0aA 59 :SLPD T0506 98 :D 1v0aA 64 :D T0506 100 :LT 1v0aA 66 :SK Number of specific fragments extracted= 3 number of extra gaps= 2 total=20655 # 1vyyA.93.93 read from T0506.t2k.many.frag # found chain 1vyyA in template set Warning: unaligning (T0506)P93 (1vyyA)E94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1vyyA)N99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1vyyA)Y101 because L (left) conformation "forbidden" or filtered. T0506 94 :FGKG 1vyyA 95 :DGTD T0506 99 :A 1vyyA 100 :D T0506 101 :T 1vyyA 102 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=20658 # 1jlyA.93.190 read from T0506.t2k.many.frag # found chain 1jlyA in template set T0506 93 :PFGKGDALT 1jlyA 190 :YDNLNDPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20659 # 1xewY.93.35 read from T0506.t2k.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)G95 (1xewY)N1043 because D (zeta) conformation "forbidden" or filtered. T0506 93 :PF 1xewY 1041 :LE T0506 96 :KGDALT 1xewY 1044 :PEDPFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20661 # 1l8bA.93.22 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)D98 (1l8bA)T55 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PFGKG 1l8bA 50 :NDKSK T0506 99 :ALT 1l8bA 56 :WQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20663 # 1z90A.93.248 read from T0506.t2k.many.frag # found chain 1z90A in template set T0506 93 :PFGKGDALT 1z90A 249 :PKTLADVKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20664 # 1l8bA.93.21 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1l8bA)K52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1l8bA)K54 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FG 1l8bA 50 :ND T0506 97 :G 1l8bA 53 :S T0506 99 :ALT 1l8bA 55 :TWQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=20667 # 1azo.93.128 read from T0506.t2k.many.frag # found chain 1azo in training set T0506 93 :PFGKGDALT 1azo 126 :EGEASIPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20668 1v3eA expands to /projects/compbio/data/pdb/1v3e.pdb.gz 1v3eA:Skipped atom 792, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 1v3eA Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 1v3eA # 1v3eA.93.69 read from T0506.t2k.many.frag # adding 1v3eA to template set # found chain 1v3eA in template set Warning: unaligning (T0506)L100 (1v3eA)G218 because T (delta_L) conformation "forbidden" or filtered. T0506 93 :PFGKGDA 1v3eA 211 :TRGCQDI T0506 101 :T 1v3eA 219 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=20670 # 1rewC.93.70 read from T0506.t2k.many.frag # found chain 1rewC in template set Warning: unaligning (T0506)P93 (1rewC)E65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1rewC)E70 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGKG 1rewC 66 :DDQG T0506 99 :ALT 1rewC 71 :TTL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20672 1jhsA expands to /projects/compbio/data/pdb/1jhs.pdb.gz 1jhsA:# 1jhsA.93.111 read from T0506.t2k.many.frag # adding 1jhsA to template set # found chain 1jhsA in template set Warning: unaligning (T0506)P93 (1jhsA)A142 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDALT 1jhsA 143 :NKWGKPDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20673 # 1mixA.93.122 read from T0506.t2k.many.frag # found chain 1mixA in training set T0506 93 :PFGKGDALT 1mixA 317 :EKMKGKNKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20674 # 1vqoB.93.55 read from T0506.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0506)G97 (1vqoB)N59 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1vqoB)S60 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PFGK 1vqoB 55 :NDEP T0506 99 :ALT 1vqoB 61 :PRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20676 # 1yrtA.93.164 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)D170 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)D170 T0506 93 :PFGK 1yrtA 165 :RKGG T0506 99 :ALT 1yrtA 171 :FEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20678 # 1f35A.93.143 read from T0506.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)G95 (1f35A)E147 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PF 1f35A 145 :FG T0506 96 :KGDALT 1f35A 148 :GVEPAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=20680 # 1guiA.93.52 read from T0506.t2k.many.frag # found chain 1guiA in template set Warning: unaligning (T0506)P93 (1guiA)D55 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDALT 1guiA 56 :PGTDTWHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20681 1t9fA expands to /projects/compbio/data/pdb/1t9f.pdb.gz 1t9fA:# 1t9fA.93.42 read from T0506.t2k.many.frag # adding 1t9fA to template set # found chain 1t9fA in template set Warning: unaligning (T0506)P93 (1t9fA)V62 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDALT 1t9fA 63 :KNSDDINS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20682 # 1vlaA.93.88 read from T0506.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0506)P93 (1vlaA)E77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1vlaA)P83 because C (cis) conformation "forbidden" or filtered. T0506 94 :FGKGD 1vlaA 78 :RTEEH T0506 100 :LT 1vlaA 84 :RI Number of specific fragments extracted= 2 number of extra gaps= 2 total=20684 1zy7A expands to /projects/compbio/data/pdb/1zy7.pdb.gz 1zy7A:Skipped atom 2427, because occupancy 0.500 <= existing 0.500 in 1zy7A # 1zy7A.93.58 read from T0506.t2k.many.frag # adding 1zy7A to template set # found chain 1zy7A in template set Warning: unaligning (T0506)P93 (1zy7A)M357 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDALT 1zy7A 358 :TTGTDVKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=20685 2mprA expands to /projects/compbio/data/pdb/2mpr.pdb.gz 2mprA:# 2mprA.93.354 read from T0506.t2k.many.frag # adding 2mprA to template set # found chain 2mprA in template set Warning: unaligning (T0506)P93 (2mprA)W361 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (2mprA)G364 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (2mprA)D365 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FG 2mprA 362 :QA T0506 98 :DALT 2mprA 366 :SIWS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20687 # 1txkA.93.330 read from T0506.t2k.many.frag # found chain 1txkA in template set Warning: unaligning (T0506)P93 (1txkA)E352 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1txkA)P354 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1txkA)N356 because G (3-10) conformation "forbidden" or filtered. T0506 94 :F 1txkA 353 :I T0506 96 :K 1txkA 355 :T T0506 98 :DALT 1txkA 357 :DETN Number of specific fragments extracted= 3 number of extra gaps= 3 total=20690 # 1kptA.93.84 read from T0506.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)A99 (1kptA)D91 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PFGKGD 1kptA 85 :PLYAGN T0506 100 :LT 1kptA 92 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20692 # 1x7dA.93.72 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)P93 (1x7dA)G73 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 (1x7dA)N81 because L (left) conformation "forbidden" or filtered. T0506 94 :FGKGDAL 1x7dA 74 :HPANTAR Number of specific fragments extracted= 1 number of extra gaps= 2 total=20693 1u5uA expands to /projects/compbio/data/pdb/1u5u.pdb.gz 1u5uA:# 1u5uA.93.276 read from T0506.t2k.many.frag # adding 1u5uA to template set # found chain 1u5uA in template set Warning: unaligning (T0506)G97 (1u5uA)D281 because G (3-10) conformation "forbidden" or filtered. T0506 93 :PFGK 1u5uA 277 :EASP T0506 98 :DALT 1u5uA 282 :DTAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20695 # 2carA.94.124 read from T0506.t2k.many.frag # found chain 2carA in template set Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 99 :ALTL 2carA 128 :PVRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20696 # 1r4xA.94.112 read from T0506.t2k.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)G95 (1r4xA)P713 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1r4xA 712 :L T0506 96 :KGDALTL 1r4xA 714 :KEDPTAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20698 # 1rx0A.94.184 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)G95 (1rx0A)G186 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1rx0A)G187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1rx0A)P188 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1rx0A 185 :T T0506 98 :DALTL 1rx0A 189 :GPKGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20700 # 1gwyA.94.74 read from T0506.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0506)G95 (1gwyA)D76 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1gwyA 75 :K T0506 96 :KGDALTL 1gwyA 77 :TGPVATG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20702 # 1vyyA.94.94 read from T0506.t2k.many.frag # found chain 1vyyA in template set Warning: unaligning (T0506)D98 (1vyyA)N99 because L (left) conformation "forbidden" or filtered. T0506 94 :FGKG 1vyyA 95 :DGTD T0506 99 :ALTL 1vyyA 100 :DYND Number of specific fragments extracted= 2 number of extra gaps= 1 total=20704 # 1t3yA.94.63 read from T0506.t2k.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)G95 (1t3yA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1t3yA)G67 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1t3yA)R73 because Y (epsilon') conformation "forbidden" or filtered. T0506 94 :F 1t3yA 65 :T T0506 97 :GDALT 1t3yA 68 :DAMSK Number of specific fragments extracted= 2 number of extra gaps= 2 total=20706 # 1jlyA.94.191 read from T0506.t2k.many.frag # found chain 1jlyA in template set Warning: unaligning (T0506)G97 (1jlyA)N194 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FGK 1jlyA 191 :DNL T0506 98 :DALTL 1jlyA 195 :DPKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20708 # 1zupA.94.233 read from T0506.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0506)G95 (1zupA)D223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1zupA)E225 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1zupA)E225 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)G226 Warning: unaligning (T0506)T101 (1zupA)G229 because T (delta_L) conformation "forbidden" or filtered. T0506 94 :F 1zupA 222 :I T0506 99 :AL 1zupA 227 :IR T0506 102 :L 1zupA 230 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20711 # 1l8bA.94.23 read from T0506.t2k.many.frag # found chain 1l8bA in training set T0506 94 :FGKGDALTL 1l8bA 51 :DKSKTWQAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=20712 # 1v0aA.94.59 read from T0506.t2k.many.frag # found chain 1v0aA in template set T0506 94 :FGKGDALTL 1v0aA 60 :LPDGDWSKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=20713 1i8aA expands to /projects/compbio/data/pdb/1i8a.pdb.gz 1i8aA:# 1i8aA.94.65 read from T0506.t2k.many.frag # adding 1i8aA to template set # found chain 1i8aA in template set Warning: unaligning (T0506)K96 (1i8aA)N67 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FG 1i8aA 65 :KD T0506 97 :GDALTL 1i8aA 68 :SNPWEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20715 # 1jhsA.94.112 read from T0506.t2k.many.frag # found chain 1jhsA in template set Warning: unaligning (T0506)K96 (1jhsA)W145 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1jhsA)A151 because Y (epsilon') conformation "forbidden" or filtered. T0506 94 :FG 1jhsA 143 :NK T0506 97 :GDALT 1jhsA 146 :GKPDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20717 # 1kptA.94.85 read from T0506.t2k.many.frag # found chain 1kptA in training set T0506 94 :FGKGDALTL 1kptA 86 :LYAGNDVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20718 # 1vlaA.94.89 read from T0506.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0506)G97 (1vlaA)E81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1vlaA)P83 because C (cis) conformation "forbidden" or filtered. T0506 94 :FGK 1vlaA 78 :RTE T0506 98 :D 1vlaA 82 :H T0506 100 :LTL 1vlaA 84 :RIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=20721 # 1mixA.94.123 read from T0506.t2k.many.frag # found chain 1mixA in training set T0506 94 :FGKGDALTL 1mixA 318 :KMKGKNKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20722 # 1jidA.94.70 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)G97 (1jidA)R74 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FGK 1jidA 71 :EWN T0506 98 :DALTL 1jidA 75 :DVQYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20724 # 1xewY.94.36 read from T0506.t2k.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)L102 (1xewY)G1050 because Y (epsilon') conformation "forbidden" or filtered. T0506 94 :FGKGDALT 1xewY 1042 :ENPEDPFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20725 # 1v3eA.94.70 read from T0506.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)G97 (1v3eA)Q215 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1v3eA)G218 because T (delta_L) conformation "forbidden" or filtered. T0506 94 :FGK 1v3eA 212 :RGC T0506 98 :DA 1v3eA 216 :DI T0506 101 :TL 1v3eA 219 :KS Number of specific fragments extracted= 3 number of extra gaps= 2 total=20728 # 1azo.94.129 read from T0506.t2k.many.frag # found chain 1azo in training set T0506 94 :FGKGDALTL 1azo 127 :GEASIPLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=20729 # 1f35A.94.144 read from T0506.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)K96 (1f35A)G148 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1f35A)V149 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FG 1f35A 146 :GE T0506 98 :DALTL 1f35A 150 :EPANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20731 # 1l8bA.94.22 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)A99 (1l8bA)T55 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGKGD 1l8bA 50 :NDKSK T0506 100 :LTL 1l8bA 56 :WQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=20733 # 1yrtA.94.165 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE in next template residue (1yrtA)D170 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (1yrtA)D170 Warning: unaligning (T0506)A99 (1yrtA)F171 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGK 1yrtA 166 :KGG T0506 100 :LTL 1yrtA 172 :EAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20735 1ayoA expands to /projects/compbio/data/pdb/1ayo.pdb.gz 1ayoA:# 1ayoA.94.12 read from T0506.t2k.many.frag # adding 1ayoA to template set # found chain 1ayoA in template set Warning: unaligning (T0506)G97 (1ayoA)D18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1ayoA)G19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 T0506 94 :FGK 1ayoA 15 :QTC T0506 99 :ALT 1ayoA 20 :PKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20737 # 1sluA.94.27 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)G95 (1sluA)P29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1sluA)Q30 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :F 1sluA 28 :T T0506 97 :GDALTL 1sluA 31 :EDESTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20739 # 1x7dA.94.73 read from T0506.t2k.many.frag # found chain 1x7dA in training set T0506 94 :FGKGDALTL 1x7dA 74 :HPANTARNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20740 # 2mprA.94.355 read from T0506.t2k.many.frag # found chain 2mprA in template set Warning: unaligning (T0506)G95 (2mprA)A363 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (2mprA)D365 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (2mprA)S366 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :F 2mprA 362 :Q T0506 96 :K 2mprA 364 :G T0506 99 :ALTL 2mprA 367 :IWSR Number of specific fragments extracted= 3 number of extra gaps= 2 total=20743 # 1vqoB.94.56 read from T0506.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0506)G95 (1vqoB)E57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1vqoB)N59 because G (3-10) conformation "forbidden" or filtered. T0506 94 :F 1vqoB 56 :D T0506 96 :K 1vqoB 58 :P T0506 98 :DALTL 1vqoB 60 :SPREG Number of specific fragments extracted= 3 number of extra gaps= 2 total=20746 # 1vd5A.94.134 read from T0506.t2k.many.frag # found chain 1vd5A in training set T0506 94 :FGKGDALTL 1vd5A 135 :GPKGDPENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20747 # 1v0wA.94.36 read from T0506.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0506)G95 (1v0wA)S41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1v0wA)W48 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1v0wA)W48 T0506 94 :F 1v0wA 40 :G T0506 96 :KGDAL 1v0wA 42 :AADPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20749 # 1wrrA.94.20 read from T0506.t2k.many.frag # found chain 1wrrA in training set T0506 94 :FGKGDALTL 1wrrA 21 :DEKTGVQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20750 # 2carA.95.125 read from T0506.t2k.many.frag # found chain 2carA in template set Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 Warning: unaligning (T0506)P103 (2carA)F132 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 2carA 128 :PVRL Number of specific fragments extracted= 1 number of extra gaps= 2 total=20751 # 1r4xA.95.113 read from T0506.t2k.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)G95 (1r4xA)P713 because P (beta_P) conformation "forbidden" or filtered. T0506 96 :KGDALTLP 1r4xA 714 :KEDPTAVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20752 # 1rx0A.95.185 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)G97 (1rx0A)P188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1rx0A)S194 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GK 1rx0A 186 :GG T0506 98 :DALTL 1rx0A 189 :GPKGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=20754 # 1vyyA.95.95 read from T0506.t2k.many.frag # found chain 1vyyA in template set Warning: unaligning (T0506)D98 (1vyyA)N99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1vyyA)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1vyyA)G104 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GKG 1vyyA 96 :GTD T0506 99 :A 1vyyA 100 :D T0506 101 :TL 1vyyA 102 :ND Number of specific fragments extracted= 3 number of extra gaps= 3 total=20757 # 1i8aA.95.66 read from T0506.t2k.many.frag # found chain 1i8aA in template set T0506 95 :GKGDALTLP 1i8aA 66 :DNSNPWEQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=20758 # 1gwyA.95.75 read from T0506.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0506)G95 (1gwyA)D76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1gwyA)G83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gwyA)A84 because D (zeta) conformation "forbidden" or filtered. T0506 96 :KGDALT 1gwyA 77 :TGPVAT Number of specific fragments extracted= 1 number of extra gaps= 2 total=20759 # 1vl7A.95.88 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T101 (1vl7A)A83 because D (zeta) conformation "forbidden" or filtered. T0506 95 :GKGDAL 1vl7A 77 :KTNQIF T0506 102 :LP 1vl7A 84 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20761 # 1l8bA.95.24 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)G97 (1l8bA)K54 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GK 1l8bA 52 :KS T0506 98 :DALTLP 1l8bA 55 :TWQANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20763 # 1kptA.95.86 read from T0506.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)K96 (1kptA)A88 because P (beta_P) conformation "forbidden" or filtered. T0506 95 :G 1kptA 87 :Y T0506 97 :GDALTLP 1kptA 89 :GNDVSRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=20765 # 1jidA.95.71 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)K96 (1jidA)N73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 95 :G 1jidA 72 :W T0506 97 :GDALTL 1jidA 74 :RDVQYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=20767 1qlmA expands to /projects/compbio/data/pdb/1qlm.pdb.gz 1qlmA:Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 420, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 457, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 459, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 461, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1544, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1546, because occupancy 0.500 <= existing 0.500 in 1qlmA Skipped atom 1807, because occupancy 0.330 <= existing 0.670 in 1qlmA Skipped atom 1809, because occupancy 0.330 <= existing 0.670 in 1qlmA Skipped atom 1811, because occupancy 0.330 <= existing 0.670 in 1qlmA Skipped atom 1838, because occupancy 1.000 <= existing 1.000 in 1qlmA Skipped atom 1840, because occupancy 1.000 <= existing 1.000 in 1qlmA Skipped atom 1842, because occupancy 1.000 <= existing 1.000 in 1qlmA Skipped atom 1844, because occupancy 1.000 <= existing 1.000 in 1qlmA # 1qlmA.95.195 read from T0506.t2k.many.frag # adding 1qlmA to template set # found chain 1qlmA in template set Warning: unaligning (T0506)G95 (1qlmA)L196 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1qlmA)Y198 because P (beta_P) conformation "forbidden" or filtered. T0506 96 :K 1qlmA 197 :E T0506 98 :DALTLP 1qlmA 199 :DVTRVK Number of specific fragments extracted= 2 number of extra gaps= 2 total=20769 # 1t3yA.95.64 read from T0506.t2k.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)G95 (1t3yA)T66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1t3yA)G67 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1t3yA)D68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1t3yA)A69 because S (epsilon) conformation "forbidden" or filtered. T0506 99 :ALTLP 1t3yA 70 :MSKRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=20770 # 1sluA.95.28 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)P103 (1sluA)K37 because Y (epsilon') conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1sluA 29 :PQEDESTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=20771 # 1zupA.95.234 read from T0506.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0506)G95 (1zupA)D223 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1zupA)E225 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1zupA)E225 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)G226 Warning: unaligning (T0506)P103 (1zupA)V231 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1zupA 227 :IRGL Number of specific fragments extracted= 1 number of extra gaps= 2 total=20772 # 1v0aA.95.60 read from T0506.t2k.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)A99 (1v0aA)W65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1v0aA)L69 because G (3-10) conformation "forbidden" or filtered. T0506 95 :GKGD 1v0aA 61 :PDGD T0506 100 :LTL 1v0aA 66 :SKW Number of specific fragments extracted= 2 number of extra gaps= 2 total=20774 # 1vlaA.95.90 read from T0506.t2k.many.frag # found chain 1vlaA in training set Warning: unaligning (T0506)G97 (1vlaA)E81 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1vlaA)H82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1vlaA)P83 because C (cis) conformation "forbidden" or filtered. T0506 95 :GK 1vlaA 79 :TE T0506 100 :LTLP 1vlaA 84 :RIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20776 # 1f35A.95.145 read from T0506.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)G97 (1f35A)V149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1f35A)K155 because D (zeta) conformation "forbidden" or filtered. T0506 95 :GK 1f35A 147 :EG T0506 98 :DALTL 1f35A 150 :EPANL Number of specific fragments extracted= 2 number of extra gaps= 2 total=20778 # 1jlyA.95.192 read from T0506.t2k.many.frag # found chain 1jlyA in template set Warning: unaligning (T0506)P103 (1jlyA)H200 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1jlyA 192 :NLNDPKVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20779 # 1ayoA.95.13 read from T0506.t2k.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)G95 (1ayoA)T16 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1ayoA)C17 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 T0506 97 :GDALT 1ayoA 18 :DGPKA Number of specific fragments extracted= 1 number of extra gaps= 2 total=20780 # 1jhsA.95.113 read from T0506.t2k.many.frag # found chain 1jhsA in template set Warning: unaligning (T0506)L102 (1jhsA)A151 because Y (epsilon') conformation "forbidden" or filtered. T0506 95 :GKGDALT 1jhsA 144 :KWGKPDL T0506 103 :P 1jhsA 152 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=20782 # 1gy7A.95.71 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)G95 (1gy7A)Q72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1gy7A)S75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1gy7A)P76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KG 1gy7A 73 :PA T0506 100 :LTL 1gy7A 77 :YGD Number of specific fragments extracted= 2 number of extra gaps= 3 total=20784 # 1wrrA.95.21 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)D98 (1wrrA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1wrrA)V26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1wrrA)Y30 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GKG 1wrrA 22 :EKT T0506 100 :LTL 1wrrA 27 :QTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20786 # 1ukkA.95.85 read from T0506.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE in next template residue (1ukkA)V87 Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (1ukkA)V87 Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE at template residue (1ukkA)D88 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ukkA)G89 T0506 99 :ALTLP 1ukkA 90 :KPTLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=20787 # 1vd5A.95.135 read from T0506.t2k.many.frag # found chain 1vd5A in training set Warning: unaligning (T0506)P103 (1vd5A)G144 because G (3-10) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1vd5A 136 :PKGDPENG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20788 # 1o26A.95.63 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 95 :GKGDALTLP 1o26A 52 :GHETPFEHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=20789 # 1v3eA.95.71 read from T0506.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)L100 (1v3eA)G218 because T (delta_L) conformation "forbidden" or filtered. T0506 95 :GKGDA 1v3eA 213 :GCQDI T0506 101 :TLP 1v3eA 219 :KSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20791 # 1x7dA.95.74 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)T101 (1x7dA)N81 because L (left) conformation "forbidden" or filtered. T0506 95 :GKGDAL 1x7dA 75 :PANTAR T0506 102 :LP 1x7dA 82 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=20793 2a7bA expands to /projects/compbio/data/pdb/2a7b.pdb.gz 2a7bA:Skipped atom 255, because occupancy 0.200 <= existing 0.800 in 2a7bA Skipped atom 257, because occupancy 0.200 <= existing 0.800 in 2a7bA Skipped atom 259, because occupancy 0.200 <= existing 0.800 in 2a7bA Skipped atom 261, because occupancy 0.200 <= existing 0.800 in 2a7bA # 2a7bA.95.20 read from T0506.t2k.many.frag # adding 2a7bA to template set # found chain 2a7bA in template set Warning: unaligning (T0506)P103 (2a7bA)T731 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 2a7bA 723 :RSNTNPSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=20794 # 1v0wA.95.37 read from T0506.t2k.many.frag # found chain 1v0wA in training set Warning: unaligning (T0506)G95 (1v0wA)S41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1v0wA)W48 Warning: unaligning (T0506)L102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1v0wA)W48 T0506 96 :KGDAL 1v0wA 42 :AADPS T0506 103 :P 1v0wA 49 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=20796 # 1zy7A.95.60 read from T0506.t2k.many.frag # found chain 1zy7A in template set Warning: unaligning (T0506)K96 (1zy7A)G360 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1zy7A)K367 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :G 1zy7A 359 :T T0506 97 :GDALTL 1zy7A 361 :TDVKDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20798 # 2carA.96.126 read from T0506.t2k.many.frag # found chain 2carA in template set Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 Warning: unaligning (T0506)P103 (2carA)F132 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 2carA 128 :PVRL T0506 104 :R 2carA 133 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=20800 # 1rx0A.96.186 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)P103 (1rx0A)S194 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1rx0A 187 :GPGPKGI T0506 104 :R 1rx0A 195 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=20802 # 1vl7A.96.89 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D98 (1vl7A)Q80 because D (zeta) conformation "forbidden" or filtered. T0506 96 :KG 1vl7A 78 :TN T0506 99 :ALTLPR 1vl7A 81 :IFARRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20804 # 1qlmA.96.196 read from T0506.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)G97 (1qlmA)Y198 because P (beta_P) conformation "forbidden" or filtered. T0506 96 :K 1qlmA 197 :E T0506 98 :DALTLPR 1qlmA 199 :DVTRVKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20806 # 1i8aA.96.67 read from T0506.t2k.many.frag # found chain 1i8aA in template set T0506 96 :KGDALTLPR 1i8aA 67 :NSNPWEQDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20807 # 1jidA.96.72 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1jidA 73 :NRDVQYR T0506 104 :R 1jidA 81 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=20809 # 1sluA.96.29 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)P103 (1sluA)K37 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :KGDALTL 1sluA 30 :QEDESTL T0506 104 :R 1sluA 38 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20811 # 1r4xA.96.114 read from T0506.t2k.many.frag # found chain 1r4xA in template set T0506 96 :KGDALTLPR 1r4xA 714 :KEDPTAVAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=20812 # 1vyyA.96.96 read from T0506.t2k.many.frag # found chain 1vyyA in template set Warning: unaligning (T0506)K96 (1vyyA)T97 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1vyyA)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1vyyA)G104 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :GDA 1vyyA 98 :DND T0506 101 :TL 1vyyA 102 :ND T0506 104 :R 1vyyA 105 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=20815 # 1ayoA.96.14 read from T0506.t2k.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)G97 (1ayoA)D18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :K 1ayoA 17 :C T0506 98 :DALT 1ayoA 19 :GPKA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20817 # 1gwyA.96.76 read from T0506.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0506)L102 (1gwyA)G83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gwyA)A84 because D (zeta) conformation "forbidden" or filtered. T0506 96 :KGDALT 1gwyA 77 :TGPVAT T0506 104 :R 1gwyA 85 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20819 # 1kptA.96.87 read from T0506.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)R104 (1kptA)Q96 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :KGDALTLP 1kptA 88 :AGNDVSRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=20820 # 1o26A.96.64 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 96 :KGDALTLPR 1o26A 53 :HETPFEHIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20821 # 1uwwA.96.64 read from T0506.t2k.many.frag # found chain 1uwwA in training set Warning: unaligning (T0506)T101 (1uwwA)T70 because G (3-10) conformation "forbidden" or filtered. T0506 96 :KGDAL 1uwwA 65 :SDNWA T0506 102 :LPR 1uwwA 71 :APR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20823 # 1wrrA.96.22 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)D98 (1wrrA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1wrrA)Y30 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KG 1wrrA 23 :KT T0506 99 :ALTL 1wrrA 26 :VQTV T0506 104 :R 1wrrA 31 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=20826 # 1gy7A.96.72 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)D98 (1gy7A)S75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 (1gy7A)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KG 1gy7A 73 :PA T0506 99 :AL 1gy7A 76 :PY T0506 102 :L 1gy7A 79 :D T0506 104 :R 1gy7A 81 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=20830 # 1l8bA.96.25 read from T0506.t2k.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)K96 (1l8bA)S53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1l8bA)K54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1l8bA)T55 because P (beta_P) conformation "forbidden" or filtered. T0506 99 :ALTLPR 1l8bA 56 :WQANLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20831 # 1zupA.96.235 read from T0506.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0506)K96 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1zupA)E225 Warning: unaligning (T0506)G97 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1zupA)E225 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)G226 Warning: unaligning (T0506)A99 (1zupA)I227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1zupA)V231 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1zupA 228 :RGL T0506 104 :R 1zupA 232 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=20833 # 1vd5A.96.136 read from T0506.t2k.many.frag # found chain 1vd5A in training set Warning: unaligning (T0506)P103 (1vd5A)G144 because G (3-10) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1vd5A 137 :KGDPENG T0506 104 :R 1vd5A 145 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=20835 # 1zy7A.96.61 read from T0506.t2k.many.frag # found chain 1zy7A in template set Warning: unaligning (T0506)P103 (1zy7A)K367 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1zy7A 360 :GTDVKDA T0506 104 :R 1zy7A 368 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=20837 # 3vub.96.23 read from T0506.t2k.many.frag # found chain 3vub in training set Warning: unaligning (T0506)A99 (3vub)T27 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 (3vub)G29 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (3vub)R31 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGD 3vub 24 :IID T0506 100 :L 3vub 28 :P T0506 102 :L 3vub 30 :R T0506 104 :R 3vub 32 :M Number of specific fragments extracted= 4 number of extra gaps= 3 total=20841 # 1xruA.96.154 read from T0506.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0506)K96 (1xruA)L152 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1xruA)S158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1xruA)N159 because G (3-10) conformation "forbidden" or filtered. T0506 97 :GDALT 1xruA 153 :GDNLT T0506 104 :R 1xruA 160 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=20843 # 1t3yA.96.65 read from T0506.t2k.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)K96 (1t3yA)G67 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1t3yA)R73 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALT 1t3yA 68 :DAMSK T0506 103 :PR 1t3yA 74 :SK Number of specific fragments extracted= 2 number of extra gaps= 2 total=20845 # 1x6oA.96.107 read from T0506.t2k.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)R104 (1x6oA)H108 because P (beta_P) conformation "forbidden" or filtered. T0506 96 :KGDALTLP 1x6oA 100 :NEDPSLPA Number of specific fragments extracted= 1 number of extra gaps= 1 total=20846 # 1ukkA.96.86 read from T0506.t2k.many.frag # found chain 1ukkA in training set Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE at template residue (1ukkA)V87 Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE at template residue (1ukkA)D88 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ukkA)G89 T0506 99 :ALTLPR 1ukkA 90 :KPTLTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=20847 1n7zA expands to /projects/compbio/data/pdb/1n7z.pdb.gz 1n7zA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1n7zA.96.28 read from T0506.t2k.many.frag # adding 1n7zA to template set # found chain 1n7zA in template set Warning: unaligning (T0506)K96 (1n7zA)G29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1n7zA)G31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :G 1n7zA 30 :S T0506 99 :ALTL 1n7zA 32 :PDKN T0506 104 :R 1n7zA 37 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=20850 # 1x7dA.96.75 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)T101 (1x7dA)N81 because L (left) conformation "forbidden" or filtered. T0506 96 :KGDAL 1x7dA 76 :ANTAR T0506 102 :LPR 1x7dA 82 :LHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20852 # 1f35A.96.146 read from T0506.t2k.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)K96 (1f35A)G148 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1f35A)K155 because D (zeta) conformation "forbidden" or filtered. T0506 97 :GDALTL 1f35A 149 :VEPANL T0506 104 :R 1f35A 156 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=20854 # 1v3eA.96.72 read from T0506.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)L100 (1v3eA)G218 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1v3eA)S220 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :KGDA 1v3eA 214 :CQDI T0506 101 :T 1v3eA 219 :K T0506 103 :PR 1v3eA 221 :YQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=20857 # 2a7bA.96.21 read from T0506.t2k.many.frag # found chain 2a7bA in template set Warning: unaligning (T0506)A99 (2a7bA)N727 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2a7bA)T731 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGD 2a7bA 724 :SNT T0506 100 :LTL 2a7bA 728 :PSV T0506 104 :R 2a7bA 732 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=20860 # 1vl7A.97.90 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D98 (1vl7A)Q80 because D (zeta) conformation "forbidden" or filtered. T0506 97 :G 1vl7A 79 :N T0506 99 :ALTLPRL 1vl7A 81 :IFARRRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20862 # 1qlmA.97.197 read from T0506.t2k.many.frag # found chain 1qlmA in template set T0506 97 :GDALTLPRL 1qlmA 198 :YDVTRVKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=20863 # 1sluA.97.30 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)P103 (1sluA)K37 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALTL 1sluA 31 :EDESTL T0506 104 :RL 1sluA 38 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20865 # 1i8aA.97.68 read from T0506.t2k.many.frag # found chain 1i8aA in template set Warning: unaligning (T0506)D98 (1i8aA)N69 because P (beta_P) conformation "forbidden" or filtered. T0506 97 :G 1i8aA 68 :S T0506 99 :ALTLPRL 1i8aA 70 :PWEQDSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20867 # 1jidA.97.73 read from T0506.t2k.many.frag # found chain 1jidA in training set T0506 97 :GDALTLPRL 1jidA 74 :RDVQYRGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20868 # 1o26A.97.65 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 97 :GDALTLPRL 1o26A 54 :ETPFEHIVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20869 # 1rx0A.97.187 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)D98 (1rx0A)G189 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1rx0A)S194 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :G 1rx0A 188 :P T0506 99 :ALTL 1rx0A 190 :PKGI T0506 104 :RL 1rx0A 195 :CI Number of specific fragments extracted= 3 number of extra gaps= 2 total=20872 # 2carA.97.127 read from T0506.t2k.many.frag # found chain 2carA in template set Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 Warning: unaligning (T0506)P103 (2carA)F132 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 2carA 128 :PVRL T0506 104 :RL 2carA 133 :RG Number of specific fragments extracted= 2 number of extra gaps= 2 total=20874 # 1uwwA.97.65 read from T0506.t2k.many.frag # found chain 1uwwA in training set T0506 97 :GDALTLPRL 1uwwA 66 :DNWATAPRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20875 # 1xruA.97.155 read from T0506.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0506)P103 (1xruA)N159 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1xruA)R161 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALTL 1xruA 153 :GDNLTS T0506 104 :R 1xruA 160 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=20877 # 1ayoA.97.15 read from T0506.t2k.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)D98 (1ayoA)G19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 T0506 97 :G 1ayoA 18 :D T0506 99 :ALT 1ayoA 20 :PKA T0506 104 :RL 1ayoA 25 :SF Number of specific fragments extracted= 3 number of extra gaps= 2 total=20880 # 1n7zA.97.29 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)G97 (1n7zA)S30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1n7zA)G31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1n7zA 32 :PDKN T0506 104 :RL 1n7zA 37 :IF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20882 # 1kptA.97.88 read from T0506.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)D98 (1kptA)N90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1kptA)G95 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1kptA)Q96 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :G 1kptA 89 :G T0506 99 :ALTL 1kptA 91 :DVSR T0506 105 :L 1kptA 97 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=20885 # 1x6oA.97.108 read from T0506.t2k.many.frag # found chain 1x6oA in training set T0506 97 :GDALTLPRL 1x6oA 101 :EDPSLPAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20886 # 1gy7A.97.73 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :GDALTL 1gy7A 74 :ASPYGD T0506 104 :RL 1gy7A 81 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20888 2fdiA expands to /projects/compbio/data/pdb/2fdi.pdb.gz 2fdiA:# 2fdiA.97.125 read from T0506.t2k.many.frag # adding 2fdiA to template set # found chain 2fdiA in template set Warning: unaligning (T0506)A99 (2fdiA)D138 because D (zeta) conformation "forbidden" or filtered. T0506 97 :GD 2fdiA 136 :EP T0506 100 :LTLPRL 2fdiA 139 :LRAPIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20890 1xt5A expands to /projects/compbio/data/pdb/1xt5.pdb.gz 1xt5A:Skipped atom 106, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 108, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 110, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 132, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 134, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 136, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 138, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 140, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 142, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 184, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 186, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 188, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 190, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 734, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 736, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 738, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 740, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 931, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 933, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 935, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 937, because occupancy 0.350 <= existing 0.650 in 1xt5A Skipped atom 939, because occupancy 0.350 <= existing 0.650 in 1xt5A # 1xt5A.97.98 read from T0506.t2k.many.frag # adding 1xt5A to template set # found chain 1xt5A in template set Warning: unaligning (T0506)P103 (1xt5A)G105 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALTL 1xt5A 99 :VHPQDG T0506 104 :RL 1xt5A 106 :RY Number of specific fragments extracted= 2 number of extra gaps= 1 total=20892 # 1vyyA.97.97 read from T0506.t2k.many.frag # found chain 1vyyA in template set Warning: unaligning (T0506)L100 (1vyyA)Y101 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1vyyA)G104 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :GDA 1vyyA 98 :DND T0506 101 :TL 1vyyA 102 :ND T0506 104 :RL 1vyyA 105 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=20895 1ovnA expands to /projects/compbio/data/pdb/1ovn.pdb.gz 1ovnA:# 1ovnA.97.90 read from T0506.t2k.many.frag # adding 1ovnA to template set # found chain 1ovnA in template set Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ovnA)D101 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ovnA)D101 Warning: unaligning (T0506)A99 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ovnA)D102 T0506 100 :LTLPRL 1ovnA 103 :KNFPSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=20896 # 1wrrA.97.23 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)D98 (1wrrA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1wrrA)Y30 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :G 1wrrA 24 :T T0506 99 :ALTL 1wrrA 26 :VQTV T0506 104 :RL 1wrrA 31 :EM Number of specific fragments extracted= 3 number of extra gaps= 2 total=20899 # 3vub.97.24 read from T0506.t2k.many.frag # found chain 3vub in training set Warning: unaligning (T0506)G97 (3vub)I25 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (3vub)T27 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (3vub)R31 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :D 3vub 26 :D T0506 100 :LTL 3vub 28 :PGR T0506 104 :RL 3vub 32 :MV Number of specific fragments extracted= 3 number of extra gaps= 3 total=20902 # 1vd5A.97.137 read from T0506.t2k.many.frag # found chain 1vd5A in training set Warning: unaligning (T0506)P103 (1vd5A)G144 because G (3-10) conformation "forbidden" or filtered. T0506 97 :GDALTL 1vd5A 138 :GDPENG T0506 104 :RL 1vd5A 145 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20904 # 1gwyA.97.77 read from T0506.t2k.many.frag # found chain 1gwyA in training set Warning: unaligning (T0506)L102 (1gwyA)G83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gwyA)A84 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1gwyA)A86 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALT 1gwyA 78 :GPVAT T0506 104 :R 1gwyA 85 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=20906 # 1m2dA.97.56 read from T0506.t2k.many.frag # found chain 1m2dA in training set T0506 97 :GDALTLPRL 1m2dA 57 :NASMMGPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20907 # 1avwB.97.96 read from T0506.t2k.many.frag # found chain 1avwB in training set T0506 97 :GDALTLPRL 1avwB 597 :EDLPEGPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20908 # 1zy7A.97.62 read from T0506.t2k.many.frag # found chain 1zy7A in template set Warning: unaligning (T0506)P103 (1zy7A)K367 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :GDALTL 1zy7A 361 :TDVKDA T0506 104 :RL 1zy7A 368 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20910 # 1cv8.97.112 read from T0506.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0506)G97 (1cv8)R113 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1cv8)N114 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1cv8)G115 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1cv8)G119 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1cv8 116 :MHA T0506 104 :RL 1cv8 120 :HA Number of specific fragments extracted= 2 number of extra gaps= 2 total=20912 2f1lA expands to /projects/compbio/data/pdb/2f1l.pdb.gz 2f1lA:Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 766, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 770, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 851, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 2f1lA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 2f1lA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f1lA.97.45 read from T0506.t2k.many.frag # adding 2f1lA to template set # found chain 2f1lA in template set Warning: unaligning (T0506)G97 (2f1lA)D34 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DALTLPRL 2f1lA 35 :NLLDYRRW Number of specific fragments extracted= 1 number of extra gaps= 1 total=20913 # 1x7dA.97.76 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)T101 (1x7dA)N81 because L (left) conformation "forbidden" or filtered. T0506 97 :GDAL 1x7dA 77 :NTAR T0506 102 :LPRL 1x7dA 82 :LHTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20915 1of5A expands to /projects/compbio/data/pdb/1of5.pdb.gz 1of5A:# 1of5A.97.121 read from T0506.t2k.many.frag # adding 1of5A to template set # found chain 1of5A in template set Warning: unaligning (T0506)L102 (1of5A)G394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :GDALT 1of5A 389 :YPQIN T0506 104 :RL 1of5A 396 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20917 # 1vl7A.98.91 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T101 (1vl7A)A83 because D (zeta) conformation "forbidden" or filtered. T0506 98 :DAL 1vl7A 80 :QIF T0506 102 :LPRLT 1vl7A 84 :RRRLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20919 # 1qlmA.98.198 read from T0506.t2k.many.frag # found chain 1qlmA in template set T0506 98 :DALTLPRLT 1qlmA 199 :DVTRVKYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20920 # 1i8aA.98.69 read from T0506.t2k.many.frag # found chain 1i8aA in template set Warning: unaligning (T0506)R104 (1i8aA)S75 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTLP 1i8aA 69 :NPWEQD T0506 105 :LT 1i8aA 76 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=20922 # 1o26A.98.66 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 98 :DALTLPRLT 1o26A 55 :TPFEHIVFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20923 # 1sluA.98.31 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)T101 (1sluA)T35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1sluA)K37 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DAL 1sluA 32 :DES T0506 102 :L 1sluA 36 :L T0506 104 :RLT 1sluA 38 :VEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=20926 # 1jidA.98.74 read from T0506.t2k.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 98 :DALTL 1jidA 75 :DVQYR T0506 104 :RLT 1jidA 81 :RVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=20928 # 1xt5A.98.99 read from T0506.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0506)P103 (1xt5A)G105 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTL 1xt5A 100 :HPQDG T0506 104 :RLT 1xt5A 106 :RYW Number of specific fragments extracted= 2 number of extra gaps= 1 total=20930 # 1xruA.98.156 read from T0506.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0506)L102 (1xruA)S158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1xruA)N159 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DALT 1xruA 154 :DNLT T0506 104 :RLT 1xruA 160 :RRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20932 # 1kptA.98.89 read from T0506.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)R104 (1kptA)Q96 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTLP 1kptA 90 :NDVSRG T0506 105 :LT 1kptA 97 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20934 # 1xdnA.98.99 read from T0506.t2k.many.frag # found chain 1xdnA in training set T0506 98 :DALTLPRLT 1xdnA 147 :GLSRVGRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=20935 # 1uwwA.98.66 read from T0506.t2k.many.frag # found chain 1uwwA in training set Warning: unaligning (T0506)T101 (1uwwA)T70 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DAL 1uwwA 67 :NWA T0506 102 :LPRLT 1uwwA 71 :APRLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=20937 # 1w9hA.98.173 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)P103 (1w9hA)S179 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DALTL 1w9hA 174 :DPEKG T0506 104 :RLT 1w9hA 180 :DII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20939 # 1n7zA.98.30 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DALTL 1n7zA 31 :GPDKN T0506 104 :RLT 1n7zA 37 :IFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20941 # 1x6oA.98.109 read from T0506.t2k.many.frag # found chain 1x6oA in training set T0506 98 :DALTLPRLT 1x6oA 102 :DPSLPAHLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20942 # 1xhnA.98.106 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 98 :DALTLPRLT 1xhnA 107 :QSPLCVHIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=20943 # 1of5A.98.122 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)T101 (1of5A)N393 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1of5A)G394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DAL 1of5A 390 :PQI T0506 104 :RLT 1of5A 396 :VIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20945 # 1gy7A.98.74 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)D98 (1gy7A)S75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 (1gy7A)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :AL 1gy7A 76 :PY T0506 102 :L 1gy7A 79 :D T0506 104 :RLT 1gy7A 81 :LVM Number of specific fragments extracted= 3 number of extra gaps= 3 total=20948 # 1m2dA.98.57 read from T0506.t2k.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)R104 (1m2dA)V64 because P (beta_P) conformation "forbidden" or filtered. T0506 98 :DALTLP 1m2dA 58 :ASMMGP T0506 105 :LT 1m2dA 65 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20950 # 1ovnA.98.91 read from T0506.t2k.many.frag # found chain 1ovnA in template set Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ovnA)D101 Warning: unaligning (T0506)A99 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ovnA)D102 Warning: unaligning (T0506)T101 (1ovnA)N104 because D (zeta) conformation "forbidden" or filtered. T0506 100 :L 1ovnA 103 :K T0506 102 :LPRLT 1ovnA 105 :FPSIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=20952 # 1a8d.98.81 read from T0506.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0506)P103 (1a8d)F87 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTL 1a8d 82 :DMFNN T0506 104 :RLT 1a8d 88 :TVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=20954 # 1rx0A.98.188 read from T0506.t2k.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)P103 (1rx0A)S194 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DALTL 1rx0A 189 :GPKGI T0506 104 :RLT 1rx0A 195 :CIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20956 # 1z8kA.98.96 read from T0506.t2k.many.frag # found chain 1z8kA in template set Warning: unaligning (T0506)D98 (1z8kA)Y97 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1z8kA)F98 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1z8kA)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1z8kA)G102 because S (epsilon) conformation "forbidden" or filtered. T0506 101 :TL 1z8kA 100 :DY T0506 104 :RLT 1z8kA 103 :HLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=20958 # 1si6X.98.109 read from T0506.t2k.many.frag # found chain 1si6X in training set Warning: unaligning (T0506)T101 (1si6X)K113 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1si6X)S115 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DAL 1si6X 110 :DDQ T0506 102 :L 1si6X 114 :K T0506 104 :RLT 1si6X 116 :GGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=20961 # 1ayoA.98.16 read from T0506.t2k.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALT 1ayoA 19 :GPKA T0506 105 :LT 1ayoA 26 :FQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20963 # 2fdiA.98.126 read from T0506.t2k.many.frag # found chain 2fdiA in template set T0506 98 :DALTLPRLT 2fdiA 137 :PDLRAPIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=20964 # 1v3eA.98.74 read from T0506.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)L100 (1v3eA)G218 because T (delta_L) conformation "forbidden" or filtered. T0506 98 :DA 1v3eA 216 :DI T0506 101 :TLPRLT 1v3eA 219 :KSYQVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20966 1musA expands to /projects/compbio/data/pdb/1mus.pdb.gz 1musA:Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 806, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 808, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 856, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3018, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3020, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3125, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3127, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3129, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3131, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3133, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3135, because occupancy 0.500 <= existing 0.500 in 1musA Skipped atom 3137, because occupancy 0.500 <= existing 0.500 in 1musA # 1musA.98.272 read from T0506.t2k.many.frag # adding 1musA to template set # found chain 1musA in template set Warning: unaligning (T0506)L100 (1musA)G275 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 (1musA)N276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1musA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1musA)L279 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DA 1musA 273 :KQ T0506 102 :L 1musA 277 :I T0506 105 :LT 1musA 280 :NA Number of specific fragments extracted= 3 number of extra gaps= 2 total=20969 1v04A expands to /projects/compbio/data/pdb/1v04.pdb.gz 1v04A:# 1v04A.98.121 read from T0506.t2k.many.frag # adding 1v04A to template set # found chain 1v04A in template set Warning: unaligning (T0506)T101 (1v04A)N125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1v04A)V127 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DAL 1v04A 122 :DDD T0506 102 :L 1v04A 126 :T T0506 104 :RLT 1v04A 128 :YLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=20972 # 1wrrA.98.24 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)D98 (1wrrA)G25 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1wrrA)Y30 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1wrrA 26 :VQTV T0506 104 :RLT 1wrrA 31 :EMT Number of specific fragments extracted= 2 number of extra gaps= 2 total=20974 # 2f1lA.98.46 read from T0506.t2k.many.frag # found chain 2f1lA in template set T0506 98 :DALTLPRLT 2f1lA 35 :NLLDYRRWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=20975 # 1vl7A.99.92 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T101 (1vl7A)A83 because D (zeta) conformation "forbidden" or filtered. T0506 99 :AL 1vl7A 81 :IF T0506 102 :LPRLTL 1vl7A 84 :RRRLSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20977 # 1qlmA.99.199 read from T0506.t2k.many.frag # found chain 1qlmA in template set T0506 99 :ALTLPRLTL 1qlmA 200 :VTRVKYATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=20978 # 1xdnA.99.100 read from T0506.t2k.many.frag # found chain 1xdnA in training set T0506 99 :ALTLPRLTL 1xdnA 148 :LSRVGRLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=20979 # 1o26A.99.67 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 99 :ALTLPRLTL 1o26A 56 :PFEHIVFTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=20980 # 1z8kA.99.97 read from T0506.t2k.many.frag # found chain 1z8kA in template set Warning: unaligning (T0506)A99 (1z8kA)F98 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1z8kA)G102 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1z8kA)H103 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTL 1z8kA 99 :GDY T0506 105 :LTL 1z8kA 104 :LSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=20982 # 1i8aA.99.70 read from T0506.t2k.many.frag # found chain 1i8aA in template set Warning: unaligning (T0506)R104 (1i8aA)S75 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTLP 1i8aA 70 :PWEQD T0506 105 :LTL 1i8aA 76 :VEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=20984 # 1of5A.99.123 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)L102 (1of5A)G394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALT 1of5A 391 :QIN T0506 104 :RLTL 1of5A 396 :VITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=20986 # 1n7zA.99.31 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1n7zA 32 :PDKN T0506 104 :RLTL 1n7zA 37 :IFIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=20988 # 1xhnA.99.107 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 99 :ALTLPRLTL 1xhnA 108 :SPLCVHIML Number of specific fragments extracted= 1 number of extra gaps= 0 total=20989 # 1uwwA.99.67 read from T0506.t2k.many.frag # found chain 1uwwA in training set Warning: unaligning (T0506)R104 (1uwwA)R73 because D (zeta) conformation "forbidden" or filtered. T0506 99 :ALTLP 1uwwA 68 :WATAP T0506 105 :LTL 1uwwA 74 :LDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20991 # 1w9hA.99.174 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)P103 (1w9hA)S179 because G (3-10) conformation "forbidden" or filtered. T0506 99 :ALTL 1w9hA 175 :PEKG T0506 104 :RLTL 1w9hA 180 :DIII Number of specific fragments extracted= 2 number of extra gaps= 1 total=20993 # 1v3eA.99.75 read from T0506.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)L102 (1v3eA)S220 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALT 1v3eA 217 :IGK T0506 103 :PRLTL 1v3eA 221 :YQVLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=20995 1xdfA expands to /projects/compbio/data/pdb/1xdf.pdb.gz 1xdfA:# 1xdfA.99.90 read from T0506.t2k.many.frag # adding 1xdfA to template set # found chain 1xdfA in template set Warning: unaligning (T0506)T101 (1xdfA)T93 because G (3-10) conformation "forbidden" or filtered. T0506 99 :AL 1xdfA 91 :PD T0506 102 :LPRLTL 1xdfA 94 :IEKISF Number of specific fragments extracted= 2 number of extra gaps= 1 total=20997 # 1kptA.99.90 read from T0506.t2k.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)P103 (1kptA)G95 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1kptA)Q96 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1kptA 91 :DVSR T0506 105 :LTL 1kptA 97 :LTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=20999 1pguA expands to /projects/compbio/data/pdb/1pgu.pdb.gz 1pguA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1pguA.99.124 read from T0506.t2k.many.frag # adding 1pguA to template set # found chain 1pguA in template set Warning: unaligning (T0506)L102 (1pguA)G128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pguA)R129 because G (3-10) conformation "forbidden" or filtered. T0506 99 :ALT 1pguA 125 :DFE T0506 104 :RLTL 1pguA 130 :RLCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21001 # 1n08A.99.107 read from T0506.t2k.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)P103 (1n08A)M112 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1n08A 108 :YEEI T0506 104 :RLTL 1n08A 113 :RVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21003 # 1a8d.99.82 read from T0506.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0506)P103 (1a8d)F87 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1a8d 83 :MFNN T0506 104 :RLTL 1a8d 88 :TVSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21005 # 1gy7A.99.75 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)A99 (1gy7A)P76 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1gy7A 77 :YGD T0506 104 :RLTL 1gy7A 81 :LVMI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21007 # 1xt5A.99.100 read from T0506.t2k.many.frag # found chain 1xt5A in template set Warning: unaligning (T0506)P103 (1xt5A)G105 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1xt5A 101 :PQDG T0506 104 :RLTL 1xt5A 106 :RYWC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21009 1p30A expands to /projects/compbio/data/pdb/1p30.pdb.gz 1p30A:# 1p30A.99.94 read from T0506.t2k.many.frag # adding 1p30A to template set # found chain 1p30A in template set Warning: unaligning (T0506)P103 (1p30A)T98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1p30A)Y99 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1p30A 94 :DMAS T0506 105 :LTL 1p30A 100 :FDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21011 # 1jidA.99.75 read from T0506.t2k.many.frag # found chain 1jidA in training set T0506 99 :ALTLPRLTL 1jidA 76 :VQYRGRVRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21012 # 2f1lA.99.47 read from T0506.t2k.many.frag # found chain 2f1lA in template set T0506 99 :ALTLPRLTL 2f1lA 36 :LLDYRRWTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21013 # 1sluA.99.32 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)A99 (1sluA)E33 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1sluA)K37 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTL 1sluA 34 :STL T0506 104 :RLTL 1sluA 38 :VELL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21015 # 1m2dA.99.58 read from T0506.t2k.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)P103 (1m2dA)P63 because C (cis) conformation "forbidden" or filtered. T0506 99 :ALTL 1m2dA 59 :SMMG T0506 104 :RLTL 1m2dA 64 :VVVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21017 # 1xruA.99.157 read from T0506.t2k.many.frag # found chain 1xruA in template set Warning: unaligning (T0506)L102 (1xruA)S158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1xruA)N159 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1xruA)R161 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALT 1xruA 155 :NLT T0506 104 :R 1xruA 160 :R T0506 106 :TL 1xruA 162 :TI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21020 # 1ayoA.99.17 read from T0506.t2k.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALT 1ayoA 20 :PKA T0506 104 :R 1ayoA 25 :S T0506 106 :TL 1ayoA 27 :QI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21023 # 1cv8.99.114 read from T0506.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0506)P103 (1cv8)G119 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1cv8 115 :GMHA T0506 104 :RLTL 1cv8 120 :HAMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21025 # 1wvhA.99.103 read from T0506.t2k.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)P103 (1wvhA)N1712 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1wvhA 1708 :STTD T0506 104 :RLTL 1wvhA 1713 :VCHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21027 # 1musA.99.273 read from T0506.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0506)T101 (1musA)N276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1musA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1musA)L279 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :AL 1musA 274 :QG T0506 102 :L 1musA 277 :I T0506 105 :LTL 1musA 280 :NAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21030 1szqA expands to /projects/compbio/data/pdb/1szq.pdb.gz 1szqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1szqA.99.313 read from T0506.t2k.many.frag # adding 1szqA to template set # found chain 1szqA in template set Warning: unaligning (T0506)P103 (1szqA)E318 because G (3-10) conformation "forbidden" or filtered. T0506 99 :ALTL 1szqA 314 :AADI T0506 104 :RLTL 1szqA 319 :KVTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21032 # 1vl7A.100.93 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 100 :LTLPRLTLV 1vl7A 82 :FARRRLSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21033 # 1xdnA.100.101 read from T0506.t2k.many.frag # found chain 1xdnA in training set T0506 100 :LTLPRLTLV 1xdnA 149 :SRVGRLVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21034 # 1w9hA.100.175 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)P103 (1w9hA)S179 because G (3-10) conformation "forbidden" or filtered. T0506 100 :LTL 1w9hA 176 :EKG T0506 104 :RLTLV 1w9hA 180 :DIIIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21036 # 1xdfA.100.91 read from T0506.t2k.many.frag # found chain 1xdfA in template set T0506 100 :LTLPRLTLV 1xdfA 92 :DTIEKISFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21037 # 1xhnA.100.108 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 100 :LTLPRLTLV 1xhnA 109 :PLCVHIMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21038 # 1n7zA.100.32 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1n7zA 33 :DKN T0506 104 :RLTLV 1n7zA 37 :IFITF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21040 # 1of5A.100.124 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)T101 (1of5A)N393 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1of5A)G394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :L 1of5A 392 :I T0506 104 :RLTLV 1of5A 396 :VITLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21042 # 1pguA.100.125 read from T0506.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)P103 (1pguA)R129 because G (3-10) conformation "forbidden" or filtered. T0506 100 :LTL 1pguA 126 :FEG T0506 104 :RLTLV 1pguA 130 :RLCVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21044 # 1se8A.100.193 read from T0506.t2k.many.frag # found chain 1se8A in training set T0506 100 :LTLPRLTLV 1se8A 194 :RKGDPVMIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=21045 # 1qlmA.100.200 read from T0506.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)L107 (1qlmA)G208 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTLPRLT 1qlmA 201 :TRVKYAT T0506 108 :V 1qlmA 209 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=21047 # 1pbyB.100.90 read from T0506.t2k.many.frag # found chain 1pbyB in training set T0506 100 :LTLPRLTLV 1pbyB 91 :PDGKTLAIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21048 # 1z8kA.100.98 read from T0506.t2k.many.frag # found chain 1z8kA in template set Warning: unaligning (T0506)L100 (1z8kA)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1z8kA)H103 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLP 1z8kA 100 :DYG T0506 105 :LTLV 1z8kA 104 :LSVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=21050 # 1gy7A.100.76 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)T101 (1gy7A)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :L 1gy7A 77 :Y T0506 102 :L 1gy7A 79 :D T0506 104 :RLTLV 1gy7A 81 :LVMIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=21053 2cveA expands to /projects/compbio/data/pdb/2cve.pdb.gz 2cveA:# 2cveA.100.80 read from T0506.t2k.many.frag # adding 2cveA to template set # found chain 2cveA in template set Warning: unaligning (T0506)P103 (2cveA)D84 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (2cveA)R85 because L (left) conformation "forbidden" or filtered. T0506 100 :LTL 2cveA 81 :QGL T0506 105 :LTLV 2cveA 86 :VAVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21055 # 1o26A.100.68 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 100 :LTLPRLTLV 1o26A 57 :FEHIVFTFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21056 2a74A expands to /projects/compbio/data/pdb/2a74.pdb.gz 2a74A:# 2a74A.100.78 read from T0506.t2k.many.frag # adding 2a74A to template set # found chain 2a74A in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a74A)R80 Warning: unaligning (T0506)L102 (2a74A)N81 because S (epsilon) conformation "forbidden" or filtered. T0506 103 :PRLTLV 2a74A 82 :KFVTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21057 # 1p30A.100.95 read from T0506.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)P103 (1p30A)T98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1p30A)Y99 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTL 1p30A 95 :MAS T0506 105 :LTLV 1p30A 100 :FDIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21059 1kjlA expands to /projects/compbio/data/pdb/1kjl.pdb.gz 1kjlA:Skipped atom 160, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 162, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 164, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 166, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 168, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 170, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 172, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 174, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 981, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 983, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 985, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1073, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1079, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1081, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1113, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1115, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1117, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1119, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 1kjlA Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 1kjlA # 1kjlA.100.22 read from T0506.t2k.many.frag # adding 1kjlA to template set # found chain 1kjlA in template set Warning: unaligning (T0506)L100 (1kjlA)V127 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1kjlA)R129 because T (delta_L) conformation "forbidden" or filtered. T0506 101 :T 1kjlA 128 :P T0506 103 :PRLTLV 1kjlA 130 :MLITIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21061 # 1v3eA.100.76 read from T0506.t2k.many.frag # found chain 1v3eA in template set T0506 100 :LTLPRLTLV 1v3eA 218 :GKSYQVLQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21062 1wocA expands to /projects/compbio/data/pdb/1woc.pdb.gz 1wocA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wocA.100.65 read from T0506.t2k.many.frag # adding 1wocA to template set # found chain 1wocA in template set Warning: unaligning (T0506)L100 (1wocA)T67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1wocA)G69 because T (delta_L) conformation "forbidden" or filtered. T0506 101 :T 1wocA 68 :V T0506 103 :PRLTLV 1wocA 70 :SRITVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=21064 # 1v0jA.100.305 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)P103 (1v0jA)K309 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1v0jA 306 :PTD T0506 104 :RLTLV 1v0jA 310 :TVIMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21066 # 1a8d.100.83 read from T0506.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0506)P103 (1a8d)F87 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTL 1a8d 84 :FNN T0506 104 :RLTLV 1a8d 88 :TVSFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=21068 1quqA expands to /projects/compbio/data/pdb/1quq.pdb.gz 1quqA:# 1quqA.100.26 read from T0506.t2k.many.frag # adding 1quqA to template set # found chain 1quqA in template set T0506 100 :LTLPRLTLV 1quqA 69 :VEISQVTIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21069 # 1x6oA.100.61 read from T0506.t2k.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)L102 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1x6oA)H56 Warning: unaligning (T0506)P103 (1x6oA)A57 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLV 1x6oA 58 :KVSIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21070 # 1vpmA.100.80 read from T0506.t2k.many.frag # found chain 1vpmA in training set T0506 100 :LTLPRLTLV 1vpmA 69 :TVGDALELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21071 # 1i8aA.100.71 read from T0506.t2k.many.frag # found chain 1i8aA in template set Warning: unaligning (T0506)R104 (1i8aA)S75 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTLP 1i8aA 71 :WEQD T0506 105 :LTLV 1i8aA 76 :VEIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21073 # 1cv8.100.115 read from T0506.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0506)P103 (1cv8)G119 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1cv8 116 :MHA T0506 104 :RLTLV 1cv8 120 :HAMAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21075 2bpa2 expands to /projects/compbio/data/pdb/2bpa.pdb.gz 2bpa2:# 2bpa2.100.67 read from T0506.t2k.many.frag # adding 2bpa2 to template set # found chain 2bpa2 in template set Warning: unaligning (T0506)L100 (2bpa2)A68 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2bpa2)Q71 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 2bpa2 69 :AN T0506 104 :RLTLV 2bpa2 72 :VVSVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21077 # 1n08A.100.108 read from T0506.t2k.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)L100 (1n08A)E109 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1n08A)M112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V108 (1n08A)L117 because G (3-10) conformation "forbidden" or filtered. T0506 101 :TL 1n08A 110 :EI T0506 104 :RLTL 1n08A 113 :RVIV Number of specific fragments extracted= 2 number of extra gaps= 3 total=21079 # 1ayoA.100.18 read from T0506.t2k.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LT 1ayoA 21 :KA T0506 104 :R 1ayoA 25 :S T0506 106 :TLV 1ayoA 27 :QIS Number of specific fragments extracted= 3 number of extra gaps= 2 total=21082 # 1vl7A.101.94 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G109 (1vl7A)C91 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TLPRLTLV 1vl7A 83 :ARRRLSFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=21083 # 1xhnA.101.109 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G109 (1xhnA)G118 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLPRLTLV 1xhnA 110 :LCVHIMLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=21084 # 1xdnA.101.102 read from T0506.t2k.many.frag # found chain 1xdnA in training set T0506 101 :TLPRLTLVG 1xdnA 150 :RVGRLVLNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21085 # 1w9hA.101.176 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)P103 (1w9hA)S179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TL 1w9hA 177 :KG T0506 104 :RLTLV 1w9hA 180 :DIIIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21087 # 1of5A.101.125 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)T101 (1of5A)N393 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1of5A 394 :G T0506 104 :RLTLVG 1of5A 396 :VITLHG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21089 # 1xdfA.101.92 read from T0506.t2k.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLP 1xdfA 93 :TIE T0506 105 :LTLVG 1xdfA 97 :ISFET Number of specific fragments extracted= 2 number of extra gaps= 1 total=21091 # 1se8A.101.194 read from T0506.t2k.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)L102 (1se8A)G196 because T (delta_L) conformation "forbidden" or filtered. T0506 101 :T 1se8A 195 :K T0506 103 :PRLTLVG 1se8A 197 :DPVMIMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21093 # 1n7zA.101.33 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1n7zA)G42 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TL 1n7zA 34 :KN T0506 104 :RLTLV 1n7zA 37 :IFITF Number of specific fragments extracted= 2 number of extra gaps= 2 total=21095 # 1quqA.101.27 read from T0506.t2k.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)L102 (1quqA)I71 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :T 1quqA 70 :E T0506 103 :PRLTLVG 1quqA 72 :SQVTIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21097 # 1gy7A.101.77 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)T101 (1gy7A)G78 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1gy7A 79 :D T0506 104 :RLTLVG 1gy7A 81 :LVMITG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21099 # 1wocA.101.66 read from T0506.t2k.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)L102 (1wocA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1wocA)I72 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :T 1wocA 68 :V T0506 103 :PR 1wocA 70 :SR T0506 106 :TLVG 1wocA 73 :TVQG Number of specific fragments extracted= 3 number of extra gaps= 2 total=21102 # 1qlmA.101.201 read from T0506.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)L107 (1qlmA)G208 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLPRLT 1qlmA 202 :RVKYAT T0506 108 :VG 1qlmA 209 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21104 # 2cveA.101.81 read from T0506.t2k.many.frag # found chain 2cveA in template set Warning: unaligning (T0506)T101 (2cveA)G82 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2cveA)D84 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (2cveA)V90 because D (zeta) conformation "forbidden" or filtered. T0506 102 :L 2cveA 83 :L T0506 104 :RLTLV 2cveA 85 :RVAVL Number of specific fragments extracted= 2 number of extra gaps= 3 total=21106 # 1p30A.101.96 read from T0506.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)P103 (1p30A)T98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1p30A)G104 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TL 1p30A 96 :AS T0506 104 :RLTLV 1p30A 99 :YFDIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=21108 # 1musA.101.275 read from T0506.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0506)T101 (1musA)N276 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1musA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1musA)L279 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :L 1musA 277 :I T0506 105 :LTLVG 1musA 280 :NAVLA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21110 # 1pguA.101.126 read from T0506.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)L102 (1pguA)G128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pguA)R129 because G (3-10) conformation "forbidden" or filtered. T0506 101 :T 1pguA 127 :E T0506 104 :RLTLVG 1pguA 130 :RLCVVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21112 # 1pbyB.101.91 read from T0506.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)G109 (1pbyB)E100 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TLPRLTLV 1pbyB 92 :DGKTLAIY Number of specific fragments extracted= 1 number of extra gaps= 1 total=21113 # 1kjlA.101.23 read from T0506.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0506)L102 (1kjlA)R129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1kjlA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :T 1kjlA 128 :P T0506 103 :PRLTLV 1kjlA 130 :MLITIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21115 # 2a74A.101.79 read from T0506.t2k.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a74A)R80 T0506 102 :LPRLTLVG 2a74A 81 :NKFVTVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21116 1nqeA expands to /projects/compbio/data/pdb/1nqe.pdb.gz 1nqeA:# 1nqeA.101.161 read from T0506.t2k.many.frag # adding 1nqeA to template set # found chain 1nqeA in template set Warning: unaligning (T0506)P103 (1nqeA)T164 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 1nqeA 162 :DK T0506 104 :RLTLVG 1nqeA 165 :RVTLLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21118 # 1v3eA.101.77 read from T0506.t2k.many.frag # found chain 1v3eA in template set T0506 101 :TLPRLTLVG 1v3eA 219 :KSYQVLQIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21119 # 1vpmA.101.81 read from T0506.t2k.many.frag # found chain 1vpmA in training set T0506 101 :TLPRLTLVG 1vpmA 70 :VGDALELEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21120 # 1x6oA.101.62 read from T0506.t2k.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)L102 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1x6oA)H56 Warning: unaligning (T0506)P103 (1x6oA)A57 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVG 1x6oA 58 :KVSIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21121 # 1o26A.101.69 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 101 :TLPRLTLVG 1o26A 58 :EHIVFTFHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21122 # 1v0jA.101.306 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)P103 (1v0jA)K309 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 1v0jA 307 :TD T0506 104 :RLTLVG 1v0jA 310 :TVIMRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21124 1szwA expands to /projects/compbio/data/pdb/1szw.pdb.gz 1szwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1szwA.101.146 read from T0506.t2k.many.frag # adding 1szwA to template set # found chain 1szwA in template set Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1szwA)L133 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TLP 1szwA 125 :ALK T0506 105 :LTLV 1szwA 129 :NAFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=21126 1w99A expands to /projects/compbio/data/pdb/1w99.pdb.gz 1w99A:Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 128, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 130, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 140, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 345, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 815, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 816, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 818, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 819, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 821, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 822, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 824, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 825, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 827, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 828, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 830, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 831, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 833, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 834, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 1133, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1135, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1139, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1141, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1143, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1145, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1147, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1149, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1587, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1589, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1593, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1595, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1597, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1599, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1601, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1675, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1677, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1679, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1681, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1683, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1685, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1687, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1689, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 1691, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2218, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2219, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2221, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2222, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2224, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2225, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2227, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2228, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2230, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2231, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2233, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2234, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2340, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2342, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2344, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2346, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2348, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2350, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2543, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2545, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2547, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2549, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2551, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2553, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2704, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2705, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2707, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2708, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2710, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2711, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2713, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2714, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2716, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2717, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2719, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2720, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2764, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2766, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2768, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2770, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2772, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2774, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2776, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2799, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2800, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2802, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2803, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2805, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2806, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2808, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2809, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2811, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2812, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2814, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2815, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2817, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2818, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2820, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2821, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2823, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2824, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 2983, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2985, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2987, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2989, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2991, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2993, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 2995, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3058, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3060, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3062, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3064, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3066, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3068, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3114, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3115, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3117, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3118, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3120, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3121, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3123, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3124, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3126, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3127, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3129, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3130, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3132, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3133, because occupancy 0.330 <= existing 0.330 in 1w99A Skipped atom 3203, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3205, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3207, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3209, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3211, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3213, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3262, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3264, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3266, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3268, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3270, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3272, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3274, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3276, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3278, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3343, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3345, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3347, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3349, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3351, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3353, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3355, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3357, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3359, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3361, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3363, because occupancy 0.500 <= existing 0.500 in 1w99A Skipped atom 3365, because occupancy 0.500 <= existing 0.500 in 1w99A # 1w99A.101.433 read from T0506.t2k.many.frag # adding 1w99A to template set # found chain 1w99A in template set T0506 101 :TLPRLTLVG 1w99A 517 :LSGRMEIQC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21127 # 1a8d.101.84 read from T0506.t2k.many.frag # found chain 1a8d in training set Warning: unaligning (T0506)P103 (1a8d)F87 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TL 1a8d 85 :NN T0506 104 :RLTLVG 1a8d 88 :TVSFWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21129 # 1cv8.101.116 read from T0506.t2k.many.frag # found chain 1cv8 in training set Warning: unaligning (T0506)P103 (1cv8)G119 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 1cv8 117 :HA T0506 104 :RLTLVG 1cv8 120 :HAMAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21131 # 2bpa2.101.68 read from T0506.t2k.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0506)P103 (2bpa2)Q71 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 2bpa2 69 :AN T0506 104 :RLTLVG 2bpa2 72 :VVSVGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21133 # 1vl7A.102.95 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)R104 (1vl7A)R86 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LP 1vl7A 84 :RR T0506 105 :LTLVGR 1vl7A 87 :LSFDCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21135 # 1xhnA.102.110 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 102 :LPRLTLVGR 1xhnA 111 :CVHIMLSGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21136 # 1xdnA.102.103 read from T0506.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0506)G109 (1xdnA)G158 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LPRLTLV 1xdnA 151 :VGRLVLN T0506 110 :R 1xdnA 159 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21138 # 1of5A.102.126 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1of5A 394 :G T0506 104 :RLTLVGR 1of5A 396 :VITLHGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21140 # 1se8A.102.195 read from T0506.t2k.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)G109 (1se8A)G203 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LPRLTLV 1se8A 196 :GDPVMIM T0506 110 :R 1se8A 204 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=21142 # 1xdfA.102.93 read from T0506.t2k.many.frag # found chain 1xdfA in template set T0506 102 :LPRLTLVGR 1xdfA 94 :IEKISFETK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21143 # 1w9hA.102.177 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)P103 (1w9hA)S179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1w9hA)G186 because S (epsilon) conformation "forbidden" or filtered. T0506 102 :L 1w9hA 178 :G T0506 104 :RLTLV 1w9hA 180 :DIIIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21145 # 1gy7A.102.78 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1gy7A 79 :D T0506 104 :RLTLVGR 1gy7A 81 :LVMITGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21147 # 1nqeA.102.162 read from T0506.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0506)L102 (1nqeA)K163 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1nqeA)T164 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1nqeA 165 :RVTLLGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=21148 # 1quqA.102.28 read from T0506.t2k.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)L102 (1quqA)I71 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLVGR 1quqA 72 :SQVTIVGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21149 # 1wocA.102.67 read from T0506.t2k.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)L102 (1wocA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1wocA)I72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1wocA)G76 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PR 1wocA 70 :SR T0506 106 :TLV 1wocA 73 :TVQ T0506 110 :R 1wocA 77 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=21152 # 1musA.102.276 read from T0506.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0506)P103 (1musA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1musA)L279 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :L 1musA 277 :I T0506 105 :LTLVGR 1musA 280 :NAVLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21154 # 1n7zA.102.34 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1n7zA)R43 because L (left) conformation "forbidden" or filtered. T0506 102 :L 1n7zA 35 :N T0506 104 :RLTLVG 1n7zA 37 :IFITFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21156 # 1kjlA.102.24 read from T0506.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0506)L102 (1kjlA)R129 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1kjlA)G136 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLV 1kjlA 130 :MLITIL T0506 110 :R 1kjlA 137 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=21158 # 1v0jA.102.307 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)P103 (1v0jA)K309 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1v0jA 308 :D T0506 104 :RLTLVGR 1v0jA 310 :TVIMREY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21160 # 1pbyB.102.92 read from T0506.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)L102 (1pbyB)G93 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1pbyB)E100 because E (beta_S) conformation "forbidden" or filtered. T0506 103 :PRLTLV 1pbyB 94 :KTLAIY T0506 110 :R 1pbyB 101 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=21162 # 1ty9A.102.114 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P103 (1ty9A)Q116 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1ty9A 115 :S T0506 104 :RLTLVGR 1ty9A 117 :QIILNGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21164 # 1qs1A.102.252 read from T0506.t2k.many.frag # found chain 1qs1A in training set T0506 102 :LPRLTLVGR 1qs1A 253 :VECLQIEGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21165 # 1p30A.102.97 read from T0506.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)P103 (1p30A)T98 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1p30A 97 :S T0506 104 :RLTLVGR 1p30A 99 :YFDIRGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21167 # 2a74A.102.80 read from T0506.t2k.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)G109 (2a74A)A88 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :LPRLTLV 2a74A 81 :NKFVTVQ T0506 110 :R 2a74A 89 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=21169 # 1v3eA.102.78 read from T0506.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)L102 (1v3eA)S220 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLVGR 1v3eA 221 :YQVLQIGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21170 # 2asfA.102.78 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)R104 (2asfA)W81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (2asfA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (2asfA)R87 because P (beta_P) conformation "forbidden" or filtered. T0506 102 :LP 2asfA 79 :AR T0506 105 :LTLV 2asfA 82 :LSLE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21172 # 1vpmA.102.82 read from T0506.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LPRLTLVG 1vpmA 71 :GDALELEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=21173 # 1o26A.102.70 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 102 :LPRLTLVGR 1o26A 59 :HIVFTFHVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21174 # 1qlmA.102.202 read from T0506.t2k.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)L107 (1qlmA)G208 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LPRLT 1qlmA 203 :VKYAT T0506 108 :VGR 1qlmA 209 :TAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21176 # 1pguA.102.127 read from T0506.t2k.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)L102 (1pguA)G128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pguA)R129 because G (3-10) conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1pguA 130 :RLCVVGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21177 1wj9A expands to /projects/compbio/data/pdb/1wj9.pdb.gz 1wj9A:# 1wj9A.102.170 read from T0506.t2k.many.frag # adding 1wj9A to template set # found chain 1wj9A in template set T0506 102 :LPRLTLVGR 1wj9A 171 :VQAVLFEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21178 # 1szwA.102.147 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LP 1szwA 126 :LK T0506 105 :LTLVGR 1szwA 129 :NAFTLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21180 # 1f46A.102.74 read from T0506.t2k.many.frag # found chain 1f46A in training set Warning: unaligning (T0506)R104 (1f46A)G81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1f46A)M86 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :LP 1f46A 79 :TP T0506 105 :LTLV 1f46A 82 :VTIF T0506 110 :R 1f46A 87 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=21183 1vs0A expands to /projects/compbio/data/pdb/1vs0.pdb.gz 1vs0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O5' for alphabet: pdb_atoms Bad short name: C5' for alphabet: pdb_atoms Bad short name: C4' for alphabet: pdb_atoms Bad short name: O4' for alphabet: pdb_atoms Bad short name: C3' for alphabet: pdb_atoms Bad short name: O3' for alphabet: pdb_atoms Bad short name: C2' for alphabet: pdb_atoms Bad short name: O2' for alphabet: pdb_atoms Bad short name: C1' for alphabet: pdb_atoms Bad short name: N9 for alphabet: pdb_atoms Bad short name: C8 for alphabet: pdb_atoms Bad short name: N7 for alphabet: pdb_atoms Bad short name: C5 for alphabet: pdb_atoms Bad short name: C4 for alphabet: pdb_atoms Bad short name: N3 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: N1 for alphabet: pdb_atoms Bad short name: C6 for alphabet: pdb_atoms Bad short name: N6 for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1189, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1191, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1199, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1201, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1203, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1205, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1232, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1354, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 1356, because occupancy 0.500 <= existing 0.500 in 1vs0A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2276, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2278, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2280, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2282, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2284, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2286, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2288, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2290, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2292, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2294, because occupancy 0.500 <= existing 0.500 in 1vs0A Skipped atom 2296, because occupancy 0.500 <= existing 0.500 in 1vs0A # 1vs0A.102.72 read from T0506.t2k.many.frag # adding 1vs0A to template set # found chain 1vs0A in template set Warning: unaligning (T0506)P103 (1vs0A)H523 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1vs0A 522 :D T0506 104 :RLTLVGR 1vs0A 524 :HVVLDGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21185 # 1vl7A.103.96 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 103 :PRLTLVGRA 1vl7A 85 :RRLSFDCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21186 # 1xhnA.103.111 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 103 :PRLTLVGRA 1xhnA 112 :VHIMLSGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21187 # 1se8A.103.196 read from T0506.t2k.many.frag # found chain 1se8A in training set T0506 103 :PRLTLVGRA 1se8A 197 :DPVMIMGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21188 # 1of5A.103.127 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1of5A)F403 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1of5A 396 :VITLHGF Number of specific fragments extracted= 1 number of extra gaps= 2 total=21189 # 1xdnA.103.104 read from T0506.t2k.many.frag # found chain 1xdnA in training set T0506 103 :PRLTLVGRA 1xdnA 152 :GRLVLNGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21190 # 1nqeA.103.163 read from T0506.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0506)P103 (1nqeA)T164 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1nqeA 165 :RVTLLGDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=21191 # 1w9hA.103.178 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)P103 (1w9hA)S179 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1w9hA 180 :DIIIG T0506 110 :RA 1w9hA 186 :GA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21193 # 1gy7A.103.79 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1gy7A 81 :LVMITGDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21194 # 1quqA.103.29 read from T0506.t2k.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)G109 (1quqA)G78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1quqA)I80 because P (beta_P) conformation "forbidden" or filtered. T0506 103 :PRLTLV 1quqA 72 :SQVTIV T0506 110 :R 1quqA 79 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=21196 # 1ty9A.103.115 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P103 (1ty9A)Q116 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1ty9A 117 :QIILNGQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21197 # 1xdfA.103.94 read from T0506.t2k.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1xdfA)T101 because E (beta_S) conformation "forbidden" or filtered. T0506 103 :P 1xdfA 95 :E T0506 105 :LTLV 1xdfA 97 :ISFE T0506 110 :RA 1xdfA 102 :KL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21200 # 1wocA.103.68 read from T0506.t2k.many.frag # found chain 1wocA in template set T0506 103 :PRLTLVGRA 1wocA 70 :SRITVQGFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21201 # 1v0jA.103.308 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)P103 (1v0jA)K309 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1v0jA 310 :TVIMREYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=21202 # 2asfA.103.79 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)R104 (2asfA)W81 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :P 2asfA 80 :R T0506 105 :LTLVGRA 2asfA 82 :LSLEGRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21204 # 1musA.103.277 read from T0506.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0506)P103 (1musA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1musA)L279 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1musA 280 :NAVLAEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21205 # 1kjlA.103.25 read from T0506.t2k.many.frag # found chain 1kjlA in template set T0506 103 :PRLTLVGRA 1kjlA 130 :MLITILGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21206 # 1n7zA.103.35 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)P103 (1n7zA)T36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1n7zA)G42 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1n7zA 37 :IFITF T0506 110 :RA 1n7zA 43 :RS Number of specific fragments extracted= 2 number of extra gaps= 2 total=21208 # 1qs1A.103.253 read from T0506.t2k.many.frag # found chain 1qs1A in training set T0506 103 :PRLTLVGRA 1qs1A 254 :ECLQIEGTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21209 # 1pbyB.103.93 read from T0506.t2k.many.frag # found chain 1pbyB in training set T0506 103 :PRLTLVGRA 1pbyB 94 :KTLAIYESP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21210 # 1flmA.103.80 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)P103 (1flmA)T81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1flmA)G82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1flmA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1flmA 83 :FLIR T0506 110 :RA 1flmA 88 :SA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21212 1b7yA expands to /projects/compbio/data/pdb/1b7y.pdb.gz 1b7yA:# 1b7yA.103.193 read from T0506.t2k.many.frag # adding 1b7yA to template set # found chain 1b7yA in template set Warning: unaligning (T0506)P103 (1b7yA)F194 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1b7yA)R201 because P (beta_P) conformation "forbidden" or filtered. T0506 104 :RLTLVG 1b7yA 195 :RIVVPG T0506 111 :A 1b7yA 202 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=21214 # 1vpmA.103.83 read from T0506.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLVG 1vpmA 72 :DALELEG T0506 111 :A 1vpmA 80 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=21216 # 1v3eA.103.79 read from T0506.t2k.many.frag # found chain 1v3eA in template set T0506 103 :PRLTLVGRA 1v3eA 221 :YQVLQIGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=21217 # 1p30A.103.98 read from T0506.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)P103 (1p30A)T98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1p30A)Y99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1p30A)G104 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1p30A 100 :FDIR T0506 110 :RA 1p30A 105 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21219 # 1wj9A.103.171 read from T0506.t2k.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLV 1wj9A 172 :QAVLFE T0506 110 :RA 1wj9A 179 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21221 # 2a74A.103.81 read from T0506.t2k.many.frag # found chain 2a74A in template set T0506 103 :PRLTLVGRA 2a74A 82 :KFVTVQATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21222 # 1sluA.103.36 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)P103 (1sluA)K37 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1sluA 38 :VELLIGQT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21223 # 1vs0A.103.73 read from T0506.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0506)P103 (1vs0A)H523 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1vs0A 524 :HVVLDGEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21224 # 1w99A.103.435 read from T0506.t2k.many.frag # found chain 1w99A in template set T0506 103 :PRLTLVGRA 1w99A 519 :GRMEIQCKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21225 # 1o26A.103.71 read from T0506.t2k.many.frag # found chain 1o26A in training set T0506 103 :PRLTLVGRA 1o26A 60 :IVFTFHVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21226 # 1xhnA.104.112 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 104 :RLTLVGRAD 1xhnA 113 :HIMLSGTVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21227 # 1se8A.104.197 read from T0506.t2k.many.frag # found chain 1se8A in training set T0506 104 :RLTLVGRAD 1se8A 198 :PVMIMGRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21228 # 1vl7A.104.97 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 104 :RLTLVGRAD 1vl7A 86 :RLSFDCTAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21229 # 1ty9A.104.116 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)G109 (1ty9A)G122 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1ty9A 117 :QIILN T0506 110 :RAD 1ty9A 123 :QAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21231 # 1nqeA.104.164 read from T0506.t2k.many.frag # found chain 1nqeA in template set T0506 104 :RLTLVGRAD 1nqeA 165 :RVTLLGDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21232 # 2asfA.104.80 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)R104 (2asfA)W81 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRAD 2asfA 82 :LSLEGRAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21233 # 1quqA.104.30 read from T0506.t2k.many.frag # found chain 1quqA in template set T0506 104 :RLTLVGRAD 1quqA 73 :QVTIVGIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21234 # 1n7zA.104.36 read from T0506.t2k.many.frag # found chain 1n7zA in template set T0506 104 :RLTLVGRAD 1n7zA 37 :IFITFGRSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21235 # 1w9hA.104.179 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1w9hA)G186 because S (epsilon) conformation "forbidden" or filtered. T0506 104 :RLTLV 1w9hA 180 :DIIIG T0506 111 :AD 1w9hA 187 :AT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21237 # 1gy7A.104.80 read from T0506.t2k.many.frag # found chain 1gy7A in training set T0506 104 :RLTLVGRAD 1gy7A 81 :LVMITGDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21238 # 1of5A.104.128 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)A111 (1of5A)F403 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1of5A 396 :VITLHGF T0506 112 :D 1of5A 404 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21240 # 1flmA.104.81 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R104 (1flmA)G82 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRAD 1flmA 83 :FLIRGSAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21241 # 1v0jA.104.309 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 T0506 104 :RLTLVGRA 1v0jA 310 :TVIMREYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=21242 # 1sluA.104.37 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)G109 (1sluA)G43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1sluA)L46 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLV 1sluA 38 :VELLI T0506 110 :RA 1sluA 44 :QT Number of specific fragments extracted= 2 number of extra gaps= 2 total=21244 # 1xdnA.104.105 read from T0506.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0506)D112 (1xdnA)F161 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1xdnA 153 :RLVLNGEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21245 # 1b7yA.104.194 read from T0506.t2k.many.frag # found chain 1b7yA in template set T0506 104 :RLTLVGRAD 1b7yA 195 :RIVVPGRVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21246 # 1qs1A.104.254 read from T0506.t2k.many.frag # found chain 1qs1A in training set T0506 104 :RLTLVGRAD 1qs1A 255 :CLQIEGTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21247 # 1xdfA.104.95 read from T0506.t2k.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1xdfA)T101 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLV 1xdfA 97 :ISFE T0506 110 :RAD 1xdfA 102 :KLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=21249 # 1wj9A.104.172 read from T0506.t2k.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)D112 (1wj9A)E181 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1wj9A 173 :AVLFEGRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21250 # 1vpmA.104.84 read from T0506.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)G109 (1vpmA)G78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1vpmA 73 :ALELE T0506 111 :AD 1vpmA 80 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21252 # 1wocA.104.69 read from T0506.t2k.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)L105 (1wocA)I72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wocA)I78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wocA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :R 1wocA 71 :R T0506 106 :TLVGR 1wocA 73 :TVQGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=21254 # 1musA.104.278 read from T0506.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0506)R104 (1musA)L279 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRAD 1musA 280 :NAVLAEEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21255 # 1v3eA.104.80 read from T0506.t2k.many.frag # found chain 1v3eA in template set T0506 104 :RLTLVGRAD 1v3eA 222 :QVLQIGIIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21256 # 1kjlA.104.26 read from T0506.t2k.many.frag # found chain 1kjlA in template set T0506 104 :RLTLVGRAD 1kjlA 131 :LITILGTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21257 1quqB expands to /projects/compbio/data/pdb/1quq.pdb.gz 1quqB:# 1quqB.104.23 read from T0506.t2k.many.frag # adding 1quqB to template set # found chain 1quqB in template set Warning: unaligning (T0506)L105 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :R 1quqB 24 :P T0506 106 :TLVGRAD 1quqB 26 :CFVGRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21259 # 1vs0A.104.74 read from T0506.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0506)G109 (1vs0A)G529 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1vs0A 524 :HVVLD T0506 110 :RAD 1vs0A 530 :EAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21261 1qd6C expands to /projects/compbio/data/pdb/1qd6.pdb.gz 1qd6C:# 1qd6C.104.191 read from T0506.t2k.many.frag # adding 1qd6C to template set # found chain 1qd6C in template set Warning: unaligning (T0506)R104 (1qd6C)G221 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1qd6C)G222 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRAD 1qd6C 223 :AELGLSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=21262 # 1pbyB.104.94 read from T0506.t2k.many.frag # found chain 1pbyB in training set T0506 104 :RLTLVGRAD 1pbyB 95 :TLAIYESPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21263 # 1w99A.104.436 read from T0506.t2k.many.frag # found chain 1w99A in template set T0506 104 :RLTLVGRAD 1w99A 520 :RMEIQCKTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21264 1bcpD expands to /projects/compbio/data/pdb/1bcp.pdb.gz 1bcpD:# 1bcpD.104.26 read from T0506.t2k.many.frag # adding 1bcpD to template set # found chain 1bcpD in template set Warning: unaligning (T0506)L105 (1bcpD)M28 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :R 1bcpD 27 :R T0506 106 :TLVGRAD 1bcpD 29 :LVCGIAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21266 # 1xhnA.105.113 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 105 :LTLVGRADR 1xhnA 114 :IMLSGTVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21267 # 1se8A.105.198 read from T0506.t2k.many.frag # found chain 1se8A in training set T0506 105 :LTLVGRADR 1se8A 199 :VMIMGRLVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21268 # 1ty9A.105.117 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A111 (1ty9A)A124 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLVGR 1ty9A 118 :IILNGQ T0506 112 :DR 1ty9A 125 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21270 # 1vl7A.105.98 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A111 (1vl7A)A93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1vl7A)T94 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGR 1vl7A 87 :LSFDCT T0506 113 :R 1vl7A 95 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=21272 # 2asfA.105.81 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)D112 (2asfA)A89 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 2asfA 82 :LSLEGRA T0506 113 :R 2asfA 90 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=21274 # 1vpmA.105.85 read from T0506.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vpmA)H82 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVG 1vpmA 74 :LELEG T0506 111 :AD 1vpmA 80 :VT Number of specific fragments extracted= 2 number of extra gaps= 2 total=21276 # 1nqeA.105.165 read from T0506.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0506)D112 (1nqeA)A173 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1nqeA 166 :VTLLGDY T0506 113 :R 1nqeA 174 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=21278 # 1flmA.105.82 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 105 :LTLVGRADR 1flmA 83 :FLIRGSAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21279 # 1quqA.105.31 read from T0506.t2k.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)G109 (1quqA)G78 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1quqA 74 :VTIV T0506 110 :RADR 1quqA 79 :IIRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21281 # 1b7yA.105.195 read from T0506.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0506)R110 (1b7yA)R201 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLVG 1b7yA 196 :IVVPG T0506 111 :ADR 1b7yA 202 :VFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21283 # 1v0jA.105.310 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 105 :LTLVGRA 1v0jA 311 :VIMREYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=21284 # 1w9hA.105.180 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1w9hA)G186 because S (epsilon) conformation "forbidden" or filtered. T0506 105 :LTLV 1w9hA 181 :IIIG T0506 111 :ADR 1w9hA 187 :ATR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21286 # 1wj9A.105.173 read from T0506.t2k.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wj9A)E181 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGR 1wj9A 174 :VLFEGR T0506 113 :R 1wj9A 182 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=21288 # 1quqB.105.24 read from T0506.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0506)L105 (1quqB)V25 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRADR 1quqB 26 :CFVGRLEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21289 # 1gy7A.105.81 read from T0506.t2k.many.frag # found chain 1gy7A in training set T0506 105 :LTLVGRADR 1gy7A 82 :VMITGDLLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21290 # 1xdfA.105.96 read from T0506.t2k.many.frag # found chain 1xdfA in template set T0506 105 :LTLVGRADR 1xdfA 97 :ISFETKLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21291 # 1n7zA.105.37 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)R110 (1n7zA)R43 because L (left) conformation "forbidden" or filtered. T0506 105 :LTLVG 1n7zA 38 :FITFG T0506 111 :ADR 1n7zA 44 :SEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21293 # 1qs1A.105.255 read from T0506.t2k.many.frag # found chain 1qs1A in training set T0506 105 :LTLVGRADR 1qs1A 256 :LQIEGTLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21294 # 1vs0A.105.75 read from T0506.t2k.many.frag # found chain 1vs0A in template set T0506 105 :LTLVGRADR 1vs0A 525 :VVLDGEAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21295 # 1wocA.105.70 read from T0506.t2k.many.frag # found chain 1wocA in template set T0506 105 :LTLVGRADR 1wocA 72 :ITVQGFISC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21296 # 1qd6C.105.192 read from T0506.t2k.many.frag # found chain 1qd6C in template set Warning: unaligning (T0506)L105 (1qd6C)G222 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRADR 1qd6C 223 :AELGLSYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=21297 # 1musA.105.279 read from T0506.t2k.many.frag # found chain 1musA in template set Warning: unaligning (T0506)G109 (1musA)A284 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1musA)N288 because L (left) conformation "forbidden" or filtered. T0506 105 :LTLV 1musA 280 :NAVL T0506 110 :RAD 1musA 285 :EEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21299 # 1xdnA.105.106 read from T0506.t2k.many.frag # found chain 1xdnA in training set Warning: unaligning (T0506)G109 (1xdnA)G158 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1xdnA 154 :LVLN T0506 110 :RADR 1xdnA 159 :ELFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21301 # 1sluA.105.38 read from T0506.t2k.many.frag # found chain 1sluA in training set Warning: unaligning (T0506)A111 (1sluA)T45 because N (gamma') conformation "forbidden" or filtered. T0506 105 :LTLVGR 1sluA 39 :ELLIGQ T0506 112 :DR 1sluA 46 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21303 # 1bcpD.105.27 read from T0506.t2k.many.frag # found chain 1bcpD in template set T0506 105 :LTLVGRADR 1bcpD 28 :MLVCGIAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21304 # 1v3eA.105.81 read from T0506.t2k.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)D112 (1v3eA)T230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1v3eA)V231 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1v3eA 223 :VLQIGII Number of specific fragments extracted= 1 number of extra gaps= 1 total=21305 # 1w99A.105.437 read from T0506.t2k.many.frag # found chain 1w99A in template set T0506 105 :LTLVGRADR 1w99A 521 :MEIQCKTSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21306 # 1of5A.105.129 read from T0506.t2k.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)A111 (1of5A)F403 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGR 1of5A 397 :ITLHGF T0506 112 :DR 1of5A 404 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21308 # 2ewrA.105.101 read from T0506.t2k.many.frag # found chain 2ewrA in template set T0506 105 :LTLVGRADR 2ewrA 90 :VEIMGDIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21309 2ftrA expands to /projects/compbio/data/pdb/2ftr.pdb.gz 2ftrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 29, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 31, because occupancy 0.380 <= existing 0.380 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 33, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 171, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 173, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 474, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 478, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 482, because occupancy 0.380 <= existing 0.380 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 484, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 2ftrA Skipped atom 684, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 700, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 708, because occupancy 0.380 <= existing 0.380 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 2ftrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2ftrA.105.8 read from T0506.t2k.many.frag # adding 2ftrA to template set # found chain 2ftrA in template set T0506 105 :LTLVGRADR 2ftrA 8 :VKLIALYEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21310 # 1ty9A.106.118 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R113 (1ty9A)R126 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLVGRAD 1ty9A 119 :ILNGQAV T0506 114 :I 1ty9A 127 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=21312 # 1xhnA.106.114 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 106 :TLVGRADRI 1xhnA 115 :MLSGTVTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21313 # 1vl7A.106.99 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A111 (1vl7A)A93 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLVGR 1vl7A 88 :SFDCT T0506 112 :DRI 1vl7A 94 :TLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21315 # 1se8A.106.199 read from T0506.t2k.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)G109 (1se8A)G203 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLV 1se8A 200 :MIM T0506 110 :RADRI 1se8A 204 :RLVNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21317 # 1vpmA.106.86 read from T0506.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)R113 (1vpmA)H82 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRAD 1vpmA 75 :ELEGFVT T0506 114 :I 1vpmA 83 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=21319 # 2asfA.106.82 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 106 :TLVGRADRI 2asfA 83 :SLEGRAAVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21320 # 1flmA.106.83 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 106 :TLVGRADRI 1flmA 84 :LIRGSAAFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21321 # 1xdfA.106.97 read from T0506.t2k.many.frag # found chain 1xdfA in template set T0506 106 :TLVGRADRI 1xdfA 98 :SFETKLVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21322 # 1quqB.106.25 read from T0506.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0506)A111 (1quqB)L31 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLVGR 1quqB 26 :CFVGR T0506 112 :DRI 1quqB 32 :EKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21324 # 1b7yA.106.196 read from T0506.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0506)G109 (1b7yA)G200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1b7yA)F203 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1b7yA 197 :VVP T0506 110 :RA 1b7yA 201 :RV T0506 113 :RI 1b7yA 204 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=21327 # 1quqA.106.32 read from T0506.t2k.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)A111 (1quqA)I80 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLVGR 1quqA 75 :TIVGI T0506 112 :DRI 1quqA 81 :RHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21329 # 1wj9A.106.174 read from T0506.t2k.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wj9A)E181 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1wj9A 175 :LFE T0506 110 :RA 1wj9A 179 :RL T0506 113 :RI 1wj9A 182 :VV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21332 # 1a62.106.95 read from T0506.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0506)R113 (1a62)P103 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLVGRAD 1a62 96 :TISGKIR T0506 114 :I 1a62 104 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=21334 # 1w9hA.106.181 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1w9hA)T188 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1w9hA 182 :IIG T0506 110 :RA 1w9hA 186 :GA T0506 113 :RI 1w9hA 189 :RI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21337 # 1vs0A.106.76 read from T0506.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0506)G109 (1vs0A)G529 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1vs0A)V532 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1vs0A 526 :VLD T0506 110 :RA 1vs0A 530 :EA T0506 113 :RI 1vs0A 533 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=21340 # 1v0jA.106.311 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 106 :TLVGRA 1v0jA 312 :IMREYS T0506 114 :I 1v0jA 320 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=21342 # 1qs1A.106.256 read from T0506.t2k.many.frag # found chain 1qs1A in training set Warning: unaligning (T0506)D112 (1qs1A)K263 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLVGRA 1qs1A 257 :QIEGTL T0506 113 :RI 1qs1A 264 :KS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21344 1tt7A expands to /projects/compbio/data/pdb/1tt7.pdb.gz 1tt7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tt7A.106.67 read from T0506.t2k.many.frag # adding 1tt7A to template set # found chain 1tt7A in template set T0506 106 :TLVGRADRI 1tt7A 68 :DAAGTVVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21345 # 1nqeA.106.166 read from T0506.t2k.many.frag # found chain 1nqeA in template set Warning: unaligning (T0506)G109 (1nqeA)G170 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1nqeA 167 :TLL T0506 110 :RADRI 1nqeA 171 :DYAHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21347 # 1qd6C.106.193 read from T0506.t2k.many.frag # found chain 1qd6C in template set Warning: unaligning (T0506)A111 (1qd6C)S228 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLVGR 1qd6C 223 :AELGL T0506 112 :DRI 1qd6C 229 :YPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21349 # 2ewrA.106.102 read from T0506.t2k.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)R110 (2ewrA)D95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (2ewrA)R97 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLVG 2ewrA 91 :EIMG T0506 111 :A 2ewrA 96 :I T0506 113 :RI 2ewrA 98 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=21352 1bjt expands to /projects/compbio/data/pdb/1bjt.pdb.gz 1bjt:Warning: there is no chain 1bjt will retry with 1bjtA # 1bjt.106.476 read from T0506.t2k.many.frag # adding 1bjt to template set # found chain 1bjt in template set T0506 106 :TLVGRADRI 1bjt 885 :RMYGRIEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21353 # 1n7zA.106.38 read from T0506.t2k.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)G109 (1n7zA)G42 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1n7zA)R43 because L (left) conformation "forbidden" or filtered. T0506 106 :TLV 1n7zA 39 :ITF T0506 111 :ADRI 1n7zA 44 :SEPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=21355 # 1gy7A.106.82 read from T0506.t2k.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)I114 (1gy7A)D91 because S (epsilon) conformation "forbidden" or filtered. T0506 106 :TLVGRADR 1gy7A 83 :MITGDLLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21356 # 1wocA.106.71 read from T0506.t2k.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)G109 (1wocA)G76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wocA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLV 1wocA 73 :TVQ T0506 110 :RA 1wocA 77 :FI T0506 113 :RI 1wocA 80 :CH Number of specific fragments extracted= 3 number of extra gaps= 2 total=21359 # 1musA.106.280 read from T0506.t2k.many.frag # found chain 1musA in template set T0506 106 :TLVGRADRI 1musA 281 :AVLAEEINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21360 1ysjA expands to /projects/compbio/data/pdb/1ysj.pdb.gz 1ysjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1676, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1678, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1680, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1682, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1684, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1686, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1688, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1690, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1692, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1900, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1904, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1906, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1910, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1912, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1914, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2167, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2169, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2171, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2175, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2181, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2183, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ysjA.106.271 read from T0506.t2k.many.frag # adding 1ysjA to template set # found chain 1ysjA in template set Warning: unaligning (T0506)G109 (1ysjA)G251 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLV 1ysjA 248 :EME T0506 110 :RADRI 1ysjA 252 :TVRTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21362 # 1w99A.106.438 read from T0506.t2k.many.frag # found chain 1w99A in template set Warning: unaligning (T0506)D112 (1w99A)S528 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 (1w99A)F530 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRA 1w99A 522 :EIQCKT T0506 113 :R 1w99A 529 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=21364 1jyoA expands to /projects/compbio/data/pdb/1jyo.pdb.gz 1jyoA:# 1jyoA.106.46 read from T0506.t2k.many.frag # adding 1jyoA to template set # found chain 1jyoA in template set T0506 106 :TLVGRADRI 1jyoA 47 :LLNGMIIPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21365 # 1lo7A.106.78 read from T0506.t2k.many.frag # found chain 1lo7A in training set Warning: unaligning (T0506)G109 (1lo7A)T82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1lo7A)C83 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLV 1lo7A 79 :TIE T0506 111 :ADRI 1lo7A 84 :IKEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=21367 # 1xhnA.107.115 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 107 :LVGRADRIG 1xhnA 116 :LSGTVTKVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21368 # 1ty9A.107.119 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)G109 (1ty9A)G122 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LV 1ty9A 120 :LN T0506 110 :RADRIG 1ty9A 123 :QAVRLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21370 # 1vl7A.107.100 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 107 :LVGRADRIG 1vl7A 89 :FDCTATLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21371 # 1flmA.107.84 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 107 :LVGRADRIG 1flmA 85 :IRGSAAFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21372 # 1a62.107.96 read from T0506.t2k.many.frag # found chain 1a62 in training set T0506 107 :LVGRADRIG 1a62 97 :ISGKIRPPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21373 # 1xdfA.107.98 read from T0506.t2k.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)G109 (1xdfA)T101 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :LV 1xdfA 99 :FE T0506 110 :RADRIG 1xdfA 102 :KLVEGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21375 # 1vpmA.107.87 read from T0506.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)R113 (1vpmA)H82 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LVGRAD 1vpmA 76 :LEGFVT T0506 114 :IG 1vpmA 83 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21377 # 2asfA.107.83 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)D112 (2asfA)A89 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2asfA)S92 because G (3-10) conformation "forbidden" or filtered. T0506 107 :LVGRA 2asfA 84 :LEGRA T0506 113 :RI 2asfA 90 :VN Number of specific fragments extracted= 2 number of extra gaps= 2 total=21379 # 1quqB.107.26 read from T0506.t2k.many.frag # found chain 1quqB in template set Warning: unaligning (T0506)A111 (1quqB)L31 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVGR 1quqB 27 :FVGR T0506 112 :DRIG 1quqB 32 :EKIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=21381 # 1tt7A.107.68 read from T0506.t2k.many.frag # found chain 1tt7A in template set T0506 107 :LVGRADRIG 1tt7A 69 :AAGTVVSSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21382 # 1w9hA.107.182 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1w9hA)G186 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1w9hA)A187 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LV 1w9hA 183 :IG T0506 112 :DRIG 1w9hA 188 :TRID Number of specific fragments extracted= 2 number of extra gaps= 1 total=21384 # 1qd6C.107.194 read from T0506.t2k.many.frag # found chain 1qd6C in template set Warning: unaligning (T0506)G115 (1qd6C)T232 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LVGRADRI 1qd6C 224 :ELGLSYPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21385 # 1b7yA.107.197 read from T0506.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0506)D112 (1b7yA)F203 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :LVGRA 1b7yA 198 :VPGRV T0506 113 :RIG 1b7yA 204 :RFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21387 # 1jyoA.107.47 read from T0506.t2k.many.frag # found chain 1jyoA in template set Warning: unaligning (T0506)R110 (1jyoA)M51 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVG 1jyoA 48 :LNG T0506 111 :ADRIG 1jyoA 52 :IIPLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21389 # 1vs0A.107.77 read from T0506.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0506)D112 (1vs0A)V532 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1vs0A)D535 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVGRA 1vs0A 527 :LDGEA T0506 113 :RI 1vs0A 533 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=21391 # 1v0jA.107.312 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 107 :LVGRA 1v0jA 313 :MREYS T0506 114 :IG 1v0jA 320 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21393 # 1wj9A.107.175 read from T0506.t2k.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wj9A)E181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wj9A)D184 because D (zeta) conformation "forbidden" or filtered. T0506 107 :LV 1wj9A 176 :FE T0506 110 :R 1wj9A 179 :R T0506 113 :RI 1wj9A 182 :VV Number of specific fragments extracted= 3 number of extra gaps= 3 total=21396 # 1ysjA.107.272 read from T0506.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0506)V108 (1ysjA)E250 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1ysjA)G251 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1ysjA)R254 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :L 1ysjA 249 :M T0506 110 :RA 1ysjA 252 :TV T0506 113 :RIG 1ysjA 255 :TFQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=21399 1th7A expands to /projects/compbio/data/pdb/1th7.pdb.gz 1th7A:# 1th7A.107.31 read from T0506.t2k.many.frag # adding 1th7A to template set # found chain 1th7A in template set T0506 107 :LVGRADRIG 1th7A 32 :VRGMLRSYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21400 # 1se8A.107.200 read from T0506.t2k.many.frag # found chain 1se8A in training set T0506 107 :LVGRADRIG 1se8A 201 :IMGRLVNEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21401 1s28A expands to /projects/compbio/data/pdb/1s28.pdb.gz 1s28A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1s28A.107.53 read from T0506.t2k.many.frag # adding 1s28A to template set # found chain 1s28A in template set Warning: unaligning (T0506)G109 (1s28A)S56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1s28A)D62 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 1s28A 54 :FL T0506 110 :RADRI 1s28A 57 :DIGVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21403 # 1qs1A.107.257 read from T0506.t2k.many.frag # found chain 1qs1A in training set T0506 107 :LVGRADRIG 1qs1A 258 :IEGTLKKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21404 1k3sA expands to /projects/compbio/data/pdb/1k3s.pdb.gz 1k3sA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1k3sA.107.41 read from T0506.t2k.many.frag # adding 1k3sA to template set # found chain 1k3sA in template set Warning: unaligning (T0506)R110 (1k3sA)P45 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVG 1k3sA 42 :MCC T0506 111 :ADRIG 1k3sA 46 :FMPLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=21406 # 2ewrA.107.103 read from T0506.t2k.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)G109 (2ewrA)G94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2ewrA)L100 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 2ewrA 92 :IM T0506 110 :RADRI 2ewrA 95 :DIRKR Number of specific fragments extracted= 2 number of extra gaps= 2 total=21408 # 1quqA.107.33 read from T0506.t2k.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)G115 (1quqA)E84 because D (zeta) conformation "forbidden" or filtered. T0506 107 :LVGRADRI 1quqA 76 :IVGIIRHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21409 # 1vr7A.107.19 read from T0506.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0506)A111 (1vr7A)F12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1vr7A)Y13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vr7A)E14 because L (left) conformation "forbidden" or filtered. T0506 107 :LVGR 1vr7A 8 :LVAE T0506 114 :IG 1vr7A 15 :CD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21411 # 1bjt.107.477 read from T0506.t2k.many.frag # found chain 1bjt in template set Warning: unaligning (T0506)G115 (1bjt)G894 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LVGRADRI 1bjt 886 :MYGRIEQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=21412 # 1lo7A.107.79 read from T0506.t2k.many.frag # found chain 1lo7A in training set Warning: unaligning (T0506)R110 (1lo7A)C83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1lo7A)R88 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LVG 1lo7A 80 :IET T0506 111 :ADRI 1lo7A 84 :IKEW Number of specific fragments extracted= 2 number of extra gaps= 2 total=21414 1fcdA expands to /projects/compbio/data/pdb/1fcd.pdb.gz 1fcdA:# 1fcdA.107.348 read from T0506.t2k.many.frag # adding 1fcdA to template set # found chain 1fcdA in template set Warning: unaligning (T0506)G109 (1fcdA)A351 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LV 1fcdA 349 :VA T0506 110 :RADRIG 1fcdA 352 :IYRPNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21416 # 2ftrA.107.10 read from T0506.t2k.many.frag # found chain 2ftrA in template set T0506 107 :LVGRADRIG 2ftrA 10 :LIALYEQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21417 # 1xhnA.108.116 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D112 (1xhnA)T121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1xhnA)K122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRA 1xhnA 117 :SGTV T0506 114 :I 1xhnA 123 :V T0506 116 :P 1xhnA 125 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=21420 # 1ty9A.108.120 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A111 (1ty9A)A124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1ty9A)P128 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGR 1ty9A 121 :NGQ T0506 112 :DRI 1ty9A 125 :VRL T0506 116 :P 1ty9A 129 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=21423 # 1vl7A.108.101 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D112 (1vl7A)T94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1vl7A)E97 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRA 1vl7A 90 :DCTA T0506 113 :RI 1vl7A 95 :LI T0506 116 :P 1vl7A 98 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=21426 # 1jyoA.108.48 read from T0506.t2k.many.frag # found chain 1jyoA in template set Warning: unaligning (T0506)G115 (1jyoA)S56 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRADRI 1jyoA 49 :NGMIIPL T0506 116 :P 1jyoA 57 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=21428 # 1a62.108.97 read from T0506.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0506)G115 (1a62)K105 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRADRI 1a62 98 :SGKIRPP T0506 116 :P 1a62 106 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21430 # 1th7A.108.32 read from T0506.t2k.many.frag # found chain 1th7A in template set Warning: unaligning (T0506)G109 (1th7A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1th7A)S38 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :V 1th7A 33 :R T0506 110 :RAD 1th7A 35 :MLR T0506 114 :IGP 1th7A 39 :YDQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=21433 # 1tt7A.108.69 read from T0506.t2k.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)A111 (1tt7A)V73 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGR 1tt7A 70 :AGT T0506 112 :DRIGP 1tt7A 74 :VSSND Number of specific fragments extracted= 2 number of extra gaps= 1 total=21435 # 1v0jA.108.313 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)A111 (1v0jA)S317 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 108 :VGR 1v0jA 314 :REY T0506 114 :IGP 1v0jA 320 :AED Number of specific fragments extracted= 2 number of extra gaps= 1 total=21437 # 1vr7A.108.20 read from T0506.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0506)D112 (1vr7A)Y13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1vr7A)D16 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRA 1vr7A 9 :VAEF T0506 113 :RI 1vr7A 14 :EC T0506 116 :P 1vr7A 17 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=21440 # 1w9hA.108.183 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)A111 (1w9hA)A187 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :VGR 1w9hA 184 :GTG T0506 112 :DRIGP 1w9hA 188 :TRIDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21442 # 1ysjA.108.273 read from T0506.t2k.many.frag # found chain 1ysjA in template set Warning: unaligning (T0506)D112 (1ysjA)R254 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1ysjA)Q257 because E (beta_S) conformation "forbidden" or filtered. T0506 108 :VGRA 1ysjA 250 :EGTV T0506 113 :RI 1ysjA 255 :TF T0506 116 :P 1ysjA 258 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=21445 # 1qd6C.108.195 read from T0506.t2k.many.frag # found chain 1qd6C in template set Warning: unaligning (T0506)G115 (1qd6C)T232 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :VGRADRI 1qd6C 225 :LGLSYPI T0506 116 :P 1qd6C 233 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=21447 # 1xdfA.108.99 read from T0506.t2k.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)G109 (1xdfA)T101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1xdfA)V104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1xdfA)N108 because G (3-10) conformation "forbidden" or filtered. T0506 108 :V 1xdfA 100 :E T0506 110 :RA 1xdfA 102 :KL T0506 113 :RIG 1xdfA 105 :EGA Number of specific fragments extracted= 3 number of extra gaps= 3 total=21450 # 1flmA.108.85 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)D112 (1flmA)A90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1flmA)T93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1flmA)D94 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :VGRA 1flmA 86 :RGSA T0506 113 :RI 1flmA 91 :FR Number of specific fragments extracted= 2 number of extra gaps= 2 total=21452 1um0A expands to /projects/compbio/data/pdb/1um0.pdb.gz 1um0A:# 1um0A.108.21 read from T0506.t2k.many.frag # adding 1um0A to template set # found chain 1um0A in template set Warning: unaligning (T0506)R113 (1um0A)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 108 :VGRAD 1um0A 22 :GGVLD T0506 114 :IGP 1um0A 28 :MPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21454 # 1quqB.108.27 read from T0506.t2k.many.frag # found chain 1quqB in template set T0506 108 :VGRADRIGP 1quqB 28 :VGRLEKIHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21455 # 1s28A.108.54 read from T0506.t2k.many.frag # found chain 1s28A in template set Warning: unaligning (T0506)G115 (1s28A)D62 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRADRI 1s28A 55 :LSDIGVI T0506 116 :P 1s28A 63 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=21457 1fuiA expands to /projects/compbio/data/pdb/1fui.pdb.gz 1fuiA:# 1fuiA.108.476 read from T0506.t2k.many.frag # adding 1fuiA to template set # found chain 1fuiA in template set Warning: unaligning (T0506)G109 (1fuiA)G478 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :V 1fuiA 477 :E T0506 110 :RADRIGP 1fuiA 479 :WSVELPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21459 # 1vpmA.108.88 read from T0506.t2k.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)G109 (1vpmA)G78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vpmA)H82 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :V 1vpmA 77 :E T0506 111 :AD 1vpmA 80 :VT T0506 114 :IGP 1vpmA 83 :TGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=21462 2f1rA expands to /projects/compbio/data/pdb/2f1r.pdb.gz 2f1rA:# 2f1rA.108.70 read from T0506.t2k.many.frag # adding 2f1rA to template set # found chain 2f1rA in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2f1rA)S78 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2f1rA)S78 T0506 108 :VGRADR 2f1rA 71 :LAFIRR T0506 116 :P 2f1rA 79 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=21464 # 1k3sA.108.42 read from T0506.t2k.many.frag # found chain 1k3sA in template set Warning: unaligning (T0506)G109 (1k3sA)C44 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1k3sA)M47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1k3sA)P50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1k3sA)D51 because G (3-10) conformation "forbidden" or filtered. T0506 108 :V 1k3sA 43 :C T0506 110 :RA 1k3sA 45 :PF T0506 113 :RI 1k3sA 48 :PL Number of specific fragments extracted= 3 number of extra gaps= 3 total=21467 # 1vs0A.108.78 read from T0506.t2k.many.frag # found chain 1vs0A in template set Warning: unaligning (T0506)D112 (1vs0A)V532 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1vs0A)S536 because G (3-10) conformation "forbidden" or filtered. T0506 108 :VGRA 1vs0A 528 :DGEA T0506 113 :RIG 1vs0A 533 :VLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21469 # 1vjhA.108.85 read from T0506.t2k.many.frag # found chain 1vjhA in template set Warning: unaligning (T0506)G109 (1vjhA)F87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 because of BadResidue code BAD_PEPTIDE in next template residue (1vjhA)E90 Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE at template residue (1vjhA)E90 Warning: unaligning (T0506)G115 (1vjhA)H93 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :V 1vjhA 86 :T T0506 110 :R 1vjhA 88 :H T0506 113 :RI 1vjhA 91 :KV T0506 116 :P 1vjhA 94 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=21473 # 1wj9A.108.176 read from T0506.t2k.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wj9A)D184 because D (zeta) conformation "forbidden" or filtered. T0506 108 :V 1wj9A 177 :E T0506 110 :R 1wj9A 179 :R T0506 112 :DRI 1wj9A 181 :EVV T0506 116 :P 1wj9A 185 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=21477 # 2ftrA.108.11 read from T0506.t2k.many.frag # found chain 2ftrA in template set Warning: unaligning (T0506)P116 (2ftrA)D19 because D (zeta) conformation "forbidden" or filtered. T0506 108 :VGRADRIG 2ftrA 11 :IALYEQPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21478 2biqA expands to /projects/compbio/data/pdb/2biq.pdb.gz 2biqA:Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 776, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 778, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 782, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 784, because occupancy 0.500 <= existing 0.500 in 2biqA Skipped atom 786, because occupancy 0.500 <= existing 0.500 in 2biqA # 2biqA.108.123 read from T0506.t2k.many.frag # adding 2biqA to template set # found chain 2biqA in template set T0506 108 :VGRADRIGP 2biqA 217 :VVPYEPPEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21479 # 2ewrA.108.104 read from T0506.t2k.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)R110 (2ewrA)D95 because L (left) conformation "forbidden" or filtered. T0506 108 :VG 2ewrA 93 :MG T0506 111 :ADRIGP 2ewrA 96 :IRKRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21481 # 1fcdA.108.349 read from T0506.t2k.many.frag # found chain 1fcdA in template set Warning: unaligning (T0506)P116 (1fcdA)D358 because E (beta_S) conformation "forbidden" or filtered. T0506 108 :VGRADRIG 1fcdA 350 :AAIYRPNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=21482 # 1b7yA.108.198 read from T0506.t2k.many.frag # found chain 1b7yA in template set Warning: unaligning (T0506)G109 (1b7yA)G200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1b7yA)R201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1b7yA)E206 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :V 1b7yA 199 :P T0506 111 :ADRI 1b7yA 202 :VFRF T0506 116 :P 1b7yA 207 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=21485 # 2asfA.108.84 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)D112 (2asfA)A89 because E (beta_S) conformation "forbidden" or filtered. T0506 108 :VGRA 2asfA 85 :EGRA T0506 113 :RIGP 2asfA 90 :VNSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21487 # 1xhnA.109.117 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D112 (1xhnA)T121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :GRA 1xhnA 118 :GTV T0506 113 :RI 1xhnA 122 :KV T0506 116 :PD 1xhnA 125 :ET Number of specific fragments extracted= 3 number of extra gaps= 2 total=21490 # 1ty9A.109.121 read from T0506.t2k.many.frag # found chain 1ty9A in training set T0506 109 :GRADRIGPD 1ty9A 122 :GQAVRLPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21491 # 1v0jA.109.314 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 109 :GRA 1v0jA 315 :EYS T0506 114 :IGPD 1v0jA 320 :AEDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21493 1yreA expands to /projects/compbio/data/pdb/1yre.pdb.gz 1yreA:# 1yreA.109.21 read from T0506.t2k.many.frag # adding 1yreA to template set # found chain 1yreA in template set Warning: unaligning (T0506)A111 (1yreA)L22 because D (zeta) conformation "forbidden" or filtered. T0506 109 :GR 1yreA 20 :LR T0506 112 :DRIGPD 1yreA 23 :EPLVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21495 # 1vl7A.109.102 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D117 (1vl7A)E99 because L (left) conformation "forbidden" or filtered. T0506 109 :GRADRIGP 1vl7A 91 :CTATLIER Number of specific fragments extracted= 1 number of extra gaps= 1 total=21496 # 1vr7A.109.21 read from T0506.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0506)D112 (1vr7A)Y13 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1vr7A)D16 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :GRA 1vr7A 10 :AEF T0506 113 :RI 1vr7A 14 :EC T0506 116 :PD 1vr7A 17 :RE Number of specific fragments extracted= 3 number of extra gaps= 2 total=21499 # 1a62.109.98 read from T0506.t2k.many.frag # found chain 1a62 in training set Warning: unaligning (T0506)G109 (1a62)G99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1a62)K105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1a62)G107 because T (delta_L) conformation "forbidden" or filtered. T0506 110 :RADRI 1a62 100 :KIRPP T0506 116 :P 1a62 106 :E Number of specific fragments extracted= 2 number of extra gaps= 3 total=21501 # 1jyoA.109.49 read from T0506.t2k.many.frag # found chain 1jyoA in template set T0506 109 :GRADRIGPD 1jyoA 50 :GMIIPLSPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21502 # 1th7A.109.33 read from T0506.t2k.many.frag # found chain 1th7A in template set Warning: unaligning (T0506)R110 (1th7A)M35 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1th7A)S38 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :G 1th7A 34 :G T0506 111 :AD 1th7A 36 :LR T0506 114 :IGPD 1th7A 39 :YDQH Number of specific fragments extracted= 3 number of extra gaps= 2 total=21505 # 2f1rA.109.71 read from T0506.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0506)G109 (2f1rA)A72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2f1rA)S78 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2f1rA)S78 T0506 110 :RADR 2f1rA 73 :FIRR T0506 116 :PD 2f1rA 79 :EE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21507 1mqkH expands to /projects/compbio/data/pdb/1mqk.pdb.gz 1mqkH:Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 872, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 874, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 876, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 892, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 894, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 896, because occupancy 0.000 <= existing 0.000 in 1mqkH Skipped atom 911, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 913, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 917, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 1028, because occupancy 0.300 <= existing 0.700 in 1mqkH Skipped atom 1149, because occupancy 0.280 <= existing 0.730 in 1mqkH Skipped atom 1151, because occupancy 0.280 <= existing 0.730 in 1mqkH Skipped atom 1286, because occupancy 0.280 <= existing 0.720 in 1mqkH Skipped atom 1288, because occupancy 0.280 <= existing 0.720 in 1mqkH Skipped atom 1290, because occupancy 0.280 <= existing 0.720 in 1mqkH Skipped atom 1537, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 1567, because occupancy 0.500 <= existing 0.500 in 1mqkH Skipped atom 1603, because occupancy 0.340 <= existing 0.660 in 1mqkH Skipped atom 1605, because occupancy 0.340 <= existing 0.660 in 1mqkH Skipped atom 1607, because occupancy 0.340 <= existing 0.660 in 1mqkH Skipped atom 1638, because occupancy 0.420 <= existing 0.580 in 1mqkH Skipped atom 1723, because occupancy 0.460 <= existing 0.550 in 1mqkH Skipped atom 1725, because occupancy 0.460 <= existing 0.550 in 1mqkH Skipped atom 1727, because occupancy 0.460 <= existing 0.550 in 1mqkH Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 1mqkH # 1mqkH.109.80 read from T0506.t2k.many.frag # adding 1mqkH to template set # found chain 1mqkH in template set T0506 109 :GRADRIGPD 1mqkH 81 :LQMSSLKSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21508 # 1um0A.109.22 read from T0506.t2k.many.frag # found chain 1um0A in template set Warning: unaligning (T0506)R113 (1um0A)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 109 :GRAD 1um0A 23 :GVLD T0506 114 :IGPD 1um0A 28 :MPSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21510 # 1w9hA.109.184 read from T0506.t2k.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)G109 (1w9hA)T185 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1w9hA)G186 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1w9hA)A187 because Y (epsilon') conformation "forbidden" or filtered. T0506 112 :DRIGPD 1w9hA 188 :TRIDNV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21511 1efyA expands to /projects/compbio/data/pdb/1efy.pdb.gz 1efyA:# 1efyA.109.137 read from T0506.t2k.many.frag # adding 1efyA to template set # found chain 1efyA in template set Warning: unaligning (T0506)G109 (1efyA)T799 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1efyA)D805 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 1efyA 800 :DIKVV T0506 116 :PD 1efyA 806 :KD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21513 2f9hA expands to /projects/compbio/data/pdb/2f9h.pdb.gz 2f9hA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f9hA.109.67 read from T0506.t2k.many.frag # adding 2f9hA to template set # found chain 2f9hA in template set Warning: unaligning (T0506)G109 (2f9hA)Y65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (2f9hA)K69 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2f9hA)G71 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RAD 2f9hA 66 :TIT T0506 114 :I 2f9hA 70 :V T0506 116 :PD 2f9hA 72 :SF Number of specific fragments extracted= 3 number of extra gaps= 3 total=21516 1wlfA expands to /projects/compbio/data/pdb/1wlf.pdb.gz 1wlfA:# 1wlfA.109.103 read from T0506.t2k.many.frag # adding 1wlfA to template set # found chain 1wlfA in template set Warning: unaligning (T0506)A111 (1wlfA)V108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wlfA)S112 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :GR 1wlfA 106 :VE T0506 112 :DRI 1wlfA 109 :EPL T0506 116 :PD 1wlfA 113 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=21519 # 1nlfA.109.209 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R113 (1nlfA)S214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1nlfA)T216 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :GRAD 1nlfA 210 :SYLS T0506 114 :I 1nlfA 215 :M T0506 116 :PD 1nlfA 217 :SA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21522 # 1m2dA.109.71 read from T0506.t2k.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)G109 (1m2dA)V72 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRIGPD 1m2dA 73 :WYGQVKPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21523 # 1uzbA.109.65 read from T0506.t2k.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)G109 (1uzbA)G66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1uzbA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RADRI 1uzbA 67 :TTAKA T0506 116 :PD 1uzbA 73 :KA Number of specific fragments extracted= 2 number of extra gaps= 2 total=21525 # 1fuiA.109.477 read from T0506.t2k.many.frag # found chain 1fuiA in template set Warning: unaligning (T0506)G115 (1fuiA)P484 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :GRADRI 1fuiA 478 :GWSVEL T0506 116 :PD 1fuiA 485 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21527 # 1vjhA.109.86 read from T0506.t2k.many.frag # found chain 1vjhA in template set Warning: unaligning (T0506)G109 (1vjhA)F87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 because of BadResidue code BAD_PEPTIDE in next template residue (1vjhA)E90 Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE at template residue (1vjhA)E90 T0506 110 :R 1vjhA 88 :H T0506 113 :RIGPD 1vjhA 91 :KVHKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21529 # 1wd3A.109.353 read from T0506.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)G109 (1wd3A)V371 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1wd3A)N372 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wd3A)T373 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wd3A)D377 because Y (epsilon') conformation "forbidden" or filtered. T0506 112 :DRI 1wd3A 374 :QVV T0506 116 :PD 1wd3A 378 :DD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21531 # 1pmhX.109.140 read from T0506.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0506)G109 (1pmhX)H141 because E (beta_S) conformation "forbidden" or filtered. T0506 110 :RADRIGPD 1pmhX 142 :KAFAIPED Number of specific fragments extracted= 1 number of extra gaps= 1 total=21532 # 1vziA.109.87 read from T0506.t2k.many.frag # found chain 1vziA in training set Warning: unaligning (T0506)G109 (1vziA)C87 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vziA)F91 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RAD 1vziA 88 :YTQ T0506 114 :IGPD 1vziA 92 :LKPG Number of specific fragments extracted= 2 number of extra gaps= 2 total=21534 # 1gcqC.109.34 read from T0506.t2k.many.frag # found chain 1gcqC in training set T0506 109 :GRADRIGPD 1gcqC 625 :VELTKAEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21535 # 1m1fA.109.87 read from T0506.t2k.many.frag # found chain 1m1fA in training set Warning: unaligning (T0506)R110 (1m1fA)R89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1m1fA)E91 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :G 1m1fA 88 :K T0506 111 :A 1m1fA 90 :L T0506 113 :RIGPD 1m1fA 92 :RVPET Number of specific fragments extracted= 3 number of extra gaps= 2 total=21538 # 1whi.109.40 read from T0506.t2k.many.frag # found chain 1whi in training set Warning: unaligning (T0506)I114 (1whi)A46 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :GRADR 1whi 41 :ATVKD T0506 115 :GPD 1whi 47 :TPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21540 # 1s28A.109.55 read from T0506.t2k.many.frag # found chain 1s28A in template set Warning: unaligning (T0506)G109 (1s28A)S56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1s28A)V60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1s28A)L64 because T (delta_L) conformation "forbidden" or filtered. T0506 110 :RAD 1s28A 57 :DIG T0506 114 :IGP 1s28A 61 :IDN Number of specific fragments extracted= 2 number of extra gaps= 3 total=21542 # 1k2xA.109.8 read from T0506.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0506)R110 (1k2xA)G11 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1k2xA)G13 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :G 1k2xA 10 :G T0506 111 :A 1k2xA 12 :A T0506 113 :RIGPD 1k2xA 14 :AISRA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21545 # 1gheA.109.3 read from T0506.t2k.many.frag # found chain 1gheA in training set Warning: unaligning (T0506)G109 because first residue in template chain is (1gheA)A4 T0506 110 :RADRIGPD 1gheA 5 :QLRRVTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21546 # 1xhnA.110.118 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D112 (1xhnA)T121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RA 1xhnA 119 :TV T0506 113 :RI 1xhnA 122 :KV T0506 116 :PDE 1xhnA 125 :ETE Number of specific fragments extracted= 3 number of extra gaps= 2 total=21549 # 1v0jA.110.315 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 Warning: unaligning (T0506)G115 (1v0jA)E321 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E118 (1v0jA)D324 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RA 1v0jA 316 :YS T0506 114 :I 1v0jA 320 :A T0506 116 :PD 1v0jA 322 :DD Number of specific fragments extracted= 3 number of extra gaps= 3 total=21552 # 1yreA.110.22 read from T0506.t2k.many.frag # found chain 1yreA in template set Warning: unaligning (T0506)A111 (1yreA)L22 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1yreA)P24 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :R 1yreA 21 :R T0506 112 :D 1yreA 23 :E T0506 114 :IGPDE 1yreA 25 :LVEAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=21555 # 2f1rA.110.72 read from T0506.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0506)R113 (2f1rA)R76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2f1rA)S78 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2f1rA)S78 T0506 110 :RAD 2f1rA 73 :FIR T0506 116 :PDE 2f1rA 79 :EEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21557 # 1wd3A.110.354 read from T0506.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)A111 (1wd3A)T373 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wd3A)Q374 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E118 (1wd3A)S380 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :R 1wd3A 372 :N T0506 113 :RIGPD 1wd3A 375 :VVDDD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21559 # 1wlfA.110.104 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)G115 (1wlfA)S112 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RADRI 1wlfA 107 :EVEPL T0506 116 :PDE 1wlfA 113 :ADD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21561 # 1ty9A.110.122 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)G115 (1ty9A)P128 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 1ty9A 123 :QAVRL T0506 116 :PDE 1ty9A 129 :NAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21563 # 1i12A.110.8 read from T0506.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)R110 (1i12A)Y8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1i12A)R10 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1i12A 9 :I T0506 113 :RIGPDE 1i12A 11 :RMEEGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21565 1m3yA expands to /projects/compbio/data/pdb/1m3y.pdb.gz 1m3yA:# 1m3yA.110.182 read from T0506.t2k.many.frag # adding 1m3yA to template set # found chain 1m3yA in template set T0506 110 :RADRIGPDE 1m3yA 207 :DYIFLDTQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21566 # 1m1fA.110.88 read from T0506.t2k.many.frag # found chain 1m1fA in training set Warning: unaligning (T0506)D112 (1m1fA)E91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1m1fA)P94 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RA 1m1fA 89 :RL T0506 113 :RI 1m1fA 92 :RV T0506 116 :PDE 1m1fA 95 :ETI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21569 # 1uzbA.110.66 read from T0506.t2k.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)G115 (1uzbA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RADRI 1uzbA 67 :TTAKA T0506 116 :PDE 1uzbA 73 :KAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21571 # 1efyA.110.138 read from T0506.t2k.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)E118 (1efyA)S808 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRIGPD 1efyA 800 :DIKVVDKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=21572 # 1nlfA.110.210 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R110 (1nlfA)Y211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1nlfA)T216 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :ADRI 1nlfA 212 :LSSM T0506 116 :PDE 1nlfA 217 :SAE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21574 # 2f9hA.110.68 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)R113 (2f9hA)K69 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RAD 2f9hA 66 :TIT T0506 114 :IGPDE 2f9hA 70 :VGSFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21576 # 1pmhX.110.141 read from T0506.t2k.many.frag # found chain 1pmhX in training set Warning: unaligning (T0506)D112 (1pmhX)F144 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1pmhX)P147 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RA 1pmhX 142 :KA T0506 113 :RI 1pmhX 145 :AI T0506 116 :PDE 1pmhX 148 :EDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=21579 # 1f32A.110.25 read from T0506.t2k.many.frag # found chain 1f32A in training set Warning: unaligning (T0506)G115 (1f32A)E31 because E (beta_S) conformation "forbidden" or filtered. T0506 110 :RADRI 1f32A 26 :PWTML T0506 116 :PDE 1f32A 32 :GDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21581 # 1k2xA.110.9 read from T0506.t2k.many.frag # found chain 1k2xA in training set T0506 110 :RADRIGPDE 1k2xA 11 :GAGAISRAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21582 # 1gheA.110.4 read from T0506.t2k.many.frag # found chain 1gheA in training set T0506 110 :RADRIGPDE 1gheA 5 :QLRRVTAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=21583 1x8dA expands to /projects/compbio/data/pdb/1x8d.pdb.gz 1x8dA:# 1x8dA.110.5 read from T0506.t2k.many.frag # adding 1x8dA to template set # found chain 1x8dA in template set Warning: unaligning (T0506)G115 (1x8dA)N11 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 1x8dA 6 :FVMQV T0506 116 :PDE 1x8dA 12 :PDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21585 # 1yx1A.110.201 read from T0506.t2k.many.frag # found chain 1yx1A in template set T0506 110 :RADRIGPDE 1yx1A 200 :VAVPPSAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21586 # 1tfzA.110.183 read from T0506.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0506)R110 (1tfzA)G184 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1tfzA)F185 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1tfzA)E186 because E (beta_S) conformation "forbidden" or filtered. T0506 113 :RIGPDE 1tfzA 187 :RVEDAS Number of specific fragments extracted= 1 number of extra gaps= 1 total=21587 # 2fa1A.110.105 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)R110 (2fa1A)S187 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (2fa1A)R189 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 2fa1A 188 :A T0506 113 :RIGPDE 2fa1A 190 :RAQAKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21589 1iicA expands to /projects/compbio/data/pdb/1iic.pdb.gz 1iicA:# 1iicA.110.226 read from T0506.t2k.many.frag # adding 1iicA to template set # found chain 1iicA in template set Warning: unaligning (T0506)R110 (1iicA)G260 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1iicA)L261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1iicA)K263 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1iicA)K265 because E (beta_S) conformation "forbidden" or filtered. T0506 112 :D 1iicA 262 :R T0506 114 :I 1iicA 264 :L T0506 116 :PDE 1iicA 266 :KED Number of specific fragments extracted= 3 number of extra gaps= 3 total=21592 2cx1A expands to /projects/compbio/data/pdb/2cx1.pdb.gz 2cx1A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cx1A.110.13 read from T0506.t2k.many.frag # adding 2cx1A to template set # found chain 2cx1A in template set Warning: unaligning (T0506)G115 (2cx1A)S18 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 2cx1A 13 :EARAL T0506 116 :PDE 2cx1A 19 :KKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21594 # 1m2dA.110.72 read from T0506.t2k.many.frag # found chain 1m2dA in training set T0506 110 :RADRIGPDE 1m2dA 73 :WYGQVKPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=21595 # 1ovnA.110.107 read from T0506.t2k.many.frag # found chain 1ovnA in template set Warning: unaligning (T0506)A111 (1ovnA)Y118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1ovnA)P122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E118 (1ovnA)V125 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :R 1ovnA 117 :E T0506 112 :DRI 1ovnA 119 :VQL T0506 116 :PD 1ovnA 123 :SH Number of specific fragments extracted= 3 number of extra gaps= 3 total=21598 # 1fuiA.110.478 read from T0506.t2k.many.frag # found chain 1fuiA in template set Warning: unaligning (T0506)D112 (1fuiA)V481 because E (beta_S) conformation "forbidden" or filtered. T0506 110 :RA 1fuiA 479 :WS T0506 113 :RIGPDE 1fuiA 482 :ELPKDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21600 1v74A expands to /projects/compbio/data/pdb/1v74.pdb.gz 1v74A:# 1v74A.110.86 read from T0506.t2k.many.frag # adding 1v74A to template set # found chain 1v74A in template set Warning: unaligning (T0506)A111 (1v74A)G678 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1v74A)N682 because N (gamma') conformation "forbidden" or filtered. T0506 110 :R 1v74A 677 :S T0506 112 :DRI 1v74A 679 :WKI T0506 116 :PDE 1v74A 683 :PDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21603 # 1vziA.110.88 read from T0506.t2k.many.frag # found chain 1vziA in training set T0506 110 :RADRIGPDE 1vziA 88 :YTQFLKPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21604 # 1whi.110.41 read from T0506.t2k.many.frag # found chain 1whi in training set T0506 110 :RADRIGPDE 1whi 42 :TVKDATPGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21605 # 1xhnA.111.119 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :ADRI 1xhnA 120 :VTKV T0506 116 :PDEV 1xhnA 125 :ETEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21607 # 1yreA.111.23 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 111 :ADRIGPDEV 1yreA 22 :LEPLVEADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21608 # 1iicA.111.227 read from T0506.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)D112 (1iicA)R262 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1iicA)K265 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 1iicA 261 :L T0506 113 :RI 1iicA 263 :KL T0506 116 :PDEV 1iicA 266 :KEDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=21611 # 1x8dA.111.6 read from T0506.t2k.many.frag # found chain 1x8dA in template set Warning: unaligning (T0506)D112 (1x8dA)M8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1x8dA)N11 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :A 1x8dA 7 :V T0506 113 :RI 1x8dA 9 :QV T0506 116 :PDEV 1x8dA 12 :PDAH Number of specific fragments extracted= 3 number of extra gaps= 2 total=21614 # 1zr6A.111.175 read from T0506.t2k.many.frag # found chain 1zr6A in template set Warning: unaligning (T0506)G115 (1zr6A)S174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V119 (1zr6A)N178 because L (left) conformation "forbidden" or filtered. T0506 111 :ADRI 1zr6A 170 :IVHV T0506 116 :PDE 1zr6A 175 :ETE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21616 # 1wlfA.111.105 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)D112 (1wlfA)E109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wlfA)S112 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1wlfA 108 :V T0506 113 :RI 1wlfA 110 :PL T0506 116 :PDEV 1wlfA 113 :ADDW Number of specific fragments extracted= 3 number of extra gaps= 2 total=21619 # 1l6rA.111.115 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)D112 (1l6rA)F114 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1l6rA 113 :G T0506 113 :RIGPDEV 1l6rA 115 :DIDPEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21621 # 1f32A.111.26 read from T0506.t2k.many.frag # found chain 1f32A in training set Warning: unaligning (T0506)D112 (1f32A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1f32A 27 :W T0506 113 :RIGPDEV 1f32A 29 :MLEGDDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21623 # 1m3yA.111.183 read from T0506.t2k.many.frag # found chain 1m3yA in template set T0506 111 :ADRIGPDEV 1m3yA 208 :YIFLDTQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=21624 # 1i12A.111.9 read from T0506.t2k.many.frag # found chain 1i12A in training set T0506 111 :ADRIGPDEV 1i12A 9 :IRRMEEGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21625 # 1gheA.111.5 read from T0506.t2k.many.frag # found chain 1gheA in training set T0506 111 :ADRIGPDEV 1gheA 6 :LRRVTAESF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21626 1sqwA expands to /projects/compbio/data/pdb/1sqw.pdb.gz 1sqwA:# 1sqwA.111.0 read from T0506.t2k.many.frag # adding 1sqwA to template set # found chain 1sqwA in template set Warning: unaligning (T0506)A111 because first residue in template chain is (1sqwA)M1 T0506 112 :DRIGPDEV 1sqwA 2 :RPLTEEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=21627 # 1nlfA.111.211 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)G115 (1nlfA)T216 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :ADRI 1nlfA 212 :LSSM T0506 116 :PDEV 1nlfA 217 :SAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21629 # 1hqsA.111.188 read from T0506.t2k.many.frag # found chain 1hqsA in training set T0506 111 :ADRIGPDEV 1hqsA 189 :IKPVSEEGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21630 # 2cx1A.111.14 read from T0506.t2k.many.frag # found chain 2cx1A in template set T0506 111 :ADRIGPDEV 2cx1A 14 :ARALSKKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=21631 # 2f9hA.111.69 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)R113 (2f9hA)K69 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :AD 2f9hA 67 :IT T0506 114 :IGPDEV 2f9hA 70 :VGSFAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=21633 # 1wd3A.111.355 read from T0506.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)D112 (1wd3A)Q374 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 1wd3A 373 :T T0506 113 :RIGPDEV 1wd3A 375 :VVDDDSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21635 # 1m1fA.111.89 read from T0506.t2k.many.frag # found chain 1m1fA in training set Warning: unaligning (T0506)D112 (1m1fA)E91 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1m1fA 90 :L T0506 113 :RIGPDEV 1m1fA 92 :RVPETIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21637 # 1vh4A.111.365 read from T0506.t2k.many.frag # found chain 1vh4A in training set Warning: unaligning (T0506)D112 (1vh4A)G365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vh4A)R366 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1vh4A 364 :V T0506 114 :IGPDEV 1vh4A 367 :IDDEQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21639 # 1tfzA.111.184 read from T0506.t2k.many.frag # found chain 1tfzA in training set Warning: unaligning (T0506)P116 (1tfzA)D190 because S (epsilon) conformation "forbidden" or filtered. T0506 111 :ADRIG 1tfzA 185 :FERVE T0506 117 :DEV 1tfzA 191 :ASS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21641 # 1m2dA.111.73 read from T0506.t2k.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)R113 (1m2dA)Q76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1m2dA)K78 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :AD 1m2dA 74 :YG T0506 114 :I 1m2dA 77 :V T0506 116 :PDEV 1m2dA 79 :PEDV Number of specific fragments extracted= 3 number of extra gaps= 2 total=21644 # 1uzbA.111.67 read from T0506.t2k.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)G115 (1uzbA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :ADRI 1uzbA 68 :TAKA T0506 116 :PDEV 1uzbA 73 :KAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21646 # 2fa1A.111.106 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)D112 (2fa1A)R189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2fa1A)Q192 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 2fa1A 188 :A T0506 113 :RI 2fa1A 190 :RA T0506 116 :PDEV 2fa1A 193 :AKEC Number of specific fragments extracted= 3 number of extra gaps= 2 total=21649 # 1xkpB.111.50 read from T0506.t2k.many.frag # found chain 1xkpB in training set Warning: unaligning (T0506)G115 (1xkpB)A55 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :ADRI 1xkpB 51 :ARSL T0506 116 :PDEV 1xkpB 56 :WHRC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21651 # 1v0jA.111.316 read from T0506.t2k.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 111 :A 1v0jA 317 :S T0506 114 :IGPDEV 1v0jA 320 :AEDDDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21653 # 2f1rA.111.73 read from T0506.t2k.many.frag # found chain 2f1rA in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2f1rA)S78 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2f1rA)S78 T0506 111 :ADR 2f1rA 74 :IRR T0506 116 :PDEV 2f1rA 79 :EEEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=21655 2bbdA expands to /projects/compbio/data/pdb/2bbd.pdb.gz 2bbdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bbdA.111.155 read from T0506.t2k.many.frag # adding 2bbdA to template set # found chain 2bbdA in template set Warning: unaligning (T0506)D112 (2bbdA)E158 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 2bbdA 157 :Y T0506 113 :RIGPDEV 2bbdA 159 :RVTAQEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21657 # 1ty9A.111.123 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D112 (1ty9A)V125 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 1ty9A 124 :A T0506 113 :RIGPDEV 1ty9A 126 :RLPNAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21659 # 1k2xA.111.10 read from T0506.t2k.many.frag # found chain 1k2xA in training set Warning: unaligning (T0506)D112 (1k2xA)G13 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1k2xA 12 :A T0506 113 :RIGPDEV 1k2xA 14 :AISRAQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=21661 # 2fckA.111.16 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)R113 (2fckA)L16 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2fckA)T18 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :AD 2fckA 14 :LR T0506 114 :I 2fckA 17 :I T0506 116 :PDEV 2fckA 19 :ADEA Number of specific fragments extracted= 3 number of extra gaps= 2 total=21664 # 1xhnA.112.120 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1xhnA 121 :TKV T0506 116 :PDEVP 1xhnA 125 :ETEMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=21666 # 1yreA.112.24 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 112 :DRIGPDEVP 1yreA 23 :EPLVEADIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=21667 # 1l6rA.112.116 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)D112 (1l6rA)F114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1l6rA)D117 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1l6rA 115 :DI T0506 116 :PDEVP 1l6rA 118 :PEDVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21669 # 1f32A.112.27 read from T0506.t2k.many.frag # found chain 1f32A in training set T0506 112 :DRIGPDEVP 1f32A 28 :TMLEGDDIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21670 # 1iicA.112.228 read from T0506.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)D112 (1iicA)R262 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1iicA)K265 because E (beta_S) conformation "forbidden" or filtered. T0506 113 :RI 1iicA 263 :KL T0506 116 :PDEVP 1iicA 266 :KEDID Number of specific fragments extracted= 2 number of extra gaps= 2 total=21672 # 1i12A.112.10 read from T0506.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)G115 (1i12A)E13 because E (beta_S) conformation "forbidden" or filtered. T0506 112 :DRI 1i12A 10 :RRM T0506 116 :PDEVP 1i12A 14 :EGDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21674 # 1sqwA.112.1 read from T0506.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0506)D112 (1sqwA)R2 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1sqwA)T5 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1sqwA 3 :PL T0506 116 :PDEVP 1sqwA 6 :EEETR Number of specific fragments extracted= 2 number of extra gaps= 2 total=21676 # 1m2dA.112.74 read from T0506.t2k.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)R113 (1m2dA)Q76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1m2dA)K78 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :D 1m2dA 75 :G T0506 114 :I 1m2dA 77 :V T0506 116 :PDEVP 1m2dA 79 :PEDVD Number of specific fragments extracted= 3 number of extra gaps= 2 total=21679 # 1x8dA.112.7 read from T0506.t2k.many.frag # found chain 1x8dA in template set Warning: unaligning (T0506)D112 (1x8dA)M8 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1x8dA)N11 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1x8dA 9 :QV T0506 116 :PDEVP 1x8dA 12 :PDAHE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21681 # 1wlfA.112.106 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)R113 (1wlfA)P110 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :D 1wlfA 109 :E T0506 114 :IGPDEVP 1wlfA 111 :LSADDWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21683 # 2cx1A.112.15 read from T0506.t2k.many.frag # found chain 2cx1A in template set Warning: unaligning (T0506)D112 (2cx1A)R15 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 2cx1A 16 :ALSKKERR Number of specific fragments extracted= 1 number of extra gaps= 1 total=21684 # 1hqsA.112.189 read from T0506.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0506)G115 (1hqsA)S193 because E (beta_S) conformation "forbidden" or filtered. T0506 112 :DRI 1hqsA 190 :KPV T0506 116 :PDEVP 1hqsA 194 :EEGTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21686 # 2fa1A.112.107 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)G115 (2fa1A)Q192 because E (beta_S) conformation "forbidden" or filtered. T0506 112 :DRI 2fa1A 189 :RRA T0506 116 :PDEVP 2fa1A 193 :AKECQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21688 # 2fckA.112.17 read from T0506.t2k.many.frag # found chain 2fckA in template set T0506 112 :DRIGPDEVP 2fckA 15 :RLITADEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21689 1wqgA expands to /projects/compbio/data/pdb/1wqg.pdb.gz 1wqgA:# 1wqgA.112.67 read from T0506.t2k.many.frag # adding 1wqgA to template set # found chain 1wqgA in template set T0506 112 :DRIGPDEVP 1wqgA 68 :KPYEANQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21690 1otjA expands to /projects/compbio/data/pdb/1otj.pdb.gz 1otjA:Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 509, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 511, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 513, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 515, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 517, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 519, because occupancy 0.500 <= existing 0.500 in 1otjA Skipped atom 521, because occupancy 0.500 <= existing 0.500 in 1otjA # 1otjA.112.210 read from T0506.t2k.many.frag # adding 1otjA to template set # found chain 1otjA in template set Warning: unaligning (T0506)R113 (1otjA)D212 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 (1otjA)V213 because Y (epsilon') conformation "forbidden" or filtered. T0506 112 :D 1otjA 211 :V T0506 115 :GPDEVP 1otjA 214 :SEKESE Number of specific fragments extracted= 2 number of extra gaps= 1 total=21692 # 1yx1A.112.203 read from T0506.t2k.many.frag # found chain 1yx1A in template set T0506 112 :DRIGPDEVP 1yx1A 202 :VPPSAADLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21693 2aalA expands to /projects/compbio/data/pdb/2aal.pdb.gz 2aalA:Bad short name: C1 for alphabet: pdb_atoms Bad short name: C2 for alphabet: pdb_atoms Bad short name: C3 for alphabet: pdb_atoms Bad short name: O6 for alphabet: pdb_atoms Bad short name: O8 for alphabet: pdb_atoms Bad short name: O9 for alphabet: pdb_atoms Skipped atom 105, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 111, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 113, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 115, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 117, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 158, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 160, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 162, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 164, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 166, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 168, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 548, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 550, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 552, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 927, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 929, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 931, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 933, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 935, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 937, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 939, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 941, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 945, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 947, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 969, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 971, because occupancy 0.500 <= existing 0.500 in 2aalA Skipped atom 973, because occupancy 0.500 <= existing 0.500 in 2aalA # 2aalA.112.73 read from T0506.t2k.many.frag # adding 2aalA to template set # found chain 2aalA in template set Warning: unaligning (T0506)G115 (2aalA)S76 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 2aalA 73 :RPR T0506 116 :PDEVP 2aalA 77 :EEQKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21695 # 1m1fA.112.90 read from T0506.t2k.many.frag # found chain 1m1fA in training set Warning: unaligning (T0506)D112 (1m1fA)E91 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 1m1fA 92 :RVPETIMN Number of specific fragments extracted= 1 number of extra gaps= 1 total=21696 # 1ex2A.112.126 read from T0506.t2k.many.frag # found chain 1ex2A in template set Warning: unaligning (T0506)G115 (1ex2A)S130 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1ex2A 127 :WSL T0506 116 :PDEVP 1ex2A 131 :EEEIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=21698 # 1vh4A.112.366 read from T0506.t2k.many.frag # found chain 1vh4A in training set Warning: unaligning (T0506)D112 (1vh4A)G365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1vh4A)D368 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1vh4A 366 :RI T0506 116 :PDEVP 1vh4A 369 :DEQIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=21700 # 1zr6A.112.176 read from T0506.t2k.many.frag # found chain 1zr6A in template set Warning: unaligning (T0506)G115 (1zr6A)S174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V119 (1zr6A)N178 because L (left) conformation "forbidden" or filtered. T0506 112 :DRI 1zr6A 171 :VHV T0506 116 :PDE 1zr6A 175 :ETE T0506 120 :P 1zr6A 179 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=21703 # 1uzbA.112.68 read from T0506.t2k.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)D112 (1uzbA)A69 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 1uzbA 70 :KAGKAEAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21704 1em9A expands to /projects/compbio/data/pdb/1em9.pdb.gz 1em9A:# 1em9A.112.11 read from T0506.t2k.many.frag # adding 1em9A to template set # found chain 1em9A in template set T0506 112 :DRIGPDEVP 1em9A 12 :TPLEPKLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21705 1q3iA expands to /projects/compbio/data/pdb/1q3i.pdb.gz 1q3iA:# 1q3iA.112.142 read from T0506.t2k.many.frag # adding 1q3iA to template set # found chain 1q3iA in template set Warning: unaligning (T0506)D112 (1q3iA)I521 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1q3iA)D524 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1q3iA 522 :PL T0506 116 :PDEVP 1q3iA 525 :KEMQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=21707 # 1crzA.112.106 read from T0506.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)G115 (1crzA)N116 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1crzA 113 :YKV T0506 116 :PDEVP 1crzA 117 :KQWLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21709 # 1xkpB.112.51 read from T0506.t2k.many.frag # found chain 1xkpB in training set T0506 112 :DRIGPDEVP 1xkpB 52 :RSLAWHRCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21710 # 1e29A.112.18 read from T0506.t2k.many.frag # found chain 1e29A in training set T0506 112 :DRIGPDEVP 1e29A 19 :TTLTARQFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21711 # 1m3yA.112.184 read from T0506.t2k.many.frag # found chain 1m3yA in template set Warning: unaligning (T0506)G115 (1m3yA)D212 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1m3yA 209 :IFL T0506 116 :PDEVP 1m3yA 213 :TQERT Number of specific fragments extracted= 2 number of extra gaps= 1 total=21713 # 1i0vA.112.8 read from T0506.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0506)G115 (1i0vA)S12 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1i0vA 9 :NCY T0506 116 :PDEVP 1i0vA 13 :SSDVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=21715 # 1l6rA.113.117 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)G115 (1l6rA)D117 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1l6rA 115 :DI T0506 116 :PDEVPL 1l6rA 118 :PEDVDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21717 # 1xhnA.113.121 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 113 :RIGPDEVPL 1xhnA 122 :KVNETEMDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21718 # 1yreA.113.25 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 113 :RIGPDEVPL 1yreA 24 :PLVEADIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21719 # 1iicA.113.229 read from T0506.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)G115 (1iicA)K265 because E (beta_S) conformation "forbidden" or filtered. T0506 113 :RI 1iicA 263 :KL T0506 116 :PDEVPL 1iicA 266 :KEDIDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=21721 # 1wqgA.113.68 read from T0506.t2k.many.frag # found chain 1wqgA in template set Warning: unaligning (T0506)G115 (1wqgA)E71 because E (beta_S) conformation "forbidden" or filtered. T0506 113 :RI 1wqgA 69 :PY T0506 116 :PDEVPL 1wqgA 72 :ANQLRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21723 # 1f32A.113.28 read from T0506.t2k.many.frag # found chain 1f32A in training set Warning: unaligning (T0506)G115 (1f32A)E31 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1f32A)G32 because S (epsilon) conformation "forbidden" or filtered. T0506 113 :RI 1f32A 29 :ML T0506 117 :DEVPL 1f32A 33 :DDIQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21725 # 1sqwA.113.2 read from T0506.t2k.many.frag # found chain 1sqwA in template set Warning: unaligning (T0506)G115 (1sqwA)T5 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1sqwA 3 :PL T0506 116 :PDEVPL 1sqwA 6 :EEETRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21727 # 1wlfA.113.107 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)R113 (1wlfA)P110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wlfA)S112 because Y (epsilon') conformation "forbidden" or filtered. T0506 114 :I 1wlfA 111 :L T0506 116 :PDEVPL 1wlfA 113 :ADDWEI Number of specific fragments extracted= 2 number of extra gaps= 2 total=21729 # 1g61A.113.165 read from T0506.t2k.many.frag # found chain 1g61A in training set T0506 113 :RIGPDEVPL 1g61A 2166 :LVEDDELEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21730 # 2fckA.113.18 read from T0506.t2k.many.frag # found chain 2fckA in template set T0506 113 :RIGPDEVPL 2fckA 16 :LITADEAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21731 # 1m2dA.113.75 read from T0506.t2k.many.frag # found chain 1m2dA in training set T0506 113 :RIGPDEVPL 1m2dA 76 :QVKPEDVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21732 # 1i12A.113.11 read from T0506.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)R113 (1i12A)R11 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1i12A)E13 because E (beta_S) conformation "forbidden" or filtered. T0506 114 :I 1i12A 12 :M T0506 116 :PDEVPL 1i12A 14 :EGDLEQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=21734 # 2fa1A.113.108 read from T0506.t2k.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)P116 (2fa1A)A193 because S (epsilon) conformation "forbidden" or filtered. T0506 113 :RIG 2fa1A 190 :RAQ T0506 117 :DEVPL 2fa1A 194 :KECQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=21736 # 1x8dA.113.8 read from T0506.t2k.many.frag # found chain 1x8dA in template set T0506 113 :RIGPDEVPL 1x8dA 9 :QVNPDAHEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21737 2fiyA expands to /projects/compbio/data/pdb/2fiy.pdb.gz 2fiyA:# 2fiyA.113.22 read from T0506.t2k.many.frag # adding 2fiyA to template set # found chain 2fiyA in template set T0506 113 :RIGPDEVPL 2fiyA 23 :QPSRDLFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21738 # 1xkpB.113.52 read from T0506.t2k.many.frag # found chain 1xkpB in training set Warning: unaligning (T0506)G115 (1xkpB)A55 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1xkpB 53 :SL T0506 116 :PDEVPL 1xkpB 56 :WHRCED Number of specific fragments extracted= 2 number of extra gaps= 1 total=21740 # 1otjA.113.211 read from T0506.t2k.many.frag # found chain 1otjA in template set Warning: unaligning (T0506)G115 (1otjA)S214 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1otjA 212 :DV T0506 116 :PDEVPL 1otjA 215 :EKESEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=21742 # 1uzbA.113.69 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 113 :RIGPDEVPL 1uzbA 70 :KAGKAEAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21743 # 1i0vA.113.9 read from T0506.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0506)G115 (1i0vA)S12 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1i0vA 10 :CY T0506 116 :PDEVPL 1i0vA 13 :SSDVST Number of specific fragments extracted= 2 number of extra gaps= 1 total=21745 2blfB expands to /projects/compbio/data/pdb/2blf.pdb.gz 2blfB:# 2blfB.113.63 read from T0506.t2k.many.frag # adding 2blfB to template set # found chain 2blfB in template set T0506 113 :RIGPDEVPL 2blfB 564 :PVDEADAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21746 # 1hqsA.113.190 read from T0506.t2k.many.frag # found chain 1hqsA in training set T0506 113 :RIGPDEVPL 1hqsA 191 :PVSEEGTSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21747 1vgjA expands to /projects/compbio/data/pdb/1vgj.pdb.gz 1vgjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vgjA.113.47 read from T0506.t2k.many.frag # adding 1vgjA to template set # found chain 1vgjA in template set T0506 113 :RIGPDEVPL 1vgjA 48 :EITEEQAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21748 # 1vh4A.113.367 read from T0506.t2k.many.frag # found chain 1vh4A in training set Warning: unaligning (T0506)G115 (1vh4A)D368 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1vh4A 366 :RI T0506 116 :PDEVPL 1vh4A 369 :DEQIFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21750 1eayC expands to /projects/compbio/data/pdb/1eay.pdb.gz 1eayC:# 1eayC.113.11 read from T0506.t2k.many.frag # adding 1eayC to template set # found chain 1eayC in template set Warning: unaligning (T0506)D117 (1eayC)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 113 :RIGP 1eayC 166 :RLKA T0506 118 :EVPL 1eayC 171 :EVDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21752 # 1yx1A.113.204 read from T0506.t2k.many.frag # found chain 1yx1A in template set Warning: unaligning (T0506)G115 (1yx1A)S205 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1yx1A 203 :PP T0506 116 :PDEVPL 1yx1A 206 :AADLQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=21754 # 2f06A.113.79 read from T0506.t2k.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)R113 (2f06A)P77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (2f06A)G81 because T (delta_L) conformation "forbidden" or filtered. T0506 114 :IGP 2f06A 78 :NVP T0506 118 :EVPL 2f06A 82 :ALAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=21756 1jkoC expands to /projects/compbio/data/pdb/1jko.pdb.gz 1jkoC:# 1jkoC.113.4 read from T0506.t2k.many.frag # adding 1jkoC to template set # found chain 1jkoC in template set Warning: unaligning (T0506)R113 (1jkoC)A143 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1jkoC)N145 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1jkoC 144 :I T0506 116 :PDEVPL 1jkoC 146 :KHEQEQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=21758 1zavA expands to /projects/compbio/data/pdb/1zav.pdb.gz 1zavA:Skipped atom 692, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 694, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 696, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 698, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 700, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1zavA Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1zavA # 1zavA.113.31 read from T0506.t2k.many.frag # adding 1zavA to template set # found chain 1zavA in template set Warning: unaligning (T0506)R113 (1zavA)G31 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1zavA)T33 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1zavA 32 :F T0506 116 :PDEVPL 1zavA 34 :VADLTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=21760 # 2aalA.113.74 read from T0506.t2k.many.frag # found chain 2aalA in template set Warning: unaligning (T0506)G115 (2aalA)S76 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 2aalA 74 :PR T0506 116 :PDEVPL 2aalA 77 :EEQKVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=21762 1regX expands to /projects/compbio/data/pdb/1reg.pdb.gz 1regX:# 1regX.113.5 read from T0506.t2k.many.frag # adding 1regX to template set # found chain 1regX in template set Warning: unaligning (T0506)G115 (1regX)K8 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RI 1regX 6 :LK T0506 116 :PDEVPL 1regX 9 :PEDFLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=21764 # 1yreA.114.26 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 114 :IGPDEVPLA 1yreA 25 :LVEADIPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21765 # 1iicA.114.230 read from T0506.t2k.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)G115 (1iicA)K265 because E (beta_S) conformation "forbidden" or filtered. T0506 114 :I 1iicA 264 :L T0506 116 :PDEVPLA 1iicA 266 :KEDIDQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21767 # 1m2dA.114.76 read from T0506.t2k.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)G115 (1m2dA)K78 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1m2dA 77 :V T0506 116 :PDEVPLA 1m2dA 79 :PEDVDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21769 # 1l6rA.114.118 read from T0506.t2k.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)G115 (1l6rA)D117 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1l6rA 116 :I T0506 116 :PDEVPLA 1l6rA 118 :PEDVDYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21771 # 1xhnA.114.122 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 114 :IGPDEVPLA 1xhnA 123 :VNETEMDIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21772 # 1wqgA.114.69 read from T0506.t2k.many.frag # found chain 1wqgA in template set T0506 114 :IGPDEVPLA 1wqgA 70 :YEANQLRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21773 # 1i12A.114.12 read from T0506.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)G115 (1i12A)E13 because E (beta_S) conformation "forbidden" or filtered. T0506 114 :I 1i12A 12 :M T0506 116 :PDEVPLA 1i12A 14 :EGDLEQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21775 # 1g61A.114.166 read from T0506.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0506)G115 (1g61A)E2168 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1g61A 2167 :V T0506 116 :PDEVPLA 1g61A 2169 :DDELEFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21777 # 1eayC.114.12 read from T0506.t2k.many.frag # found chain 1eayC in template set T0506 114 :IGPDEVPLA 1eayC 167 :LKAGEVDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21778 # 2fckA.114.19 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)G115 (2fckA)T18 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 2fckA 17 :I T0506 116 :PDEVPLA 2fckA 19 :ADEAEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21780 1vpqA expands to /projects/compbio/data/pdb/1vpq.pdb.gz 1vpqA:Skipped atom 1424, because occupancy 0.350 <= existing 0.650 in 1vpqA Skipped atom 1426, because occupancy 0.350 <= existing 0.650 in 1vpqA Skipped atom 1428, because occupancy 0.350 <= existing 0.650 in 1vpqA # 1vpqA.114.223 read from T0506.t2k.many.frag # adding 1vpqA to template set # found chain 1vpqA in template set Warning: unaligning (T0506)G115 (1vpqA)S213 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1vpqA 212 :Y T0506 116 :PDEVPLA 1vpqA 214 :EEELKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21782 # 1i0vA.114.10 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 114 :IGPDEVPLA 1i0vA 11 :YSSSDVSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21783 # 1jfbA.114.159 read from T0506.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)G115 (1jfbA)P160 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1jfbA 159 :V T0506 116 :PDEVPLA 1jfbA 161 :FNDLEYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21785 # 1zupA.114.249 read from T0506.t2k.many.frag # found chain 1zupA in template set T0506 114 :IGPDEVPLA 1zupA 238 :KDDNQIPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21786 # 1x8dA.114.9 read from T0506.t2k.many.frag # found chain 1x8dA in template set T0506 114 :IGPDEVPLA 1x8dA 10 :VNPDAHEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21787 # 2f06A.114.80 read from T0506.t2k.many.frag # found chain 2f06A in template set T0506 114 :IGPDEVPLA 2f06A 78 :NVPGALAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21788 # 1vgjA.114.48 read from T0506.t2k.many.frag # found chain 1vgjA in template set Warning: unaligning (T0506)G115 (1vgjA)T50 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1vgjA 49 :I T0506 116 :PDEVPLA 1vgjA 51 :EEQAEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21790 # 1otjA.114.212 read from T0506.t2k.many.frag # found chain 1otjA in template set T0506 114 :IGPDEVPLA 1otjA 213 :VSEKESEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21791 # 1jkoC.114.5 read from T0506.t2k.many.frag # found chain 1jkoC in template set Warning: unaligning (T0506)G115 (1jkoC)N145 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1jkoC 144 :I T0506 116 :PDEVPLA 1jkoC 146 :KHEQEQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21793 # 1no5A.114.8 read from T0506.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0506)G115 (1no5A)K10 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1no5A 9 :I T0506 116 :PDEVPLA 1no5A 11 :SEELAIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21795 # 1regX.114.6 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 114 :IGPDEVPLA 1regX 7 :KKPEDFLKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21796 1usyA expands to /projects/compbio/data/pdb/1usy.pdb.gz 1usyA:# 1usyA.114.141 read from T0506.t2k.many.frag # adding 1usyA to template set # found chain 1usyA in template set Warning: unaligning (T0506)G115 (1usyA)P143 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1usyA 142 :I T0506 116 :PDEVPLA 1usyA 144 :KDLHEKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21798 # 1bjt.114.538 read from T0506.t2k.many.frag # found chain 1bjt in template set T0506 114 :IGPDEVPLA 1bjt 947 :LSPEEMAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21799 # 1zavA.114.32 read from T0506.t2k.many.frag # found chain 1zavA in template set Warning: unaligning (T0506)G115 (1zavA)T33 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1zavA 32 :F T0506 116 :PDEVPLA 1zavA 34 :VADLTEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=21801 1wwhA expands to /projects/compbio/data/pdb/1wwh.pdb.gz 1wwhA:# 1wwhA.114.31 read from T0506.t2k.many.frag # adding 1wwhA to template set # found chain 1wwhA in template set T0506 114 :IGPDEVPLA 1wwhA 180 :FPQASASYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21802 1zymA expands to /projects/compbio/data/pdb/1zym.pdb.gz 1zymA:# 1zymA.114.30 read from T0506.t2k.many.frag # adding 1zymA to template set # found chain 1zymA in template set T0506 114 :IGPDEVPLA 1zymA 31 :ISADQVDQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21803 1tuwA expands to /projects/compbio/data/pdb/1tuw.pdb.gz 1tuwA:# 1tuwA.114.10 read from T0506.t2k.many.frag # adding 1tuwA to template set # found chain 1tuwA in template set Warning: unaligning (T0506)G115 (1tuwA)D12 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1tuwA 11 :M T0506 116 :PDEVPLA 1tuwA 13 :PADAEHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=21805 2f02A expands to /projects/compbio/data/pdb/2f02.pdb.gz 2f02A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f02A.114.110 read from T0506.t2k.many.frag # adding 2f02A to template set # found chain 2f02A in template set Warning: unaligning (T0506)G115 (2f02A)S110 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 2f02A 109 :V T0506 116 :PDEVPLA 2f02A 111 :PEEISNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=21807 # 1r29A.114.94 read from T0506.t2k.many.frag # found chain 1r29A in training set T0506 114 :IGPDEVPLA 1r29A 97 :LREGNIMAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21808 # 1vyrA.114.150 read from T0506.t2k.many.frag # found chain 1vyrA in training set Warning: unaligning (T0506)G115 (1vyrA)E152 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1vyrA 151 :L T0506 116 :PDEVPLA 1vyrA 153 :LDEIPGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=21810 # 1yreA.115.27 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 115 :GPDEVPLAI 1yreA 26 :VEADIPELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21811 # 1zupA.115.250 read from T0506.t2k.many.frag # found chain 1zupA in template set T0506 115 :GPDEVPLAI 1zupA 239 :DDNQIPYIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21812 # 1iicA.115.231 read from T0506.t2k.many.frag # found chain 1iicA in template set T0506 115 :GPDEVPLAI 1iicA 265 :KKEDIDQVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21813 # 1m2dA.115.77 read from T0506.t2k.many.frag # found chain 1m2dA in training set T0506 115 :GPDEVPLAI 1m2dA 78 :KPEDVDEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21814 # 1xhnA.115.123 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 115 :GPDEVPLAI 1xhnA 124 :NETEMDIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21815 # 1l6rA.115.119 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 115 :GPDEVPLAI 1l6rA 117 :DPEDVDYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21816 # 1wqgA.115.70 read from T0506.t2k.many.frag # found chain 1wqgA in template set T0506 115 :GPDEVPLAI 1wqgA 71 :EANQLRAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21817 # 1tuwA.115.11 read from T0506.t2k.many.frag # found chain 1tuwA in template set T0506 115 :GPDEVPLAI 1tuwA 12 :DPADAEHVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21818 # 2fckA.115.20 read from T0506.t2k.many.frag # found chain 2fckA in template set T0506 115 :GPDEVPLAI 2fckA 18 :TADEAEELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21819 # 1wwhA.115.32 read from T0506.t2k.many.frag # found chain 1wwhA in template set T0506 115 :GPDEVPLAI 1wwhA 181 :PQASASYIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21820 # 1no5A.115.9 read from T0506.t2k.many.frag # found chain 1no5A in training set Warning: unaligning (T0506)G115 (1no5A)K10 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1no5A 11 :SEELAIVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21821 # 1i12A.115.13 read from T0506.t2k.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)G115 (1i12A)E13 because E (beta_S) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1i12A 14 :EGDLEQVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21822 # 1g61A.115.167 read from T0506.t2k.many.frag # found chain 1g61A in training set Warning: unaligning (T0506)G115 (1g61A)E2168 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1g61A 2169 :DDELEFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21823 # 1jfbA.115.160 read from T0506.t2k.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)G115 (1jfbA)P160 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1jfbA 161 :FNDLEYLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=21824 # 1y0hA.115.17 read from T0506.t2k.many.frag # found chain 1y0hA in training set Warning: unaligning (T0506)G115 (1y0hA)R15 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1y0hA 16 :PDARSALR Number of specific fragments extracted= 1 number of extra gaps= 1 total=21825 # 1usyA.115.142 read from T0506.t2k.many.frag # found chain 1usyA in template set T0506 115 :GPDEVPLAI 1usyA 143 :PKDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21826 # 1vfjA.115.8 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)G115 (1vfjA)R9 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1vfjA 10 :PEKLNEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21827 # 1i0vA.115.11 read from T0506.t2k.many.frag # found chain 1i0vA in training set Warning: unaligning (T0506)G115 (1i0vA)S12 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1i0vA 13 :SSDVSTAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=21828 # 1zavA.115.33 read from T0506.t2k.many.frag # found chain 1zavA in template set T0506 115 :GPDEVPLAI 1zavA 33 :TVADLTELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21829 2bbrA expands to /projects/compbio/data/pdb/2bbr.pdb.gz 2bbrA:# 2bbrA.115.107 read from T0506.t2k.many.frag # adding 2bbrA to template set # found chain 2bbrA in template set T0506 115 :GPDEVPLAI 2bbrA 108 :DSSELRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21830 # 1otjA.115.213 read from T0506.t2k.many.frag # found chain 1otjA in template set T0506 115 :GPDEVPLAI 1otjA 214 :SEKESEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21831 # 1vyrA.115.151 read from T0506.t2k.many.frag # found chain 1vyrA in training set Warning: unaligning (T0506)G115 (1vyrA)E152 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1vyrA 153 :LDEIPGIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21832 # 1vgjA.115.49 read from T0506.t2k.many.frag # found chain 1vgjA in template set Warning: unaligning (T0506)G115 (1vgjA)T50 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1vgjA 51 :EEQAEEIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21833 # 1eayC.115.13 read from T0506.t2k.many.frag # found chain 1eayC in template set Warning: unaligning (T0506)G115 (1eayC)K168 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1eayC 169 :AGEVDLLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=21834 # 1r29A.115.95 read from T0506.t2k.many.frag # found chain 1r29A in training set Warning: unaligning (T0506)G115 (1r29A)R98 because E (beta_S) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1r29A 99 :EGNIMAVM Number of specific fragments extracted= 1 number of extra gaps= 1 total=21835 # 1vpqA.115.224 read from T0506.t2k.many.frag # found chain 1vpqA in template set T0506 115 :GPDEVPLAI 1vpqA 213 :SEEELKTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21836 1xizA expands to /projects/compbio/data/pdb/1xiz.pdb.gz 1xizA:# 1xizA.115.112 read from T0506.t2k.many.frag # adding 1xizA to template set # found chain 1xizA in template set T0506 115 :GPDEVPLAI 1xizA 111 :ESNKQLNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21837 # 1regX.115.7 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)G115 (1regX)K8 because Y (epsilon') conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1regX 9 :PEDFLKVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=21838 # 1w1hA.115.25 read from T0506.t2k.many.frag # found chain 1w1hA in training set T0506 115 :GPDEVPLAI 1w1hA 431 :SEDEKRLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21839 # 1zymA.115.31 read from T0506.t2k.many.frag # found chain 1zymA in template set Warning: unaligning (T0506)G115 (1zymA)S32 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1zymA 33 :ADQVDQEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21840 # 1yreA.116.28 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 116 :PDEVPLAIA 1yreA 27 :EADIPELVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21841 # 1zupA.116.251 read from T0506.t2k.many.frag # found chain 1zupA in template set T0506 116 :PDEVPLAIA 1zupA 240 :DNQIPYIRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21842 # 1xhnA.116.124 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 116 :PDEVPLAIA 1xhnA 125 :ETEMDIAKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21843 # 2bbrA.116.108 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 116 :PDEVPLAIA 2bbrA 109 :SSELRALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21844 # 1tuwA.116.12 read from T0506.t2k.many.frag # found chain 1tuwA in template set T0506 116 :PDEVPLAIA 1tuwA 13 :PADAEHVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21845 # 1l6rA.116.120 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 116 :PDEVPLAIA 1l6rA 118 :PEDVDYVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21846 # 1jfbA.116.161 read from T0506.t2k.many.frag # found chain 1jfbA in training set T0506 116 :PDEVPLAIA 1jfbA 161 :FNDLEYLTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21847 # 1no5A.116.10 read from T0506.t2k.many.frag # found chain 1no5A in training set T0506 116 :PDEVPLAIA 1no5A 11 :SEELAIVKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21848 # 1vfjA.116.9 read from T0506.t2k.many.frag # found chain 1vfjA in training set T0506 116 :PDEVPLAIA 1vfjA 10 :PEKLNEVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21849 # 1m2dA.116.78 read from T0506.t2k.many.frag # found chain 1m2dA in training set T0506 116 :PDEVPLAIA 1m2dA 79 :PEDVDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21850 # 1zavA.116.34 read from T0506.t2k.many.frag # found chain 1zavA in template set T0506 116 :PDEVPLAIA 1zavA 34 :VADLTELRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21851 # 1vyrA.116.152 read from T0506.t2k.many.frag # found chain 1vyrA in training set T0506 116 :PDEVPLAIA 1vyrA 153 :LDEIPGIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21852 # 1iicA.116.232 read from T0506.t2k.many.frag # found chain 1iicA in template set T0506 116 :PDEVPLAIA 1iicA 266 :KEDIDQVFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21853 # 1i0vA.116.12 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 116 :PDEVPLAIA 1i0vA 13 :SSDVSTAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21854 1dp4A expands to /projects/compbio/data/pdb/1dp4.pdb.gz 1dp4A:Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1640, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2126, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2128, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2130, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2132, because occupancy 0.500 <= existing 0.500 in 1dp4A Skipped atom 2134, because occupancy 0.500 <= existing 0.500 in 1dp4A # 1dp4A.116.192 read from T0506.t2k.many.frag # adding 1dp4A to template set # found chain 1dp4A in template set T0506 116 :PDEVPLAIA 1dp4A 193 :PDHYPKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21855 1ppjB expands to /projects/compbio/data/pdb/1ppj.pdb.gz 1ppjB:# 1ppjB.116.112 read from T0506.t2k.many.frag # adding 1ppjB to template set # found chain 1ppjB in template set T0506 116 :PDEVPLAIA 1ppjB 113 :RDDVDILME Number of specific fragments extracted= 1 number of extra gaps= 0 total=21856 # 1g61A.116.168 read from T0506.t2k.many.frag # found chain 1g61A in training set T0506 116 :PDEVPLAIA 1g61A 2169 :DDELEFLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21857 # 1vgjA.116.50 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 116 :PDEVPLAIA 1vgjA 51 :EEQAEEIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21858 # 1ryiA.116.284 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 116 :PDEVPLAIA 1ryiA 272 :LGGLESVMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21859 1rqbA expands to /projects/compbio/data/pdb/1rqb.pdb.gz 1rqbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rqbA.116.282 read from T0506.t2k.many.frag # adding 1rqbA to template set # found chain 1rqbA in template set T0506 116 :PDEVPLAIA 1rqbA 272 :YDRLHKIRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21860 # 1y0hA.116.18 read from T0506.t2k.many.frag # found chain 1y0hA in training set T0506 116 :PDEVPLAIA 1y0hA 16 :PDARSALRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21861 # 1zymA.116.32 read from T0506.t2k.many.frag # found chain 1zymA in template set T0506 116 :PDEVPLAIA 1zymA 33 :ADQVDQEVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21862 # 1wwhA.116.33 read from T0506.t2k.many.frag # found chain 1wwhA in template set T0506 116 :PDEVPLAIA 1wwhA 182 :QASASYILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21863 1zx1A expands to /projects/compbio/data/pdb/1zx1.pdb.gz 1zx1A:Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 1zx1A Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 1zx1A # 1zx1A.116.197 read from T0506.t2k.many.frag # adding 1zx1A to template set # found chain 1zx1A in template set T0506 116 :PDEVPLAIA 1zx1A 197 :EEERKGMVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21864 # 1hbnB.116.148 read from T0506.t2k.many.frag # found chain 1hbnB in training set T0506 116 :PDEVPLAIA 1hbnB 150 :MYDANMVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21865 # 1u4bA.116.432 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 116 :PDEVPLAIA 1u4bA 729 :RKEAAEFIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21866 # 2f02A.116.112 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 116 :PDEVPLAIA 2f02A 111 :PEEISNFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21867 1r6fA expands to /projects/compbio/data/pdb/1r6f.pdb.gz 1r6fA:# 1r6fA.116.42 read from T0506.t2k.many.frag # adding 1r6fA to template set # found chain 1r6fA in template set T0506 116 :PDEVPLAIA 1r6fA 65 :TDDIELLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21868 # 1otjA.116.214 read from T0506.t2k.many.frag # found chain 1otjA in template set T0506 116 :PDEVPLAIA 1otjA 215 :EKESEALLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21869 # 2bmoA.116.260 read from T0506.t2k.many.frag # found chain 2bmoA in template set T0506 116 :PDEVPLAIA 2bmoA 261 :ADMIPDLMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21870 # 1yreA.117.29 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 117 :DEVPLAIAR 1yreA 28 :ADIPELVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21871 # 1xhnA.117.125 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 117 :DEVPLAIAR 1xhnA 126 :TEMDIAKHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21872 # 2bbrA.117.109 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 117 :DEVPLAIAR 2bbrA 110 :SELRALRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21873 # 1zupA.117.252 read from T0506.t2k.many.frag # found chain 1zupA in template set T0506 117 :DEVPLAIAR 1zupA 241 :NQIPYIRKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21874 # 1rqbA.117.283 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 117 :DEVPLAIAR 1rqbA 273 :DRLHKIRDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21875 # 1t82A.117.12 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 117 :DEVPLAIAR 1t82A 3 :ELLNRLRQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21876 # 1zavA.117.35 read from T0506.t2k.many.frag # found chain 1zavA in template set T0506 117 :DEVPLAIAR 1zavA 35 :ADLTELRSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21877 # 1jfbA.117.162 read from T0506.t2k.many.frag # found chain 1jfbA in training set T0506 117 :DEVPLAIAR 1jfbA 162 :NDLEYLTQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21878 # 1dp4A.117.193 read from T0506.t2k.many.frag # found chain 1dp4A in template set T0506 117 :DEVPLAIAR 1dp4A 194 :DHYPKLLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21879 # 1ryiA.117.285 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 117 :DEVPLAIAR 1ryiA 273 :GGLESVMKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21880 # 1tuwA.117.13 read from T0506.t2k.many.frag # found chain 1tuwA in template set T0506 117 :DEVPLAIAR 1tuwA 14 :ADAEHVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21881 # 1no5A.117.11 read from T0506.t2k.many.frag # found chain 1no5A in training set T0506 117 :DEVPLAIAR 1no5A 12 :EELAIVKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21882 # 1i0vA.117.13 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 117 :DEVPLAIAR 1i0vA 14 :SDVSTAQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21883 # 1l6rA.117.121 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 117 :DEVPLAIAR 1l6rA 119 :EDVDYVRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21884 # 1vfjA.117.10 read from T0506.t2k.many.frag # found chain 1vfjA in training set T0506 117 :DEVPLAIAR 1vfjA 11 :EKLNEVLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21885 1ev7A expands to /projects/compbio/data/pdb/1ev7.pdb.gz 1ev7A:# 1ev7A.117.12 read from T0506.t2k.many.frag # adding 1ev7A to template set # found chain 1ev7A in template set T0506 117 :DEVPLAIAR 1ev7A 13 :DDLERVRAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21886 1b3tA expands to /projects/compbio/data/pdb/1b3t.pdb.gz 1b3tA:# 1b3tA.117.54 read from T0506.t2k.many.frag # adding 1b3tA to template set # found chain 1b3tA in template set T0506 117 :DEVPLAIAR 1b3tA 515 :TSLYNLRRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21887 # 2bmoA.117.261 read from T0506.t2k.many.frag # found chain 2bmoA in template set T0506 117 :DEVPLAIAR 2bmoA 262 :DMIPDLMAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21888 # 1r6fA.117.43 read from T0506.t2k.many.frag # found chain 1r6fA in template set T0506 117 :DEVPLAIAR 1r6fA 66 :DDIELLKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21889 # 1vgjA.117.51 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 117 :DEVPLAIAR 1vgjA 52 :EQAEEIKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21890 # 2f02A.117.113 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 117 :DEVPLAIAR 2f02A 112 :EEISNFLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21891 1y1pA expands to /projects/compbio/data/pdb/1y1p.pdb.gz 1y1pA:# 1y1pA.117.45 read from T0506.t2k.many.frag # adding 1y1pA to template set # found chain 1y1pA in template set T0506 117 :DEVPLAIAR 1y1pA 47 :SKLANLQKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21892 1wvqA expands to /projects/compbio/data/pdb/1wvq.pdb.gz 1wvqA:Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O3P for alphabet: pdb_atoms # 1wvqA.117.29 read from T0506.t2k.many.frag # adding 1wvqA to template set # found chain 1wvqA in template set T0506 117 :DEVPLAIAR 1wvqA 30 :KTVEDLYEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21893 # 1uzbA.117.73 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 117 :DEVPLAIAR 1uzbA 74 :AEAEAALEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21894 2a1xA expands to /projects/compbio/data/pdb/2a1x.pdb.gz 2a1xA:# 2a1xA.117.45 read from T0506.t2k.many.frag # adding 2a1xA to template set # found chain 2a1xA in template set T0506 117 :DEVPLAIAR 2a1xA 76 :ADIQRFRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21895 # 1u4bA.117.433 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 117 :DEVPLAIAR 1u4bA 730 :KEAAEFIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=21896 # 1vyrA.117.153 read from T0506.t2k.many.frag # found chain 1vyrA in training set T0506 117 :DEVPLAIAR 1vyrA 154 :DEIPGIVND Number of specific fragments extracted= 1 number of extra gaps= 0 total=21897 # 1y0hA.117.19 read from T0506.t2k.many.frag # found chain 1y0hA in training set T0506 117 :DEVPLAIAR 1y0hA 17 :DARSALRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21898 # 1rjdA.117.209 read from T0506.t2k.many.frag # found chain 1rjdA in training set T0506 117 :DEVPLAIAR 1rjdA 210 :NESQLLINT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21899 # 1u7lA.117.240 read from T0506.t2k.many.frag # found chain 1u7lA in training set T0506 117 :DEVPLAIAR 1u7lA 241 :KNVQEFTTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21900 # 2bbrA.118.110 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 118 :EVPLAIARY 2bbrA 111 :ELRALRLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21901 # 1yreA.118.30 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 118 :EVPLAIARY 1yreA 29 :DIPELVSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21902 # 1xhnA.118.126 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 118 :EVPLAIARY 1xhnA 127 :EMDIAKHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21903 # 1rqbA.118.284 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 118 :EVPLAIARY 1rqbA 274 :RLHKIRDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21904 # 1zupA.118.253 read from T0506.t2k.many.frag # found chain 1zupA in template set T0506 118 :EVPLAIARY 1zupA 242 :QIPYIRKVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21905 # 1t82A.118.13 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 118 :EVPLAIARY 1t82A 4 :LLNRLRQTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=21906 # 1b3tA.118.55 read from T0506.t2k.many.frag # found chain 1b3tA in template set T0506 118 :EVPLAIARY 1b3tA 516 :SLYNLRRGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21907 # 1ev7A.118.13 read from T0506.t2k.many.frag # found chain 1ev7A in template set T0506 118 :EVPLAIARY 1ev7A 14 :DLERVRATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21908 # 1zavA.118.36 read from T0506.t2k.many.frag # found chain 1zavA in template set T0506 118 :EVPLAIARY 1zavA 36 :DLTELRSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21909 # 1i0vA.118.14 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 118 :EVPLAIARY 1i0vA 15 :DVSTAQAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21910 # 1pdo.118.39 read from T0506.t2k.many.frag # found chain 1pdo in training set T0506 118 :EVPLAIARY 1pdo 41 :NAETLIEKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21911 # 1u4bA.118.434 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 118 :EVPLAIARY 1u4bA 731 :EAAEFIERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21912 # 1r6fA.118.44 read from T0506.t2k.many.frag # found chain 1r6fA in template set T0506 118 :EVPLAIARY 1r6fA 67 :DIELLKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21913 # 1no5A.118.12 read from T0506.t2k.many.frag # found chain 1no5A in training set T0506 118 :EVPLAIARY 1no5A 13 :ELAIVKTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21914 # 2bmoA.118.262 read from T0506.t2k.many.frag # found chain 2bmoA in template set T0506 118 :EVPLAIARY 2bmoA 263 :MIPDLMAFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=21915 # 1jfbA.118.163 read from T0506.t2k.many.frag # found chain 1jfbA in training set T0506 118 :EVPLAIARY 1jfbA 163 :DLEYLTQQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21916 # 1ryiA.118.286 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 118 :EVPLAIARY 1ryiA 274 :GLESVMKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21917 # 1dp4A.118.194 read from T0506.t2k.many.frag # found chain 1dp4A in template set T0506 118 :EVPLAIARY 1dp4A 195 :HYPKLLRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21918 # 1y1pA.118.46 read from T0506.t2k.many.frag # found chain 1y1pA in template set T0506 118 :EVPLAIARY 1y1pA 48 :KLANLQKRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=21919 # 1wvqA.118.30 read from T0506.t2k.many.frag # found chain 1wvqA in template set T0506 118 :EVPLAIARY 1wvqA 31 :TVEDLYEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21920 # 2f02A.118.114 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 118 :EVPLAIARY 2f02A 113 :EISNFLENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21921 # 1vgjA.118.52 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 118 :EVPLAIARY 1vgjA 53 :QAEEIKNIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21922 # 1tuwA.118.14 read from T0506.t2k.many.frag # found chain 1tuwA in template set T0506 118 :EVPLAIARY 1tuwA 15 :DAEHVAAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21923 # 1vfjA.118.11 read from T0506.t2k.many.frag # found chain 1vfjA in training set T0506 118 :EVPLAIARY 1vfjA 12 :KLNEVLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21924 # 1uzbA.118.74 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 118 :EVPLAIARY 1uzbA 75 :EAEAALEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21925 # 1rjdA.118.210 read from T0506.t2k.many.frag # found chain 1rjdA in training set T0506 118 :EVPLAIARY 1rjdA 211 :ESQLLINTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21926 # 1l6rA.118.122 read from T0506.t2k.many.frag # found chain 1l6rA in training set T0506 118 :EVPLAIARY 1l6rA 120 :DVDYVRKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21927 # 1y0hA.118.20 read from T0506.t2k.many.frag # found chain 1y0hA in training set T0506 118 :EVPLAIARY 1y0hA 18 :ARSALRALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21928 # 1ovnA.118.118 read from T0506.t2k.many.frag # found chain 1ovnA in template set Warning: unaligning (T0506)E118 (1ovnA)T128 because E (beta_S) conformation "forbidden" or filtered. T0506 119 :VPLAIARY 1ovnA 129 :LDNLKAFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=21929 # 1lqtA.118.401 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 118 :EVPLAIARY 1lqtA 402 :HADQVADWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21930 # 1xhnA.119.127 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 119 :VPLAIARYI 1xhnA 128 :MDIAKHSLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21931 # 1rqbA.119.285 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 119 :VPLAIARYI 1rqbA 275 :LHKIRDHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21932 # 2bbrA.119.111 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 119 :VPLAIARYI 2bbrA 112 :LRALRLFAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=21933 # 1u4bA.119.435 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 119 :VPLAIARYI 1u4bA 732 :AAEFIERYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=21934 # 1t82A.119.14 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 119 :VPLAIARYI 1t82A 5 :LNRLRQTWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21935 # 1zupA.119.254 read from T0506.t2k.many.frag # found chain 1zupA in template set T0506 119 :VPLAIARYI 1zupA 243 :IPYIRKVFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21936 # 1yreA.119.31 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 119 :VPLAIARYI 1yreA 30 :IPELVSLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21937 # 1ev7A.119.14 read from T0506.t2k.many.frag # found chain 1ev7A in template set T0506 119 :VPLAIARYI 1ev7A 15 :LERVRATLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21938 # 1pdo.119.40 read from T0506.t2k.many.frag # found chain 1pdo in training set T0506 119 :VPLAIARYI 1pdo 42 :AETLIEKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21939 # 1t4bA.119.287 read from T0506.t2k.many.frag # found chain 1t4bA in training set T0506 119 :VPLAIARYI 1t4bA 288 :IPTVEELLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21940 # 1y1pA.119.47 read from T0506.t2k.many.frag # found chain 1y1pA in template set Warning: unaligning (T0506)V119 (1y1pA)L49 because G (3-10) conformation "forbidden" or filtered. T0506 120 :PLAIARYI 1y1pA 50 :ANLQKRWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=21941 # 1no5A.119.13 read from T0506.t2k.many.frag # found chain 1no5A in training set T0506 119 :VPLAIARYI 1no5A 14 :LAIVKTILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21942 # 1b3tA.119.56 read from T0506.t2k.many.frag # found chain 1b3tA in template set T0506 119 :VPLAIARYI 1b3tA 517 :LYNLRRGTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21943 # 1wvqA.119.31 read from T0506.t2k.many.frag # found chain 1wvqA in template set T0506 119 :VPLAIARYI 1wvqA 32 :VEDLYEALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=21944 # 1zavA.119.37 read from T0506.t2k.many.frag # found chain 1zavA in template set T0506 119 :VPLAIARYI 1zavA 37 :LTELRSRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21945 # 1uj8A.119.18 read from T0506.t2k.many.frag # found chain 1uj8A in training set T0506 119 :VPLAIARYI 1uj8A 19 :SREIGEALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21946 # 1y0hA.119.21 read from T0506.t2k.many.frag # found chain 1y0hA in training set T0506 119 :VPLAIARYI 1y0hA 19 :RSALRALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21947 # 1i0vA.119.15 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 119 :VPLAIARYI 1i0vA 16 :VSTAQAAGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21948 # 1lqtA.119.402 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 119 :VPLAIARYI 1lqtA 403 :ADQVADWLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21949 # 1ryiA.119.287 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 119 :VPLAIARYI 1ryiA 275 :LESVMKKAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21950 # 2bmoA.119.263 read from T0506.t2k.many.frag # found chain 2bmoA in template set T0506 119 :VPLAIARYI 2bmoA 264 :IPDLMAFGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21951 # 1eyeA.119.149 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 119 :VPLAIARYI 1eyeA 150 :VAEVRADLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21952 # 1rjdA.119.211 read from T0506.t2k.many.frag # found chain 1rjdA in training set T0506 119 :VPLAIARYI 1rjdA 212 :SQLLINTIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=21953 # 1jl0A.119.129 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 119 :VPLAIARYI 1jl0A 130 :FQEEIEFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21954 # 1r6fA.119.45 read from T0506.t2k.many.frag # found chain 1r6fA in template set T0506 119 :VPLAIARYI 1r6fA 68 :IELLKKILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21955 # 1m15A.119.144 read from T0506.t2k.many.frag # found chain 1m15A in training set T0506 119 :VPLAIARYI 1m15A 145 :YKEMEEKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21956 # 1vgjA.119.53 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 119 :VPLAIARYI 1vgjA 54 :AEEIKNILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21957 # 1rqpA.119.23 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 119 :VPLAIARYI 1rqpA 24 :VAQCKGLMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=21958 # 2f02A.119.115 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 119 :VPLAIARYI 2f02A 114 :ISNFLENFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21959 # 1zx1A.119.200 read from T0506.t2k.many.frag # found chain 1zx1A in template set T0506 119 :VPLAIARYI 1zx1A 200 :RKGMVAAWS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21960 # 1xhnA.120.128 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 120 :PLAIARYIA 1xhnA 129 :DIAKHSLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21961 # 1rqbA.120.286 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 120 :PLAIARYIA 1rqbA 276 :HKIRDHFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21962 # 1u4bA.120.436 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 120 :PLAIARYIA 1u4bA 733 :AEFIERYFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21963 # 1t82A.120.15 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 120 :PLAIARYIA 1t82A 6 :NRLRQTWHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21964 # 1ev7A.120.15 read from T0506.t2k.many.frag # found chain 1ev7A in template set T0506 120 :PLAIARYIA 1ev7A 16 :ERVRATLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21965 # 2bbrA.120.112 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 120 :PLAIARYIA 2bbrA 113 :RALRLFACN Number of specific fragments extracted= 1 number of extra gaps= 0 total=21966 # 1t4bA.120.288 read from T0506.t2k.many.frag # found chain 1t4bA in training set T0506 120 :PLAIARYIA 1t4bA 289 :PTVEELLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21967 # 1wvqA.120.32 read from T0506.t2k.many.frag # found chain 1wvqA in template set T0506 120 :PLAIARYIA 1wvqA 33 :EDLYEALVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21968 # 1zavA.120.38 read from T0506.t2k.many.frag # found chain 1zavA in template set T0506 120 :PLAIARYIA 1zavA 38 :TELRSRLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21969 # 1y1pA.120.48 read from T0506.t2k.many.frag # found chain 1y1pA in template set T0506 120 :PLAIARYIA 1y1pA 50 :ANLQKRWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21970 # 1no5A.120.14 read from T0506.t2k.many.frag # found chain 1no5A in training set T0506 120 :PLAIARYIA 1no5A 15 :AIVKTILQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21971 # 1jl0A.120.130 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 120 :PLAIARYIA 1jl0A 131 :QEEIEFLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21972 # 1eyeA.120.150 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 120 :PLAIARYIA 1eyeA 151 :AEVRADLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21973 # 1uj8A.120.19 read from T0506.t2k.many.frag # found chain 1uj8A in training set T0506 120 :PLAIARYIA 1uj8A 20 :REIGEALYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21974 # 1pdo.120.41 read from T0506.t2k.many.frag # found chain 1pdo in training set T0506 120 :PLAIARYIA 1pdo 43 :ETLIEKYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21975 # 1rqpA.120.24 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 120 :PLAIARYIA 1rqpA 25 :AQCKGLMYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21976 # 1y0hA.120.22 read from T0506.t2k.many.frag # found chain 1y0hA in training set T0506 120 :PLAIARYIA 1y0hA 20 :SALRALLDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21977 # 1b3tA.120.57 read from T0506.t2k.many.frag # found chain 1b3tA in template set T0506 120 :PLAIARYIA 1b3tA 518 :YNLRRGTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21978 # 1tu9A.120.23 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 120 :PLAIARYIA 1tu9A 22 :DDFYRHFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21979 # 1i0vA.120.16 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 120 :PLAIARYIA 1i0vA 17 :STAQAAGYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21980 # 1zupA.120.255 read from T0506.t2k.many.frag # found chain 1zupA in template set T0506 120 :PLAIARYIA 1zupA 244 :PYIRKVFDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=21981 # 1hbnB.120.152 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)A128 (1hbnB)G162 because S (epsilon) conformation "forbidden" or filtered. T0506 120 :PLAIARYI 1hbnB 154 :NMVKAAVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=21982 # 1vl7A.120.115 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 120 :PLAIARYIA 1vl7A 104 :NQVVDQFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=21983 # 1lqtA.120.403 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 120 :PLAIARYIA 1lqtA 404 :DQVADWLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21984 # 1vgjA.120.54 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 120 :PLAIARYIA 1vgjA 55 :EEIKNILKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21985 # 1yreA.120.32 read from T0506.t2k.many.frag # found chain 1yreA in template set T0506 120 :PLAIARYIA 1yreA 31 :PELVSLAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21986 # 1jw9B.120.87 read from T0506.t2k.many.frag # found chain 1jw9B in training set T0506 120 :PLAIARYIA 1jw9B 88 :ESARDALTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21987 # 2f02A.120.116 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 120 :PLAIARYIA 2f02A 115 :SNFLENFDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21988 # 1zx1A.120.201 read from T0506.t2k.many.frag # found chain 1zx1A in template set T0506 120 :PLAIARYIA 1zx1A 201 :KGMVAAWSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=21989 # 1ryiA.120.288 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 120 :PLAIARYIA 1ryiA 276 :ESVMKKAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=21990 # 1xhnA.121.129 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 121 :LAIARYIAR 1xhnA 130 :IAKHSLFIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=21991 # 1u4bA.121.437 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 121 :LAIARYIAR 1u4bA 734 :EFIERYFES Number of specific fragments extracted= 1 number of extra gaps= 0 total=21992 # 1rqbA.121.287 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 121 :LAIARYIAR 1rqbA 277 :KIRDHFKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=21993 # 1t82A.121.16 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 121 :LAIARYIAR 1t82A 7 :RLRQTWHST Number of specific fragments extracted= 1 number of extra gaps= 0 total=21994 # 1ev7A.121.16 read from T0506.t2k.many.frag # found chain 1ev7A in template set T0506 121 :LAIARYIAR 1ev7A 17 :RVRATLYSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=21995 # 1y1pA.121.49 read from T0506.t2k.many.frag # found chain 1y1pA in template set T0506 121 :LAIARYIAR 1y1pA 51 :NLQKRWDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=21996 # 1t4bA.121.289 read from T0506.t2k.many.frag # found chain 1t4bA in training set T0506 121 :LAIARYIAR 1t4bA 290 :TVEELLAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=21997 # 1tu9A.121.24 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 121 :LAIARYIAR 1tu9A 23 :DFYRHFLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=21998 # 1uj8A.121.20 read from T0506.t2k.many.frag # found chain 1uj8A in training set T0506 121 :LAIARYIAR 1uj8A 21 :EIGEALYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=21999 # 1rqpA.121.25 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 121 :LAIARYIAR 1rqpA 26 :QCKGLMYSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22000 # 1jl0A.121.131 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 121 :LAIARYIAR 1jl0A 132 :EEIEFLNAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22001 # 1eyeA.121.151 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 121 :LAIARYIAR 1eyeA 152 :EVRADLLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22002 1hl9A expands to /projects/compbio/data/pdb/1hl9.pdb.gz 1hl9A:Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms # 1hl9A.121.236 read from T0506.t2k.many.frag # adding 1hl9A to template set # found chain 1hl9A in template set T0506 121 :LAIARYIAR 1hl9A 237 :YLFAYYYNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22003 # 1vl7A.121.116 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 121 :LAIARYIAR 1vl7A 105 :QVVDQFQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=22004 # 1wvqA.121.33 read from T0506.t2k.many.frag # found chain 1wvqA in template set T0506 121 :LAIARYIAR 1wvqA 34 :DLYEALVTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22005 # 1pdo.121.42 read from T0506.t2k.many.frag # found chain 1pdo in training set T0506 121 :LAIARYIAR 1pdo 44 :TLIEKYNAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22006 # 1no5A.121.15 read from T0506.t2k.many.frag # found chain 1no5A in training set T0506 121 :LAIARYIAR 1no5A 16 :IVKTILQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22007 # 1lqtA.121.404 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 121 :LAIARYIAR 1lqtA 405 :QVADWLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22008 # 1i0vA.121.17 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 121 :LAIARYIAR 1i0vA 18 :TAQAAGYKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22009 # 1zavA.121.39 read from T0506.t2k.many.frag # found chain 1zavA in template set T0506 121 :LAIARYIAR 1zavA 39 :ELRSRLREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22010 # 1y0hA.121.23 read from T0506.t2k.many.frag # found chain 1y0hA in training set T0506 121 :LAIARYIAR 1y0hA 21 :ALRALLDAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22011 # 1rjdA.121.213 read from T0506.t2k.many.frag # found chain 1rjdA in training set T0506 121 :LAIARYIAR 1rjdA 214 :LLINTIMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22012 # 1hbnB.121.153 read from T0506.t2k.many.frag # found chain 1hbnB in training set T0506 121 :LAIARYIAR 1hbnB 155 :MVKAAVLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22013 # 2bbrA.121.113 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 121 :LAIARYIAR 2bbrA 114 :ALRLFACNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22014 1ei9A expands to /projects/compbio/data/pdb/1ei9.pdb.gz 1ei9A:# 1ei9A.121.25 read from T0506.t2k.many.frag # adding 1ei9A to template set # found chain 1ei9A in template set T0506 121 :LAIARYIAR 1ei9A 53 :AIKKMVEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22015 # 1jw9B.121.88 read from T0506.t2k.many.frag # found chain 1jw9B in training set T0506 121 :LAIARYIAR 1jw9B 89 :SARDALTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22016 # 1zx1A.121.202 read from T0506.t2k.many.frag # found chain 1zx1A in template set T0506 121 :LAIARYIAR 1zx1A 202 :GMVAAWSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22017 # 1v6sA.121.71 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 121 :LAIARYIAR 1v6sA 72 :PVGEALRAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22018 1q9jA expands to /projects/compbio/data/pdb/1q9j.pdb.gz 1q9jA:# 1q9jA.121.40 read from T0506.t2k.many.frag # adding 1q9jA to template set # found chain 1q9jA in template set T0506 121 :LAIARYIAR 1q9jA 41 :DAFDALLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=22019 # 1pg4A.121.482 read from T0506.t2k.many.frag # found chain 1pg4A in training set Warning: unaligning (T0506)I127 (1pg4A)F489 because G (3-10) conformation "forbidden" or filtered. T0506 121 :LAIARY 1pg4A 483 :RFEQTY T0506 128 :AR 1pg4A 490 :ST Number of specific fragments extracted= 2 number of extra gaps= 1 total=22021 # 1xhnA.122.130 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 122 :AIARYIARY 1xhnA 131 :AKHSLFIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22022 # 1u4bA.122.438 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 122 :AIARYIARY 1u4bA 735 :FIERYFESF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22023 # 1rqbA.122.288 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 122 :AIARYIARY 1rqbA 278 :IRDHFKAIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22024 # 1hl9A.122.237 read from T0506.t2k.many.frag # found chain 1hl9A in template set T0506 122 :AIARYIARY 1hl9A 238 :LFAYYYNKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22025 # 1t82A.122.17 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 122 :AIARYIARY 1t82A 8 :LRQTWHSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22026 # 1tu9A.122.25 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 122 :AIARYIARY 1tu9A 24 :FYRHFLASS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22027 # 1y1pA.122.50 read from T0506.t2k.many.frag # found chain 1y1pA in template set T0506 122 :AIARYIARY 1y1pA 52 :LQKRWDAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22028 # 1wvqA.122.34 read from T0506.t2k.many.frag # found chain 1wvqA in template set T0506 122 :AIARYIARY 1wvqA 35 :LYEALVTSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22029 # 1hbnB.122.154 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)Y130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnB)P165 T0506 122 :AIARYIAR 1hbnB 156 :VKAAVLGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22030 # 1uj8A.122.21 read from T0506.t2k.many.frag # found chain 1uj8A in training set T0506 122 :AIARYIARY 1uj8A 22 :IGEALYDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22031 # 1d0cA.122.136 read from T0506.t2k.many.frag # found chain 1d0cA in training set T0506 122 :AIARYIARY 1d0cA 175 :GAKQAWRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22032 # 1ev7A.122.17 read from T0506.t2k.many.frag # found chain 1ev7A in template set T0506 122 :AIARYIARY 1ev7A 18 :VRATLYSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22033 # 1eyeA.122.152 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 122 :AIARYIARY 1eyeA 153 :VRADLLASV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22034 # 1vl7A.122.117 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 122 :AIARYIARY 1vl7A 106 :VVDQFQERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22035 # 1jl0A.122.132 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 122 :AIARYIARY 1jl0A 133 :EIEFLNAIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22036 # 1rqpA.122.26 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 122 :AIARYIARY 1rqpA 27 :CKGLMYSIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22037 # 1pg4A.122.483 read from T0506.t2k.many.frag # found chain 1pg4A in training set T0506 122 :AIARYIARY 1pg4A 484 :FEQTYFSTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22038 # 2bbrA.122.114 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 122 :AIARYIARY 2bbrA 115 :LRLFACNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22039 # 1pdo.122.43 read from T0506.t2k.many.frag # found chain 1pdo in training set T0506 122 :AIARYIARY 1pdo 45 :LIEKYNAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22040 # 1q9jA.122.41 read from T0506.t2k.many.frag # found chain 1q9jA in template set T0506 122 :AIARYIARY 1q9jA 42 :AFDALLETH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22041 # 1jw9B.122.89 read from T0506.t2k.many.frag # found chain 1jw9B in training set T0506 122 :AIARYIARY 1jw9B 90 :ARDALTRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22042 # 1v6sA.122.72 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 122 :AIARYIARY 1v6sA 73 :VGEALRAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22043 2fcjA expands to /projects/compbio/data/pdb/2fcj.pdb.gz 2fcjA:Skipped atom 2, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 4, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 6, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 8, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 10, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 14, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 48, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 52, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 54, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 56, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 58, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 60, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 700, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 938, because occupancy 0.500 <= existing 0.500 in 2fcjA Skipped atom 940, because occupancy 0.500 <= existing 0.500 in 2fcjA # 2fcjA.122.65 read from T0506.t2k.many.frag # adding 2fcjA to template set # found chain 2fcjA in template set T0506 122 :AIARYIARY 2fcjA 66 :LRRQFRRMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22044 # 1t4bA.122.290 read from T0506.t2k.many.frag # found chain 1t4bA in training set T0506 122 :AIARYIARY 1t4bA 291 :VEELLAAHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22045 # 1rjdA.122.214 read from T0506.t2k.many.frag # found chain 1rjdA in training set T0506 122 :AIARYIARY 1rjdA 215 :LINTIMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22046 # 1no5A.122.16 read from T0506.t2k.many.frag # found chain 1no5A in training set T0506 122 :AIARYIARY 1no5A 17 :VKTILQQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22047 # 1i0vA.122.18 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 122 :AIARYIARY 1i0vA 19 :AQAAGYKLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22048 # 1ei9A.122.26 read from T0506.t2k.many.frag # found chain 1ei9A in template set T0506 122 :AIARYIARY 1ei9A 54 :IKKMVEKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22049 # 1lqtA.122.405 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 122 :AIARYIARY 1lqtA 406 :VADWLAARQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22050 1wn5A expands to /projects/compbio/data/pdb/1wn5.pdb.gz 1wn5A:# 1wn5A.122.90 read from T0506.t2k.many.frag # adding 1wn5A to template set # found chain 1wn5A in template set T0506 122 :AIARYIARY 1wn5A 91 :CRQVLLDLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22051 # 1xhnA.123.131 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 123 :IARYIARYP 1xhnA 132 :KHSLFIRHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22052 # 1u4bA.123.439 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 123 :IARYIARYP 1u4bA 736 :IERYFESFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22053 # 1hl9A.123.238 read from T0506.t2k.many.frag # found chain 1hl9A in template set T0506 123 :IARYIARYP 1hl9A 239 :FAYYYNKHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22054 # 1t82A.123.18 read from T0506.t2k.many.frag # found chain 1t82A in training set Warning: unaligning (T0506)R129 (1t82A)T15 because G (3-10) conformation "forbidden" or filtered. T0506 123 :IARYIA 1t82A 9 :RQTWHS T0506 130 :YP 1t82A 16 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22056 # 1hbnB.123.155 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)A128 (1hbnB)G162 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnB)P165 Warning: unaligning (T0506)P131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnB)P165 T0506 123 :IARYI 1hbnB 157 :KAAVL T0506 129 :R 1hbnB 163 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=22058 # 1rqbA.123.289 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 123 :IARYIARYP 1rqbA 279 :RDHFKAIRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22059 # 1tu9A.123.26 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 123 :IARYIARYP 1tu9A 25 :YRHFLASSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22060 # 1y1pA.123.51 read from T0506.t2k.many.frag # found chain 1y1pA in template set T0506 123 :IARYIARYP 1y1pA 53 :QKRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22061 # 1wvqA.123.35 read from T0506.t2k.many.frag # found chain 1wvqA in template set T0506 123 :IARYIARYP 1wvqA 36 :YEALVTSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22062 # 1d0cA.123.137 read from T0506.t2k.many.frag # found chain 1d0cA in training set T0506 123 :IARYIARYP 1d0cA 176 :AKQAWRNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22063 # 1jl0A.123.133 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 123 :IARYIARYP 1jl0A 134 :IEFLNAIFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22064 # 1t4bA.123.291 read from T0506.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0506)Y130 (1t4bA)N299 because Y (epsilon') conformation "forbidden" or filtered. T0506 123 :IARYIAR 1t4bA 292 :EELLAAH T0506 131 :P 1t4bA 300 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=22066 # 1rqpA.123.27 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 123 :IARYIARYP 1rqpA 28 :KGLMYSICP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22067 # 1lqtA.123.406 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 123 :IARYIARYP 1lqtA 407 :ADWLAARQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22068 # 1uj8A.123.22 read from T0506.t2k.many.frag # found chain 1uj8A in training set Warning: unaligning (T0506)Y130 (1uj8A)Y30 because D (zeta) conformation "forbidden" or filtered. T0506 123 :IARYIAR 1uj8A 23 :GEALYDA T0506 131 :P 1uj8A 31 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=22070 # 1v6sA.123.73 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 123 :IARYIARYP 1v6sA 74 :GEALRAHLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22071 # 2bbrA.123.115 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 123 :IARYIARYP 2bbrA 116 :RLFACNLNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22072 # 1ei9A.123.27 read from T0506.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0506)R129 (1ei9A)K61 because G (3-10) conformation "forbidden" or filtered. T0506 123 :IARYIA 1ei9A 55 :KKMVEK T0506 130 :YP 1ei9A 62 :IP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22074 # 1eyeA.123.153 read from T0506.t2k.many.frag # found chain 1eyeA in training set T0506 123 :IARYIARYP 1eyeA 154 :RADLLASVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22075 # 1vl7A.123.118 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 123 :IARYIARYP 1vl7A 107 :VDQFQERFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22076 # 2fcjA.123.66 read from T0506.t2k.many.frag # found chain 2fcjA in template set T0506 123 :IARYIARYP 2fcjA 67 :RRQFRRMFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22077 # 1ev7A.123.18 read from T0506.t2k.many.frag # found chain 1ev7A in template set T0506 123 :IARYIARYP 1ev7A 19 :RATLYSLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22078 # 1jw9B.123.90 read from T0506.t2k.many.frag # found chain 1jw9B in training set T0506 123 :IARYIARYP 1jw9B 91 :RDALTRINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22079 # 1wn5A.123.91 read from T0506.t2k.many.frag # found chain 1wn5A in template set T0506 123 :IARYIARYP 1wn5A 92 :RQVLLDLHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22080 1w5qA expands to /projects/compbio/data/pdb/1w5q.pdb.gz 1w5qA:Skipped atom 260, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 262, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 264, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 266, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 268, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 270, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 272, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 327, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 479, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 481, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 483, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 485, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 487, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 489, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 491, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 493, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 495, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 497, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 499, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 578, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 580, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 582, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 584, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 586, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 588, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 738, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 742, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 744, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 881, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 883, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 885, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 887, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 889, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 891, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 893, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 895, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 897, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 899, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 901, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 915, because occupancy 0.750 <= existing 0.750 in 1w5qA Skipped atom 917, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 919, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 921, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 923, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 925, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 927, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 929, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 931, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 933, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 935, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1129, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1131, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1133, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1135, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1139, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1272, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1274, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1276, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1278, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1280, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1282, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1284, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1286, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1310, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1312, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1314, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1316, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1318, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1320, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1322, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1324, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1326, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1328, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1330, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1375, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1377, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1379, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1381, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1383, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1385, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1387, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1389, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1391, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1531, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1533, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1535, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1537, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1539, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1541, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1543, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1545, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1547, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1571, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1573, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1575, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1577, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1579, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1581, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1992, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1994, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1996, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1998, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2000, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2002, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2004, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2006, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2015, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2017, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2019, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2021, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2023, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2025, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2027, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2029, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2058, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2060, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2062, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2064, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2066, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2068, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2070, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2072, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2124, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2126, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2128, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2130, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2132, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2134, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2136, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2138, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2140, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2142, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2144, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2181, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2183, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2185, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2187, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2189, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2191, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2193, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2195, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2197, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2210, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2212, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2214, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2216, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2218, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2220, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2222, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2224, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2226, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2228, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2230, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2333, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2335, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2337, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2339, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2341, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2343, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2345, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2347, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2359, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2361, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2363, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2365, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2367, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2369, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2371, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2373, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2470, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2472, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2474, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2476, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2478, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2480, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2482, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2484, because occupancy 0.400 <= existing 0.600 in 1w5qA # 1w5qA.123.111 read from T0506.t2k.many.frag # adding 1w5qA to template set # found chain 1w5qA in template set T0506 123 :IARYIARYP 1w5qA 112 :TRALRERFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22081 # 1c93A.123.147 read from T0506.t2k.many.frag # found chain 1c93A in template set T0506 123 :IARYIARYP 1c93A 153 :VTALRANMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22082 # 1zx1A.123.204 read from T0506.t2k.many.frag # found chain 1zx1A in template set T0506 123 :IARYIARYP 1zx1A 204 :VAAWSQRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22083 2bk9A expands to /projects/compbio/data/pdb/2bk9.pdb.gz 2bk9A:Skipped atom 45, because occupancy 0.350 <= existing 0.650 in 2bk9A Skipped atom 46, because occupancy 0.350 <= existing 0.650 in 2bk9A Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 130, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 162, because occupancy 0.350 <= existing 0.650 in 2bk9A Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 455, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 457, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 654, because occupancy 0.300 <= existing 0.700 in 2bk9A Skipped atom 655, because occupancy 0.300 <= existing 0.700 in 2bk9A Skipped atom 656, because occupancy 0.300 <= existing 0.700 in 2bk9A Skipped atom 657, because occupancy 0.300 <= existing 0.700 in 2bk9A Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 1004, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 1006, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 1007, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 1008, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 2081, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 2082, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 2083, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 2084, because occupancy 0.500 <= existing 0.500 in 2bk9A Skipped atom 2085, because occupancy 0.500 <= existing 0.500 in 2bk9A # 2bk9A.123.27 read from T0506.t2k.many.frag # adding 2bk9A to template set # found chain 2bk9A in template set T0506 123 :IARYIARYP 2bk9A 28 :LTQFFNRFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22084 # 1g66A.123.25 read from T0506.t2k.many.frag # found chain 1g66A in training set T0506 123 :IARYIARYP 1g66A 26 :VNGVLSAYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22085 # 1pg4A.123.484 read from T0506.t2k.many.frag # found chain 1pg4A in training set T0506 123 :IARYIARYP 1pg4A 485 :EQTYFSTFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22086 # 1hl9A.124.239 read from T0506.t2k.many.frag # found chain 1hl9A in template set T0506 124 :ARYIARYPK 1hl9A 240 :AYYYNKHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22087 # 1u4bA.124.440 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 124 :ARYIARYPK 1u4bA 737 :ERYFESFPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22088 # 1xhnA.124.132 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 124 :ARYIARYPK 1xhnA 133 :HSLFIRHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22089 # 1lqtA.124.407 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 124 :ARYIARYPK 1lqtA 408 :DWLAARQPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22090 # 1tu9A.124.27 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 124 :ARYIARYPK 1tu9A 26 :RHFLASSPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22091 # 1hbnB.124.156 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)Y130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnB)P165 Warning: unaligning (T0506)P131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnB)P165 T0506 124 :ARYIAR 1hbnB 158 :AAVLGR T0506 132 :K 1hbnB 166 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=22093 # 1d0cA.124.138 read from T0506.t2k.many.frag # found chain 1d0cA in training set T0506 124 :ARYIARYPK 1d0cA 177 :KQAWRNAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22094 # 1y1pA.124.52 read from T0506.t2k.many.frag # found chain 1y1pA in template set Warning: unaligning (T0506)K132 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0506 124 :ARYIARYP 1y1pA 54 :KRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=22095 # 2bk9A.124.28 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 124 :ARYIARYPK 2bk9A 29 :TQFFNRFPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22096 # 1t4bA.124.292 read from T0506.t2k.many.frag # found chain 1t4bA in training set T0506 124 :ARYIARYPK 1t4bA 293 :ELLAAHNPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22097 # 1t82A.124.19 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 124 :ARYIARYPK 1t82A 10 :QTWHSTIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22098 # 1ei9A.124.28 read from T0506.t2k.many.frag # found chain 1ei9A in template set T0506 124 :ARYIARYPK 1ei9A 56 :KMVEKKIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22099 # 1jl0A.124.134 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 124 :ARYIARYPK 1jl0A 135 :EFLNAIFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22100 # 2bbrA.124.116 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 124 :ARYIARYPK 2bbrA 117 :LFACNLNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22101 # 1w5qA.124.112 read from T0506.t2k.many.frag # found chain 1w5qA in template set T0506 124 :ARYIARYPK 1w5qA 113 :RALRERFPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22102 # 1rqbA.124.290 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 124 :ARYIARYPK 1rqbA 280 :DHFKAIRPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22103 # 1rqpA.124.28 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 124 :ARYIARYPK 1rqpA 29 :GLMYSICPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22104 # 1vhvA.124.186 read from T0506.t2k.many.frag # found chain 1vhvA in training set T0506 124 :ARYIARYPK 1vhvA 174 :ENLIAEDAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22105 # 1v6sA.124.74 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 124 :ARYIARYPK 1v6sA 75 :EALRAHLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22106 # 1g66A.124.26 read from T0506.t2k.many.frag # found chain 1g66A in training set T0506 124 :ARYIARYPK 1g66A 27 :NGVLSAYPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22107 # 1wvqA.124.36 read from T0506.t2k.many.frag # found chain 1wvqA in template set T0506 124 :ARYIARYPK 1wvqA 37 :EALVTSVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22108 2bh4X expands to /projects/compbio/data/pdb/2bh4.pdb.gz 2bh4X:Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 285, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 287, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 505, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 507, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 729, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 733, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 735, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 743, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 745, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 791, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 793, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 797, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 799, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 801, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 878, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 2bh4X Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2bh4X # 2bh4X.124.112 read from T0506.t2k.many.frag # adding 2bh4X to template set # found chain 2bh4X in template set T0506 124 :ARYIARYPK 2bh4X 113 :AFLAQHSPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22109 # 1uj8A.124.23 read from T0506.t2k.many.frag # found chain 1uj8A in training set T0506 124 :ARYIARYPK 1uj8A 24 :EALYDAYPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22110 # 1vqoM.124.103 read from T0506.t2k.many.frag # found chain 1vqoM in template set T0506 124 :ARYIARYPK 1vqoM 103 :ERASRTFPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22111 # 1wn5A.124.92 read from T0506.t2k.many.frag # found chain 1wn5A in template set T0506 124 :ARYIARYPK 1wn5A 93 :QVLLDLHPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22112 2f5uA expands to /projects/compbio/data/pdb/2f5u.pdb.gz 2f5uA:# 2f5uA.124.50 read from T0506.t2k.many.frag # adding 2f5uA to template set # found chain 2f5uA in template set T0506 124 :ARYIARYPK 2f5uA 184 :DRTITDFPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22113 # 1q9jA.124.43 read from T0506.t2k.many.frag # found chain 1q9jA in template set T0506 124 :ARYIARYPK 1q9jA 44 :DALLETHPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22114 # 1h6fA.124.172 read from T0506.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0506)R129 (1h6fA)N276 because G (3-10) conformation "forbidden" or filtered. T0506 124 :ARYIA 1h6fA 271 :QLKID T0506 130 :YPK 1h6fA 277 :NPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22116 # 1jw9B.124.91 read from T0506.t2k.many.frag # found chain 1jw9B in training set T0506 124 :ARYIARYPK 1jw9B 92 :DALTRINPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22117 1u8bA expands to /projects/compbio/data/pdb/1u8b.pdb.gz 1u8bA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: CS for alphabet: pdb_atoms Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u8bA.124.7 read from T0506.t2k.many.frag # adding 1u8bA to template set # found chain 1u8bA in template set T0506 124 :ARYIARYPK 1u8bA 14 :QSVLARDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22118 # 1xhnA.125.133 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 125 :RYIARYPKA 1xhnA 134 :SLFIRHPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22119 # 2f5uA.125.51 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 125 :RYIARYPKA 2f5uA 185 :RTITDFPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22120 # 1u4bA.125.441 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 125 :RYIARYPKA 1u4bA 738 :RYFESFPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22121 # 1hl9A.125.240 read from T0506.t2k.many.frag # found chain 1hl9A in template set T0506 125 :RYIARYPKA 1hl9A 241 :YYYNKHPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22122 # 1t82A.125.20 read from T0506.t2k.many.frag # found chain 1t82A in training set T0506 125 :RYIARYPKA 1t82A 11 :TWHSTIPVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22123 # 1v6sA.125.75 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 125 :RYIARYPKA 1v6sA 76 :ALRAHLPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22124 # 1w5qA.125.113 read from T0506.t2k.many.frag # found chain 1w5qA in template set T0506 125 :RYIARYPKA 1w5qA 114 :ALRERFPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22125 # 1g66A.125.27 read from T0506.t2k.many.frag # found chain 1g66A in training set T0506 125 :RYIARYPKA 1g66A 28 :GVLSAYPGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22126 # 1h6fA.125.173 read from T0506.t2k.many.frag # found chain 1h6fA in training set T0506 125 :RYIARYPKA 1h6fA 272 :LKIDNNPFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22127 # 1ei9A.125.29 read from T0506.t2k.many.frag # found chain 1ei9A in template set T0506 125 :RYIARYPKA 1ei9A 57 :MVEKKIPGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22128 # 1wn5A.125.93 read from T0506.t2k.many.frag # found chain 1wn5A in template set T0506 125 :RYIARYPKA 1wn5A 94 :VLLDLHPGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22129 # 1tu9A.125.28 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 125 :RYIARYPKA 1tu9A 27 :HFLASSPQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22130 # 1lqtA.125.408 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 125 :RYIARYPKA 1lqtA 409 :WLAARQPKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22131 # 1ryiA.125.293 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 125 :RYIARYPKA 1ryiA 281 :KAKTMLPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22132 # 1vqoM.125.104 read from T0506.t2k.many.frag # found chain 1vqoM in template set T0506 125 :RYIARYPKA 1vqoM 104 :RASRTFPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22133 # 2bk9A.125.29 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 125 :RYIARYPKA 2bk9A 30 :QFFNRFPSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22134 # 1jl0A.125.135 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 125 :RYIARYPKA 1jl0A 136 :FLNAIFPNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22135 # 1ew6A.125.22 read from T0506.t2k.many.frag # found chain 1ew6A in training set T0506 125 :RYIARYPKA 1ew6A 23 :AFLNKYPDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22136 # 1rqpA.125.29 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 125 :RYIARYPKA 1rqpA 30 :LMYSICPDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22137 # 2bbrA.125.117 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 125 :RYIARYPKA 2bbrA 118 :FACNLNPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22138 # 1t4bA.125.293 read from T0506.t2k.many.frag # found chain 1t4bA in training set T0506 125 :RYIARYPKA 1t4bA 294 :LLAAHNPWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22139 # 2fcjA.125.68 read from T0506.t2k.many.frag # found chain 2fcjA in template set T0506 125 :RYIARYPKA 2fcjA 69 :QFRRMFPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22140 # 1vhvA.125.187 read from T0506.t2k.many.frag # found chain 1vhvA in training set T0506 125 :RYIARYPKA 1vhvA 175 :NLIAEDAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22141 # 1y1pA.125.53 read from T0506.t2k.many.frag # found chain 1y1pA in template set T0506 125 :RYIARYPKA 1y1pA 55 :RWDAKYPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22142 # 1uj8A.125.24 read from T0506.t2k.many.frag # found chain 1uj8A in training set T0506 125 :RYIARYPKA 1uj8A 25 :ALYDAYPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22143 # 1ro7A.125.93 read from T0506.t2k.many.frag # found chain 1ro7A in training set T0506 125 :RYIARYPKA 1ro7A 94 :TFYDYFPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22144 # 1xttA.125.87 read from T0506.t2k.many.frag # found chain 1xttA in training set Warning: unaligning (T0506)A133 (1xttA)A96 because P (beta_P) conformation "forbidden" or filtered. T0506 125 :RYIARYPK 1xttA 88 :GLLKAFPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22145 # 2bh4X.125.113 read from T0506.t2k.many.frag # found chain 2bh4X in template set Warning: unaligning (T0506)K132 (2bh4X)D121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A133 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bh4X)G123 T0506 125 :RYIARYP 2bh4X 114 :FLAQHSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=22146 # 1hbnB.125.157 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)Y130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnB)P165 Warning: unaligning (T0506)P131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnB)P165 T0506 125 :RYIAR 1hbnB 159 :AVLGR T0506 132 :KA 1hbnB 166 :QS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22148 # 1i1wA.125.158 read from T0506.t2k.many.frag # found chain 1i1wA in training set T0506 125 :RYIARYPKA 1i1wA 159 :TARAADPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22149 # 1xhnA.126.134 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 126 :YIARYPKAK 1xhnA 135 :LFIRHPEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22150 # 2f5uA.126.52 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 126 :YIARYPKAK 2f5uA 186 :TITDFPLTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22151 # 2bbrA.126.118 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 126 :YIARYPKAK 2bbrA 119 :ACNLNPSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22152 # 1u4bA.126.442 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 126 :YIARYPKAK 1u4bA 739 :YFESFPGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22153 # 1hl9A.126.241 read from T0506.t2k.many.frag # found chain 1hl9A in template set T0506 126 :YIARYPKAK 1hl9A 242 :YYNKHPEGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22154 # 1wn5A.126.94 read from T0506.t2k.many.frag # found chain 1wn5A in template set T0506 126 :YIARYPKAK 1wn5A 95 :LLDLHPGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22155 # 1v6sA.126.76 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 126 :YIARYPKAK 1v6sA 77 :LRAHLPEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22156 # 1ew6A.126.23 read from T0506.t2k.many.frag # found chain 1ew6A in training set Warning: unaligning (T0506)Y130 (1ew6A)Y28 because D (zeta) conformation "forbidden" or filtered. T0506 126 :YIAR 1ew6A 24 :FLNK T0506 131 :PKAK 1ew6A 29 :PDER Number of specific fragments extracted= 2 number of extra gaps= 1 total=22158 # 1ryiA.126.294 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 126 :YIARYPKAK 1ryiA 282 :AKTMLPAIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22159 # 1h6fA.126.174 read from T0506.t2k.many.frag # found chain 1h6fA in training set T0506 126 :YIARYPKAK 1h6fA 273 :KIDNNPFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22160 # 1g66A.126.28 read from T0506.t2k.many.frag # found chain 1g66A in training set T0506 126 :YIARYPKAK 1g66A 29 :VLSAYPGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=22161 # 1rqbA.126.292 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 126 :YIARYPKAK 1rqbA 282 :FKAIRPKYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22162 # 1w5qA.126.114 read from T0506.t2k.many.frag # found chain 1w5qA in template set Warning: unaligning (T0506)K134 (1w5qA)G123 because P (beta_P) conformation "forbidden" or filtered. T0506 126 :YIARYPKA 1w5qA 115 :LRERFPEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22163 # 2fcjA.126.69 read from T0506.t2k.many.frag # found chain 2fcjA in template set T0506 126 :YIARYPKAK 2fcjA 70 :FRRMFPEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22164 # 2bk9A.126.30 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 126 :YIARYPKAK 2bk9A 31 :FFNRFPSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22165 # 1ei9A.126.30 read from T0506.t2k.many.frag # found chain 1ei9A in template set T0506 126 :YIARYPKAK 1ei9A 58 :VEKKIPGIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22166 # 1ro7A.126.94 read from T0506.t2k.many.frag # found chain 1ro7A in training set T0506 126 :YIARYPKAK 1ro7A 95 :FYDYFPDAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22167 # 1xttA.126.88 read from T0506.t2k.many.frag # found chain 1xttA in training set Warning: unaligning (T0506)A133 (1xttA)A96 because P (beta_P) conformation "forbidden" or filtered. T0506 126 :YIARYPK 1xttA 89 :LLKAFPK T0506 134 :K 1xttA 97 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=22169 1dqaA expands to /projects/compbio/data/pdb/1dqa.pdb.gz 1dqaA:# 1dqaA.126.249 read from T0506.t2k.many.frag # adding 1dqaA to template set # found chain 1dqaA in template set T0506 126 :YIARYPKAK 1dqaA 671 :LHEYFPEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22170 # 2bh4X.126.114 read from T0506.t2k.many.frag # found chain 2bh4X in template set Warning: unaligning (T0506)A133 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bh4X)G123 Warning: unaligning (T0506)K134 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bh4X)G123 T0506 126 :YIARYPK 2bh4X 115 :LAQHSPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22171 # 1tu9A.126.29 read from T0506.t2k.many.frag # found chain 1tu9A in training set Warning: unaligning (T0506)Y130 (1tu9A)S32 because Y (epsilon') conformation "forbidden" or filtered. T0506 126 :YIAR 1tu9A 28 :FLAS T0506 131 :PKAK 1tu9A 33 :PQIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22173 # 1t4bA.126.294 read from T0506.t2k.many.frag # found chain 1t4bA in training set Warning: unaligning (T0506)Y130 (1t4bA)N299 because Y (epsilon') conformation "forbidden" or filtered. T0506 126 :YIAR 1t4bA 295 :LAAH T0506 131 :PKAK 1t4bA 300 :PWAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22175 # 1i1wA.126.159 read from T0506.t2k.many.frag # found chain 1i1wA in training set T0506 126 :YIARYPKAK 1i1wA 160 :ARAADPNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22176 # 1kr7A.126.14 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 126 :YIARYPKAK 1kr7A 14 :LFKAHPEYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22177 # 1rqpA.126.30 read from T0506.t2k.many.frag # found chain 1rqpA in training set T0506 126 :YIARYPKAK 1rqpA 31 :MYSICPDVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22178 # 1o7jA.126.38 read from T0506.t2k.many.frag # found chain 1o7jA in training set T0506 126 :YIARYPKAK 1o7jA 39 :LINAVPEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22179 # 1hbnB.126.158 read from T0506.t2k.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)Y130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnB)P165 Warning: unaligning (T0506)P131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnB)P165 T0506 126 :YIAR 1hbnB 160 :VLGR T0506 132 :KAK 1hbnB 166 :QSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22181 # 1jl0A.126.136 read from T0506.t2k.many.frag # found chain 1jl0A in training set T0506 126 :YIARYPKAK 1jl0A 137 :LNAIFPNGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22182 1nekA expands to /projects/compbio/data/pdb/1nek.pdb.gz 1nekA:# 1nekA.126.272 read from T0506.t2k.many.frag # adding 1nekA to template set # found chain 1nekA in template set Warning: unaligning (T0506)K134 (1nekA)K281 because S (epsilon) conformation "forbidden" or filtered. T0506 126 :YIARYPKA 1nekA 273 :MERYAPNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=22183 1xk5A expands to /projects/compbio/data/pdb/1xk5.pdb.gz 1xk5A:# 1xk5A.126.111 read from T0506.t2k.many.frag # adding 1xk5A to template set # found chain 1xk5A in template set Warning: unaligning (T0506)A128 (1xk5A)S210 because G (3-10) conformation "forbidden" or filtered. T0506 126 :YI 1xk5A 208 :MH T0506 129 :RYPKAK 1xk5A 211 :KLPEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22185 # 1xhnA.127.135 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 127 :IARYPKAKL 1xhnA 136 :FIRHPEMKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22186 # 2f5uA.127.53 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 127 :IARYPKAKL 2f5uA 187 :ITDFPLTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22187 # 2bk9A.127.31 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 127 :IARYPKAKL 2bk9A 32 :FNRFPSNLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22188 # 1hl9A.127.242 read from T0506.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0506)K134 (1hl9A)S250 because Y (epsilon') conformation "forbidden" or filtered. T0506 127 :IARYPKA 1hl9A 243 :YNKHPEG T0506 135 :L 1hl9A 251 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22190 # 1ew6A.127.24 read from T0506.t2k.many.frag # found chain 1ew6A in training set T0506 127 :IARYPKAKL 1ew6A 25 :LNKYPDERR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22191 # 2bbrA.127.119 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 127 :IARYPKAKL 2bbrA 120 :CNLNPSLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=22192 # 1ryiA.127.295 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 127 :IARYPKAKL 1ryiA 283 :KTMLPAIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22193 # 1u4bA.127.443 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 127 :IARYPKAKL 1u4bA 740 :FESFPGVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22194 # 1wn5A.127.95 read from T0506.t2k.many.frag # found chain 1wn5A in template set T0506 127 :IARYPKAKL 1wn5A 96 :LDLHPGIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22195 # 1h6fA.127.175 read from T0506.t2k.many.frag # found chain 1h6fA in training set T0506 127 :IARYPKAKL 1h6fA 274 :IDNNPFAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22196 # 1v6sA.127.77 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 127 :IARYPKAKL 1v6sA 78 :RAHLPEARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22197 # 1dqaA.127.250 read from T0506.t2k.many.frag # found chain 1dqaA in template set Warning: unaligning (T0506)K134 (1dqaA)Q679 because E (beta_S) conformation "forbidden" or filtered. T0506 127 :IARYPKA 1dqaA 672 :HEYFPEM T0506 135 :L 1dqaA 680 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=22199 # 1o7jA.127.39 read from T0506.t2k.many.frag # found chain 1o7jA in training set T0506 127 :IARYPKAKL 1o7jA 40 :INAVPEVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22200 # 2fcjA.127.70 read from T0506.t2k.many.frag # found chain 2fcjA in template set T0506 127 :IARYPKAKL 2fcjA 71 :RRMFPEAEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22201 # 1rv9A.127.183 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 127 :IARYPKAKL 1rv9A 184 :CTPMPEAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22202 # 1w5qA.127.115 read from T0506.t2k.many.frag # found chain 1w5qA in template set Warning: unaligning (T0506)K134 (1w5qA)G123 because P (beta_P) conformation "forbidden" or filtered. T0506 127 :IARYPKA 1w5qA 116 :RERFPEL T0506 135 :L 1w5qA 124 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=22204 # 1xk5A.127.112 read from T0506.t2k.many.frag # found chain 1xk5A in template set T0506 127 :IARYPKAKL 1xk5A 209 :HSKLPEEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22205 # 1ro7A.127.95 read from T0506.t2k.many.frag # found chain 1ro7A in training set T0506 127 :IARYPKAKL 1ro7A 96 :YDYFPDAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22206 # 1xttA.127.89 read from T0506.t2k.many.frag # found chain 1xttA in training set T0506 127 :IARYPKAKL 1xttA 90 :LKAFPKARQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22207 # 1kr7A.127.15 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 127 :IARYPKAKL 1kr7A 15 :FKAHPEYQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22208 # 2bh4X.127.115 read from T0506.t2k.many.frag # found chain 2bh4X in template set Warning: unaligning (T0506)A133 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bh4X)G123 Warning: unaligning (T0506)K134 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bh4X)G123 T0506 127 :IARYPK 2bh4X 116 :AQHSPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22209 1gvhA expands to /projects/compbio/data/pdb/1gvh.pdb.gz 1gvhA:# 1gvhA.127.32 read from T0506.t2k.many.frag # adding 1gvhA to template set # found chain 1gvhA in template set T0506 127 :IARYPKAKL 1gvhA 33 :FTHNPELKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22210 # 1rqbA.127.293 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 127 :IARYPKAKL 1rqbA 283 :KAIRPKYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22211 # 1nekA.127.273 read from T0506.t2k.many.frag # found chain 1nekA in template set T0506 127 :IARYPKAKL 1nekA 274 :ERYAPNAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22212 # 1ei9A.127.31 read from T0506.t2k.many.frag # found chain 1ei9A in template set Warning: unaligning (T0506)R129 (1ei9A)K61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K132 (1ei9A)G64 because T (delta_L) conformation "forbidden" or filtered. T0506 127 :IA 1ei9A 59 :EK T0506 130 :YP 1ei9A 62 :IP T0506 133 :AKL 1ei9A 65 :IHV Number of specific fragments extracted= 3 number of extra gaps= 2 total=22215 # 1g66A.127.29 read from T0506.t2k.many.frag # found chain 1g66A in training set T0506 127 :IARYPKAKL 1g66A 30 :LSAYPGSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22216 # 1tu9A.127.30 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 127 :IARYPKAKL 1tu9A 29 :LASSPQIRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22217 # 1m15A.127.152 read from T0506.t2k.many.frag # found chain 1m15A in training set T0506 127 :IARYPKAKL 1m15A 153 :SSTLSSMED Number of specific fragments extracted= 1 number of extra gaps= 0 total=22218 1jb7B expands to /projects/compbio/data/pdb/1jb7.pdb.gz 1jb7B:Skipped atom 3896, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3898, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3900, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3902, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3904, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3906, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3908, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3910, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3912, because occupancy 0.300 <= existing 0.700 in 1jb7B Skipped atom 3972, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 3974, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 3976, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 3978, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 3980, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 3982, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 3984, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 3986, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4463, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4465, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4467, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4469, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4471, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4473, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4475, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4477, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4479, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4481, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4483, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4485, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4487, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4489, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4491, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4493, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4495, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4497, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4499, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4501, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4503, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4505, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4507, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4509, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4511, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4513, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4515, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4517, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4519, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4521, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4523, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4525, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4527, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4694, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4696, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4698, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4700, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4702, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4704, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4706, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4708, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4710, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4712, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 4714, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5229, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5231, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5233, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5235, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5237, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5239, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5241, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5243, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5245, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5348, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5350, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5352, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5354, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5356, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5358, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5360, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5362, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5492, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5494, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5496, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5498, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5500, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5502, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5504, because occupancy 0.500 <= existing 0.500 in 1jb7B Skipped atom 5506, because occupancy 0.500 <= existing 0.500 in 1jb7B # 1jb7B.127.71 read from T0506.t2k.many.frag # adding 1jb7B to template set # found chain 1jb7B in template set T0506 127 :IARYPKAKL 1jb7B 72 :HAKFPNVNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22219 # 1i1wA.127.160 read from T0506.t2k.many.frag # found chain 1i1wA in training set T0506 127 :IARYPKAKL 1i1wA 161 :RAADPNAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22220 # 1xhnA.128.136 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 128 :ARYPKAKLY 1xhnA 137 :IRHPEMKTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22221 # 2f5uA.128.54 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 128 :ARYPKAKLY 2f5uA 188 :TDFPLTTRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22222 # 1dqaA.128.251 read from T0506.t2k.many.frag # found chain 1dqaA in template set T0506 128 :ARYPKAKLY 1dqaA 673 :EYFPEMQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22223 # 2bbrA.128.120 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 128 :ARYPKAKLY 2bbrA 121 :NLNPSLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22224 # 1rv9A.128.184 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 128 :ARYPKAKLY 1rv9A 185 :TPMPEAATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22225 # 1ro7A.128.96 read from T0506.t2k.many.frag # found chain 1ro7A in training set T0506 128 :ARYPKAKLY 1ro7A 97 :DYFPDAHLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22226 # 1o7jA.128.40 read from T0506.t2k.many.frag # found chain 1o7jA in training set T0506 128 :ARYPKAKLY 1o7jA 41 :NAVPEVKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22227 # 2bk9A.128.32 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 128 :ARYPKAKLY 2bk9A 33 :NRFPSNLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22228 # 1u4bA.128.444 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 128 :ARYPKAKLY 1u4bA 741 :ESFPGVKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22229 # 1gvhA.128.33 read from T0506.t2k.many.frag # found chain 1gvhA in template set T0506 128 :ARYPKAKLY 1gvhA 34 :THNPELKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22230 # 1ew6A.128.25 read from T0506.t2k.many.frag # found chain 1ew6A in training set Warning: unaligning (T0506)Y130 (1ew6A)Y28 because D (zeta) conformation "forbidden" or filtered. T0506 128 :AR 1ew6A 26 :NK T0506 131 :PKAKLY 1ew6A 29 :PDERRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22232 # 1wn5A.128.96 read from T0506.t2k.many.frag # found chain 1wn5A in template set Warning: unaligning (T0506)A133 (1wn5A)I102 because P (beta_P) conformation "forbidden" or filtered. T0506 128 :ARYPK 1wn5A 97 :DLHPG T0506 134 :KLY 1wn5A 103 :KAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22234 # 1xttA.128.90 read from T0506.t2k.many.frag # found chain 1xttA in training set T0506 128 :ARYPKAKLY 1xttA 91 :KAFPKARQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22235 # 1kr7A.128.16 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 128 :ARYPKAKLY 1kr7A 16 :KAHPEYQNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22236 # 1rqbA.128.294 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 128 :ARYPKAKLY 1rqbA 284 :AIRPKYKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22237 # 1v6sA.128.78 read from T0506.t2k.many.frag # found chain 1v6sA in training set T0506 128 :ARYPKAKLY 1v6sA 79 :AHLPEARFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22238 # 2fcjA.128.71 read from T0506.t2k.many.frag # found chain 2fcjA in template set T0506 128 :ARYPKAKLY 2fcjA 72 :RMFPEAEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22239 # 1nekA.128.274 read from T0506.t2k.many.frag # found chain 1nekA in template set T0506 128 :ARYPKAKLY 1nekA 275 :RYAPNAKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22240 # 1ryiA.128.296 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 128 :ARYPKAKLY 1ryiA 284 :TMLPAIQNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22241 # 1xk5A.128.113 read from T0506.t2k.many.frag # found chain 1xk5A in template set T0506 128 :ARYPKAKLY 1xk5A 210 :SKLPEEEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22242 # 1h6fA.128.176 read from T0506.t2k.many.frag # found chain 1h6fA in training set T0506 128 :ARYPKAKLY 1h6fA 275 :DNNPFAKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22243 # 1tu9A.128.31 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 128 :ARYPKAKLY 1tu9A 30 :ASSPQIRAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22244 1amx expands to /projects/compbio/data/pdb/1amx.pdb.gz 1amx:Warning: there is no chain 1amx will retry with 1amxA # 1amx.128.106 read from T0506.t2k.many.frag # adding 1amx to template set # found chain 1amx in template set Warning: unaligning (T0506)K132 (1amx)G249 because T (delta_L) conformation "forbidden" or filtered. T0506 128 :ARYP 1amx 245 :KAFP T0506 133 :AKLY 1amx 250 :SKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22246 # 2bh4X.128.116 read from T0506.t2k.many.frag # found chain 2bh4X in template set Warning: unaligning (T0506)A133 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bh4X)G123 Warning: unaligning (T0506)K134 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bh4X)G123 T0506 128 :ARYPK 2bh4X 117 :QHSPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=22247 # 1vqoB.128.104 read from T0506.t2k.many.frag # found chain 1vqoB in template set T0506 128 :ARYPKAKLY 1vqoB 104 :EFHSELDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22248 # 1hl9A.128.243 read from T0506.t2k.many.frag # found chain 1hl9A in template set Warning: unaligning (T0506)K134 (1hl9A)S250 because Y (epsilon') conformation "forbidden" or filtered. T0506 128 :ARYPKA 1hl9A 244 :NKHPEG T0506 135 :LY 1hl9A 251 :VN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22250 # 1nw3A.128.45 read from T0506.t2k.many.frag # found chain 1nw3A in template set T0506 128 :ARYPKAKLY 1nw3A 46 :EEIPDLKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22251 # 2akaB.128.254 read from T0506.t2k.many.frag # found chain 2akaB in template set T0506 128 :ARYPKAKLY 2akaB 260 :LSHPSYRHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22252 # 1rqwA.128.174 read from T0506.t2k.many.frag # found chain 1rqwA in training set Warning: unaligning (T0506)Y136 (1rqwA)Y183 because Y (epsilon') conformation "forbidden" or filtered. T0506 128 :ARYPKAKL 1rqwA 175 :RLCPDAFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22253 # 1w5qA.128.116 read from T0506.t2k.many.frag # found chain 1w5qA in template set Warning: unaligning (T0506)A133 (1w5qA)L122 because P (beta_P) conformation "forbidden" or filtered. T0506 128 :ARYPK 1w5qA 117 :ERFPE T0506 134 :KLY 1w5qA 123 :GII Number of specific fragments extracted= 2 number of extra gaps= 1 total=22255 # 1xhnA.129.137 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 129 :RYPKAKLYL 1xhnA 138 :RHPEMKTWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22256 # 2f5uA.129.55 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 129 :RYPKAKLYL 2f5uA 189 :DFPLTTRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22257 # 1rv9A.129.185 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 129 :RYPKAKLYL 1rv9A 186 :PMPEAATAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22258 # 1o7jA.129.41 read from T0506.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0506)L137 (1o7jA)A50 because Y (epsilon') conformation "forbidden" or filtered. T0506 129 :RYPKAKLY 1o7jA 42 :AVPEVKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22259 # 1gvhA.129.34 read from T0506.t2k.many.frag # found chain 1gvhA in template set T0506 129 :RYPKAKLYL 1gvhA 35 :HNPELKEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22260 # 1kr7A.129.17 read from T0506.t2k.many.frag # found chain 1kr7A in training set Warning: unaligning (T0506)Y136 (1kr7A)K24 because G (3-10) conformation "forbidden" or filtered. T0506 129 :RYPKAKL 1kr7A 17 :AHPEYQN T0506 137 :L 1kr7A 25 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=22262 # 2bbrA.129.121 read from T0506.t2k.many.frag # found chain 2bbrA in template set T0506 129 :RYPKAKLYL 2bbrA 122 :LNPSLSTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22263 # 2bk9A.129.33 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 129 :RYPKAKLYL 2bk9A 34 :RFPSNLEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22264 # 1rqbA.129.295 read from T0506.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0506)Y136 (1rqbA)F292 because G (3-10) conformation "forbidden" or filtered. T0506 129 :RYPKAKL 1rqbA 285 :IRPKYKK T0506 137 :L 1rqbA 293 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22266 # 1nekA.129.275 read from T0506.t2k.many.frag # found chain 1nekA in template set T0506 129 :RYPKAKLYL 1nekA 276 :YAPNAKDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22267 # 1ew6A.129.26 read from T0506.t2k.many.frag # found chain 1ew6A in training set T0506 129 :RYPKAKLYL 1ew6A 27 :KYPDERRYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22268 # 1vqoB.129.105 read from T0506.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0506)K132 (1vqoB)E108 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K134 (1vqoB)D110 because G (3-10) conformation "forbidden" or filtered. T0506 129 :RYP 1vqoB 105 :FHS T0506 133 :A 1vqoB 109 :L T0506 135 :LYL 1vqoB 111 :RTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22271 # 1ro7A.129.97 read from T0506.t2k.many.frag # found chain 1ro7A in training set T0506 129 :RYPKAKLYL 1ro7A 98 :YFPDAHLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22272 # 1dqaA.129.252 read from T0506.t2k.many.frag # found chain 1dqaA in template set T0506 129 :RYPKAKLYL 1dqaA 674 :YFPEMQILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22273 1y5iC expands to /projects/compbio/data/pdb/1y5i.pdb.gz 1y5iC:# 1y5iC.129.168 read from T0506.t2k.many.frag # adding 1y5iC to template set # found chain 1y5iC in template set Warning: unaligning (T0506)R129 (1y5iC)F169 because L (left) conformation "forbidden" or filtered. T0506 130 :YPKAKLYL 1y5iC 170 :HGGASQHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22274 # 1u4bA.129.445 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 129 :RYPKAKLYL 1u4bA 742 :SFPGVKRYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22275 # 1h6fA.129.177 read from T0506.t2k.many.frag # found chain 1h6fA in training set T0506 129 :RYPKAKLYL 1h6fA 276 :NNPFAKGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22276 # 1wn5A.129.97 read from T0506.t2k.many.frag # found chain 1wn5A in template set T0506 129 :RYPKAKLYL 1wn5A 98 :LHPGIKAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22277 # 1w6sA.129.560 read from T0506.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)L137 (1w6sA)T569 because Y (epsilon') conformation "forbidden" or filtered. T0506 129 :RYPKAKLY 1w6sA 561 :AFKKLANY Number of specific fragments extracted= 1 number of extra gaps= 1 total=22278 # 1nw3A.129.46 read from T0506.t2k.many.frag # found chain 1nw3A in template set T0506 129 :RYPKAKLYL 1nw3A 47 :EIPDLKLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22279 1ash expands to /projects/compbio/data/pdb/1ash.pdb.gz 1ash:Warning: there is no chain 1ash will retry with 1ashA # 1ash.129.36 read from T0506.t2k.many.frag # adding 1ash to template set # found chain 1ash in template set T0506 129 :RYPKAKLYL 1ash 36 :NYPPLRKYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22280 # 2akaB.129.255 read from T0506.t2k.many.frag # found chain 2akaB in template set T0506 129 :RYPKAKLYL 2akaB 261 :SHPSYRHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22281 # 1ks8A.129.197 read from T0506.t2k.many.frag # found chain 1ks8A in training set T0506 129 :RYPKAKLYL 1ks8A 198 :SITDARNFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22282 # 1amx.129.107 read from T0506.t2k.many.frag # found chain 1amx in template set Warning: unaligning (T0506)A133 (1amx)S250 because P (beta_P) conformation "forbidden" or filtered. T0506 129 :RYPK 1amx 246 :AFPG T0506 134 :KLYL 1amx 251 :KITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22284 # 1xttA.129.91 read from T0506.t2k.many.frag # found chain 1xttA in training set T0506 129 :RYPKAKLYL 1xttA 92 :AFPKARQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22285 # 1tu9A.129.32 read from T0506.t2k.many.frag # found chain 1tu9A in training set T0506 129 :RYPKAKLYL 1tu9A 31 :SSPQIRAKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22286 # 1tl9A.129.172 read from T0506.t2k.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P131 (1tl9A)G200 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K132 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. T0506 129 :RY 1tl9A 198 :VN T0506 133 :AKLYL 1tl9A 202 :YEALS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22288 # 1tr9A.129.290 read from T0506.t2k.many.frag # found chain 1tr9A in training set T0506 129 :RYPKAKLYL 1tr9A 290 :EVPQAEALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22289 # 1ryiA.129.297 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 129 :RYPKAKLYL 1ryiA 285 :MLPAIQNMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22290 # 1rqwA.129.175 read from T0506.t2k.many.frag # found chain 1rqwA in training set T0506 129 :RYPKAKLYL 1rqwA 176 :LCPDAFSYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22291 # 1xhnA.130.138 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 130 :YPKAKLYLS 1xhnA 139 :HPEMKTWPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22292 # 2f5uA.130.56 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 130 :YPKAKLYLS 2f5uA 190 :FPLTTRSAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22293 # 1o7jA.130.42 read from T0506.t2k.many.frag # found chain 1o7jA in training set T0506 130 :YPKAKLYLS 1o7jA 43 :VPEVKKLAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22294 # 1rv9A.130.186 read from T0506.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0506)Y136 (1rv9A)A193 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YPKAKL 1rv9A 187 :MPEAAT T0506 137 :LS 1rv9A 194 :FE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22296 # 1gvhA.130.35 read from T0506.t2k.many.frag # found chain 1gvhA in template set T0506 130 :YPKAKLYLS 1gvhA 36 :NPELKEIFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22297 # 1rqbA.130.296 read from T0506.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0506)Y136 (1rqbA)F292 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YPKAKL 1rqbA 286 :RPKYKK T0506 137 :LS 1rqbA 293 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=22299 # 1vqoB.130.106 read from T0506.t2k.many.frag # found chain 1vqoB in template set T0506 130 :YPKAKLYLS 1vqoB 106 :HSELDRTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22300 # 2bk9A.130.34 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 130 :YPKAKLYLS 2bk9A 35 :FPSNLEKFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22301 # 1kr7A.130.18 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 130 :YPKAKLYLS 1kr7A 18 :HPEYQNKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22302 # 1w6sA.130.561 read from T0506.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)L137 (1w6sA)T569 because Y (epsilon') conformation "forbidden" or filtered. T0506 130 :YPKAKLY 1w6sA 562 :FKKLANY T0506 138 :S 1w6sA 570 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=22304 # 1ew6A.130.27 read from T0506.t2k.many.frag # found chain 1ew6A in training set T0506 130 :YPKAKLYLS 1ew6A 28 :YPDERRYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22305 # 2bbrA.130.122 read from T0506.t2k.many.frag # found chain 2bbrA in template set Warning: unaligning (T0506)S138 (2bbrA)S131 because Y (epsilon') conformation "forbidden" or filtered. T0506 130 :YPKAKLYL 2bbrA 123 :NPSLSTAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22306 # 1u4bA.130.446 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 130 :YPKAKLYLS 1u4bA 743 :FPGVKRYME Number of specific fragments extracted= 1 number of extra gaps= 0 total=22307 # 1y5iC.130.169 read from T0506.t2k.many.frag # found chain 1y5iC in template set T0506 130 :YPKAKLYLS 1y5iC 170 :HGGASQHLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22308 # 1nekA.130.276 read from T0506.t2k.many.frag # found chain 1nekA in template set T0506 130 :YPKAKLYLS 1nekA 277 :APNAKDLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22309 # 1tr9A.130.291 read from T0506.t2k.many.frag # found chain 1tr9A in training set T0506 130 :YPKAKLYLS 1tr9A 291 :VPQAEALLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22310 # 1ks8A.130.198 read from T0506.t2k.many.frag # found chain 1ks8A in training set T0506 130 :YPKAKLYLS 1ks8A 199 :ITDARNFYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22311 # 1ash.130.37 read from T0506.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0506)Y130 (1ash)Y37 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE in next template residue (1ash)S46 T0506 131 :PKAKLYL 1ash 38 :PPLRKYF Number of specific fragments extracted= 1 number of extra gaps= 2 total=22312 # 1h6fA.130.178 read from T0506.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0506)Y136 (1h6fA)F283 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 because last residue in template chain is (1h6fA)D285 T0506 130 :YPKAKL 1h6fA 277 :NPFAKG T0506 137 :L 1h6fA 284 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=22314 # 1g5tA.130.108 read from T0506.t2k.many.frag # found chain 1g5tA in training set T0506 130 :YPKAKLYLS 1g5tA 109 :WQHGKRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22315 # 1wn5A.130.98 read from T0506.t2k.many.frag # found chain 1wn5A in template set T0506 130 :YPKAKLYLS 1wn5A 99 :HPGIKAIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22316 # 1eyhA.130.85 read from T0506.t2k.many.frag # found chain 1eyhA in training set Warning: unaligning (T0506)S138 (1eyhA)D108 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YPKAKLYL 1eyhA 100 :MYAVQTLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22317 # 1tl9A.130.173 read from T0506.t2k.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P131 (1tl9A)G200 because T (delta_L) conformation "forbidden" or filtered. T0506 130 :Y 1tl9A 199 :N T0506 132 :KAKLYLS 1tl9A 201 :SYEALSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=22319 # 1nw3A.130.47 read from T0506.t2k.many.frag # found chain 1nw3A in template set T0506 130 :YPKAKLYLS 1nw3A 48 :IPDLKLAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=22320 # 2akaB.130.256 read from T0506.t2k.many.frag # found chain 2akaB in template set T0506 130 :YPKAKLYLS 2akaB 262 :HPSYRHLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22321 # 1ryiA.130.298 read from T0506.t2k.many.frag # found chain 1ryiA in training set T0506 130 :YPKAKLYLS 1ryiA 286 :LPAIQNMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22322 # 1ql0A.130.94 read from T0506.t2k.many.frag # found chain 1ql0A in training set T0506 130 :YPKAKLYLS 1ql0A 99 :VSDWESLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22323 1gmlA expands to /projects/compbio/data/pdb/1gml.pdb.gz 1gmlA:# 1gmlA.130.17 read from T0506.t2k.many.frag # adding 1gmlA to template set # found chain 1gmlA in template set T0506 130 :YPKAKLYLS 1gmlA 226 :HPRMRRYIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22324 1xrjA expands to /projects/compbio/data/pdb/1xrj.pdb.gz 1xrjA:# 1xrjA.130.196 read from T0506.t2k.many.frag # adding 1xrjA to template set # found chain 1xrjA in template set T0506 130 :YPKAKLYLS 1xrjA 197 :CLPTKKYAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22325 # 1ro7A.130.98 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)K132 (1ro7A)D101 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YP 1ro7A 99 :FP T0506 133 :AKLYLS 1ro7A 102 :AHLGYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22327 # 1xhnA.131.139 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 131 :PKAKLYLSL 1xhnA 140 :PEMKTWPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22328 # 1vqoB.131.107 read from T0506.t2k.many.frag # found chain 1vqoB in template set T0506 131 :PKAKLYLSL 1vqoB 107 :SELDRTLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22329 # 2f5uA.131.57 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 131 :PKAKLYLSL 2f5uA 191 :PLTTRSADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22330 # 1w6sA.131.562 read from T0506.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)Y136 (1w6sA)Y568 because G (3-10) conformation "forbidden" or filtered. T0506 131 :PKAKL 1w6sA 563 :KKLAN T0506 137 :LSL 1w6sA 569 :TQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22332 # 1rqbA.131.297 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 131 :PKAKLYLSL 1rqbA 287 :PKYKKFESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22333 # 1gvhA.131.36 read from T0506.t2k.many.frag # found chain 1gvhA in template set T0506 131 :PKAKLYLSL 1gvhA 37 :PELKEIFNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22334 # 1o7jA.131.43 read from T0506.t2k.many.frag # found chain 1o7jA in training set T0506 131 :PKAKLYLSL 1o7jA 44 :PEVKKLANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22335 # 1rv9A.131.187 read from T0506.t2k.many.frag # found chain 1rv9A in training set T0506 131 :PKAKLYLSL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22336 # 1tr9A.131.292 read from T0506.t2k.many.frag # found chain 1tr9A in training set T0506 131 :PKAKLYLSL 1tr9A 292 :PQAEALLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22337 # 2bk9A.131.35 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 131 :PKAKLYLSL 2bk9A 36 :PSNLEKFPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22338 # 1kr7A.131.19 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 131 :PKAKLYLSL 1kr7A 19 :PEYQNKFGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22339 # 1g5tA.131.109 read from T0506.t2k.many.frag # found chain 1g5tA in training set T0506 131 :PKAKLYLSL 1g5tA 110 :QHGKRMLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22340 # 1ash.131.38 read from T0506.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE in next template residue (1ash)S46 Warning: unaligning (T0506)L139 because of BadResidue code BAD_PEPTIDE at template residue (1ash)S46 T0506 131 :PKAKLYL 1ash 38 :PPLRKYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22341 # 1ks8A.131.199 read from T0506.t2k.many.frag # found chain 1ks8A in training set Warning: unaligning (T0506)S138 (1ks8A)A207 because P (beta_P) conformation "forbidden" or filtered. T0506 131 :PKAKLYL 1ks8A 200 :TDARNFY T0506 139 :L 1ks8A 208 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=22343 # 1y5iC.131.170 read from T0506.t2k.many.frag # found chain 1y5iC in template set Warning: unaligning (T0506)S138 (1y5iC)D178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1y5iC)G179 because T (delta_L) conformation "forbidden" or filtered. T0506 131 :PKAKLYL 1y5iC 171 :GGASQHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22344 # 2fckA.131.35 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)L139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 T0506 131 :PKAKLYLS 2fckA 33 :QTLHQWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22345 # 1ew6A.131.28 read from T0506.t2k.many.frag # found chain 1ew6A in training set T0506 131 :PKAKLYLSL 1ew6A 29 :PDERRYFKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22346 # 1r0pA.131.273 read from T0506.t2k.many.frag # found chain 1r0pA in training set T0506 131 :PKAKLYLSL 1r0pA 1322 :PKAEMRPSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22347 # 2bbrA.131.123 read from T0506.t2k.many.frag # found chain 2bbrA in template set Warning: unaligning (T0506)S138 (2bbrA)S131 because Y (epsilon') conformation "forbidden" or filtered. T0506 131 :PKAKLYL 2bbrA 124 :PSLSTAL T0506 139 :L 2bbrA 132 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22349 # 1eyhA.131.86 read from T0506.t2k.many.frag # found chain 1eyhA in training set T0506 131 :PKAKLYLSL 1eyhA 101 :YAVQTLKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22350 # 1nekA.131.277 read from T0506.t2k.many.frag # found chain 1nekA in template set T0506 131 :PKAKLYLSL 1nekA 278 :PNAKDLAGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22351 # 1xrjA.131.197 read from T0506.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0506)A133 (1xrjA)T200 because G (3-10) conformation "forbidden" or filtered. T0506 131 :PK 1xrjA 198 :LP T0506 134 :KLYLSL 1xrjA 201 :KKYADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22353 # 1tl9A.131.174 read from T0506.t2k.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P131 (1tl9A)G200 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K132 (1tl9A)S201 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y136 (1tl9A)L205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1tl9A)G207 because L (left) conformation "forbidden" or filtered. T0506 133 :AKL 1tl9A 202 :YEA T0506 137 :L 1tl9A 206 :S T0506 139 :L 1tl9A 208 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=22356 # 1h6fA.131.179 read from T0506.t2k.many.frag # found chain 1h6fA in training set Warning: unaligning (T0506)S138 because last residue in template chain is (1h6fA)D285 T0506 131 :PKAKLYL 1h6fA 278 :PFAKGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22357 1rp4A expands to /projects/compbio/data/pdb/1rp4.pdb.gz 1rp4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rp4A.131.29 read from T0506.t2k.many.frag # adding 1rp4A to template set # found chain 1rp4A in template set T0506 131 :PKAKLYLSL 1rp4A 68 :DDLSALLKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22358 2bmaA expands to /projects/compbio/data/pdb/2bma.pdb.gz 2bmaA:# 2bmaA.131.310 read from T0506.t2k.many.frag # adding 2bmaA to template set # found chain 2bmaA in template set T0506 131 :PKAKLYLSL 2bmaA 289 :GRIKEYLNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=22359 # 1fy7A.131.102 read from T0506.t2k.many.frag # found chain 1fy7A in template set Warning: unaligning (T0506)A133 (1fy7A)K262 because E (beta_S) conformation "forbidden" or filtered. T0506 131 :PK 1fy7A 260 :DH T0506 134 :KLYLSL 1fy7A 263 :TLYYDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22361 # 1u4bA.131.447 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 131 :PKAKLYLSL 1u4bA 744 :PGVKRYMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22362 # 1zupA.131.266 read from T0506.t2k.many.frag # found chain 1zupA in template set Warning: unaligning (T0506)L137 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zupA)A262 Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zupA)A262 T0506 131 :PKAKLY 1zupA 255 :KTLPHL T0506 139 :L 1zupA 263 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=22364 # 1txkA.131.412 read from T0506.t2k.many.frag # found chain 1txkA in template set T0506 131 :PKAKLYLSL 1txkA 434 :AEMKKLPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=22365 # 1xhnA.132.140 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1xhnA 141 :EMKTWPSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22366 # 1w6sA.132.563 read from T0506.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)L137 (1w6sA)T569 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0506 132 :KAKLY 1w6sA 564 :KLANY T0506 138 :SL 1w6sA 570 :QM Number of specific fragments extracted= 2 number of extra gaps= 2 total=22368 # 2f5uA.132.58 read from T0506.t2k.many.frag # found chain 2f5uA in template set T0506 132 :KAKLYLSLP 2f5uA 192 :LTTRSADFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22369 # 1vqoB.132.108 read from T0506.t2k.many.frag # found chain 1vqoB in template set T0506 132 :KAKLYLSLP 1vqoB 108 :ELDRTLDVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22370 # 2bk9A.132.36 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 132 :KAKLYLSLP 2bk9A 37 :SNLEKFPFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22371 # 1kr7A.132.20 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 132 :KAKLYLSLP 1kr7A 20 :EYQNKFGFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22372 # 1o7jA.132.44 read from T0506.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0506)P140 (1o7jA)K53 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1o7jA 45 :EVKKLANV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22373 # 1gvhA.132.37 read from T0506.t2k.many.frag # found chain 1gvhA in template set T0506 132 :KAKLYLSLP 1gvhA 38 :ELKEIFNMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22374 # 1tr9A.132.293 read from T0506.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0506)P140 (1tr9A)Q301 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1tr9A 293 :QAEALLKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22375 # 1ash.132.39 read from T0506.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE in next template residue (1ash)S46 Warning: unaligning (T0506)L139 because of BadResidue code BAD_PEPTIDE at template residue (1ash)S46 Warning: unaligning (T0506)P140 (1ash)R47 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYL 1ash 39 :PLRKYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22376 # 1g5tA.132.110 read from T0506.t2k.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)S138 (1g5tA)A117 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYL 1g5tA 111 :HGKRML T0506 139 :LP 1g5tA 118 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22378 # 1rqbA.132.298 read from T0506.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0506)P140 (1rqbA)T296 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1rqbA 288 :KYKKFESK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22379 # 1eyhA.132.87 read from T0506.t2k.many.frag # found chain 1eyhA in training set Warning: unaligning (T0506)P140 (1eyhA)Q110 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1eyhA 102 :AVQTLKDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=22380 # 1xdzA.132.60 read from T0506.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0506)Y136 (1xdzA)Y64 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKL 1xdzA 60 :TAAF T0506 137 :LSLP 1xdzA 65 :VDFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=22382 # 2fckA.132.36 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)L139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 T0506 132 :KAKLYLS 2fckA 34 :TLHQWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22383 # 1fy7A.132.103 read from T0506.t2k.many.frag # found chain 1fy7A in template set Warning: unaligning (T0506)A133 (1fy7A)K262 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :K 1fy7A 261 :H T0506 134 :KLYLSLP 1fy7A 263 :TLYYDVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22385 # 1rv9A.132.188 read from T0506.t2k.many.frag # found chain 1rv9A in training set Warning: unaligning (T0506)P140 (1rv9A)I197 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1rv9A 189 :EAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=22386 # 1vajA.132.122 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)P140 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1vajA 123 :ERPRKIKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22387 # 1xrjA.132.198 read from T0506.t2k.many.frag # found chain 1xrjA in template set Warning: unaligning (T0506)P140 (1xrjA)I207 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1xrjA 199 :PTKKYADV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22388 # 1noyA.132.234 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)P140 (1noyA)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1noyA 235 :SMKRFSPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22389 # 2bx6A.132.286 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)Y136 (2bx6A)L291 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (2bx6A)G295 because Y (epsilon') conformation "forbidden" or filtered. T0506 132 :KAKL 2bx6A 287 :DFLP T0506 137 :LSL 2bx6A 292 :LNK Number of specific fragments extracted= 2 number of extra gaps= 2 total=22391 # 1ks8A.132.200 read from T0506.t2k.many.frag # found chain 1ks8A in training set Warning: unaligning (T0506)S138 (1ks8A)A207 because P (beta_P) conformation "forbidden" or filtered. T0506 132 :KAKLYL 1ks8A 201 :DARNFY T0506 139 :LP 1ks8A 208 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22393 # 1y5iC.132.171 read from T0506.t2k.many.frag # found chain 1y5iC in template set Warning: unaligning (T0506)K132 (1y5iC)G172 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1y5iC)G179 because T (delta_L) conformation "forbidden" or filtered. T0506 133 :AKLYLS 1y5iC 173 :ASQHLD T0506 140 :P 1y5iC 180 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=22395 # 1rp4A.132.30 read from T0506.t2k.many.frag # found chain 1rp4A in template set T0506 132 :KAKLYLSLP 1rp4A 69 :DLSALLKSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22396 # 1fm0D.132.40 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 132 :KAKLYLSLP 1fm0D 41 :RWALALEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22397 # 1ew6A.132.29 read from T0506.t2k.many.frag # found chain 1ew6A in training set Warning: unaligning (T0506)L137 (1ew6A)F35 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1ew6A)Y38 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLY 1ew6A 30 :DERRY T0506 138 :SL 1ew6A 36 :KN Number of specific fragments extracted= 2 number of extra gaps= 2 total=22399 # 2bmaA.132.311 read from T0506.t2k.many.frag # found chain 2bmaA in template set Warning: unaligning (T0506)K132 (2bmaA)R290 because E (beta_S) conformation "forbidden" or filtered. T0506 133 :AKLYLSLP 2bmaA 291 :IKEYLNHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22400 # 1r0pA.132.274 read from T0506.t2k.many.frag # found chain 1r0pA in training set T0506 132 :KAKLYLSLP 1r0pA 1323 :KAEMRPSFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22401 # 2bbrA.132.124 read from T0506.t2k.many.frag # found chain 2bbrA in template set Warning: unaligning (T0506)P140 (2bbrA)S133 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 2bbrA 125 :SLSTALSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22402 1r71A expands to /projects/compbio/data/pdb/1r71.pdb.gz 1r71A:# 1r71A.132.109 read from T0506.t2k.many.frag # adding 1r71A to template set # found chain 1r71A in template set T0506 132 :KAKLYLSLP 1r71A 226 :EVEAWLDDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22403 # 1xhnA.133.141 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1xhnA 142 :MKTWPSS T0506 141 :D 1xhnA 150 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=22405 # 1fy7A.133.104 read from T0506.t2k.many.frag # found chain 1fy7A in template set Warning: unaligning (T0506)A133 (1fy7A)K262 because E (beta_S) conformation "forbidden" or filtered. T0506 134 :KLYLSLPD 1fy7A 263 :TLYYDVDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=22406 # 1w6sA.133.564 read from T0506.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)L137 (1w6sA)T569 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0506 133 :AKLY 1w6sA 565 :LANY T0506 138 :SL 1w6sA 570 :QM T0506 141 :D 1w6sA 573 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=22409 # 2bx6A.133.287 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)P140 (2bx6A)G295 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (2bx6A)P296 because P (beta_P) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 2bx6A 288 :FLPLLNK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22410 # 1vqoB.133.109 read from T0506.t2k.many.frag # found chain 1vqoB in template set T0506 133 :AKLYLSLPD 1vqoB 109 :LDRTLDVPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22411 # 1vajA.133.123 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)P140 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1vajA 124 :RPRKIKV T0506 141 :D 1vajA 132 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=22413 # 2f5uA.133.59 read from T0506.t2k.many.frag # found chain 2f5uA in template set Warning: unaligning (T0506)D141 (2f5uA)D201 because L (left) conformation "forbidden" or filtered. T0506 133 :AKLYLSLP 2f5uA 193 :TTRSADFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22414 # 1fm0D.133.41 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 133 :AKLYLSLPD 1fm0D 42 :WALALEDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22415 # 1g5tA.133.111 read from T0506.t2k.many.frag # found chain 1g5tA in training set T0506 133 :AKLYLSLPD 1g5tA 112 :GKRMLADPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22416 # 1xdzA.133.61 read from T0506.t2k.many.frag # found chain 1xdzA in training set T0506 133 :AKLYLSLPD 1xdzA 61 :AAFYVDFNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22417 # 2bk9A.133.37 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 133 :AKLYLSLPD 2bk9A 38 :NLEKFPFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22418 # 1ash.133.40 read from T0506.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE in next template residue (1ash)S46 Warning: unaligning (T0506)L139 because of BadResidue code BAD_PEPTIDE at template residue (1ash)S46 Warning: unaligning (T0506)P140 (1ash)R47 because G (3-10) conformation "forbidden" or filtered. T0506 133 :AKLYL 1ash 40 :LRKYF T0506 141 :D 1ash 48 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22420 # 1eyhA.133.88 read from T0506.t2k.many.frag # found chain 1eyhA in training set Warning: unaligning (T0506)P140 (1eyhA)Q110 because E (beta_S) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1eyhA 103 :VQTLKDF T0506 141 :D 1eyhA 111 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=22422 # 1noyA.133.235 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)P140 (1noyA)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1noyA 236 :MKRFSPI T0506 141 :D 1noyA 244 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=22424 # 1kr7A.133.21 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 133 :AKLYLSLPD 1kr7A 21 :YQNKFGFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22425 # 1l3kA.133.33 read from T0506.t2k.many.frag # found chain 1l3kA in training set Warning: unaligning (T0506)Y136 (1l3kA)W37 because G (3-10) conformation "forbidden" or filtered. T0506 133 :AKL 1l3kA 34 :FEQ T0506 137 :LSLPD 1l3kA 38 :GTLTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22427 # 1h4aX.133.110 read from T0506.t2k.many.frag # found chain 1h4aX in training set Warning: unaligning (T0506)P140 (1h4aX)N119 because G (3-10) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1h4aX 112 :LQDRFRF T0506 141 :D 1h4aX 120 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=22429 # 1rp4A.133.31 read from T0506.t2k.many.frag # found chain 1rp4A in template set T0506 133 :AKLYLSLPD 1rp4A 70 :LSALLKSDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22430 # 2f1lA.133.44 read from T0506.t2k.many.frag # found chain 2f1lA in template set T0506 133 :AKLYLSLPD 2f1lA 33 :LDNLLDYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22431 # 1ks8A.133.201 read from T0506.t2k.many.frag # found chain 1ks8A in training set T0506 133 :AKLYLSLPD 1ks8A 202 :ARNFYASAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22432 # 1r71A.133.110 read from T0506.t2k.many.frag # found chain 1r71A in template set T0506 133 :AKLYLSLPD 1r71A 227 :VEAWLDDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22433 # 2fckA.133.37 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)L139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fckA)F46 T0506 133 :AKLYLS 2fckA 35 :LHQWVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22434 # 1ne9A.133.218 read from T0506.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)P140 (1ne9A)D226 because G (3-10) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1ne9A 219 :MQAAFDA T0506 141 :D 1ne9A 227 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=22436 # 2bmaA.133.312 read from T0506.t2k.many.frag # found chain 2bmaA in template set T0506 133 :AKLYLSLPD 2bmaA 291 :IKEYLNHSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22437 # 1tr9A.133.294 read from T0506.t2k.many.frag # found chain 1tr9A in training set Warning: unaligning (T0506)P140 (1tr9A)Q301 because E (beta_S) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1tr9A 294 :AEALLKK T0506 141 :D 1tr9A 302 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=22439 # 1gvhA.133.38 read from T0506.t2k.many.frag # found chain 1gvhA in template set T0506 133 :AKLYLSLPD 1gvhA 39 :LKEIFNMSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22440 # 1n08A.133.151 read from T0506.t2k.many.frag # found chain 1n08A in training set T0506 133 :AKLYLSLPD 1n08A 152 :YSSYKKDPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22441 1svb expands to /projects/compbio/data/pdb/1svb.pdb.gz 1svb:Warning: there is no chain 1svb will retry with 1svbA # 1svb.133.187 read from T0506.t2k.many.frag # adding 1svb to template set # found chain 1svb in template set Warning: unaligning (T0506)S138 (1svb)D193 because P (beta_P) conformation "forbidden" or filtered. T0506 133 :AKLYL 1svb 188 :VASGV T0506 139 :LPD 1svb 194 :LAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22443 1a7j expands to /projects/compbio/data/pdb/1a7j.pdb.gz 1a7j:Warning: there is no chain 1a7j will retry with 1a7jA # 1a7j.133.194 read from T0506.t2k.many.frag # adding 1a7j to template set # found chain 1a7j in template set T0506 133 :AKLYLSLPD 1a7j 195 :IVPQFSQTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22444 1i4wA expands to /projects/compbio/data/pdb/1i4w.pdb.gz 1i4wA:# 1i4wA.133.168 read from T0506.t2k.many.frag # adding 1i4wA to template set # found chain 1i4wA in template set Warning: unaligning (T0506)A133 (1i4wA)K157 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L135 (1i4wA)W159 because S (epsilon) conformation "forbidden" or filtered. T0506 134 :K 1i4wA 158 :N T0506 136 :YLSLPD 1i4wA 160 :LYRFGK Number of specific fragments extracted= 2 number of extra gaps= 2 total=22446 # 1xhnA.134.142 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1xhnA 143 :KTWPSS T0506 142 :T 1xhnA 151 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=22448 # 1fy7A.134.105 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 134 :KLYLSLPDT 1fy7A 263 :TLYYDVDPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22449 # 1vajA.134.124 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)P140 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1vajA 125 :PRKIKV T0506 141 :DT 1vajA 132 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22451 # 1fm0D.134.42 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 134 :KLYLSLPDT 1fm0D 43 :ALALEDGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22452 # 1lq9A.134.36 read from T0506.t2k.many.frag # found chain 1lq9A in training set Warning: unaligning (T0506)S138 (1lq9A)E42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1lq9A)G45 because T (delta_L) conformation "forbidden" or filtered. T0506 134 :KLYL 1lq9A 38 :EWIR T0506 139 :LP 1lq9A 43 :VP T0506 142 :T 1lq9A 46 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=22455 # 1vl7A.134.130 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1vl7A 119 :EVLRGL T0506 141 :DT 1vl7A 126 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22457 # 1ne9A.134.219 read from T0506.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)P140 (1ne9A)D226 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1ne9A 220 :QAAFDA T0506 141 :DT 1ne9A 227 :TM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22459 # 2bx6A.134.288 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)P140 (2bx6A)G295 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :KLYLSL 2bx6A 289 :LPLLNK T0506 141 :DT 2bx6A 296 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22461 # 2f1lA.134.45 read from T0506.t2k.many.frag # found chain 2f1lA in template set T0506 134 :KLYLSLPDT 2f1lA 34 :DNLLDYRRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22462 # 1v58A.134.119 read from T0506.t2k.many.frag # found chain 1v58A in training set Warning: unaligning (T0506)P140 (1v58A)G126 because T (delta_L) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1v58A 120 :RPWVDS T0506 141 :DT 1v58A 127 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22464 # 1xdzA.134.62 read from T0506.t2k.many.frag # found chain 1xdzA in training set T0506 134 :KLYLSLPDT 1xdzA 62 :AFYVDFNQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22465 # 1l3kA.134.34 read from T0506.t2k.many.frag # found chain 1l3kA in training set Warning: unaligning (T0506)L137 (1l3kA)G38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1l3kA)T39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1l3kA)D42 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :KLY 1l3kA 35 :EQW T0506 139 :LP 1l3kA 40 :LT T0506 142 :T 1l3kA 43 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=22468 # 1svb.134.188 read from T0506.t2k.many.frag # found chain 1svb in template set T0506 134 :KLYLSLPDT 1svb 189 :ASGVDLAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22469 # 1noyA.134.236 read from T0506.t2k.many.frag # found chain 1noyA in template set Warning: unaligning (T0506)P140 (1noyA)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1noyA 237 :KRFSPI T0506 141 :DT 1noyA 244 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22471 # 1w6sA.134.565 read from T0506.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)Y136 (1w6sA)Y568 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :KL 1w6sA 566 :AN T0506 137 :LSL 1w6sA 569 :TQM T0506 141 :DT 1w6sA 573 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=22474 # 1g5tA.134.112 read from T0506.t2k.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)S138 (1g5tA)A117 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYL 1g5tA 113 :KRML T0506 139 :LPDT 1g5tA 118 :DPLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22476 # 1h4aX.134.111 read from T0506.t2k.many.frag # found chain 1h4aX in training set Warning: unaligning (T0506)P140 (1h4aX)N119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1h4aX)E120 because E (beta_S) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1h4aX 113 :QDRFRF T0506 142 :T 1h4aX 121 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=22478 1z6mA expands to /projects/compbio/data/pdb/1z6m.pdb.gz 1z6mA:Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 20, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 64, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 66, because occupancy 0.250 <= existing 0.250 in 1z6mA Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 72, because occupancy 0.250 <= existing 0.250 in 1z6mA Skipped atom 74, because occupancy 0.250 <= existing 0.250 in 1z6mA Skipped atom 76, because occupancy 0.250 <= existing 0.250 in 1z6mA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 355, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 359, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 361, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 363, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 365, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 367, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 369, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 371, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 380, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 382, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 384, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 386, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 438, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 468, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 470, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 472, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 813, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 815, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 817, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 819, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 821, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 1z6mA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1007, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1009, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1011, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1102, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1108, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1151, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1155, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1157, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1159, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1177, because occupancy 0.250 <= existing 0.250 in 1z6mA Skipped atom 1182, because occupancy 0.250 <= existing 0.250 in 1z6mA Skipped atom 1185, because occupancy 0.250 <= existing 0.250 in 1z6mA Skipped atom 1425, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1429, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1433, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1435, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1437, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1457, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1461, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1463, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1465, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1467, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1469, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1471, because occupancy 0.500 <= existing 0.500 in 1z6mA Skipped atom 1473, because occupancy 0.500 <= existing 0.500 in 1z6mA # 1z6mA.134.53 read from T0506.t2k.many.frag # adding 1z6mA to template set # found chain 1z6mA in template set Warning: unaligning (T0506)P140 (1z6mA)G57 because T (delta_L) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1z6mA 51 :AQSVKS T0506 141 :DT 1z6mA 58 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22480 # 2bk9A.134.38 read from T0506.t2k.many.frag # found chain 2bk9A in template set T0506 134 :KLYLSLPDT 2bk9A 39 :LEKFPFRDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22481 # 1rp4A.134.32 read from T0506.t2k.many.frag # found chain 1rp4A in template set T0506 134 :KLYLSLPDT 1rp4A 71 :SALLKSDFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22482 # 1gttA.134.340 read from T0506.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1gttA 341 :EAIPDP T0506 141 :DT 1gttA 348 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22484 # 1i4wA.134.169 read from T0506.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0506)L135 (1i4wA)W159 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1i4wA)G164 because S (epsilon) conformation "forbidden" or filtered. T0506 134 :K 1i4wA 158 :N T0506 136 :YLSL 1i4wA 160 :LYRF T0506 141 :DT 1i4wA 165 :KV Number of specific fragments extracted= 3 number of extra gaps= 2 total=22487 1g1kA expands to /projects/compbio/data/pdb/1g1k.pdb.gz 1g1kA:# 1g1kA.134.27 read from T0506.t2k.many.frag # adding 1g1kA to template set # found chain 1g1kA in template set Warning: unaligning (T0506)L137 because of BadResidue code BAD_PEPTIDE in next template residue (1g1kA)N33 Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE at template residue (1g1kA)N33 T0506 134 :KLY 1g1kA 29 :AKM T0506 139 :LPDT 1g1kA 34 :VGTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=22489 # 1m4jA.134.57 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)P140 (1m4jA)K64 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1m4jA 58 :LPLLED T0506 141 :DT 1m4jA 65 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=22491 1x89A expands to /projects/compbio/data/pdb/1x89.pdb.gz 1x89A:# 1x89A.134.97 read from T0506.t2k.many.frag # adding 1x89A to template set # found chain 1x89A in template set Warning: unaligning (T0506)S138 (1x89A)G102 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1x89A)T104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1x89A)S105 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :KLYL 1x89A 98 :KSYP T0506 139 :L 1x89A 103 :L T0506 142 :T 1x89A 106 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=22494 # 1kr7A.134.22 read from T0506.t2k.many.frag # found chain 1kr7A in training set T0506 134 :KLYLSLPDT 1kr7A 22 :QNKFGFKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22495 # 1kjqA.134.253 read from T0506.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0506)S138 (1kjqA)G259 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1kjqA)G262 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :KLYL 1kjqA 255 :VLAL T0506 139 :LP 1kjqA 260 :GY T0506 142 :T 1kjqA 263 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=22498 # 2f5uA.134.60 read from T0506.t2k.many.frag # found chain 2f5uA in template set Warning: unaligning (T0506)D141 (2f5uA)D201 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (2f5uA)G202 because L (left) conformation "forbidden" or filtered. T0506 134 :KLYLSLP 2f5uA 194 :TRSADFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22499 # 1tt8A.134.64 read from T0506.t2k.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)L139 (1tt8A)E70 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :KLYLS 1tt8A 65 :PLLPK T0506 140 :PDT 1tt8A 71 :SRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22501 # 1r71A.134.111 read from T0506.t2k.many.frag # found chain 1r71A in template set T0506 134 :KLYLSLPDT 1r71A 228 :EAWLDDDTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22502 # 1xhnA.135.143 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. T0506 135 :LYLSL 1xhnA 144 :TWPSS T0506 141 :DTR 1xhnA 150 :NWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22504 # 1fy7A.135.106 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 135 :LYLSLPDTR 1fy7A 264 :LYYDVDPFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22505 # 1vajA.135.125 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)P140 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0506 135 :LYLSL 1vajA 126 :RKIKV T0506 141 :DTR 1vajA 132 :RDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=22507 # 1vl7A.135.131 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 135 :LYLSL 1vl7A 120 :VLRGL T0506 141 :DTR 1vl7A 126 :DFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22509 # 1fm0D.135.43 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 135 :LYLSLPDTR 1fm0D 44 :LALEDGKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22510 # 2f1lA.135.46 read from T0506.t2k.many.frag # found chain 2f1lA in template set T0506 135 :LYLSLPDTR 2f1lA 35 :NLLDYRRWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22511 # 1lq9A.135.37 read from T0506.t2k.many.frag # found chain 1lq9A in training set Warning: unaligning (T0506)D141 (1lq9A)G45 because T (delta_L) conformation "forbidden" or filtered. T0506 135 :LYLSLP 1lq9A 39 :WIREVP T0506 142 :TR 1lq9A 46 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22513 # 1ne9A.135.220 read from T0506.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)P140 (1ne9A)D226 because G (3-10) conformation "forbidden" or filtered. T0506 135 :LYLSL 1ne9A 221 :AAFDA T0506 141 :DTR 1ne9A 227 :TMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22515 # 2bx6A.135.289 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)P140 (2bx6A)G295 because Y (epsilon') conformation "forbidden" or filtered. T0506 135 :LYLSL 2bx6A 290 :PLLNK T0506 141 :DTR 2bx6A 296 :PVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22517 # 1xdzA.135.63 read from T0506.t2k.many.frag # found chain 1xdzA in training set Warning: unaligning (T0506)R143 (1xdzA)N71 because G (3-10) conformation "forbidden" or filtered. T0506 135 :LYLSLPDT 1xdzA 63 :FYVDFNQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22518 # 1v58A.135.120 read from T0506.t2k.many.frag # found chain 1v58A in training set Warning: unaligning (T0506)P140 (1v58A)G126 because T (delta_L) conformation "forbidden" or filtered. T0506 135 :LYLSL 1v58A 121 :PWVDS T0506 141 :DTR 1v58A 127 :KVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=22520 # 1kjqA.135.254 read from T0506.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0506)S138 (1kjqA)G259 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1kjqA)G260 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1kjqA)G262 because Y (epsilon') conformation "forbidden" or filtered. T0506 135 :LYL 1kjqA 256 :LAL T0506 140 :P 1kjqA 261 :Y T0506 142 :TR 1kjqA 263 :LF Number of specific fragments extracted= 3 number of extra gaps= 2 total=22523 2b3nA expands to /projects/compbio/data/pdb/2b3n.pdb.gz 2b3nA:Skipped atom 125, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 126, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 130, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 131, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 133, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 134, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 146, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 158, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 260, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 365, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 369, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 371, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 375, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 377, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 684, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 735, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 859, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 865, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 867, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1017, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1058, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1060, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1102, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1245, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1249, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1251, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1253, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1262, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1264, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1266, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1268, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1270, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1272, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1274, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2b3nA # 2b3nA.135.113 read from T0506.t2k.many.frag # adding 2b3nA to template set # found chain 2b3nA in template set Warning: unaligning (T0506)P140 (2b3nA)G119 because T (delta_L) conformation "forbidden" or filtered. T0506 135 :LYLSL 2b3nA 114 :SPVRI T0506 141 :DTR 2b3nA 120 :DVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22525 # 1i4wA.135.170 read from T0506.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0506)P140 (1i4wA)G164 because S (epsilon) conformation "forbidden" or filtered. T0506 135 :LYLSL 1i4wA 159 :WLYRF T0506 141 :DTR 1i4wA 165 :KVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22527 # 1gttA.135.341 read from T0506.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 135 :LYLSL 1gttA 342 :AIPDP T0506 141 :DTR 1gttA 348 :NLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22529 # 1svb.135.189 read from T0506.t2k.many.frag # found chain 1svb in template set Warning: unaligning (T0506)S138 (1svb)D193 because P (beta_P) conformation "forbidden" or filtered. T0506 135 :LYL 1svb 190 :SGV T0506 139 :LPDTR 1svb 194 :LAQTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22531 2c5lC expands to /projects/compbio/data/pdb/2c5l.pdb.gz 2c5lC:Skipped atom 2872, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2876, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2878, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2880, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 2882, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3007, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3011, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3013, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3108, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3112, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3114, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3116, because occupancy 0.500 <= existing 0.500 in 2c5lC Skipped atom 3118, because occupancy 0.500 <= existing 0.500 in 2c5lC # 2c5lC.135.50 read from T0506.t2k.many.frag # adding 2c5lC to template set # found chain 2c5lC in template set T0506 135 :LYLSLPDTR 2c5lC 2180 :SNPNPSDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22532 # 1a7j.135.196 read from T0506.t2k.many.frag # found chain 1a7j in template set T0506 135 :LYLSLPDTR 1a7j 197 :PQFSQTDIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22533 # 1iow.135.180 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)P140 (1iow)P186 because C (cis) conformation "forbidden" or filtered. T0506 135 :LYLSL 1iow 181 :KWLSG T0506 141 :DTR 1iow 187 :EFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22535 1bli expands to /projects/compbio/data/pdb/1bli.pdb.gz 1bli:Warning: there is no chain 1bli will retry with 1bliA # 1bli.135.400 read from T0506.t2k.many.frag # adding 1bli to template set # found chain 1bli in template set T0506 135 :LYLSLPDTR 1bli 401 :DYFDHHDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22536 # 1a3aA.135.71 read from T0506.t2k.many.frag # found chain 1a3aA in training set Warning: unaligning (T0506)D141 (1a3aA)G78 because Y (epsilon') conformation "forbidden" or filtered. T0506 135 :LYLSLP 1a3aA 72 :DRVLKT T0506 142 :TR 1a3aA 79 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22538 # 1z6mA.135.54 read from T0506.t2k.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)P140 (1z6mA)G57 because T (delta_L) conformation "forbidden" or filtered. T0506 135 :LYLSL 1z6mA 52 :QSVKS T0506 141 :DTR 1z6mA 58 :KVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22540 # 1g1kA.135.28 read from T0506.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0506)L137 because of BadResidue code BAD_PEPTIDE in next template residue (1g1kA)N33 Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE at template residue (1g1kA)N33 Warning: unaligning (T0506)D141 (1g1kA)T36 because E (beta_S) conformation "forbidden" or filtered. T0506 135 :LY 1g1kA 30 :KM T0506 139 :LP 1g1kA 34 :VG T0506 142 :TR 1g1kA 37 :CN Number of specific fragments extracted= 3 number of extra gaps= 2 total=22543 # 1m4jA.135.58 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)P140 (1m4jA)K64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. T0506 135 :LYLSL 1m4jA 59 :PLLED T0506 141 :DT 1m4jA 65 :QP Number of specific fragments extracted= 2 number of extra gaps= 2 total=22545 # 1l3kA.135.35 read from T0506.t2k.many.frag # found chain 1l3kA in training set Warning: unaligning (T0506)L137 (1l3kA)G38 because Y (epsilon') conformation "forbidden" or filtered. T0506 135 :LY 1l3kA 36 :QW T0506 138 :SLPDTR 1l3kA 39 :TLTDCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22547 # 1pqhA.135.93 read from T0506.t2k.many.frag # found chain 1pqhA in training set Warning: unaligning (T0506)L135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pqhA)A79 Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pqhA)A79 Warning: unaligning (T0506)P140 (1pqhA)G82 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 1pqhA 80 :SV T0506 141 :DTR 1pqhA 83 :DIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22549 # 1rp4A.135.33 read from T0506.t2k.many.frag # found chain 1rp4A in template set T0506 135 :LYLSLPDTR 1rp4A 72 :ALLKSDFFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22550 1eyqA expands to /projects/compbio/data/pdb/1eyq.pdb.gz 1eyqA:# 1eyqA.135.82 read from T0506.t2k.many.frag # adding 1eyqA to template set # found chain 1eyqA in template set T0506 135 :LYLSLPDTR 1eyqA 83 :DIISGPFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22551 # 1w6sA.135.566 read from T0506.t2k.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)L137 (1w6sA)T569 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1w6sA)G572 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1w6sA)G573 because E (beta_S) conformation "forbidden" or filtered. T0506 135 :LY 1w6sA 567 :NY T0506 138 :SL 1w6sA 570 :QM T0506 142 :TR 1w6sA 574 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=22554 # 1f60A.135.389 read from T0506.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0506)P140 (1f60A)G395 because T (delta_L) conformation "forbidden" or filtered. T0506 135 :LYLSL 1f60A 390 :KFLKS T0506 141 :DTR 1f60A 396 :DAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22556 # 1fy7A.136.107 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 136 :YLSLPDTRL 1fy7A 265 :YYDVDPFLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22557 # 1xhnA.136.144 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 136 :YLSL 1xhnA 145 :WPSS T0506 142 :TRL 1xhnA 151 :WFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22559 # 1vl7A.136.132 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 136 :YLSL 1vl7A 121 :LRGL T0506 141 :DTRL 1vl7A 126 :DFRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22561 # 1vajA.136.126 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)Y136 (1vajA)K127 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 1vajA 128 :IKV T0506 141 :DTRL 1vajA 132 :RDGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=22563 # 2f1lA.136.47 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)S138 (2f1lA)D38 because G (3-10) conformation "forbidden" or filtered. T0506 136 :YL 2f1lA 36 :LL T0506 139 :LPDTRL 2f1lA 39 :YRRWTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22565 # 1ne9A.136.221 read from T0506.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)P140 (1ne9A)D226 because G (3-10) conformation "forbidden" or filtered. T0506 136 :YLSL 1ne9A 222 :AFDA T0506 141 :DTRL 1ne9A 227 :TMRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22567 # 2c5lC.136.51 read from T0506.t2k.many.frag # found chain 2c5lC in template set T0506 136 :YLSLPDTRL 2c5lC 2181 :NPNPSDYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22568 # 1g1kA.136.29 read from T0506.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0506)L137 because of BadResidue code BAD_PEPTIDE in next template residue (1g1kA)N33 Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE at template residue (1g1kA)N33 Warning: unaligning (T0506)L144 (1g1kA)F39 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :Y 1g1kA 31 :M T0506 139 :LPDTR 1g1kA 34 :VGTCN Number of specific fragments extracted= 2 number of extra gaps= 2 total=22570 # 1f60A.136.390 read from T0506.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0506)P140 (1f60A)G395 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YLSL 1f60A 391 :FLKS T0506 141 :DTRL 1f60A 396 :DAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22572 # 1lq9A.136.38 read from T0506.t2k.many.frag # found chain 1lq9A in training set Warning: unaligning (T0506)L144 (1lq9A)S48 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :YLSLPDTR 1lq9A 40 :IREVPGFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22573 # 2bx6A.136.290 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)P140 (2bx6A)G295 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (2bx6A)P296 because P (beta_P) conformation "forbidden" or filtered. T0506 136 :YLSL 2bx6A 291 :LLNK T0506 142 :TRL 2bx6A 297 :VIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22575 # 1gttA.136.342 read from T0506.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 136 :YLSL 1gttA 343 :IPDP T0506 141 :DTRL 1gttA 348 :NLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22577 # 1iow.136.181 read from T0506.t2k.many.frag # found chain 1iow in template set Warning: unaligning (T0506)L139 (1iow)G185 because S (epsilon) conformation "forbidden" or filtered. T0506 136 :YLS 1iow 182 :WLS T0506 140 :PDTRL 1iow 186 :PEFTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22579 # 1i4wA.136.171 read from T0506.t2k.many.frag # found chain 1i4wA in template set Warning: unaligning (T0506)R143 (1i4wA)K167 because P (beta_P) conformation "forbidden" or filtered. T0506 136 :YLSLPDT 1i4wA 160 :LYRFGKV T0506 144 :L 1i4wA 168 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=22581 # 2b3nA.136.114 read from T0506.t2k.many.frag # found chain 2b3nA in template set Warning: unaligning (T0506)P140 (2b3nA)G119 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YLSL 2b3nA 115 :PVRI T0506 141 :DTRL 2b3nA 120 :DVVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22583 1jb0D expands to /projects/compbio/data/pdb/1jb0.pdb.gz 1jb0D:# 1jb0D.136.73 read from T0506.t2k.many.frag # adding 1jb0D to template set # found chain 1jb0D in template set Warning: unaligning (T0506)S138 (1jb0D)K76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1jb0D)N78 because G (3-10) conformation "forbidden" or filtered. T0506 136 :YL 1jb0D 74 :PR T0506 139 :L 1jb0D 77 :I T0506 141 :DTRL 1jb0D 79 :DYKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=22586 2blkA expands to /projects/compbio/data/pdb/2blk.pdb.gz 2blkA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2blkA.136.103 read from T0506.t2k.many.frag # adding 2blkA to template set # found chain 2blkA in template set Warning: unaligning (T0506)P140 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YLSL 2blkA 104 :MYRQ T0506 141 :DTRL 2blkA 109 :KISF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22588 # 1svb.136.190 read from T0506.t2k.many.frag # found chain 1svb in template set T0506 136 :YLSLPDTRL 1svb 191 :GVDLAQTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22589 # 1bli.136.401 read from T0506.t2k.many.frag # found chain 1bli in template set T0506 136 :YLSLPDTRL 1bli 402 :YFDHHDIVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22590 # 1uasA.136.347 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)P140 (1uasA)H352 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YLSL 1uasA 348 :SVAP T0506 141 :DTRL 1uasA 353 :DCKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22592 # 1a7j.136.197 read from T0506.t2k.many.frag # found chain 1a7j in template set T0506 136 :YLSLPDTRL 1a7j 198 :QFSQTDINF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22593 # 1v7wA.136.123 read from T0506.t2k.many.frag # found chain 1v7wA in training set Warning: unaligning (T0506)P140 (1v7wA)E128 because E (beta_S) conformation "forbidden" or filtered. T0506 136 :YLSL 1v7wA 124 :VPKG T0506 141 :DTRL 1v7wA 129 :DAEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22595 # 1fm0D.136.44 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 136 :YLSLPDTRL 1fm0D 45 :ALEDGKLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22596 # 1v58A.136.121 read from T0506.t2k.many.frag # found chain 1v58A in training set Warning: unaligning (T0506)P140 (1v58A)G126 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YLSL 1v58A 122 :WVDS T0506 141 :DTRL 1v58A 127 :KVQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22598 # 1vlaA.136.75 read from T0506.t2k.many.frag # found chain 1vlaA in training set T0506 136 :YLSLPDTRL 1vlaA 64 :IDQMKDFRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22599 # 1x89A.136.99 read from T0506.t2k.many.frag # found chain 1x89A in template set Warning: unaligning (T0506)P140 (1x89A)T104 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1x89A)S105 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :YLSL 1x89A 100 :YPGL T0506 142 :TRL 1x89A 106 :YLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22601 # 1kjqA.136.255 read from T0506.t2k.many.frag # found chain 1kjqA in training set Warning: unaligning (T0506)S138 (1kjqA)G259 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1kjqA)G260 because S (epsilon) conformation "forbidden" or filtered. T0506 136 :YL 1kjqA 257 :AL T0506 140 :PDTRL 1kjqA 261 :YGLFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=22603 # 1eyqA.136.83 read from T0506.t2k.many.frag # found chain 1eyqA in template set Warning: unaligning (T0506)D141 (1eyqA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :YLSLP 1eyqA 84 :IISGP T0506 142 :TRL 1eyqA 90 :EKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22605 1cfb expands to /projects/compbio/data/pdb/1cfb.pdb.gz 1cfb:Warning: there is no chain 1cfb will retry with 1cfbA # 1cfb.136.131 read from T0506.t2k.many.frag # adding 1cfb to template set # found chain 1cfb in template set Warning: unaligning (T0506)Y136 (1cfb)E741 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1cfb)A744 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1cfb)N746 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :LS 1cfb 742 :HN T0506 140 :P 1cfb 745 :P T0506 142 :T 1cfb 747 :F T0506 144 :L 1cfb 749 :Y Number of specific fragments extracted= 4 number of extra gaps= 4 total=22609 # 1m4jA.136.59 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)P140 (1m4jA)K64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :YLSL 1m4jA 60 :LLED T0506 141 :DT 1m4jA 65 :QP T0506 144 :L 1m4jA 68 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=22612 # 1fy7A.137.108 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 137 :LSLPDTRLY 1fy7A 266 :YDVDPFLFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22613 # 1xhnA.137.145 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 137 :LSL 1xhnA 146 :PSS T0506 142 :TRLY 1xhnA 151 :WFFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22615 # 1vl7A.137.133 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 137 :LSL 1vl7A 122 :RGL T0506 141 :DTRLY 1vl7A 126 :DFRIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22617 # 1f60A.137.391 read from T0506.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0506)P140 (1f60A)G395 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 1f60A 392 :LKS T0506 141 :DTRLY 1f60A 396 :DAALV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22619 # 1uasA.137.348 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)P140 (1uasA)H352 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 1uasA 349 :VAP T0506 141 :DTRLY 1uasA 353 :DCKMY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22621 # 2c5lC.137.52 read from T0506.t2k.many.frag # found chain 2c5lC in template set T0506 137 :LSLPDTRLY 2c5lC 2182 :PNPSDYVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22622 1c8uA expands to /projects/compbio/data/pdb/1c8u.pdb.gz 1c8uA:# 1c8uA.137.237 read from T0506.t2k.many.frag # adding 1c8uA to template set # found chain 1c8uA in template set Warning: unaligning (T0506)L137 (1c8uA)F239 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SLPDTRLY 1c8uA 240 :NLNEWLLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=22623 # 2blkA.137.104 read from T0506.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)P140 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 2blkA 105 :YRQ T0506 141 :DTRLY 2blkA 109 :KISFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22625 # 1vajA.137.127 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)P140 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 1vajA 128 :IKV T0506 141 :DTRLY 1vajA 132 :RDGLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22627 1ia9A expands to /projects/compbio/data/pdb/1ia9.pdb.gz 1ia9A:# 1ia9A.137.68 read from T0506.t2k.many.frag # adding 1ia9A to template set # found chain 1ia9A in template set Warning: unaligning (T0506)L137 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ia9A)M1617 T0506 138 :SLPDTRLY 1ia9A 1618 :GGGLRRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22628 # 1v7wA.137.124 read from T0506.t2k.many.frag # found chain 1v7wA in training set Warning: unaligning (T0506)P140 (1v7wA)E128 because E (beta_S) conformation "forbidden" or filtered. T0506 137 :LSL 1v7wA 125 :PKG T0506 141 :DTRLY 1v7wA 129 :DAEIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=22630 # 1jb0D.137.74 read from T0506.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0506)S138 (1jb0D)K76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1jb0D)N78 because G (3-10) conformation "forbidden" or filtered. T0506 137 :L 1jb0D 75 :R T0506 139 :L 1jb0D 77 :I T0506 141 :DTRLY 1jb0D 79 :DYKIY Number of specific fragments extracted= 3 number of extra gaps= 2 total=22633 # 1ne9A.137.222 read from T0506.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)P140 (1ne9A)D226 because G (3-10) conformation "forbidden" or filtered. T0506 137 :LSL 1ne9A 223 :FDA T0506 141 :DTRLY 1ne9A 227 :TMRIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22635 # 1ty9A.137.176 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D141 (1ty9A)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :LSLP 1ty9A 177 :PRPE T0506 142 :T 1ty9A 182 :Y T0506 144 :LY 1ty9A 184 :VF Number of specific fragments extracted= 3 number of extra gaps= 2 total=22638 # 1t0tV.137.135 read from T0506.t2k.many.frag # found chain 1t0tV in training set T0506 137 :LSLPDTRLY 1t0tV 136 :PKTNYICFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22639 # 1bli.137.402 read from T0506.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0506)L144 (1bli)G410 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :LSLPDTR 1bli 403 :FDHHDIV T0506 145 :Y 1bli 411 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=22641 # 2b3nA.137.115 read from T0506.t2k.many.frag # found chain 2b3nA in template set Warning: unaligning (T0506)P140 (2b3nA)G119 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 2b3nA 116 :VRI T0506 141 :DTRLY 2b3nA 120 :DVVRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22643 # 1gttA.137.343 read from T0506.t2k.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 137 :LSL 1gttA 344 :PDP T0506 141 :DTRLY 1gttA 348 :NLTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22645 # 1vfjA.137.83 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)P140 (1vfjA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1vfjA)G89 because S (epsilon) conformation "forbidden" or filtered. T0506 137 :LSL 1vfjA 84 :GEV T0506 141 :D 1vfjA 88 :D T0506 143 :RLY 1vfjA 90 :KIF Number of specific fragments extracted= 3 number of extra gaps= 2 total=22648 # 1m4jA.137.60 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)S138 (1m4jA)E62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1m4jA)K64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :L 1m4jA 61 :L T0506 139 :L 1m4jA 63 :D T0506 141 :DT 1m4jA 65 :QP T0506 144 :LY 1m4jA 68 :YV Number of specific fragments extracted= 4 number of extra gaps= 3 total=22652 # 2bx6A.137.291 read from T0506.t2k.many.frag # found chain 2bx6A in template set Warning: unaligning (T0506)P140 (2bx6A)G295 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :LSL 2bx6A 292 :LNK T0506 141 :DTRLY 2bx6A 296 :PVIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22654 # 1uc2A.137.197 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)S138 (1uc2A)G199 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :L 1uc2A 198 :L T0506 140 :PDT 1uc2A 201 :GNH T0506 144 :LY 1uc2A 205 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=22657 # 1g1kA.137.30 read from T0506.t2k.many.frag # found chain 1g1kA in template set Warning: unaligning (T0506)L137 because of BadResidue code BAD_PEPTIDE in next template residue (1g1kA)N33 Warning: unaligning (T0506)S138 because of BadResidue code BAD_PEPTIDE at template residue (1g1kA)N33 T0506 139 :LPDTRLY 1g1kA 34 :VGTCNFY Number of specific fragments extracted= 1 number of extra gaps= 1 total=22658 # 2bh1A.137.90 read from T0506.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0506)L137 (2bh1A)Q91 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (2bh1A)H97 because P (beta_P) conformation "forbidden" or filtered. T0506 138 :SLPDT 2bh1A 92 :DVEDV T0506 144 :LY 2bh1A 98 :FC Number of specific fragments extracted= 2 number of extra gaps= 2 total=22660 # 1ow1A.137.98 read from T0506.t2k.many.frag # found chain 1ow1A in training set T0506 137 :LSLPDTRLY 1ow1A 3568 :TVETDYCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22661 # 1svb.137.191 read from T0506.t2k.many.frag # found chain 1svb in template set T0506 137 :LSLPDTRLY 1svb 192 :VDLAQTVIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22662 # 2f1lA.137.48 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)D141 (2f1lA)R41 because D (zeta) conformation "forbidden" or filtered. T0506 137 :LSLP 2f1lA 37 :LDYR T0506 142 :TRLY 2f1lA 42 :WTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22664 # 1wkqA.137.76 read from T0506.t2k.many.frag # found chain 1wkqA in training set T0506 137 :LSLPDTRLY 1wkqA 69 :YQLDDCILY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22665 # 1v58A.137.122 read from T0506.t2k.many.frag # found chain 1v58A in training set Warning: unaligning (T0506)P140 (1v58A)G126 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 1v58A 123 :VDS T0506 141 :DTRLY 1v58A 127 :KVQLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22667 # 1l3lA.137.31 read from T0506.t2k.many.frag # found chain 1l3lA in training set Warning: unaligning (T0506)D141 (1l3lA)G36 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :LSLP 1l3lA 32 :FGFT T0506 142 :TRLY 1l3lA 37 :YAYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22669 # 1vl7A.138.134 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1vl7A)R128 because P (beta_P) conformation "forbidden" or filtered. T0506 138 :SL 1vl7A 123 :GL T0506 141 :DT 1vl7A 126 :DF T0506 144 :LYR 1vl7A 129 :IFQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=22672 # 1xhnA.138.146 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 138 :SL 1xhnA 147 :SS T0506 142 :TRLYR 1xhnA 151 :WFFAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22674 # 1fy7A.138.109 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 138 :SLPDTRLYR 1fy7A 267 :DVDPFLFYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22675 # 1c8uA.138.238 read from T0506.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0506)S138 (1c8uA)N240 because D (zeta) conformation "forbidden" or filtered. T0506 139 :LPDTRLYR 1c8uA 241 :LNEWLLYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=22676 # 1f60A.138.392 read from T0506.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0506)P140 (1f60A)G395 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 1f60A 393 :KS T0506 141 :DTRLYR 1f60A 396 :DAALVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22678 # 1uasA.138.349 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)S138 (1uasA)A350 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1uasA)H352 because T (delta_L) conformation "forbidden" or filtered. T0506 139 :L 1uasA 351 :P T0506 141 :DTRLYR 1uasA 353 :DCKMYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=22680 # 2c5lC.138.53 read from T0506.t2k.many.frag # found chain 2c5lC in template set T0506 138 :SLPDTRLYR 2c5lC 2183 :NPSDYVLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22681 # 1uc2A.138.198 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R143 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R146 (1uc2A)V207 because P (beta_P) conformation "forbidden" or filtered. T0506 138 :SLPDT 1uc2A 199 :GSGNH T0506 144 :LY 1uc2A 205 :LE Number of specific fragments extracted= 2 number of extra gaps= 2 total=22683 # 1ty9A.138.177 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D141 (1ty9A)G181 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SLP 1ty9A 178 :RPE T0506 142 :TRLYR 1ty9A 182 :YCVFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22685 # 2blkA.138.105 read from T0506.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)P140 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 2blkA 106 :RQ T0506 141 :DTRLYR 2blkA 109 :KISFYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22687 # 1bli.138.403 read from T0506.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0506)L144 (1bli)G410 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SLPDTR 1bli 404 :DHHDIV T0506 145 :YR 1bli 411 :WT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22689 # 1ia9A.138.69 read from T0506.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0506)L139 (1ia9A)G1619 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :S 1ia9A 1618 :G T0506 140 :PDTRLYR 1ia9A 1620 :GLRRAVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22691 # 2asfA.138.112 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 138 :SLPDTRLYR 2asfA 113 :PNPRRVVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22692 # 2b3nA.138.116 read from T0506.t2k.many.frag # found chain 2b3nA in template set Warning: unaligning (T0506)P140 (2b3nA)G119 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 2b3nA 117 :RI T0506 141 :DTRLYR 2b3nA 120 :DVVRVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22694 # 2bh1A.138.91 read from T0506.t2k.many.frag # found chain 2bh1A in template set T0506 138 :SLPDTRLYR 2bh1A 92 :DVEDVHFCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22695 # 1uscA.138.126 read from T0506.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)P140 (1uscA)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 138 :SL 1uscA 127 :TF T0506 141 :DTRLYR 1uscA 130 :DHDLFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22697 # 1v7wA.138.125 read from T0506.t2k.many.frag # found chain 1v7wA in training set Warning: unaligning (T0506)L139 (1v7wA)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1v7wA)E128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1v7wA)A130 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :S 1v7wA 126 :K T0506 141 :D 1v7wA 129 :D T0506 143 :RLYR 1v7wA 131 :EIWD Number of specific fragments extracted= 3 number of extra gaps= 2 total=22700 # 1vfjA.138.84 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)P140 (1vfjA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1vfjA)G89 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1vfjA)K90 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SL 1vfjA 85 :EV T0506 141 :D 1vfjA 88 :D T0506 144 :LYR 1vfjA 91 :IFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=22703 # 1vpsA.138.242 read from T0506.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)P140 (1vpsA)E276 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 1vpsA 274 :KG T0506 141 :DTRLYR 1vpsA 277 :GLYLSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=22705 # 1t0tV.138.136 read from T0506.t2k.many.frag # found chain 1t0tV in training set T0506 138 :SLPDTRLYR 1t0tV 137 :KTNYICFYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22706 # 1m4jA.138.61 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)S138 (1m4jA)E62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1m4jA)K64 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1m4jA 63 :D T0506 141 :DTRLYR 1m4jA 65 :QPCYVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=22708 # 1qqqA.138.142 read from T0506.t2k.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)H147 Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 138 :SL 1qqqA 143 :LA T0506 143 :RLYR 1qqqA 148 :AFFQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=22710 Number of alignments=2014 # 1ne9A.138.223 read from T0506.t2k.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)P140 (1ne9A)D226 because G (3-10) conformation "forbidden" or filtered. T0506 138 :SL 1ne9A 224 :DA T0506 141 :DTRLYR 1ne9A 227 :TMRIFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22712 # 1jb0D.138.75 read from T0506.t2k.many.frag # found chain 1jb0D in template set Warning: unaligning (T0506)S138 (1jb0D)K76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1jb0D)N78 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1jb0D 77 :I T0506 141 :DTRLYR 1jb0D 79 :DYKIYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=22714 # 1vajA.138.128 read from T0506.t2k.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)P140 (1vajA)G131 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 1vajA 129 :KV T0506 141 :DTRLYR 1vajA 132 :RDGLIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22716 # 1vj2A.138.43 read from T0506.t2k.many.frag # found chain 1vj2A in training set Warning: unaligning (T0506)S138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj2A)A33 Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj2A)A33 T0506 140 :PDTRLYR 1vj2A 34 :PNFVMRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22717 1wmiA expands to /projects/compbio/data/pdb/1wmi.pdb.gz 1wmiA:# 1wmiA.138.49 read from T0506.t2k.many.frag # adding 1wmiA to template set # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 1wmiA 50 :GT T0506 141 :DTRLYR 1wmiA 53 :DLDLYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22719 # 1eyqA.138.85 read from T0506.t2k.many.frag # found chain 1eyqA in template set Warning: unaligning (T0506)D141 (1eyqA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SLP 1eyqA 86 :SGP T0506 142 :TRLYR 1eyqA 90 :EKLIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22721 # 1svb.138.192 read from T0506.t2k.many.frag # found chain 1svb in template set T0506 138 :SLPDTRLYR 1svb 193 :DLAQTVILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22722 # 1jb3A.138.28 read from T0506.t2k.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)P140 (1jb3A)H32 because G (3-10) conformation "forbidden" or filtered. T0506 138 :SL 1jb3A 30 :PV T0506 141 :DTRLYR 1jb3A 33 :HTYSCK Number of specific fragments extracted= 2 number of extra gaps= 1 total=22724 # 1vl7A.139.135 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 139 :L 1vl7A 124 :L T0506 141 :DTRLYRL 1vl7A 126 :DFRIFQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22726 # 1xhnA.139.147 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1xhnA 148 :S T0506 141 :DTRLYRL 1xhnA 150 :NWFFAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22728 # 1c8uA.139.239 read from T0506.t2k.many.frag # found chain 1c8uA in template set T0506 139 :LPDTRLYRL 1c8uA 241 :LNEWLLYSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22729 # 1uc2A.139.199 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)L139 (1uc2A)S200 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1uc2A)G201 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1uc2A 202 :NH T0506 144 :LYRL 1uc2A 205 :LEVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=22731 # 1fy7A.139.110 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 139 :LPDTRLYRL 1fy7A 268 :VDPFLFYCM Number of specific fragments extracted= 1 number of extra gaps= 0 total=22732 # 1f60A.139.393 read from T0506.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0506)P140 (1f60A)G395 because T (delta_L) conformation "forbidden" or filtered. T0506 139 :L 1f60A 394 :S T0506 141 :DTRLYRL 1f60A 396 :DAALVKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22734 # 1uasA.139.350 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)P140 (1uasA)H352 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1uasA)C354 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :L 1uasA 351 :P T0506 141 :D 1uasA 353 :D T0506 143 :RLYRL 1uasA 355 :KMYVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22737 # 2c5lC.139.54 read from T0506.t2k.many.frag # found chain 2c5lC in template set T0506 139 :LPDTRLYRL 2c5lC 2184 :PSDYVLLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22738 # 2asfA.139.113 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 139 :LPDTRLYRL 2asfA 114 :NPRRVVIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22739 # 1ty9A.139.178 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :LPDT 1ty9A 179 :PEGY T0506 144 :LYRL 1ty9A 184 :VFEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22741 # 1uscA.139.127 read from T0506.t2k.many.frag # found chain 1uscA in training set T0506 139 :LPDTRLYRL 1uscA 128 :FGDHDLFVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22742 1ahsA expands to /projects/compbio/data/pdb/1ahs.pdb.gz 1ahsA:# 1ahsA.139.111 read from T0506.t2k.many.frag # adding 1ahsA to template set # found chain 1ahsA in template set Warning: unaligning (T0506)P140 (1ahsA)A238 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1ahsA 237 :G T0506 141 :DTRLYRL 1ahsA 239 :RRSILQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=22744 # 1ia9A.139.70 read from T0506.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0506)L139 (1ia9A)G1619 because Y (epsilon') conformation "forbidden" or filtered. T0506 140 :PDTRLYRL 1ia9A 1620 :GLRRAVKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22745 # 1m4jA.139.62 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)P140 (1m4jA)K64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :L 1m4jA 63 :D T0506 141 :DT 1m4jA 65 :QP T0506 144 :LYRL 1m4jA 68 :YVLF Number of specific fragments extracted= 3 number of extra gaps= 2 total=22748 # 1qqqA.139.143 read from T0506.t2k.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)H147 Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 139 :L 1qqqA 144 :A T0506 143 :RLYRL 1qqqA 148 :AFFQF Number of specific fragments extracted= 2 number of extra gaps= 0 total=22750 Number of alignments=2015 # 2blkA.139.106 read from T0506.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)P140 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 139 :L 2blkA 107 :Q T0506 141 :DTRLYRL 2blkA 109 :KISFYEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22752 # 1jb3A.139.29 read from T0506.t2k.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)P140 (1jb3A)H32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1jb3A)H33 because L (left) conformation "forbidden" or filtered. T0506 139 :L 1jb3A 31 :V T0506 142 :TRLYRL 1jb3A 34 :TYSCKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22754 # 1wlfA.139.144 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)P140 (1wlfA)D148 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :L 1wlfA 147 :V T0506 141 :DTRLYRL 1wlfA 149 :QQTYIFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22756 # 1wmiA.139.50 read from T0506.t2k.many.frag # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 139 :L 1wmiA 51 :T T0506 141 :DTRLYRL 1wmiA 53 :DLDLYRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22758 # 2bh1A.139.92 read from T0506.t2k.many.frag # found chain 2bh1A in template set T0506 139 :LPDTRLYRL 2bh1A 93 :VEDVHFCVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22759 # 1vfjA.139.85 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)P140 (1vfjA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1vfjA)K90 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :L 1vfjA 86 :V T0506 141 :DT 1vfjA 88 :DG T0506 144 :LYRL 1vfjA 91 :IFVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22762 # 2biwA.139.341 read from T0506.t2k.many.frag # found chain 2biwA in template set T0506 139 :LPDTRLYRL 2biwA 342 :LDPGQLWRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=22763 # 1bli.139.404 read from T0506.t2k.many.frag # found chain 1bli in template set Warning: unaligning (T0506)L144 (1bli)G410 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y145 (1bli)W411 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :LPDTR 1bli 405 :HHDIV T0506 146 :RL 1bli 412 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=22765 1qyrA expands to /projects/compbio/data/pdb/1qyr.pdb.gz 1qyrA:# 1qyrA.139.169 read from T0506.t2k.many.frag # adding 1qyrA to template set # found chain 1qyrA in template set Warning: unaligning (T0506)P140 (1qyrA)V187 because E (beta_S) conformation "forbidden" or filtered. T0506 139 :L 1qyrA 186 :K T0506 141 :DTRLYRL 1qyrA 188 :DSAVVRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22767 # 2furA.139.146 read from T0506.t2k.many.frag # found chain 2furA in template set T0506 139 :LPDTRLYRL 2furA 146 :LNGVFVFAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22768 # 1v7wA.139.126 read from T0506.t2k.many.frag # found chain 1v7wA in training set Warning: unaligning (T0506)L139 (1v7wA)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1v7wA)E128 because E (beta_S) conformation "forbidden" or filtered. T0506 141 :DTRLYRL 1v7wA 129 :DAEIWDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22769 # 1ok7A.139.153 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)P140 (1ok7A)L155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1ok7A)G157 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :L 1ok7A 154 :Y T0506 141 :D 1ok7A 156 :N T0506 143 :RLYRL 1ok7A 158 :MLFET Number of specific fragments extracted= 3 number of extra gaps= 2 total=22772 # 1pjxA.139.194 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)L139 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1pjxA)T195 Warning: unaligning (T0506)T142 (1pjxA)K198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1pjxA)L200 Warning: unaligning (T0506)L144 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1pjxA)L200 T0506 140 :PD 1pjxA 196 :PT T0506 145 :YRL 1pjxA 201 :WSY Number of specific fragments extracted= 2 number of extra gaps= 2 total=22774 # 1vpsA.139.243 read from T0506.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)P140 (1vpsA)E276 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1vpsA)G277 because E (beta_S) conformation "forbidden" or filtered. T0506 139 :L 1vpsA 275 :G T0506 142 :TRLYRL 1vpsA 278 :LYLSCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22776 1ut7A expands to /projects/compbio/data/pdb/1ut7.pdb.gz 1ut7A:Skipped atom 256, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 268, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 270, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 272, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 276, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 1ut7A Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 1ut7A # 1ut7A.139.153 read from T0506.t2k.many.frag # adding 1ut7A to template set # found chain 1ut7A in template set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ut7A)D152 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)V155 Warning: unaligning (T0506)R143 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)V155 T0506 141 :D 1ut7A 153 :D T0506 144 :LYRL 1ut7A 156 :LCRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22778 # 1vl7A.140.136 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1vl7A 126 :DFRIFQLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=22779 # 1xhnA.140.148 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 142 :TRLYRLR 1xhnA 151 :WFFAKLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=22780 # 1c8uA.140.240 read from T0506.t2k.many.frag # found chain 1c8uA in template set T0506 140 :PDTRLYRLR 1c8uA 242 :NEWLLYSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22781 # 1uc2A.140.200 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)P140 (1uc2A)G201 because S (epsilon) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1uc2A 202 :NHFLEVQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22782 # 1uasA.140.351 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)P140 (1uasA)H352 because T (delta_L) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1uasA 353 :DCKMYVLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=22783 # 1ty9A.140.179 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D141 (1ty9A)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 T0506 140 :P 1ty9A 180 :E T0506 142 :TRLYRL 1ty9A 182 :YCVFEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=22785 # 1f60A.140.394 read from T0506.t2k.many.frag # found chain 1f60A in training set Warning: unaligning (T0506)P140 (1f60A)G395 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R146 (1f60A)K401 because P (beta_P) conformation "forbidden" or filtered. T0506 141 :DTRLY 1f60A 396 :DAALV T0506 147 :LR 1f60A 402 :FV Number of specific fragments extracted= 2 number of extra gaps= 2 total=22787 # 1fy7A.140.111 read from T0506.t2k.many.frag # found chain 1fy7A in template set Warning: unaligning (T0506)R146 (1fy7A)C275 because P (beta_P) conformation "forbidden" or filtered. T0506 140 :PDTRLY 1fy7A 269 :DPFLFY T0506 147 :LR 1fy7A 276 :MT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22789 # 2c5lC.140.55 read from T0506.t2k.many.frag # found chain 2c5lC in template set T0506 140 :PDTRLYRLR 2c5lC 2185 :SDYVLLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22790 # 1uscA.140.128 read from T0506.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)P140 (1uscA)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1uscA 130 :DHDLFVGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22791 # 1ia9A.140.71 read from T0506.t2k.many.frag # found chain 1ia9A in template set T0506 140 :PDTRLYRLR 1ia9A 1620 :GLRRAVKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22792 # 1qqqA.140.144 read from T0506.t2k.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)H147 Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 143 :RLYRLR 1qqqA 148 :AFFQFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22793 # 1ahsA.140.112 read from T0506.t2k.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)P140 (1ahsA)A238 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1ahsA)R239 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :TRLYRLR 1ahsA 240 :RSILQFE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22794 # 2asfA.140.114 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 140 :PDTRLYRLR 2asfA 115 :PRRVVIEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22795 # 1jb3A.140.30 read from T0506.t2k.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)P140 (1jb3A)H32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1jb3A)H33 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 (1jb3A)R40 because P (beta_P) conformation "forbidden" or filtered. T0506 142 :TRLYRL 1jb3A 34 :TYSCKV Number of specific fragments extracted= 1 number of extra gaps= 2 total=22796 # 1m4jA.140.63 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)P140 (1m4jA)K64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1m4jA 65 :QP T0506 144 :LYRLR 1m4jA 68 :YVLFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=22798 # 2blkA.140.107 read from T0506.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)P140 (2blkA)G108 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 (2blkA)W116 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DTRLYRL 2blkA 109 :KISFYEV Number of specific fragments extracted= 1 number of extra gaps= 2 total=22799 # 1wlfA.140.145 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)P140 (1wlfA)D148 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1wlfA 149 :QQTYIFIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=22800 # 1wubA.140.74 read from T0506.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0506)T142 (1wubA)Y77 because D (zeta) conformation "forbidden" or filtered. T0506 140 :PD 1wubA 75 :EQ T0506 143 :RLYRLR 1wubA 78 :PEIRFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22802 # 2furA.140.147 read from T0506.t2k.many.frag # found chain 2furA in template set T0506 140 :PDTRLYRLR 2furA 147 :NGVFVFAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22803 # 1vpsA.140.244 read from T0506.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)P140 (1vpsA)E276 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1vpsA)G277 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R146 (1vpsA)C282 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :TRLY 1vpsA 278 :LYLS T0506 147 :LR 1vpsA 283 :VD Number of specific fragments extracted= 2 number of extra gaps= 2 total=22805 # 1wmiA.140.51 read from T0506.t2k.many.frag # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1wmiA 53 :DLDLYRAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=22806 # 1v7wA.140.127 read from T0506.t2k.many.frag # found chain 1v7wA in training set Warning: unaligning (T0506)P140 (1v7wA)E128 because E (beta_S) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1v7wA 129 :DAEIWDVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22807 # 1qyrA.140.170 read from T0506.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0506)P140 (1qyrA)V187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1qyrA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1qyrA 188 :DS T0506 144 :LYRLR 1qyrA 191 :VVRLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=22809 # 2biwA.140.342 read from T0506.t2k.many.frag # found chain 2biwA in template set Warning: unaligning (T0506)D141 (2biwA)P344 because P (beta_P) conformation "forbidden" or filtered. T0506 140 :P 2biwA 343 :D T0506 142 :TRLYRLR 2biwA 345 :GQLWRFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22811 # 1vfjA.140.86 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)P140 (1vfjA)G87 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1vfjA)G89 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1vfjA)K90 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :D 1vfjA 88 :D T0506 144 :LYRLR 1vfjA 91 :IFVLP Number of specific fragments extracted= 2 number of extra gaps= 2 total=22813 # 2bh1A.140.93 read from T0506.t2k.many.frag # found chain 2bh1A in template set Warning: unaligning (T0506)R148 (2bh1A)S102 because Y (epsilon') conformation "forbidden" or filtered. T0506 140 :PDTRLYRL 2bh1A 94 :EDVHFCVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=22814 # 1ut7A.140.154 read from T0506.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ut7A)D152 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)V155 Warning: unaligning (T0506)R143 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)V155 Warning: unaligning (T0506)R148 (1ut7A)Y160 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :D 1ut7A 153 :D T0506 144 :LYRL 1ut7A 156 :LCRI Number of specific fragments extracted= 2 number of extra gaps= 2 total=22816 # 1ok7A.140.154 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)P140 (1ok7A)L155 because G (3-10) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1ok7A 156 :NGMLFETE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22817 # 1pjxA.140.195 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1pjxA)L200 Warning: unaligning (T0506)L144 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1pjxA)L200 T0506 140 :PDT 1pjxA 196 :PTK T0506 145 :YRLR 1pjxA 201 :WSYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22819 # 1vl7A.141.137 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 141 :DTRLYRLRT 1vl7A 126 :DFRIFQLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22820 # 1xhnA.141.149 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 142 :TRLYRLRT 1xhnA 151 :WFFAKLNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=22821 # 1c8uA.141.241 read from T0506.t2k.many.frag # found chain 1c8uA in template set T0506 141 :DTRLYRLRT 1c8uA 243 :EWLLYSVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=22822 # 1ty9A.141.180 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D141 (1ty9A)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 142 :TRLYRL 1ty9A 182 :YCVFEL Number of specific fragments extracted= 1 number of extra gaps= 2 total=22823 # 1uc2A.141.201 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R143 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1uc2A 202 :NH T0506 144 :LYRLRT 1uc2A 205 :LEVQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22825 # 1jb3A.141.31 read from T0506.t2k.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)D141 (1jb3A)H33 because L (left) conformation "forbidden" or filtered. T0506 142 :TRLYRLRT 1jb3A 34 :TYSCKVRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22826 # 1ia9A.141.72 read from T0506.t2k.many.frag # found chain 1ia9A in template set T0506 141 :DTRLYRLRT 1ia9A 1621 :LRRAVKVLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=22827 # 1f60A.141.395 read from T0506.t2k.many.frag # found chain 1f60A in training set T0506 141 :DTRLYRLRT 1f60A 396 :DAALVKFVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22828 # 1ahsA.141.113 read from T0506.t2k.many.frag # found chain 1ahsA in template set T0506 141 :DTRLYRLRT 1ahsA 239 :RRSILQFEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22829 # 1uasA.141.352 read from T0506.t2k.many.frag # found chain 1uasA in training set T0506 141 :DTRLYRLRT 1uasA 353 :DCKMYVLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22830 # 2asfA.141.115 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 141 :DTRLYRLRT 2asfA 116 :RRVVIEVQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22831 # 1uscA.141.129 read from T0506.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)R148 (1uscA)R137 because P (beta_P) conformation "forbidden" or filtered. T0506 141 :DTRLYRL 1uscA 130 :DHDLFVG T0506 149 :T 1uscA 138 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22833 # 1qqqA.141.145 read from T0506.t2k.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 143 :RLYRLRT 1qqqA 148 :AFFQFYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22834 # 2c5lC.141.56 read from T0506.t2k.many.frag # found chain 2c5lC in template set T0506 141 :DTRLYRLRT 2c5lC 2186 :DYVLLEEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22835 # 1wubA.141.75 read from T0506.t2k.many.frag # found chain 1wubA in training set T0506 141 :DTRLYRLRT 1wubA 76 :QYPEIRFVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22836 # 2furA.141.148 read from T0506.t2k.many.frag # found chain 2furA in template set T0506 141 :DTRLYRLRT 2furA 148 :GVFVFAVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22837 # 1qyrA.141.171 read from T0506.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0506)R143 (1qyrA)A190 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 (1qyrA)V195 because D (zeta) conformation "forbidden" or filtered. T0506 141 :DT 1qyrA 188 :DS T0506 144 :LYRL 1qyrA 191 :VVRL T0506 149 :T 1qyrA 196 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=22840 # 1m4jA.141.64 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1m4jA 65 :QP T0506 144 :LYRLRT 1m4jA 68 :YVLFRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22842 # 2blkA.141.108 read from T0506.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)R148 (2blkA)W116 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DTRLYRL 2blkA 109 :KISFYEV T0506 149 :T 2blkA 117 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=22844 # 1nlfA.141.229 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DTRLYRL 1nlfA 230 :RRFFVRF T0506 149 :T 1nlfA 238 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=22846 # 1ok7A.141.155 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 141 :DTRLYRLRT 1ok7A 156 :NGMLFETEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22847 # 1wlfA.141.146 read from T0506.t2k.many.frag # found chain 1wlfA in template set T0506 141 :DTRLYRLRT 1wlfA 149 :QQTYIFIQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22848 # 1fy7A.141.112 read from T0506.t2k.many.frag # found chain 1fy7A in template set T0506 141 :DTRLYRLRT 1fy7A 270 :PFLFYCMTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22849 # 1vpsA.141.245 read from T0506.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)R146 (1vpsA)C282 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DTRLY 1vpsA 277 :GLYLS T0506 147 :LRT 1vpsA 283 :VDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22851 # 1ut7A.141.155 read from T0506.t2k.many.frag # found chain 1ut7A in template set Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE in next template residue (1ut7A)V155 Warning: unaligning (T0506)R143 because of BadResidue code BAD_PEPTIDE at template residue (1ut7A)V155 Warning: unaligning (T0506)R146 (1ut7A)R158 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 (1ut7A)Y160 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :D 1ut7A 153 :D T0506 144 :LY 1ut7A 156 :LC T0506 147 :L 1ut7A 159 :I T0506 149 :T 1ut7A 161 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=22855 # 1t0tV.141.139 read from T0506.t2k.many.frag # found chain 1t0tV in training set T0506 141 :DTRLYRLRT 1t0tV 140 :YICFYPMDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22856 # 1v7wA.141.128 read from T0506.t2k.many.frag # found chain 1v7wA in training set T0506 141 :DTRLYRLRT 1v7wA 129 :DAEIWDVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22857 # 2biwA.141.343 read from T0506.t2k.many.frag # found chain 2biwA in template set T0506 141 :DTRLYRLRT 2biwA 344 :PGQLWRFTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22858 # 1wmiA.141.52 read from T0506.t2k.many.frag # found chain 1wmiA in template set T0506 141 :DTRLYRLRT 1wmiA 53 :DLDLYRARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22859 # 1vfjA.141.87 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)T142 (1vfjA)G89 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1vfjA)K90 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :D 1vfjA 88 :D T0506 144 :LYRLRT 1vfjA 91 :IFVLPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22861 # 1vl7A.142.138 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 142 :TRLYRLRTE 1vl7A 127 :FRIFQLTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22862 # 1xhnA.142.150 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 142 :TRLYRLRTE 1xhnA 151 :WFFAKLNIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22863 # 1c8uA.142.242 read from T0506.t2k.many.frag # found chain 1c8uA in template set T0506 142 :TRLYRLRTE 1c8uA 244 :WLLYSVEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=22864 # 1ty9A.142.181 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 142 :T 1ty9A 182 :Y T0506 144 :LYRL 1ty9A 184 :VFEL T0506 150 :E 1ty9A 190 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=22867 # 1jb3A.142.32 read from T0506.t2k.many.frag # found chain 1jb3A in training set T0506 142 :TRLYRLRTE 1jb3A 34 :TYSCKVRVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22868 # 1uc2A.142.202 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R143 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :T 1uc2A 203 :H T0506 144 :LYRLRTE 1uc2A 205 :LEVQVVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22870 # 1ia9A.142.73 read from T0506.t2k.many.frag # found chain 1ia9A in template set T0506 142 :TRLYRLRTE 1ia9A 1622 :RRAVKVLCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22871 # 2asfA.142.116 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 142 :TRLYRLRTE 2asfA 117 :RVVIEVQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22872 # 1ahsA.142.114 read from T0506.t2k.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)R143 (1ahsA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :T 1ahsA 240 :R T0506 144 :LYRLRTE 1ahsA 242 :ILQFEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22874 # 1f60A.142.396 read from T0506.t2k.many.frag # found chain 1f60A in training set T0506 142 :TRLYRLRTE 1f60A 397 :AALVKFVPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22875 # 1uasA.142.353 read from T0506.t2k.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)E150 because last residue in template chain is (1uasA)N362 T0506 142 :TRLYRLRT 1uasA 354 :CKMYVLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22876 # 1uscA.142.130 read from T0506.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)R148 (1uscA)R137 because P (beta_P) conformation "forbidden" or filtered. T0506 142 :TRLYRL 1uscA 131 :HDLFVG T0506 149 :TE 1uscA 138 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22878 # 2furA.142.149 read from T0506.t2k.many.frag # found chain 2furA in template set T0506 142 :TRLYRLRTE 2furA 149 :VFVFAVKPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22879 # 1nlfA.142.230 read from T0506.t2k.many.frag # found chain 1nlfA in template set T0506 142 :TRLYRLRTE 1nlfA 231 :RFFVRFGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22880 # 1wlfA.142.147 read from T0506.t2k.many.frag # found chain 1wlfA in template set T0506 142 :TRLYRLRTE 1wlfA 150 :QTYIFIQIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22881 # 1wubA.142.76 read from T0506.t2k.many.frag # found chain 1wubA in training set T0506 142 :TRLYRLRTE 1wubA 77 :YPEIRFVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=22882 # 1m4jA.142.65 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :T 1m4jA 66 :P T0506 144 :LYRLRTE 1m4jA 68 :YVLFRLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=22884 # 1qqqA.142.146 read from T0506.t2k.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 143 :RLYRLRTE 1qqqA 148 :AFFQFYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22885 # 1ok7A.142.156 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 142 :TRLYRLRTE 1ok7A 157 :GMLFETEGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22886 # 1d7pM.142.132 read from T0506.t2k.many.frag # found chain 1d7pM in training set T0506 142 :TRLYRLRTE 1d7pM 2303 :TRYLRIHPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22887 # 1qyrA.142.172 read from T0506.t2k.many.frag # found chain 1qyrA in template set Warning: unaligning (T0506)R143 (1qyrA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :T 1qyrA 189 :S T0506 144 :LYRLRTE 1qyrA 191 :VVRLVPH Number of specific fragments extracted= 2 number of extra gaps= 1 total=22889 # 1vpsA.142.246 read from T0506.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)R146 (1vpsA)C282 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 (1vpsA)D284 because D (zeta) conformation "forbidden" or filtered. T0506 142 :TRLY 1vpsA 278 :LYLS T0506 147 :L 1vpsA 283 :V T0506 149 :TE 1vpsA 285 :IM Number of specific fragments extracted= 3 number of extra gaps= 2 total=22892 # 2c5lC.142.57 read from T0506.t2k.many.frag # found chain 2c5lC in template set Warning: unaligning (T0506)E150 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (2c5lC)D2196 T0506 142 :TRLYRLRT 2c5lC 2187 :YVLLEEVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22893 # 1u5xA.142.4 read from T0506.t2k.many.frag # found chain 1u5xA in training set T0506 142 :TRLYRLRTE 1u5xA 106 :HSVLHLVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22894 # 1t0tV.142.140 read from T0506.t2k.many.frag # found chain 1t0tV in training set Warning: unaligning (T0506)E150 (1t0tV)R149 because P (beta_P) conformation "forbidden" or filtered. T0506 142 :TRLYRLRT 1t0tV 141 :ICFYPMDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22895 # 1pjxA.142.197 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)T142 (1pjxA)K198 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1pjxA)L200 Warning: unaligning (T0506)L144 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1pjxA)L200 Warning: unaligning (T0506)R148 (1pjxA)D204 because P (beta_P) conformation "forbidden" or filtered. T0506 145 :YRL 1pjxA 201 :WSY T0506 149 :TE 1pjxA 205 :IK Number of specific fragments extracted= 2 number of extra gaps= 2 total=22897 1zsoA expands to /projects/compbio/data/pdb/1zso.pdb.gz 1zsoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zsoA.142.101 read from T0506.t2k.many.frag # adding 1zsoA to template set # found chain 1zsoA in template set T0506 142 :TRLYRLRTE 1zsoA 94 :RDFASFECR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22898 1zkoA expands to /projects/compbio/data/pdb/1zko.pdb.gz 1zkoA:Skipped atom 61, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 65, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 67, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 69, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 71, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 73, because occupancy 0.200 <= existing 0.800 in 1zkoA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 197, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 493, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 497, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 499, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 670, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 674, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 676, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 678, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 680, because occupancy 0.200 <= existing 0.800 in 1zkoA Skipped atom 682, because occupancy 0.200 <= existing 0.800 in 1zkoA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 947, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 949, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 973, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 977, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 979, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 981, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 983, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 985, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 1018, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 1020, because occupancy 0.500 <= existing 0.500 in 1zkoA Skipped atom 1045, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 1049, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 1051, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 1053, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 1055, because occupancy 0.300 <= existing 0.700 in 1zkoA Skipped atom 1057, because occupancy 0.300 <= existing 0.700 in 1zkoA # 1zkoA.142.106 read from T0506.t2k.many.frag # adding 1zkoA to template set # found chain 1zkoA in template set Warning: unaligning (T0506)Y145 (1zkoA)F98 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :TRL 1zkoA 95 :GWL T0506 146 :RLRTE 1zkoA 99 :KMEIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22900 # 2blkA.142.109 read from T0506.t2k.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)R148 (2blkA)W116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E150 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2blkA)H119 T0506 142 :TRLYRL 2blkA 110 :ISFYEV T0506 149 :T 2blkA 117 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=22902 1qhdA expands to /projects/compbio/data/pdb/1qhd.pdb.gz 1qhdA:Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 1771, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2271, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2273, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2275, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2277, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2279, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2281, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 2283, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3111, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3113, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3138, because occupancy 0.500 <= existing 0.500 in 1qhdA Skipped atom 3140, because occupancy 0.500 <= existing 0.500 in 1qhdA # 1qhdA.142.319 read from T0506.t2k.many.frag # adding 1qhdA to template set # found chain 1qhdA in template set Warning: unaligning (T0506)L144 (1qhdA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :TR 1qhdA 319 :TV T0506 145 :YRLRTE 1qhdA 322 :LTLRIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=22904 # 1xhnA.143.151 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 143 :RLYRLRTEG 1xhnA 152 :FFAKLNITN Number of specific fragments extracted= 1 number of extra gaps= 0 total=22905 # 1vl7A.143.139 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)R143 (1vl7A)R128 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LYRLRTEG 1vl7A 129 :IFQLTPKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22906 # 1uc2A.143.203 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R143 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTEG 1uc2A 205 :LEVQVVDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=22907 # 1ty9A.143.182 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRL 1ty9A 184 :VFEL T0506 150 :E 1ty9A 190 :E Number of specific fragments extracted= 2 number of extra gaps= 3 total=22909 # 1jb3A.143.33 read from T0506.t2k.many.frag # found chain 1jb3A in training set T0506 143 :RLYRLRTEG 1jb3A 35 :YSCKVRVWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22910 # 2asfA.143.117 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G151 (2asfA)R126 because E (beta_S) conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 2asfA 118 :VVIEVQIE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22911 # 1c8uA.143.243 read from T0506.t2k.many.frag # found chain 1c8uA in template set T0506 143 :RLYRLRTEG 1c8uA 245 :LLYSVESTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22912 # 1ia9A.143.74 read from T0506.t2k.many.frag # found chain 1ia9A in template set T0506 143 :RLYRLRTEG 1ia9A 1623 :RAVKVLCTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22913 # 1nlfA.143.231 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1nlfA)K240 because E (beta_S) conformation "forbidden" or filtered. T0506 143 :RLYRL 1nlfA 232 :FFVRF T0506 149 :TE 1nlfA 238 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=22915 # 2furA.143.150 read from T0506.t2k.many.frag # found chain 2furA in template set T0506 143 :RLYRLRTEG 2furA 150 :FVFAVKPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=22916 # 1wlfA.143.148 read from T0506.t2k.many.frag # found chain 1wlfA in template set T0506 143 :RLYRLRTEG 1wlfA 151 :TYIFIQIVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=22917 # 1f60A.143.397 read from T0506.t2k.many.frag # found chain 1f60A in training set T0506 143 :RLYRLRTEG 1f60A 398 :ALVKFVPSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=22918 # 1ahsA.143.115 read from T0506.t2k.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)R143 (1ahsA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTEG 1ahsA 242 :ILQFEVLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=22919 # 1uscA.143.131 read from T0506.t2k.many.frag # found chain 1uscA in training set T0506 143 :RLYRLRTEG 1uscA 132 :DLFVGRVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22920 # 1u5xA.143.5 read from T0506.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0506)G151 (1u5xA)N115 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1u5xA 107 :SVLHLVPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22921 # 1wubA.143.77 read from T0506.t2k.many.frag # found chain 1wubA in training set T0506 143 :RLYRLRTEG 1wubA 78 :PEIRFVSTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22922 # 1d7pM.143.133 read from T0506.t2k.many.frag # found chain 1d7pM in training set T0506 143 :RLYRLRTEG 1d7pM 2304 :RYLRIHPQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22923 # 1ok7A.143.157 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 143 :RLYRLRTEG 1ok7A 158 :MLFETEGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22924 # 1qhdA.143.320 read from T0506.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)L144 (1qhdA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :R 1qhdA 320 :V T0506 145 :YRLRTEG 1qhdA 322 :LTLRIES Number of specific fragments extracted= 2 number of extra gaps= 1 total=22926 # 1vpsA.143.247 read from T0506.t2k.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)G151 (1vpsA)G287 because S (epsilon) conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1vpsA 279 :YLSCVDIM Number of specific fragments extracted= 1 number of extra gaps= 1 total=22927 # 1oa8A.143.48 read from T0506.t2k.many.frag # found chain 1oa8A in training set Warning: unaligning (T0506)G151 (1oa8A)R618 because E (beta_S) conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1oa8A 610 :KIDSSTVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=22928 # 1m4jA.143.66 read from T0506.t2k.many.frag # found chain 1m4jA in training set Warning: unaligning (T0506)R143 (1m4jA)C67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1m4jA)S75 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1m4jA 68 :YVLFRLD Number of specific fragments extracted= 1 number of extra gaps= 2 total=22929 # 1flmA.143.108 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 143 :RLYRLRTEG 1flmA 109 :AALVITVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=22930 # 1qqqA.143.147 read from T0506.t2k.many.frag # found chain 1qqqA in training set T0506 143 :RLYRLRTEG 1qqqA 148 :AFFQFYVAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22931 # 1pjxA.143.198 read from T0506.t2k.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)R143 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1pjxA)L200 Warning: unaligning (T0506)L144 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1pjxA)L200 T0506 145 :YRLRTEG 1pjxA 201 :WSYDIKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=22932 # 1x6oA.143.95 read from T0506.t2k.many.frag # found chain 1x6oA in training set T0506 143 :RLYRLRTEG 1x6oA 88 :KTYTYSVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22933 # 1qyrA.143.173 read from T0506.t2k.many.frag # found chain 1qyrA in template set T0506 143 :RLYRLRTEG 1qyrA 190 :AVVRLVPHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22934 # 1tvgA.143.121 read from T0506.t2k.many.frag # found chain 1tvgA in training set Warning: unaligning (T0506)G151 (1tvgA)S121 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1tvgA 113 :TYLRFIIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22935 1i78A expands to /projects/compbio/data/pdb/1i78.pdb.gz 1i78A:# 1i78A.143.218 read from T0506.t2k.many.frag # adding 1i78A to template set # found chain 1i78A in template set T0506 143 :RLYRLRTEG 1i78A 219 :ITYRSKVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22936 1qcsA expands to /projects/compbio/data/pdb/1qcs.pdb.gz 1qcsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1qcsA.143.146 read from T0506.t2k.many.frag # adding 1qcsA to template set # found chain 1qcsA in template set T0506 143 :RLYRLRTEG 1qcsA 143 :KLFGLLVKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=22937 # 1vl7A.144.140 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 144 :LYRLRTEGV 1vl7A 129 :IFQLTPKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=22938 # 1xhnA.144.152 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 144 :LYRLRTEGV 1xhnA 153 :FAKLNITNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22939 # 1ty9A.144.183 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 144 :LYRL 1ty9A 184 :VFEL T0506 150 :EGV 1ty9A 190 :ESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22941 # 2asfA.144.118 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 144 :LYRLRTEGV 2asfA 119 :VIEVQIERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22942 # 1jb3A.144.34 read from T0506.t2k.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)R148 (1jb3A)R40 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LYRL 1jb3A 36 :SCKV T0506 149 :TEGV 1jb3A 41 :VWRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=22944 # 2furA.144.151 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)V152 (2furA)F159 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTEG 2furA 151 :VFAVKPET Number of specific fragments extracted= 1 number of extra gaps= 1 total=22945 # 1uc2A.144.204 read from T0506.t2k.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R146 (1uc2A)V207 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LY 1uc2A 205 :LE T0506 147 :LRTEGV 1uc2A 208 :QVVDKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22947 # 1u5xA.144.6 read from T0506.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0506)G151 (1u5xA)N115 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1u5xA 108 :VLHLVPV T0506 152 :V 1u5xA 116 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=22949 # 1nlfA.144.232 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRL 1nlfA 233 :FVRF T0506 149 :TEGV 1nlfA 238 :VSKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=22951 # 1uscA.144.132 read from T0506.t2k.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)R148 (1uscA)R137 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LYRL 1uscA 133 :LFVG T0506 149 :TEGV 1uscA 138 :VVAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=22953 # 1c8uA.144.244 read from T0506.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0506)G151 (1c8uA)S253 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1c8uA 246 :LYSVEST T0506 152 :V 1c8uA 254 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=22955 # 1wlfA.144.149 read from T0506.t2k.many.frag # found chain 1wlfA in template set T0506 144 :LYRLRTEGV 1wlfA 152 :YIFIQIVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=22956 # 1ia9A.144.75 read from T0506.t2k.many.frag # found chain 1ia9A in template set Warning: unaligning (T0506)G151 (1ia9A)W1631 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1ia9A 1624 :AVKVLCT T0506 152 :V 1ia9A 1632 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=22958 # 1wubA.144.78 read from T0506.t2k.many.frag # found chain 1wubA in training set T0506 144 :LYRLRTEGV 1wubA 79 :EIRFVSTQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22959 # 1f60A.144.398 read from T0506.t2k.many.frag # found chain 1f60A in training set T0506 144 :LYRLRTEGV 1f60A 399 :LVKFVPSKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=22960 # 1oa8A.144.49 read from T0506.t2k.many.frag # found chain 1oa8A in training set Warning: unaligning (T0506)R148 (1oa8A)T615 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LYRL 1oa8A 611 :IDSS T0506 149 :TEGV 1oa8A 616 :VERI Number of specific fragments extracted= 2 number of extra gaps= 1 total=22962 # 1d7pM.144.134 read from T0506.t2k.many.frag # found chain 1d7pM in training set T0506 144 :LYRLRTEGV 1d7pM 2305 :YLRIHPQSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22963 # 1qhdA.144.321 read from T0506.t2k.many.frag # found chain 1qhdA in template set T0506 144 :LYRLRTEGV 1qhdA 321 :GLTLRIESA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22964 # 1ahsA.144.116 read from T0506.t2k.many.frag # found chain 1ahsA in template set T0506 144 :LYRLRTEGV 1ahsA 242 :ILQFEVLWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=22965 # 1ok7A.144.158 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)T149 (1ok7A)G164 because S (epsilon) conformation "forbidden" or filtered. T0506 144 :LYRLR 1ok7A 159 :LFETE T0506 150 :EGV 1ok7A 165 :EEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22967 # 1jh6A.144.68 read from T0506.t2k.many.frag # found chain 1jh6A in training set Warning: unaligning (T0506)Y145 (1jh6A)Y70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1jh6A)R76 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :L 1jh6A 69 :A T0506 146 :RLRTE 1jh6A 71 :TATVD T0506 152 :V 1jh6A 77 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=22970 # 1x6oA.144.96 read from T0506.t2k.many.frag # found chain 1x6oA in training set T0506 144 :LYRLRTEGV 1x6oA 89 :TYTYSVLDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22971 # 1vpsA.144.248 read from T0506.t2k.many.frag # found chain 1vpsA in template set T0506 144 :LYRLRTEGV 1vpsA 280 :LSCVDIMGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22972 # 1qcsA.144.147 read from T0506.t2k.many.frag # found chain 1qcsA in template set T0506 144 :LYRLRTEGV 1qcsA 144 :LFGLLVKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=22973 # 1flmA.144.109 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 144 :LYRLRTEGV 1flmA 110 :ALVITVVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=22974 1ng0A expands to /projects/compbio/data/pdb/1ng0.pdb.gz 1ng0A:# 1ng0A.144.104 read from T0506.t2k.many.frag # adding 1ng0A to template set # found chain 1ng0A in template set T0506 144 :LYRLRTEGV 1ng0A 105 :YALWRPKHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22975 1yqyA expands to /projects/compbio/data/pdb/1yqy.pdb.gz 1yqyA:# 1yqyA.144.266 read from T0506.t2k.many.frag # adding 1yqyA to template set # found chain 1yqyA in template set Warning: unaligning (T0506)L144 (1yqyA)N524 because L (left) conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1yqyA 525 :IGLEIKDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22976 2ahmE expands to /projects/compbio/data/pdb/2ahm.pdb.gz 2ahmE:# 2ahmE.144.155 read from T0506.t2k.many.frag # adding 2ahmE to template set # found chain 2ahmE in template set Warning: unaligning (T0506)L144 (2ahmE)S156 because L (left) conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 2ahmE 157 :ALWEIQQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=22977 1c8nA expands to /projects/compbio/data/pdb/1c8n.pdb.gz 1c8nA:# 1c8nA.144.128 read from T0506.t2k.many.frag # adding 1c8nA to template set # found chain 1c8nA in template set Warning: unaligning (T0506)L147 (1c8nA)W132 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYR 1c8nA 129 :YSK T0506 148 :RTEGV 1c8nA 133 :RWVSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22979 # 1i78A.144.219 read from T0506.t2k.many.frag # found chain 1i78A in template set T0506 144 :LYRLRTEGV 1i78A 220 :TYRSKVKDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=22980 # 1xhnA.145.153 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 145 :YRLRTEGVQ 1xhnA 154 :AKLNITNIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=22981 # 1vl7A.145.141 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 145 :YRLRTEGVQ 1vl7A 130 :FQLTPKEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=22982 # 1ty9A.145.184 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRL 1ty9A 185 :FEL T0506 150 :E 1ty9A 190 :E T0506 152 :VQ 1ty9A 192 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=22985 # 2asfA.145.119 read from T0506.t2k.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G151 (2asfA)R126 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 2asfA 120 :IEVQIE T0506 152 :VQ 2asfA 127 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=22987 # 1u5xA.145.7 read from T0506.t2k.many.frag # found chain 1u5xA in training set Warning: unaligning (T0506)G151 (1u5xA)N115 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 1u5xA 109 :LHLVPV T0506 152 :VQ 1u5xA 116 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=22989 # 2furA.145.152 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 2furA 152 :FAVKPE T0506 152 :VQ 2furA 159 :FS Number of specific fragments extracted= 2 number of extra gaps= 1 total=22991 # 1jb3A.145.35 read from T0506.t2k.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)R148 (1jb3A)R40 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1jb3A)R43 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRL 1jb3A 37 :CKV T0506 149 :TE 1jb3A 41 :VW T0506 152 :VQ 1jb3A 44 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=22994 # 1qhdA.145.322 read from T0506.t2k.many.frag # found chain 1qhdA in template set T0506 145 :YRLRTEGVQ 1qhdA 322 :LTLRIESAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=22995 # 1wubA.145.79 read from T0506.t2k.many.frag # found chain 1wubA in training set T0506 145 :YRLRTEGVQ 1wubA 80 :IRFVSTQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22996 # 1wlfA.145.150 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)G151 (1wlfA)T159 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 1wlfA 153 :IFIQIV T0506 152 :VQ 1wlfA 160 :LM Number of specific fragments extracted= 2 number of extra gaps= 1 total=22998 # 1oa8A.145.50 read from T0506.t2k.many.frag # found chain 1oa8A in training set T0506 145 :YRLRTEGVQ 1oa8A 612 :DSSTVERIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=22999 # 1jh6A.145.69 read from T0506.t2k.many.frag # found chain 1jh6A in training set T0506 145 :YRLRTEGVQ 1jh6A 70 :YTATVDRVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23000 # 1yqyA.145.267 read from T0506.t2k.many.frag # found chain 1yqyA in template set Warning: unaligning (T0506)G151 (1yqyA)D531 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1yqyA)Q533 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 1yqyA 525 :IGLEIK T0506 152 :V 1yqyA 532 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=23002 # 1nlfA.145.233 read from T0506.t2k.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1nlfA)K240 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRL 1nlfA 234 :VRF T0506 149 :TE 1nlfA 238 :VS T0506 152 :VQ 1nlfA 241 :AN Number of specific fragments extracted= 3 number of extra gaps= 2 total=23005 # 1qcsA.145.148 read from T0506.t2k.many.frag # found chain 1qcsA in template set Warning: unaligning (T0506)G151 (1qcsA)D151 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 1qcsA 145 :FGLLVK T0506 152 :VQ 1qcsA 152 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23007 # 2ahmE.145.156 read from T0506.t2k.many.frag # found chain 2ahmE in template set Warning: unaligning (T0506)G151 (2ahmE)Q163 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 2ahmE 157 :ALWEIQ T0506 152 :VQ 2ahmE 164 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23009 # 1uc2A.145.205 read from T0506.t2k.many.frag # found chain 1uc2A in template set T0506 145 :YRLRTEGVQ 1uc2A 206 :EVQVVDKIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23010 # 1ia9A.145.76 read from T0506.t2k.many.frag # found chain 1ia9A in template set T0506 145 :YRLRTEGVQ 1ia9A 1625 :VKVLCTWSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23011 # 1f60A.145.399 read from T0506.t2k.many.frag # found chain 1f60A in training set T0506 145 :YRLRTEGVQ 1f60A 400 :VKFVPSKPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23012 # 1d7pM.145.135 read from T0506.t2k.many.frag # found chain 1d7pM in training set T0506 145 :YRLRTEGVQ 1d7pM 2306 :LRIHPQSWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23013 # 1c8uA.145.245 read from T0506.t2k.many.frag # found chain 1c8uA in template set Warning: unaligning (T0506)R146 (1c8uA)S248 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1c8uA)S253 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1c8uA)S255 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :Y 1c8uA 247 :Y T0506 147 :LRTE 1c8uA 249 :VEST T0506 152 :V 1c8uA 254 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=23016 # 1uscA.145.133 read from T0506.t2k.many.frag # found chain 1uscA in training set T0506 145 :YRLRTEGVQ 1uscA 134 :FVGRVVAVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=23017 # 1x6oA.145.97 read from T0506.t2k.many.frag # found chain 1x6oA in training set T0506 145 :YRLRTEGVQ 1x6oA 90 :YTYSVLDIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23018 # 1w0pA.145.486 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)G151 (1w0pA)K493 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 1w0pA 487 :GRLHVQ T0506 152 :VQ 1w0pA 494 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23020 # 1ok7A.145.159 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)Q153 (1ok7A)R168 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1ok7A 160 :FETEGEEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23021 # 1c8nA.145.129 read from T0506.t2k.many.frag # found chain 1c8nA in template set T0506 145 :YRLRTEGVQ 1c8nA 130 :SKWRWVSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23022 # 1ahsA.145.117 read from T0506.t2k.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)Q153 because last residue in template chain is (1ahsA)T251 T0506 145 :YRLRTEGV 1ahsA 243 :LQFEVLWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23023 # 1flmA.145.110 read from T0506.t2k.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G151 (1flmA)S117 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 1flmA 111 :LVITVV T0506 152 :VQ 1flmA 118 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23025 # 1rz2A.145.174 read from T0506.t2k.many.frag # found chain 1rz2A in training set Warning: unaligning (T0506)Q153 (1rz2A)Y183 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1rz2A 175 :YDLEVFSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23026 # 1vpsA.145.249 read from T0506.t2k.many.frag # found chain 1vpsA in template set T0506 145 :YRLRTEGVQ 1vpsA 281 :SCVDIMGWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23027 # 1xhnA.146.154 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 146 :RLRTEGVQI 1xhnA 155 :KLNITNIWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23028 # 1vl7A.146.142 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 146 :RLRTEGVQI 1vl7A 131 :QLTPKEGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23029 # 1ty9A.146.185 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RL 1ty9A 186 :EL T0506 150 :E 1ty9A 190 :E T0506 152 :VQI 1ty9A 192 :LEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=23032 # 2asfA.146.120 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 146 :RLRTEGVQI 2asfA 121 :EVQIERVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23033 # 2furA.146.153 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (2furA)S160 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 2furA 153 :AVKPE T0506 152 :V 2furA 159 :F T0506 154 :I 2furA 161 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=23036 # 1wubA.146.80 read from T0506.t2k.many.frag # found chain 1wubA in training set T0506 146 :RLRTEGVQI 1wubA 81 :RFVSTQIEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23037 # 1u5xA.146.8 read from T0506.t2k.many.frag # found chain 1u5xA in training set T0506 146 :RLRTEGVQ 1u5xA 110 :HLVPVNIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23038 # 1qhdA.146.323 read from T0506.t2k.many.frag # found chain 1qhdA in template set T0506 146 :RLRTEGVQI 1qhdA 323 :TLRIESAVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23039 # 1jh6A.146.70 read from T0506.t2k.many.frag # found chain 1jh6A in training set T0506 146 :RLRTEGVQI 1jh6A 71 :TATVDRVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=23040 # 1oa8A.146.51 read from T0506.t2k.many.frag # found chain 1oa8A in training set Warning: unaligning (T0506)G151 (1oa8A)R618 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1oa8A)E620 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 1oa8A 613 :SSTVE T0506 152 :V 1oa8A 619 :I T0506 154 :I 1oa8A 621 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=23043 # 1qcsA.146.149 read from T0506.t2k.many.frag # found chain 1qcsA in template set Warning: unaligning (T0506)Q153 (1qcsA)E153 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTEGV 1qcsA 146 :GLLVKDI T0506 154 :I 1qcsA 154 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23045 # 2ahmE.146.157 read from T0506.t2k.many.frag # found chain 2ahmE in template set T0506 146 :RLRTEGVQI 2ahmE 158 :LWEIQQVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23046 # 1w0pA.146.487 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 146 :RLRTEGVQI 1w0pA 488 :RLHVQKIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23047 # 1yqyA.146.268 read from T0506.t2k.many.frag # found chain 1yqyA in template set T0506 146 :RLRTEGVQI 1yqyA 526 :GLEIKDVQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23048 # 1o75A.146.143 read from T0506.t2k.many.frag # found chain 1o75A in template set T0506 146 :RLRTEGVQI 1o75A 144 :EYKITNVKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23049 # 1jb3A.146.36 read from T0506.t2k.many.frag # found chain 1jb3A in training set T0506 146 :RLRTEGVQI 1jb3A 38 :KVRVWRYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23050 # 1c8nA.146.130 read from T0506.t2k.many.frag # found chain 1c8nA in template set Warning: unaligning (T0506)L147 (1c8nA)W132 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :R 1c8nA 131 :K T0506 148 :RTEGVQI 1c8nA 133 :RWVSLRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23052 # 1n62B.146.673 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)G151 (1n62B)R679 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 1n62B 674 :VAKTR T0506 152 :VQI 1n62B 680 :FYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23054 2cxhA expands to /projects/compbio/data/pdb/2cxh.pdb.gz 2cxhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cxhA.146.115 read from T0506.t2k.many.frag # adding 2cxhA to template set # found chain 2cxhA in template set Warning: unaligning (T0506)Q153 (2cxhA)S103 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTEGV 2cxhA 96 :SFIVKGV T0506 154 :I 2cxhA 104 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23056 # 1hp1A.146.280 read from T0506.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0506)Q153 (1hp1A)Q313 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTEGV 1hp1A 306 :EMKMVNY T0506 154 :I 1hp1A 314 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23058 # 1wlfA.146.151 read from T0506.t2k.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)I154 (1wlfA)P162 because C (cis) conformation "forbidden" or filtered. T0506 146 :RLRTEGVQ 1wlfA 154 :FIQIVTLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23059 # 2f1lA.146.63 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)Q153 (2f1lA)R59 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTEGV 2f1lA 52 :QAELVRG T0506 154 :I 2f1lA 60 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23061 # 1flmA.146.111 read from T0506.t2k.many.frag # found chain 1flmA in training set T0506 146 :RLRTEGVQI 1flmA 112 :VITVVSAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23062 # 1nlfA.146.234 read from T0506.t2k.many.frag # found chain 1nlfA in template set T0506 146 :RLRTEGVQI 1nlfA 235 :RFGVSKANY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23063 # 1zsoA.146.105 read from T0506.t2k.many.frag # found chain 1zsoA in template set T0506 146 :RLRTEGVQI 1zsoA 98 :SFECRGIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23064 # 1ok7A.146.160 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)T149 (1ok7A)G164 because S (epsilon) conformation "forbidden" or filtered. T0506 146 :RLR 1ok7A 161 :ETE T0506 150 :EGVQI 1ok7A 165 :EELRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23066 # 1rz2A.146.175 read from T0506.t2k.many.frag # found chain 1rz2A in training set T0506 146 :RLRTEGVQI 1rz2A 176 :DLEVFSVYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23067 # 1uv7A.146.89 read from T0506.t2k.many.frag # found chain 1uv7A in training set Warning: unaligning (T0506)R146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uv7A)V153 T0506 147 :LRTEGVQI 1uv7A 154 :VEVKRLQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23068 # 1x6oA.146.98 read from T0506.t2k.many.frag # found chain 1x6oA in training set T0506 146 :RLRTEGVQI 1x6oA 91 :TYSVLDIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23069 # 1d7pM.146.136 read from T0506.t2k.many.frag # found chain 1d7pM in training set Warning: unaligning (T0506)I154 (1d7pM)H2315 because T (delta_L) conformation "forbidden" or filtered. T0506 146 :RLRTEGVQ 1d7pM 2307 :RIHPQSWV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23070 # 1xhnA.147.155 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 147 :LRTEGVQIN 1xhnA 156 :LNITNIWVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23071 # 1vl7A.147.143 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 147 :LRTEGVQIN 1vl7A 132 :LTPKEGRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23072 # 2furA.147.154 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V152 (2furA)F159 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (2furA)S160 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTE 2furA 154 :VKPE T0506 154 :IN 2furA 161 :MK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23074 # 1n62B.147.674 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)N155 (1n62B)L683 because P (beta_P) conformation "forbidden" or filtered. T0506 147 :LRTEGVQI 1n62B 675 :AKTRRFYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23075 # 1ty9A.147.186 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 147 :L 1ty9A 187 :L T0506 150 :EGVQIN 1ty9A 190 :ESLEFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=23077 # 1qhdA.147.324 read from T0506.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)G151 (1qhdA)S328 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTE 1qhdA 324 :LRIE T0506 152 :VQIN 1qhdA 329 :AVCE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23079 # 1wubA.147.81 read from T0506.t2k.many.frag # found chain 1wubA in training set T0506 147 :LRTEGVQIN 1wubA 82 :FVSTQIEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23080 # 1w0pA.147.488 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)N155 (1w0pA)T497 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTEGVQI 1w0pA 489 :LHVQKIVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23081 # 2asfA.147.121 read from T0506.t2k.many.frag # found chain 2asfA in template set T0506 147 :LRTEGVQIN 2asfA 122 :VQIERVLGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23082 # 1o75A.147.144 read from T0506.t2k.many.frag # found chain 1o75A in template set T0506 147 :LRTEGVQIN 1o75A 145 :YKITNVKVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23083 # 1u5xA.147.9 read from T0506.t2k.many.frag # found chain 1u5xA in training set T0506 147 :LRTEGVQ 1u5xA 111 :LVPVNIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23084 # 1yqyA.147.269 read from T0506.t2k.many.frag # found chain 1yqyA in template set T0506 147 :LRTEGVQIN 1yqyA 527 :LEIKDVQII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23085 # 1jh6A.147.71 read from T0506.t2k.many.frag # found chain 1jh6A in training set Warning: unaligning (T0506)G151 (1jh6A)R76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1jh6A)G80 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 1jh6A 72 :ATVD T0506 152 :VQI 1jh6A 77 :VST Number of specific fragments extracted= 2 number of extra gaps= 2 total=23087 # 1e4fT.147.225 read from T0506.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)L147 (1e4fT)G226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1e4fT)K230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1e4fT)S232 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTE 1e4fT 227 :VPI T0506 152 :V 1e4fT 231 :I T0506 154 :IN 1e4fT 233 :YV Number of specific fragments extracted= 3 number of extra gaps= 3 total=23090 1nmoA expands to /projects/compbio/data/pdb/1nmo.pdb.gz 1nmoA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1nmoA.147.162 read from T0506.t2k.many.frag # adding 1nmoA to template set # found chain 1nmoA in template set Warning: unaligning (T0506)G151 (1nmoA)R167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I154 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 1nmoA 163 :EVVQ T0506 152 :VQ 1nmoA 168 :VA T0506 155 :N 1nmoA 171 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=23093 # 1oa8A.147.52 read from T0506.t2k.many.frag # found chain 1oa8A in training set T0506 147 :LRTEGVQIN 1oa8A 614 :STVERIEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23094 # 1qwoA.147.46 read from T0506.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0506)G151 (1qwoA)L52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1qwoA)L56 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTE 1qwoA 48 :CRIT T0506 152 :VQI 1qwoA 53 :VQV Number of specific fragments extracted= 2 number of extra gaps= 2 total=23096 # 1hp1A.147.281 read from T0506.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0506)G151 (1hp1A)N311 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 1hp1A 307 :MKMV T0506 152 :VQIN 1hp1A 312 :YQLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23098 1i31A expands to /projects/compbio/data/pdb/1i31.pdb.gz 1i31A:# 1i31A.147.206 read from T0506.t2k.many.frag # adding 1i31A to template set # found chain 1i31A in template set T0506 147 :LRTEGVQIN 1i31A 328 :LNTSGVQVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23099 # 2ahmE.147.158 read from T0506.t2k.many.frag # found chain 2ahmE in template set Warning: unaligning (T0506)G151 (2ahmE)Q163 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 2ahmE 159 :WEIQ T0506 152 :VQIN 2ahmE 164 :VVDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23101 # 1c8nA.147.131 read from T0506.t2k.many.frag # found chain 1c8nA in template set T0506 147 :LRTEGVQIN 1c8nA 132 :WRWVSLRII Number of specific fragments extracted= 1 number of extra gaps= 0 total=23102 1r1mA expands to /projects/compbio/data/pdb/1r1m.pdb.gz 1r1mA:# 1r1mA.147.43 read from T0506.t2k.many.frag # adding 1r1mA to template set # found chain 1r1mA in template set T0506 147 :LRTEGVQIN 1r1mA 108 :TNIQSVRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23103 # 1iq4A.147.28 read from T0506.t2k.many.frag # found chain 1iq4A in training set T0506 147 :LRTEGVQIN 1iq4A 29 :PKIEKIVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23104 1su0B expands to /projects/compbio/data/pdb/1su0.pdb.gz 1su0B:# 1su0B.147.52 read from T0506.t2k.many.frag # adding 1su0B to template set # found chain 1su0B in template set Warning: unaligning (T0506)G151 (1su0B)D57 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 1su0B 53 :DKIE T0506 152 :VQIN 1su0B 58 :IAFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23106 # 1qcsA.147.150 read from T0506.t2k.many.frag # found chain 1qcsA in template set T0506 147 :LRTEGVQIN 1qcsA 147 :LLVKDIEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23107 # 1ok7A.147.161 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)T149 (1ok7A)G164 because S (epsilon) conformation "forbidden" or filtered. T0506 147 :LR 1ok7A 162 :TE T0506 150 :EGVQIN 1ok7A 165 :EELRTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23109 # 2f1lA.147.64 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)G151 (2f1lA)R57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (2f1lA)R59 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 2f1lA 53 :AELV T0506 152 :V 2f1lA 58 :G T0506 154 :IN 2f1lA 60 :LH Number of specific fragments extracted= 3 number of extra gaps= 2 total=23112 # 1nnwA.147.31 read from T0506.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0506)G151 (1nnwA)K36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1nnwA)L40 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTE 1nnwA 32 :YEIE T0506 152 :VQI 1nnwA 37 :YYI Number of specific fragments extracted= 2 number of extra gaps= 2 total=23114 # 2cxhA.147.116 read from T0506.t2k.many.frag # found chain 2cxhA in template set T0506 147 :LRTEGVQIN 2cxhA 97 :FIVKGVSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23115 # 1jmkC.147.96 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)G151 (1jmkC)R102 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 1jmkC 98 :RIVQ T0506 152 :VQIN 1jmkC 103 :IIMV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23117 # 1xhnA.148.156 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)Q153 (1xhnA)W162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. T0506 148 :RTEGV 1xhnA 157 :NITNI T0506 154 :IN 1xhnA 163 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23119 # 1n62B.148.675 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)G156 (1n62B)D684 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1n62B 676 :KTRRFYAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23120 # 1nmoA.148.163 read from T0506.t2k.many.frag # found chain 1nmoA in template set T0506 148 :RTEGVQING 1nmoA 164 :VVQRVAWCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23121 # 1e4fT.148.226 read from T0506.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)Q153 (1e4fT)S232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I154 (1e4fT)Y233 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1e4fT)P235 because N (gamma') conformation "forbidden" or filtered. T0506 148 :RTEGV 1e4fT 227 :VPIKI T0506 155 :N 1e4fT 234 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=23123 # 1w0pA.148.489 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)G156 (1w0pA)Q498 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1w0pA 490 :HVQKIVLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=23124 # 1vl7A.148.144 read from T0506.t2k.many.frag # found chain 1vl7A in training set T0506 148 :RTEGVQING 1vl7A 133 :TPKEGRFVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23125 # 1i31A.148.207 read from T0506.t2k.many.frag # found chain 1i31A in template set T0506 148 :RTEGVQING 1i31A 329 :NTSGVQVIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=23126 # 1su0B.148.53 read from T0506.t2k.many.frag # found chain 1su0B in template set Warning: unaligning (T0506)G156 (1su0B)G62 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1su0B 54 :KIEDIAFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23127 # 1qhdA.148.325 read from T0506.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)G151 (1qhdA)S328 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTE 1qhdA 325 :RIE T0506 152 :VQING 1qhdA 329 :AVCES Number of specific fragments extracted= 2 number of extra gaps= 1 total=23129 # 1qwoA.148.47 read from T0506.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0506)G156 (1qwoA)S57 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1qwoA 49 :RITLVQVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23130 # 1iq4A.148.29 read from T0506.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0506)G156 (1iq4A)M38 because D (zeta) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1iq4A 30 :KIEKIVIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=23131 # 1nnwA.148.32 read from T0506.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0506)G151 (1nnwA)K36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1nnwA)N42 T0506 148 :RTE 1nnwA 33 :EIE T0506 152 :VQIN 1nnwA 37 :YYIL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23133 # 1kmvA.148.107 read from T0506.t2k.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G151 (1kmvA)M111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 T0506 148 :RTE 1kmvA 108 :KVD T0506 152 :VQIN 1kmvA 112 :VWIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=23135 # 1vefA.148.327 read from T0506.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0506)I154 (1vefA)G334 because S (epsilon) conformation "forbidden" or filtered. T0506 148 :RTEGVQ 1vefA 328 :KIREVR T0506 155 :NG 1vefA 335 :MG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23137 # 1vkhA.148.154 read from T0506.t2k.many.frag # found chain 1vkhA in template set T0506 148 :RTEGVQING 1vkhA 143 :IVKRVFLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23138 # 1jmkC.148.97 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)G151 (1jmkC)R102 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTE 1jmkC 99 :IVQ T0506 152 :VQING 1jmkC 103 :IIMVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23140 # 1ty9A.148.187 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 150 :EGVQING 1ty9A 190 :ESLEFWG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23141 # 1r1mA.148.44 read from T0506.t2k.many.frag # found chain 1r1mA in template set Warning: unaligning (T0506)G151 (1r1mA)S112 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTE 1r1mA 109 :NIQ T0506 152 :VQING 1r1mA 113 :VRVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23143 # 1vqoM.148.113 read from T0506.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0506)Q153 (1vqoM)Y118 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTEGV 1vqoM 113 :RVLNS T0506 154 :ING 1vqoM 119 :SVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23145 # 1hp1A.148.282 read from T0506.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0506)G156 (1hp1A)P316 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1hp1A 308 :KMVNYQLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23146 # 1xqwA.148.120 read from T0506.t2k.many.frag # found chain 1xqwA in template set T0506 148 :RTEGVQING 1xqwA 121 :HLKGLIVSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23147 # 2f1lA.148.65 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)Q153 (2f1lA)R59 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTEGV 2f1lA 54 :ELVRG T0506 154 :ING 2f1lA 60 :LHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23149 # 2furA.148.155 read from T0506.t2k.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 T0506 148 :RTE 2furA 155 :KPE T0506 152 :VQIN 2furA 159 :FSMK Number of specific fragments extracted= 2 number of extra gaps= 2 total=23151 1i2aA expands to /projects/compbio/data/pdb/1i2a.pdb.gz 1i2aA:# 1i2aA.148.194 read from T0506.t2k.many.frag # adding 1i2aA to template set # found chain 1i2aA in template set Warning: unaligning (T0506)N155 (1i2aA)K202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1i2aA)L203 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTEGVQI 1i2aA 195 :HIKDAYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23152 # 1ok7A.148.162 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 148 :RTEGVQING 1ok7A 163 :EGEELRTVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23153 # 1wubA.148.82 read from T0506.t2k.many.frag # found chain 1wubA in training set Warning: unaligning (T0506)N155 (1wubA)L90 because G (3-10) conformation "forbidden" or filtered. T0506 148 :RTEGVQI 1wubA 83 :VSTQIEP T0506 156 :G 1wubA 91 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23155 # 1o75A.148.145 read from T0506.t2k.many.frag # found chain 1o75A in template set T0506 148 :RTEGVQING 1o75A 146 :KITNVKVHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23156 # 1c8nA.148.132 read from T0506.t2k.many.frag # found chain 1c8nA in template set T0506 148 :RTEGVQING 1c8nA 133 :RWVSLRIIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23157 # 1qxmA.148.252 read from T0506.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0506)R148 (1qxmA)D239 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1qxmA)I244 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1qxmA)N247 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TEGV 1qxmA 240 :ASKY T0506 154 :IN 1qxmA 245 :LY Number of specific fragments extracted= 2 number of extra gaps= 3 total=23159 # 1uxoA.148.90 read from T0506.t2k.many.frag # found chain 1uxoA in training set T0506 148 :RTEGVQING 1uxoA 89 :ALGGIILVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23160 # 1xhnA.149.157 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1xhnA 158 :ITNIWVL T0506 157 :G 1xhnA 166 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=23162 # 1n62B.149.676 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)N155 (1n62B)L683 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1n62B)D684 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQI 1n62B 677 :TRRFYA T0506 157 :G 1n62B 685 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=23164 # 1nmoA.149.164 read from T0506.t2k.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)I154 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1nmoA)C171 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQ 1nmoA 165 :VQRVA T0506 156 :GG 1nmoA 172 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23166 # 1w0pA.149.490 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)G156 (1w0pA)Q498 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1w0pA 491 :VQKIVLT T0506 157 :G 1w0pA 499 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=23168 # 1vkhA.149.155 read from T0506.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0506)G151 (1vkhA)R146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1vkhA)F148 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1vkhA)G152 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TE 1vkhA 144 :VK T0506 152 :V 1vkhA 147 :V T0506 154 :ING 1vkhA 149 :LLD Number of specific fragments extracted= 3 number of extra gaps= 3 total=23171 # 1qwoA.149.48 read from T0506.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0506)G156 (1qwoA)S57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1qwoA)R58 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1qwoA 50 :ITLVQVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23172 # 1e4fT.149.227 read from T0506.t2k.many.frag # found chain 1e4fT in template set T0506 149 :TEGVQINGG 1e4fT 228 :PIKISYVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23173 # 1i31A.149.208 read from T0506.t2k.many.frag # found chain 1i31A in template set T0506 149 :TEGVQINGG 1i31A 330 :TSGVQVICM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23174 # 1kmvA.149.108 read from T0506.t2k.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G151 (1kmvA)M111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 149 :TE 1kmvA 109 :VD T0506 152 :VQIN 1kmvA 112 :VWIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=23176 # 1jmkC.149.98 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)G151 (1jmkC)R102 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TE 1jmkC 100 :VQ T0506 152 :VQINGG 1jmkC 103 :IIMVDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23178 # 1vqoM.149.114 read from T0506.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0506)Q153 (1vqoM)Y118 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TEGV 1vqoM 114 :VLNS T0506 154 :INGG 1vqoM 119 :SVGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23180 # 1vefA.149.328 read from T0506.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0506)G151 (1vefA)E331 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I154 (1vefA)G334 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1vefA)L337 because G (3-10) conformation "forbidden" or filtered. T0506 149 :TE 1vefA 329 :IR T0506 152 :VQ 1vefA 332 :VR T0506 155 :NG 1vefA 335 :MG Number of specific fragments extracted= 3 number of extra gaps= 3 total=23183 # 1uxoA.149.91 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)G151 (1uxoA)G92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1uxoA)I94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1uxoA)V96 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TE 1uxoA 90 :LG T0506 152 :V 1uxoA 93 :I T0506 154 :I 1uxoA 95 :L T0506 156 :GG 1uxoA 97 :SG Number of specific fragments extracted= 4 number of extra gaps= 3 total=23187 # 1i2aA.149.195 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)N155 (1i2aA)K202 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TEGVQI 1i2aA 196 :IKDAYV T0506 156 :GG 1i2aA 203 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23189 # 1nnwA.149.33 read from T0506.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0506)Q153 (1nnwA)Y38 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1nnwA)N42 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1nnwA)N42 T0506 149 :TEGV 1nnwA 34 :IEKY T0506 154 :IN 1nnwA 39 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23191 # 1xqwA.149.121 read from T0506.t2k.many.frag # found chain 1xqwA in template set T0506 149 :TEGVQINGG 1xqwA 122 :LKGLIVSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=23192 # 1ok7A.149.163 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 149 :TEGVQINGG 1ok7A 164 :GEELRTVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23193 # 1r1mA.149.45 read from T0506.t2k.many.frag # found chain 1r1mA in template set Warning: unaligning (T0506)G151 (1r1mA)S112 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TE 1r1mA 110 :IQ T0506 152 :VQINGG 1r1mA 113 :VRVEGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23195 # 1su0B.149.54 read from T0506.t2k.many.frag # found chain 1su0B in template set Warning: unaligning (T0506)G157 (1su0B)N63 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQING 1su0B 55 :IEDIAFAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23196 # 1qhdA.149.326 read from T0506.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)G156 (1qhdA)S333 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1qhdA 326 :IESAVCE T0506 157 :G 1qhdA 334 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23198 # 1iq4A.149.30 read from T0506.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0506)G151 (1iq4A)K33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1iq4A)M38 because D (zeta) conformation "forbidden" or filtered. T0506 149 :TE 1iq4A 31 :IE T0506 152 :VQIN 1iq4A 34 :IVIN T0506 157 :G 1iq4A 39 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=23201 # 1ty9A.149.188 read from T0506.t2k.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1ty9A 190 :E T0506 152 :VQINGG 1ty9A 192 :LEFWGN Number of specific fragments extracted= 2 number of extra gaps= 2 total=23203 # 1nbcA.149.54 read from T0506.t2k.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TEGV 1nbcA 55 :CDHA T0506 154 :INGG 1nbcA 60 :IIGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23205 # 1vl7A.149.145 read from T0506.t2k.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G156 (1vl7A)I141 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1vl7A 134 :PKEGRFV T0506 157 :G 1vl7A 142 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23207 # 1c8nA.149.133 read from T0506.t2k.many.frag # found chain 1c8nA in template set Warning: unaligning (T0506)G156 (1c8nA)Y141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1c8nA)S142 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1c8nA 134 :WVSLRII Number of specific fragments extracted= 1 number of extra gaps= 1 total=23208 # 1tvgA.149.68 read from T0506.t2k.many.frag # found chain 1tvgA in training set Warning: unaligning (T0506)G151 (1tvgA)R61 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TE 1tvgA 59 :IE T0506 152 :VQINGG 1tvgA 62 :LVIQSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23210 # 1qxmA.149.253 read from T0506.t2k.many.frag # found chain 1qxmA in training set Warning: unaligning (T0506)G156 (1qxmA)N247 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1qxmA 240 :ASKYILY T0506 157 :G 1qxmA 248 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=23212 # 1o75A.149.146 read from T0506.t2k.many.frag # found chain 1o75A in template set T0506 149 :TEGVQINGG 1o75A 147 :ITNVKVHGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23213 # 1hp1A.149.283 read from T0506.t2k.many.frag # found chain 1hp1A in training set Warning: unaligning (T0506)G151 (1hp1A)N311 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1hp1A)P316 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1hp1A)V317 because N (gamma') conformation "forbidden" or filtered. T0506 149 :TE 1hp1A 309 :MV T0506 152 :VQIN 1hp1A 312 :YQLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=23215 # 1rcqA.149.149 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)G151 (1rcqA)K152 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TE 1rcqA 150 :VA T0506 152 :VQINGG 1rcqA 153 :IVMMSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23217 # 1xhnA.150.158 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 150 :EGVQINGGP 1xhnA 159 :TNIWVLDYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23218 # 1n62B.150.677 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)G156 (1n62B)D684 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1n62B)C686 because G (3-10) conformation "forbidden" or filtered. T0506 150 :EGVQIN 1n62B 678 :RRFYAL T0506 157 :G 1n62B 685 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=23220 # 1vkhA.150.156 read from T0506.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0506)G157 (1vkhA)G152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1vkhA)I153 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :EGVQING 1vkhA 145 :KRVFLLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23221 # 1nmoA.150.165 read from T0506.t2k.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)I154 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1nmoA)C171 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :EGVQ 1nmoA 166 :QRVA T0506 156 :GGP 1nmoA 172 :TGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23223 # 1uxoA.150.92 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P158 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :EGVQINGG 1uxoA 91 :GGIILVSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23224 # 1w0pA.150.491 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)G156 (1w0pA)Q498 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1w0pA)G500 because L (left) conformation "forbidden" or filtered. T0506 150 :EGVQIN 1w0pA 492 :QKIVLT T0506 157 :G 1w0pA 499 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=23226 # 1jmkC.150.99 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)G157 (1jmkC)S108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1jmkC)Y109 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :EGVQING 1jmkC 101 :QRIIMVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23227 # 1qwoA.150.49 read from T0506.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0506)G156 (1qwoA)S57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1qwoA)R58 because P (beta_P) conformation "forbidden" or filtered. T0506 150 :EGVQIN 1qwoA 51 :TLVQVL T0506 158 :P 1qwoA 59 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=23229 # 1vqoM.150.115 read from T0506.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0506)G151 (1vqoM)N116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1vqoM)Y118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1vqoM)D123 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1vqoM 115 :L T0506 152 :V 1vqoM 117 :S T0506 154 :INGG 1vqoM 119 :SVGQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=23232 # 1i31A.150.209 read from T0506.t2k.many.frag # found chain 1i31A in template set Warning: unaligning (T0506)P158 (1i31A)K339 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :EGVQINGG 1i31A 331 :SGVQVICM Number of specific fragments extracted= 1 number of extra gaps= 1 total=23233 # 1kmvA.150.109 read from T0506.t2k.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G151 (1kmvA)M111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 150 :E 1kmvA 110 :D T0506 152 :VQIN 1kmvA 112 :VWIV T0506 158 :P 1kmvA 118 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=23236 # 1e4fT.150.228 read from T0506.t2k.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)G156 (1e4fT)P235 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1e4fT)G237 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :EGVQIN 1e4fT 229 :IKISYV T0506 157 :G 1e4fT 236 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=23238 # 1xqwA.150.122 read from T0506.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0506)G151 (1xqwA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xqwA)G130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1xqwA)L131 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1xqwA 123 :K T0506 152 :VQING 1xqwA 125 :LIVSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=23240 # 1ok7A.150.164 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)G156 (1ok7A)A171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1ok7A)T172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ok7A)D173 because G (3-10) conformation "forbidden" or filtered. T0506 150 :EGVQIN 1ok7A 165 :EELRTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23241 # 1o12A.150.15 read from T0506.t2k.many.frag # found chain 1o12A in template set T0506 150 :EGVQINGGP 1o12A 4 :EKVLIVDPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23242 # 1nnwA.150.34 read from T0506.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0506)G151 (1nnwA)K36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1nnwA)N42 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1nnwA)N42 T0506 150 :E 1nnwA 35 :E T0506 152 :VQIN 1nnwA 37 :YYIL T0506 158 :P 1nnwA 43 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=23245 # 1vefA.150.329 read from T0506.t2k.many.frag # found chain 1vefA in template set Warning: unaligning (T0506)G151 (1vefA)E331 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1vefA)R333 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1vefA)L337 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1vefA)M338 because D (zeta) conformation "forbidden" or filtered. T0506 150 :E 1vefA 330 :R T0506 152 :V 1vefA 332 :V T0506 154 :ING 1vefA 334 :GMG Number of specific fragments extracted= 3 number of extra gaps= 3 total=23248 1iwmA expands to /projects/compbio/data/pdb/1iwm.pdb.gz 1iwmA:# 1iwmA.150.79 read from T0506.t2k.many.frag # adding 1iwmA to template set # found chain 1iwmA in template set Warning: unaligning (T0506)E150 (1iwmA)G80 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1iwmA)D86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iwmA)K88 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQIN 1iwmA 81 :NVQLV T0506 157 :G 1iwmA 87 :N Number of specific fragments extracted= 2 number of extra gaps= 3 total=23250 # 1nbcA.150.55 read from T0506.t2k.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)G151 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. T0506 150 :E 1nbcA 56 :D T0506 152 :V 1nbcA 58 :A T0506 154 :INGG 1nbcA 60 :IIGS Number of specific fragments extracted= 3 number of extra gaps= 3 total=23253 # 1tvgA.150.69 read from T0506.t2k.many.frag # found chain 1tvgA in training set Warning: unaligning (T0506)P158 (1tvgA)F68 because T (delta_L) conformation "forbidden" or filtered. T0506 150 :EGVQINGG 1tvgA 60 :ERLVIQSY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23254 # 1i2aA.150.196 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)N155 (1i2aA)K202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. T0506 150 :EGVQI 1i2aA 197 :KDAYV T0506 156 :GG 1i2aA 203 :LT Number of specific fragments extracted= 2 number of extra gaps= 2 total=23256 1vetB expands to /projects/compbio/data/pdb/1vet.pdb.gz 1vetB:# 1vetB.150.19 read from T0506.t2k.many.frag # adding 1vetB to template set # found chain 1vetB in template set Warning: unaligning (T0506)G151 (1vetB)S21 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1vetB)L23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1vetB)L25 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1vetB 20 :Q T0506 152 :V 1vetB 22 :T T0506 154 :I 1vetB 24 :L T0506 156 :GGP 1vetB 26 :NNE Number of specific fragments extracted= 4 number of extra gaps= 3 total=23260 # 1r1mA.150.46 read from T0506.t2k.many.frag # found chain 1r1mA in template set Warning: unaligning (T0506)G151 (1r1mA)S112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1r1mA)T119 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :E 1r1mA 111 :Q T0506 152 :VQINGG 1r1mA 113 :VRVEGH Number of specific fragments extracted= 2 number of extra gaps= 2 total=23262 # 1p3dA.150.337 read from T0506.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0506)E150 (1p3dA)G338 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1p3dA)D344 because P (beta_P) conformation "forbidden" or filtered. T0506 151 :GVQIN 1p3dA 339 :KVRLV T0506 157 :GP 1p3dA 345 :DY Number of specific fragments extracted= 2 number of extra gaps= 2 total=23264 # 1iq4A.150.31 read from T0506.t2k.many.frag # found chain 1iq4A in training set Warning: unaligning (T0506)G156 (1iq4A)M38 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iq4A)V40 because D (zeta) conformation "forbidden" or filtered. T0506 150 :EGVQIN 1iq4A 32 :EKIVIN T0506 157 :G 1iq4A 39 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=23266 1k8qA expands to /projects/compbio/data/pdb/1k8q.pdb.gz 1k8qA:# 1k8qA.150.173 read from T0506.t2k.many.frag # adding 1k8qA to template set # found chain 1k8qA in template set Warning: unaligning (T0506)G157 (1k8qA)P181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1k8qA)V182 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :EGVQING 1k8qA 174 :KTFYALA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23267 # 1oewA.150.210 read from T0506.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0506)G151 (1oewA)S212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1oewA)A217 because N (gamma') conformation "forbidden" or filtered. T0506 150 :E 1oewA 211 :T T0506 152 :VQIN 1oewA 213 :IDGI T0506 157 :GP 1oewA 218 :DT Number of specific fragments extracted= 3 number of extra gaps= 2 total=23270 # 1ryiA.150.331 read from T0506.t2k.many.frag # found chain 1ryiA in training set Warning: unaligning (T0506)G156 (1ryiA)A325 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :EGVQIN 1ryiA 319 :SRILFA T0506 157 :GP 1ryiA 326 :GH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23272 # 1h72C.150.249 read from T0506.t2k.many.frag # found chain 1h72C in training set Warning: unaligning (T0506)Q153 (1h72C)T257 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1h72C)S259 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1h72C)S261 because G (3-10) conformation "forbidden" or filtered. T0506 150 :EGV 1h72C 254 :YGI T0506 154 :I 1h72C 258 :I T0506 156 :G 1h72C 260 :G T0506 158 :P 1h72C 262 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=23276 # 1qhdA.150.327 read from T0506.t2k.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)G151 (1qhdA)S328 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1qhdA)S333 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1qhdA)L335 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1qhdA 327 :E T0506 152 :VQIN 1qhdA 329 :AVCE T0506 157 :G 1qhdA 334 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=23279 # 1xhnA.151.159 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. T0506 151 :GVQIN 1xhnA 160 :NIWVL T0506 158 :PA 1xhnA 167 :FG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23281 # 1uxoA.151.93 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)G151 (1uxoA)G92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :VQINGG 1uxoA 93 :IILVSG T0506 159 :A 1uxoA 100 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=23283 # 1n62B.151.678 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)N155 (1n62B)L683 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1n62B)D684 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1n62B)D685 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1n62B)C686 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQI 1n62B 679 :RFYA T0506 159 :A 1n62B 687 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23285 # 1vkhA.151.157 read from T0506.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0506)G151 (1vkhA)R146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1vkhA)G152 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1vkhA)I153 because E (beta_S) conformation "forbidden" or filtered. T0506 152 :VQING 1vkhA 147 :VFLLD T0506 159 :A 1vkhA 154 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=23287 # 1iwmA.151.80 read from T0506.t2k.many.frag # found chain 1iwmA in template set Warning: unaligning (T0506)Q153 (1iwmA)Q83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iwmA)K88 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GV 1iwmA 81 :NV T0506 154 :INGG 1iwmA 84 :LVDN T0506 159 :A 1iwmA 89 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=23290 # 1w0pA.151.492 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)N155 (1w0pA)T497 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1w0pA)Q498 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1w0pA)G500 because L (left) conformation "forbidden" or filtered. T0506 151 :GVQI 1w0pA 493 :KIVL T0506 157 :G 1w0pA 499 :Q T0506 159 :A 1w0pA 501 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=23293 # 1qwoA.151.50 read from T0506.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0506)G151 (1qwoA)L52 because E (beta_S) conformation "forbidden" or filtered. T0506 152 :VQINGGPA 1qwoA 53 :VQVLSRHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23294 # 1nmoA.151.166 read from T0506.t2k.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)G151 (1nmoA)R167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I154 (1nmoA)W170 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1nmoA)C171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nmoA)G175 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQ 1nmoA 168 :VA T0506 158 :P 1nmoA 174 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=23296 1thtA expands to /projects/compbio/data/pdb/1tht.pdb.gz 1thtA:# 1thtA.151.36 read from T0506.t2k.many.frag # adding 1thtA to template set # found chain 1thtA in template set Warning: unaligning (T0506)G156 (1thtA)S42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1thtA)G43 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1thtA)F44 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQIN 1thtA 37 :TILIA T0506 159 :A 1thtA 45 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23298 # 1jmkC.151.100 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)P158 (1jmkC)Y109 because E (beta_S) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1jmkC 102 :RIIMVDS T0506 159 :A 1jmkC 110 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=23300 # 1vqoM.151.116 read from T0506.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0506)G151 (1vqoM)N116 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1vqoM)Q122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1vqoM)D123 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :VQING 1vqoM 117 :SYSVG T0506 159 :A 1vqoM 124 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=23302 # 1i31A.151.210 read from T0506.t2k.many.frag # found chain 1i31A in template set Warning: unaligning (T0506)P158 (1i31A)K339 because E (beta_S) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1i31A 332 :GVQVICM T0506 159 :A 1i31A 340 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23304 # 1vetB.151.20 read from T0506.t2k.many.frag # found chain 1vetB in template set Warning: unaligning (T0506)G156 (1vetB)N26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1vetB)G29 because T (delta_L) conformation "forbidden" or filtered. T0506 151 :GVQIN 1vetB 21 :STLLL T0506 157 :GP 1vetB 27 :NE Number of specific fragments extracted= 2 number of extra gaps= 2 total=23306 # 1nbcA.151.56 read from T0506.t2k.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)G151 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. T0506 152 :V 1nbcA 58 :A T0506 154 :INGG 1nbcA 60 :IIGS T0506 159 :A 1nbcA 65 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=23309 # 1xqwA.151.123 read from T0506.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0506)P158 (1xqwA)L131 because Y (epsilon') conformation "forbidden" or filtered. T0506 151 :GVQINGG 1xqwA 124 :GLIVSGG T0506 159 :A 1xqwA 132 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=23311 # 1o12A.151.16 read from T0506.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0506)G156 (1o12A)D10 because E (beta_S) conformation "forbidden" or filtered. T0506 151 :GVQIN 1o12A 5 :KVLIV T0506 157 :GPA 1o12A 11 :PID Number of specific fragments extracted= 2 number of extra gaps= 1 total=23313 # 1ok7A.151.165 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)P158 (1ok7A)D173 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1ok7A 166 :ELRTVAT T0506 159 :A 1ok7A 174 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23315 # 1nnwA.151.35 read from T0506.t2k.many.frag # found chain 1nnwA in template set Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1nnwA)N42 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1nnwA)N42 T0506 151 :GVQIN 1nnwA 36 :KYYIL T0506 158 :PA 1nnwA 43 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23317 # 1i2aA.151.197 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)G151 (1i2aA)D198 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQINGG 1i2aA 199 :AYVKLT T0506 159 :A 1i2aA 206 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=23319 1zgkA expands to /projects/compbio/data/pdb/1zgk.pdb.gz 1zgkA:Skipped atom 124, because occupancy 0.300 <= existing 0.700 in 1zgkA Skipped atom 126, because occupancy 0.300 <= existing 0.700 in 1zgkA Skipped atom 128, because occupancy 0.300 <= existing 0.700 in 1zgkA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 158, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 160, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 162, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 164, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 166, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 168, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 170, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 343, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 345, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 347, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 349, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 351, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 520, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 522, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 524, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 573, because occupancy 0.400 <= existing 0.600 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 655, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 659, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 801, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 811, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1007, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1009, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1011, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1353, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1357, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1359, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1361, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1363, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1365, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1367, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1369, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1407, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1409, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1411, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1413, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1415, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1417, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1424, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1426, because occupancy 0.350 <= existing 0.350 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1428, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1529, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1531, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1533, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1661, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1663, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1665, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1774, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2011, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2015, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2017, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2019, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2093, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2095, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2097, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2133, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2135, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2137, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2184, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2188, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2190, because occupancy 0.500 <= existing 0.500 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2192, because occupancy 0.350 <= existing 0.350 in 1zgkA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2194, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2246, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2250, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2252, because occupancy 0.500 <= existing 0.500 in 1zgkA Skipped atom 2254, because occupancy 0.500 <= existing 0.500 in 1zgkA # 1zgkA.151.263 read from T0506.t2k.many.frag # adding 1zgkA to template set # found chain 1zgkA in template set Warning: unaligning (T0506)G156 (1zgkA)G570 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1zgkA)Y572 because E (beta_S) conformation "forbidden" or filtered. T0506 151 :GVQIN 1zgkA 565 :RIYVL T0506 157 :G 1zgkA 571 :G T0506 159 :A 1zgkA 573 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=23322 # 1p3dA.151.338 read from T0506.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0506)G151 (1p3dA)K339 because P (beta_P) conformation "forbidden" or filtered. T0506 152 :VQINGGPA 1p3dA 340 :VRLVDDYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23323 # 1kmvA.151.110 read from T0506.t2k.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G151 (1kmvA)M111 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1kmvA)V115 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)G157 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 152 :VQI 1kmvA 112 :VWI T0506 158 :PA 1kmvA 118 :SS Number of specific fragments extracted= 2 number of extra gaps= 2 total=23325 # 1suuA.151.163 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)G151 (1suuA)K662 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQINGG 1suuA 663 :VICLSK T0506 159 :A 1suuA 670 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=23327 1g3kA expands to /projects/compbio/data/pdb/1g3k.pdb.gz 1g3kA:# 1g3kA.151.101 read from T0506.t2k.many.frag # adding 1g3kA to template set # found chain 1g3kA in template set Warning: unaligning (T0506)G151 (1g3kA)E102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1g3kA)G110 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQINGGP 1g3kA 103 :SLIITGI Number of specific fragments extracted= 1 number of extra gaps= 2 total=23328 # 1tvgA.151.70 read from T0506.t2k.many.frag # found chain 1tvgA in training set Warning: unaligning (T0506)G156 (1tvgA)S66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1tvgA)Y67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tvgA)F68 because T (delta_L) conformation "forbidden" or filtered. T0506 151 :GVQIN 1tvgA 61 :RLVIQ T0506 159 :A 1tvgA 69 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23330 # 1yrtA.151.311 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)G156 (1yrtA)S317 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQIN 1yrtA 312 :KIFVV T0506 157 :G 1yrtA 318 :A T0506 159 :A 1yrtA 320 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=23333 # 1k8qA.151.174 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)P158 (1k8qA)V182 because E (beta_S) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1k8qA 175 :TFYALAP T0506 159 :A 1k8qA 183 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23335 # 1ig0A.151.184 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)P158 (1ig0A)I192 because E (beta_S) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1ig0A 185 :SLLALGG T0506 159 :A 1ig0A 193 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=23337 # 1oewA.151.211 read from T0506.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0506)I154 (1oewA)G215 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1oewA)A217 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1oewA)D218 because D (zeta) conformation "forbidden" or filtered. T0506 151 :GVQ 1oewA 212 :SID T0506 155 :N 1oewA 216 :I T0506 158 :PA 1oewA 219 :TG Number of specific fragments extracted= 3 number of extra gaps= 2 total=23340 # 1rcqA.151.151 read from T0506.t2k.many.frag # found chain 1rcqA in training set T0506 151 :GVQINGGPA 1rcqA 152 :KIVMMSHFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=23341 # 1xhnA.152.160 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xhnA)G169 because S (epsilon) conformation "forbidden" or filtered. T0506 152 :VQINGGP 1xhnA 161 :IWVLDYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23342 # 1uxoA.152.94 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P158 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :VQINGG 1uxoA 93 :IILVSG T0506 159 :AR 1uxoA 100 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23344 # 1iwmA.152.81 read from T0506.t2k.many.frag # found chain 1iwmA in template set Warning: unaligning (T0506)Q153 (1iwmA)Q83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iwmA)K88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1iwmA)Q90 because P (beta_P) conformation "forbidden" or filtered. T0506 152 :V 1iwmA 82 :V T0506 154 :INGG 1iwmA 84 :LVDN T0506 159 :A 1iwmA 89 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=23347 # 1n62B.152.679 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)G157 (1n62B)D685 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1n62B)C686 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQING 1n62B 680 :FYALD T0506 159 :AR 1n62B 687 :GT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23349 # 1vqoM.152.117 read from T0506.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0506)Q153 (1vqoM)Y118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1vqoM)Q122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1vqoM)D123 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :V 1vqoM 117 :S T0506 154 :ING 1vqoM 119 :SVG T0506 159 :AR 1vqoM 124 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=23352 # 1qwoA.152.51 read from T0506.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0506)G157 (1qwoA)R58 because P (beta_P) conformation "forbidden" or filtered. T0506 152 :VQING 1qwoA 53 :VQVLS T0506 158 :PAR 1qwoA 59 :HGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23354 # 1suuA.152.164 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)Q153 (1suuA)I664 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1suuA)S667 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1suuA)G670 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :V 1suuA 663 :V T0506 154 :IN 1suuA 665 :CL T0506 157 :G 1suuA 668 :K T0506 160 :R 1suuA 671 :S Number of specific fragments extracted= 4 number of extra gaps= 3 total=23358 # 1thtA.152.37 read from T0506.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0506)Q153 (1thtA)L39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1thtA)F44 because G (3-10) conformation "forbidden" or filtered. T0506 152 :V 1thtA 38 :I T0506 154 :INGG 1thtA 40 :IASG T0506 159 :AR 1thtA 45 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=23361 # 1i31A.152.211 read from T0506.t2k.many.frag # found chain 1i31A in template set Warning: unaligning (T0506)P158 (1i31A)K339 because E (beta_S) conformation "forbidden" or filtered. T0506 152 :VQINGG 1i31A 333 :VQVICM T0506 159 :AR 1i31A 340 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23363 # 1nwzA.152.29 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)G156 (1nwzA)D34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nwzA)D36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nwzA)G37 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQIN 1nwzA 30 :AIQL T0506 157 :G 1nwzA 35 :G T0506 160 :R 1nwzA 38 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=23366 # 1g3kA.152.102 read from T0506.t2k.many.frag # found chain 1g3kA in template set Warning: unaligning (T0506)Q153 (1g3kA)L104 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1g3kA)D111 because S (epsilon) conformation "forbidden" or filtered. T0506 152 :V 1g3kA 103 :S T0506 154 :INGGPA 1g3kA 105 :IITGIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=23368 # 1i2aA.152.198 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)N155 (1i2aA)K202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1i2aA)L203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQI 1i2aA 199 :AYV T0506 157 :G 1i2aA 204 :T T0506 159 :AR 1i2aA 206 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=23371 # 1yrtA.152.312 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1yrtA)G320 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQINGG 1yrtA 313 :IFVVSA T0506 160 :R 1yrtA 321 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=23373 # 1w0pA.152.493 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)P158 (1w0pA)G500 because L (left) conformation "forbidden" or filtered. T0506 152 :VQINGG 1w0pA 494 :IVLTQQ T0506 159 :AR 1w0pA 501 :HN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23375 # 1zgkA.152.264 read from T0506.t2k.many.frag # found chain 1zgkA in template set Warning: unaligning (T0506)P158 (1zgkA)Y572 because E (beta_S) conformation "forbidden" or filtered. T0506 152 :VQINGG 1zgkA 566 :IYVLGG T0506 159 :AR 1zgkA 573 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=23377 # 1vetB.152.21 read from T0506.t2k.many.frag # found chain 1vetB in template set Warning: unaligning (T0506)G156 (1vetB)N26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1vetB)G29 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQIN 1vetB 22 :TLLL T0506 157 :GP 1vetB 27 :NE T0506 160 :R 1vetB 30 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=23380 # 1vkhA.152.158 read from T0506.t2k.many.frag # found chain 1vkhA in template set Warning: unaligning (T0506)P158 (1vkhA)I153 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1vkhA)S155 because D (zeta) conformation "forbidden" or filtered. T0506 152 :VQINGG 1vkhA 147 :VFLLDG T0506 159 :A 1vkhA 154 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=23382 # 1ok7A.152.166 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)G157 (1ok7A)T172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ok7A)D173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ok7A)G174 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQING 1ok7A 167 :LRTVA T0506 160 :R 1ok7A 175 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=23384 # 1xqwA.152.124 read from T0506.t2k.many.frag # found chain 1xqwA in template set Warning: unaligning (T0506)N155 (1xqwA)S128 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1xqwA)L131 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :VQI 1xqwA 125 :LIV T0506 156 :GG 1xqwA 129 :GG T0506 159 :AR 1xqwA 132 :SS Number of specific fragments extracted= 3 number of extra gaps= 2 total=23387 # 1nbcA.152.57 read from T0506.t2k.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. T0506 152 :V 1nbcA 58 :A T0506 154 :INGG 1nbcA 60 :IIGS T0506 159 :AR 1nbcA 65 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=23390 # 1p3dA.152.339 read from T0506.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0506)G157 (1p3dA)D345 because E (beta_S) conformation "forbidden" or filtered. T0506 152 :VQING 1p3dA 340 :VRLVD T0506 158 :PAR 1p3dA 346 :YGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23392 # 1wmhA.152.48 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQINGG 1wmhA 59 :MKWIDE T0506 159 :AR 1wmhA 66 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23394 2bt6A expands to /projects/compbio/data/pdb/2bt6.pdb.gz 2bt6A:Skipped atom 47, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 51, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 162, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 164, because occupancy 0.100 <= existing 0.500 in 2bt6A Skipped atom 166, because occupancy 0.100 <= existing 0.500 in 2bt6A Skipped atom 168, because occupancy 0.100 <= existing 0.500 in 2bt6A Skipped atom 170, because occupancy 0.100 <= existing 0.500 in 2bt6A Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 451, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 453, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 455, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 457, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 459, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 461, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 667, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 2bt6A Skipped atom 724, because occupancy 0.400 <= existing 0.600 in 2bt6A Skipped atom 728, because occupancy 0.400 <= existing 0.600 in 2bt6A Skipped atom 730, because occupancy 0.400 <= existing 0.600 in 2bt6A # 2bt6A.152.8 read from T0506.t2k.many.frag # adding 2bt6A to template set # found chain 2bt6A in template set Warning: unaligning (T0506)G156 (2bt6A)N13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (2bt6A)R14 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2bt6A)D15 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (2bt6A)G16 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQIN 2bt6A 9 :VHFI T0506 160 :R 2bt6A 17 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=23396 # 1k8qA.152.175 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)N155 (1k8qA)L179 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1k8qA)V182 because E (beta_S) conformation "forbidden" or filtered. T0506 152 :VQI 1k8qA 176 :FYA T0506 156 :GG 1k8qA 180 :AP T0506 159 :AR 1k8qA 183 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=23399 # 1ig0A.152.185 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)G157 (1ig0A)G191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ig0A)I192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ig0A)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1ig0A)G194 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :VQING 1ig0A 186 :LLALG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23400 # 1tif.152.15 read from T0506.t2k.many.frag # found chain 1tif in training set Warning: unaligning (T0506)N155 (1tif)I19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1tif)D20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1tif)G23 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQI 1tif 16 :VRL T0506 157 :G 1tif 21 :Q T0506 160 :R 1tif 24 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=23403 # 1umwA.152.84 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)N155 (1umwA)I454 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1umwA)E455 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1umwA)D457 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1umwA)G458 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQI 1umwA 451 :LQY T0506 157 :G 1umwA 456 :R T0506 160 :R 1umwA 459 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=23406 # 1o12A.152.17 read from T0506.t2k.many.frag # found chain 1o12A in template set Warning: unaligning (T0506)R160 (1o12A)G14 because S (epsilon) conformation "forbidden" or filtered. T0506 152 :VQINGGPA 1o12A 6 :VLIVDPID Number of specific fragments extracted= 1 number of extra gaps= 1 total=23407 # 1oewA.152.212 read from T0506.t2k.many.frag # found chain 1oewA in training set Warning: unaligning (T0506)G157 (1oewA)D218 because D (zeta) conformation "forbidden" or filtered. T0506 152 :VQING 1oewA 213 :IDGIA T0506 158 :PAR 1oewA 219 :TGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23409 # 1nmoA.152.167 read from T0506.t2k.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)G156 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nmoA)G175 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQIN 1nmoA 168 :VAWC T0506 157 :GP 1nmoA 173 :GG T0506 160 :R 1nmoA 176 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=23412 # 1xhnA.153.161 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QING 1xhnA 162 :WVLD T0506 158 :P 1xhnA 167 :F T0506 160 :RN 1xhnA 169 :GP Number of specific fragments extracted= 3 number of extra gaps= 2 total=23415 # 1suuA.153.165 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1suuA)G670 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1suuA)S671 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QINGG 1suuA 664 :ICLSK T0506 161 :N 1suuA 672 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=23417 # 1uxoA.153.95 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)N155 (1uxoA)V96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1uxoA)G98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1uxoA)S102 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QI 1uxoA 94 :IL T0506 156 :G 1uxoA 97 :S T0506 159 :A 1uxoA 100 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=23420 # 1iwmA.153.82 read from T0506.t2k.many.frag # found chain 1iwmA in template set Warning: unaligning (T0506)G156 (1iwmA)D86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iwmA)K88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1iwmA)R91 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QIN 1iwmA 83 :QLV T0506 157 :G 1iwmA 87 :N T0506 159 :AR 1iwmA 89 :GQ Number of specific fragments extracted= 3 number of extra gaps= 3 total=23423 # 1n62B.153.680 read from T0506.t2k.many.frag # found chain 1n62B in training set Warning: unaligning (T0506)Q153 (1n62B)Y681 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1n62B)D684 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1n62B)D685 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1n62B)C686 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1n62B)G687 because S (epsilon) conformation "forbidden" or filtered. T0506 154 :IN 1n62B 682 :AL T0506 160 :RN 1n62B 688 :TR Number of specific fragments extracted= 2 number of extra gaps= 2 total=23425 # 1i2aA.153.199 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)G156 (1i2aA)L203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1i2aA)P207 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QIN 1i2aA 200 :YVK T0506 157 :G 1i2aA 204 :T T0506 159 :A 1i2aA 206 :G T0506 161 :N 1i2aA 208 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=23429 # 1yrtA.153.313 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1yrtA)G320 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QINGG 1yrtA 314 :FVVSA T0506 160 :RN 1yrtA 321 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=23431 # 1g3kA.153.103 read from T0506.t2k.many.frag # found chain 1g3kA in template set Warning: unaligning (T0506)A159 (1g3kA)G110 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1g3kA)D111 because S (epsilon) conformation "forbidden" or filtered. T0506 153 :QINGGP 1g3kA 104 :LIITGI T0506 161 :N 1g3kA 112 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=23433 # 1vqoM.153.118 read from T0506.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0506)Q153 (1vqoM)Y118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1vqoM)V120 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1vqoM)D123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1vqoM)R125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1vqoM)Q126 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :I 1vqoM 119 :S T0506 156 :GG 1vqoM 121 :GQ T0506 159 :A 1vqoM 124 :G Number of specific fragments extracted= 3 number of extra gaps= 4 total=23436 # 1nwzA.153.30 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)P158 (1nwzA)D36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1nwzA)I39 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QINGG 1nwzA 31 :IQLDG T0506 159 :AR 1nwzA 37 :GN Number of specific fragments extracted= 2 number of extra gaps= 2 total=23438 # 1thtA.153.38 read from T0506.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0506)G156 (1thtA)S42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1thtA)F44 because G (3-10) conformation "forbidden" or filtered. T0506 153 :QIN 1thtA 39 :LIA T0506 157 :G 1thtA 43 :G T0506 159 :ARN 1thtA 45 :ARR Number of specific fragments extracted= 3 number of extra gaps= 2 total=23441 # 1i31A.153.212 read from T0506.t2k.many.frag # found chain 1i31A in template set Warning: unaligning (T0506)G156 (1i31A)C337 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i31A)K339 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1i31A)G340 because S (epsilon) conformation "forbidden" or filtered. T0506 153 :QIN 1i31A 334 :QVI T0506 157 :G 1i31A 338 :M T0506 160 :RN 1i31A 341 :KA Number of specific fragments extracted= 3 number of extra gaps= 2 total=23444 1tq5A expands to /projects/compbio/data/pdb/1tq5.pdb.gz 1tq5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tq5A.153.73 read from T0506.t2k.many.frag # adding 1tq5A to template set # found chain 1tq5A in template set Warning: unaligning (T0506)G157 (1tq5A)S78 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tq5A)M79 because Y (epsilon') conformation "forbidden" or filtered. T0506 153 :QING 1tq5A 74 :EHQD T0506 159 :ARN 1tq5A 80 :GNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23446 # 1zgkA.153.265 read from T0506.t2k.many.frag # found chain 1zgkA in template set Warning: unaligning (T0506)P158 (1zgkA)Y572 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1zgkA)G574 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QINGG 1zgkA 567 :YVLGG T0506 159 :A 1zgkA 573 :D T0506 161 :N 1zgkA 575 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=23449 # 1wmhA.153.49 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhA)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QINGG 1wmhA 60 :KWIDE T0506 160 :RN 1wmhA 67 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23451 # 1k8qA.153.176 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)P158 (1k8qA)V182 because E (beta_S) conformation "forbidden" or filtered. T0506 153 :QINGG 1k8qA 177 :YALAP T0506 159 :ARN 1k8qA 183 :ATV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23453 1sv6A expands to /projects/compbio/data/pdb/1sv6.pdb.gz 1sv6A:# 1sv6A.153.227 read from T0506.t2k.many.frag # adding 1sv6A to template set # found chain 1sv6A in template set Warning: unaligning (T0506)A159 (1sv6A)G234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1sv6A)M236 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QINGGP 1sv6A 228 :ILTGAL T0506 160 :R 1sv6A 235 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=23455 # 1pg6A.153.157 read from T0506.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0506)P158 (1pg6A)F156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1pg6A)G157 because S (epsilon) conformation "forbidden" or filtered. T0506 153 :QINGG 1pg6A 151 :LLANS T0506 160 :RN 1pg6A 158 :SI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23457 # 1qwoA.153.52 read from T0506.t2k.many.frag # found chain 1qwoA in training set Warning: unaligning (T0506)G156 (1qwoA)S57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1qwoA)G60 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1qwoA)R62 because Y (epsilon') conformation "forbidden" or filtered. T0506 153 :QIN 1qwoA 54 :QVL T0506 157 :GP 1qwoA 58 :RH T0506 160 :R 1qwoA 61 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=23460 # 1ig0A.153.186 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)P158 (1ig0A)I192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ig0A)G193 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1ig0A)G194 because Y (epsilon') conformation "forbidden" or filtered. T0506 153 :QINGG 1ig0A 187 :LALGG T0506 161 :N 1ig0A 195 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=23462 1wuaA expands to /projects/compbio/data/pdb/1wua.pdb.gz 1wuaA:Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 20, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 186, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 196, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 198, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1701, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1711, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1713, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1715, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1749, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1751, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1753, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1755, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1757, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1759, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1761, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1888, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1890, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1892, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1894, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1896, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1900, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2474, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2476, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2478, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2480, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2482, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2484, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2486, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2488, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2490, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2639, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2641, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2643, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2645, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2647, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2649, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2651, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2653, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2655, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2657, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2659, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2875, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2877, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2879, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2881, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2883, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2885, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2887, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 2889, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4237, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4239, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4241, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4243, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4245, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4247, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4249, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4251, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4253, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4377, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4379, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4381, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4383, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4385, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4387, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4389, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4391, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4393, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4616, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4618, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4620, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4622, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4624, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4626, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4628, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4630, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4660, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4662, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4664, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4666, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4668, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4670, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4672, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4674, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4694, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4696, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4698, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4700, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4702, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4704, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4882, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4884, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4886, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4888, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4890, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4892, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4894, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 4896, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5492, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5494, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5496, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5498, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5500, because occupancy 0.500 <= existing 0.500 in 1wuaA Skipped atom 5502, because occupancy 0.500 <= existing 0.500 in 1wuaA # 1wuaA.153.151 read from T0506.t2k.many.frag # adding 1wuaA to template set # found chain 1wuaA in template set Warning: unaligning (T0506)R160 (1wuaA)V159 because Y (epsilon') conformation "forbidden" or filtered. T0506 153 :QINGGPA 1wuaA 152 :VLDSGDG T0506 161 :N 1wuaA 160 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=23464 # 1xffA.153.178 read from T0506.t2k.many.frag # found chain 1xffA in training set Warning: unaligning (T0506)Q153 (1xffA)V179 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xffA)G185 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xffA)E186 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :INGGP 1xffA 180 :IGLGM T0506 161 :N 1xffA 187 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=23466 # 1oewA.153.213 read from T0506.t2k.many.frag # found chain 1oewA in training set T0506 153 :QINGGPARN 1oewA 214 :DGIADTGTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=23467 2auwA expands to /projects/compbio/data/pdb/2auw.pdb.gz 2auwA:Skipped atom 79, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 81, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 83, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 85, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 87, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 89, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 91, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 93, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 95, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 153, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 155, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 157, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 159, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 161, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 163, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 165, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 167, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 169, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 171, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 173, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 330, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 410, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 412, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 414, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 416, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 418, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 420, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 486, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 488, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 490, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 492, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 498, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 500, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 502, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 504, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 508, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 510, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 512, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 516, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 518, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 520, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 522, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 524, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 526, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 528, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 2auwA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 845, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 2auwA Skipped atom 924, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 926, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 928, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 930, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 932, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 934, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 936, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 938, because occupancy 0.400 <= existing 0.600 in 2auwA Skipped atom 940, because occupancy 0.400 <= existing 0.600 in 2auwA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2auwA.153.22 read from T0506.t2k.many.frag # adding 2auwA to template set # found chain 2auwA in template set Warning: unaligning (T0506)N155 (2auwA)T23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (2auwA)W24 because E (beta_S) conformation "forbidden" or filtered. T0506 153 :QI 2auwA 21 :RT T0506 157 :GPARN 2auwA 25 :STGEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23469 # 1umwA.153.85 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)P158 (1umwA)D457 because G (3-10) conformation "forbidden" or filtered. T0506 153 :QINGG 1umwA 452 :QYIER T0506 159 :ARN 1umwA 458 :GTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23471 # 1khxA.153.176 read from T0506.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0506)G156 (1khxA)K420 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1khxA)W422 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1khxA)G423 because S (epsilon) conformation "forbidden" or filtered. T0506 153 :QIN 1khxA 417 :SFV T0506 157 :G 1khxA 421 :G T0506 160 :RN 1khxA 424 :AE Number of specific fragments extracted= 3 number of extra gaps= 2 total=23474 # 1p3dA.153.340 read from T0506.t2k.many.frag # found chain 1p3dA in training set Warning: unaligning (T0506)A159 (1p3dA)G347 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1p3dA)H349 because E (beta_S) conformation "forbidden" or filtered. T0506 153 :QINGGP 1p3dA 341 :RLVDDY T0506 160 :R 1p3dA 348 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=23476 1fiqB expands to /projects/compbio/data/pdb/1fiq.pdb.gz 1fiqB:# 1fiqB.153.234 read from T0506.t2k.many.frag # adding 1fiqB to template set # found chain 1fiqB in template set Warning: unaligning (T0506)G156 (1fiqB)G457 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1fiqB)M459 because G (3-10) conformation "forbidden" or filtered. T0506 153 :QIN 1fiqB 454 :LCY T0506 157 :G 1fiqB 458 :G T0506 159 :ARN 1fiqB 460 :ADR Number of specific fragments extracted= 3 number of extra gaps= 2 total=23479 # 3nul.153.22 read from T0506.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0506)Q153 (3nul)A24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (3nul)D29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (3nul)G30 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :INGG 3nul 25 :ILGQ T0506 160 :RN 3nul 31 :SV Number of specific fragments extracted= 2 number of extra gaps= 2 total=23481 # 1xtoA.153.194 read from T0506.t2k.many.frag # found chain 1xtoA in template set Warning: unaligning (T0506)P158 (1xtoA)L200 because E (beta_S) conformation "forbidden" or filtered. T0506 153 :QINGG 1xtoA 195 :FYAPG T0506 159 :ARN 1xtoA 201 :GQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23483 # 1xhnA.154.162 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. T0506 154 :IN 1xhnA 163 :VL T0506 157 :GPARNA 1xhnA 166 :YFGGPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23485 # 1suuA.154.166 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1suuA)F673 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :INGG 1suuA 665 :CLSK T0506 159 :ARN 1suuA 670 :GSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=23487 # 1tq5A.154.74 read from T0506.t2k.many.frag # found chain 1tq5A in template set Warning: unaligning (T0506)G157 (1tq5A)S78 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tq5A)M79 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :ING 1tq5A 75 :HQD T0506 159 :ARNA 1tq5A 80 :GNKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23489 # 1uxoA.154.96 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P158 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :INGG 1uxoA 95 :LVSG T0506 159 :A 1uxoA 100 :A T0506 161 :NA 1uxoA 102 :SL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23492 # 1i2aA.154.200 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)N155 (1i2aA)K202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1i2aA)L203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1i2aA)G206 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :I 1i2aA 201 :V T0506 157 :G 1i2aA 204 :T T0506 160 :RNA 1i2aA 207 :PAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23495 # 1iwmA.154.83 read from T0506.t2k.many.frag # found chain 1iwmA in template set Warning: unaligning (T0506)G156 (1iwmA)D86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iwmA)K88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1iwmA)G89 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1iwmA)Q90 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1iwmA 84 :LV T0506 157 :G 1iwmA 87 :N T0506 161 :NA 1iwmA 91 :RY Number of specific fragments extracted= 3 number of extra gaps= 2 total=23498 # 1nwzA.154.31 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)N155 (1nwzA)L33 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1nwzA)G35 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nwzA)D36 because G (3-10) conformation "forbidden" or filtered. T0506 154 :I 1nwzA 32 :Q T0506 156 :G 1nwzA 34 :D T0506 159 :ARNA 1nwzA 37 :GNIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23501 # 1yrtA.154.314 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)N155 (1yrtA)V316 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1yrtA)S317 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1yrtA)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1yrtA)Q323 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :I 1yrtA 315 :V T0506 157 :G 1yrtA 318 :A T0506 160 :RN 1yrtA 321 :ES Number of specific fragments extracted= 3 number of extra gaps= 3 total=23504 # 1k8qA.154.177 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)G157 (1k8qA)P181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1k8qA)V182 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :ING 1k8qA 178 :ALA T0506 159 :ARNA 1k8qA 183 :ATVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23506 # 2auwA.154.23 read from T0506.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)G156 (2auwA)W24 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :IN 2auwA 22 :TT T0506 157 :GPARNA 2auwA 25 :STGEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23508 # 1sv6A.154.228 read from T0506.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)G156 (1sv6A)G231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1sv6A)G234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1sv6A)M236 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1sv6A 229 :LT T0506 157 :GP 1sv6A 232 :AL T0506 160 :R 1sv6A 235 :P T0506 162 :A 1sv6A 237 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=23512 # 1wmhA.154.50 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1wmhA)C69 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :INGG 1wmhA 61 :WIDE T0506 159 :ARN 1wmhA 66 :GDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=23514 # 1thtA.154.39 read from T0506.t2k.many.frag # found chain 1thtA in template set Warning: unaligning (T0506)G156 (1thtA)S42 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1thtA)F44 because G (3-10) conformation "forbidden" or filtered. T0506 154 :IN 1thtA 40 :IA T0506 157 :G 1thtA 43 :G T0506 159 :ARNA 1thtA 45 :ARRM Number of specific fragments extracted= 3 number of extra gaps= 2 total=23517 # 1zvtA.154.148 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)G156 (1zvtA)T647 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1zvtA 645 :AI T0506 157 :GPARNA 1zvtA 648 :QAGRML Number of specific fragments extracted= 2 number of extra gaps= 1 total=23519 # 1vqoM.154.119 read from T0506.t2k.many.frag # found chain 1vqoM in template set Warning: unaligning (T0506)P158 (1vqoM)D123 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1vqoM)R125 because G (3-10) conformation "forbidden" or filtered. T0506 154 :INGG 1vqoM 119 :SVGQ T0506 159 :A 1vqoM 124 :G T0506 161 :NA 1vqoM 126 :QK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23522 # 1g3kA.154.104 read from T0506.t2k.many.frag # found chain 1g3kA in template set T0506 154 :INGGPARNA 1g3kA 105 :IITGIGDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23523 # 1zgkA.154.266 read from T0506.t2k.many.frag # found chain 1zgkA in template set Warning: unaligning (T0506)P158 (1zgkA)Y572 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1zgkA)G574 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :INGG 1zgkA 568 :VLGG T0506 159 :A 1zgkA 573 :D T0506 161 :NA 1zgkA 575 :HT Number of specific fragments extracted= 3 number of extra gaps= 2 total=23526 1w66A expands to /projects/compbio/data/pdb/1w66.pdb.gz 1w66A:Skipped atom 80, because occupancy 0.460 <= existing 0.540 in 1w66A Skipped atom 82, because occupancy 0.460 <= existing 0.540 in 1w66A Skipped atom 876, because occupancy 0.180 <= existing 0.820 in 1w66A Skipped atom 878, because occupancy 0.180 <= existing 0.820 in 1w66A Skipped atom 1015, because occupancy 0.250 <= existing 0.750 in 1w66A Skipped atom 1017, because occupancy 0.250 <= existing 0.750 in 1w66A Skipped atom 1164, because occupancy 0.370 <= existing 0.630 in 1w66A Skipped atom 1166, because occupancy 0.370 <= existing 0.630 in 1w66A Skipped atom 1358, because occupancy 0.320 <= existing 0.680 in 1w66A Skipped atom 1361, because occupancy 0.320 <= existing 0.680 in 1w66A Skipped atom 1367, because occupancy 0.420 <= existing 0.580 in 1w66A Skipped atom 1369, because occupancy 0.420 <= existing 0.580 in 1w66A Skipped atom 1500, because occupancy 0.450 <= existing 0.550 in 1w66A Skipped atom 1502, because occupancy 0.450 <= existing 0.550 in 1w66A Skipped atom 1504, because occupancy 0.450 <= existing 0.550 in 1w66A Skipped atom 1506, because occupancy 0.450 <= existing 0.550 in 1w66A Skipped atom 1508, because occupancy 0.450 <= existing 0.550 in 1w66A Skipped atom 1537, because occupancy 0.450 <= existing 0.550 in 1w66A Skipped atom 1539, because occupancy 0.450 <= existing 0.550 in 1w66A Skipped atom 1541, because occupancy 0.450 <= existing 0.550 in 1w66A # 1w66A.154.156 read from T0506.t2k.many.frag # adding 1w66A to template set # found chain 1w66A in template set Warning: unaligning (T0506)P158 (1w66A)F159 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :INGG 1w66A 155 :TLHG T0506 159 :ARNA 1w66A 160 :ALNC Number of specific fragments extracted= 2 number of extra gaps= 1 total=23528 # 1wuaA.154.152 read from T0506.t2k.many.frag # found chain 1wuaA in template set Warning: unaligning (T0506)G156 (1wuaA)S155 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :IN 1wuaA 153 :LD T0506 157 :GPARNA 1wuaA 156 :GDGVTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23530 # 1i31A.154.213 read from T0506.t2k.many.frag # found chain 1i31A in template set Warning: unaligning (T0506)N155 (1i31A)I336 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i31A)K339 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1i31A)G340 because S (epsilon) conformation "forbidden" or filtered. T0506 154 :I 1i31A 335 :V T0506 156 :GG 1i31A 337 :CM T0506 160 :RNA 1i31A 341 :KAK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23533 # 1pg6A.154.158 read from T0506.t2k.many.frag # found chain 1pg6A in training set Warning: unaligning (T0506)G157 (1pg6A)S155 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1pg6A)F156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1pg6A)G157 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1pg6A)S158 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :ING 1pg6A 152 :LAN T0506 161 :NA 1pg6A 159 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23535 1yarA expands to /projects/compbio/data/pdb/1yar.pdb.gz 1yarA:Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 453, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 455, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 457, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 459, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 461, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 463, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 465, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 467, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 469, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 998, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1004, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1006, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1163, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1165, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1167, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1169, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1173, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1175, because occupancy 0.500 <= existing 0.500 in 1yarA Skipped atom 1177, because occupancy 0.500 <= existing 0.500 in 1yarA # 1yarA.154.68 read from T0506.t2k.many.frag # adding 1yarA to template set # found chain 1yarA in template set Warning: unaligning (T0506)G156 (1yarA)D71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1yarA)Y73 because G (3-10) conformation "forbidden" or filtered. T0506 154 :IN 1yarA 69 :LI T0506 157 :G 1yarA 72 :D T0506 159 :ARNA 1yarA 74 :VAAV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23538 # 1xffA.154.179 read from T0506.t2k.many.frag # found chain 1xffA in training set Warning: unaligning (T0506)G157 (1xffA)G183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xffA)E186 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1xffA)N187 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :ING 1xffA 180 :IGL T0506 158 :PA 1xffA 184 :MG T0506 162 :A 1xffA 188 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=23541 # 1t6eX.154.301 read from T0506.t2k.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)G157 (1t6eX)D305 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1t6eX)G306 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :ING 1t6eX 302 :LGL T0506 159 :ARNA 1t6eX 307 :GSDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=23543 # 1umwA.154.86 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)G156 (1umwA)E455 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1umwA)D457 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1umwA)G458 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1umwA)T459 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1umwA 453 :YI T0506 157 :G 1umwA 456 :R T0506 161 :NA 1umwA 460 :ES Number of specific fragments extracted= 3 number of extra gaps= 2 total=23546 # 1utcA.154.274 read from T0506.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)G156 (1utcA)T277 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1utcA)G280 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1utcA)Y281 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1utcA 275 :LI T0506 157 :GP 1utcA 278 :KY T0506 161 :NA 1utcA 282 :IH Number of specific fragments extracted= 3 number of extra gaps= 2 total=23549 # 1e19A.154.189 read from T0506.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0506)P158 (1e19A)G194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1e19A)G196 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1e19A)V197 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :INGG 1e19A 190 :IASG T0506 159 :A 1e19A 195 :G T0506 162 :A 1e19A 198 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=23552 # 1khxA.154.177 read from T0506.t2k.many.frag # found chain 1khxA in training set Warning: unaligning (T0506)G156 (1khxA)K420 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1khxA)W422 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :IN 1khxA 418 :FV T0506 157 :G 1khxA 421 :G T0506 159 :ARNA 1khxA 423 :GAEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=23555 # 3nul.154.23 read from T0506.t2k.many.frag # found chain 3nul in training set Warning: unaligning (T0506)G156 (3nul)G27 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (3nul)D29 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (3nul)G30 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :IN 3nul 25 :IL T0506 157 :G 3nul 28 :Q T0506 160 :RNA 3nul 31 :SVW Number of specific fragments extracted= 3 number of extra gaps= 2 total=23558 # 1regX.154.37 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)G156 (1regX)Q40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1regX)K42 because L (left) conformation "forbidden" or filtered. T0506 154 :IN 1regX 38 :IL T0506 157 :G 1regX 41 :K T0506 159 :ARNA 1regX 43 :GLYY Number of specific fragments extracted= 3 number of extra gaps= 2 total=23561 # 1xhnA.155.163 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1xhnA)P170 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :N 1xhnA 164 :L T0506 158 :P 1xhnA 167 :F T0506 160 :R 1xhnA 169 :G T0506 162 :AS 1xhnA 171 :KI Number of specific fragments extracted= 4 number of extra gaps= 3 total=23565 # 1suuA.155.167 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)N155 (1suuA)L666 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1suuA)S667 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1suuA 668 :K T0506 159 :ARNAS 1suuA 670 :GSAFI Number of specific fragments extracted= 2 number of extra gaps= 2 total=23567 # 2auwA.155.24 read from T0506.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)A159 (2auwA)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2auwA)E28 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :NGGP 2auwA 23 :TWST T0506 161 :NAS 2auwA 29 :VLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23569 # 1tq5A.155.75 read from T0506.t2k.many.frag # found chain 1tq5A in template set Warning: unaligning (T0506)G156 (1tq5A)D77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1tq5A)S78 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tq5A)M79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1tq5A)K82 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :N 1tq5A 76 :Q T0506 159 :AR 1tq5A 80 :GN T0506 162 :AS 1tq5A 83 :EQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=23572 # 1zvtA.155.149 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)A159 (1zvtA)G650 because T (delta_L) conformation "forbidden" or filtered. T0506 155 :NGGP 1zvtA 646 :ITQA T0506 160 :RNAS 1zvtA 651 :RMLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=23574 # 1nwzA.155.32 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)P158 (1nwzA)D36 because G (3-10) conformation "forbidden" or filtered. T0506 155 :NGG 1nwzA 33 :LDG T0506 159 :ARNAS 1nwzA 37 :GNILQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23576 # 1wmhA.155.51 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)N155 (1wmhA)I62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1wmhA)D63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1wmhA)C69 because E (beta_S) conformation "forbidden" or filtered. T0506 157 :G 1wmhA 64 :E T0506 159 :ARN 1wmhA 66 :GDP T0506 163 :S 1wmhA 70 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=23579 # 1yrtA.155.315 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)N155 (1yrtA)V316 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1yrtA)S317 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1yrtA)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1yrtA)E321 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :G 1yrtA 318 :A T0506 161 :NAS 1yrtA 322 :SQM Number of specific fragments extracted= 2 number of extra gaps= 2 total=23581 # 1i2aA.155.201 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)N155 (1i2aA)K202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1i2aA)A208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1i2aA)V209 because E (beta_S) conformation "forbidden" or filtered. T0506 156 :GG 1i2aA 203 :LT T0506 159 :AR 1i2aA 206 :GP T0506 163 :S 1i2aA 210 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=23584 # 1iwmA.155.84 read from T0506.t2k.many.frag # found chain 1iwmA in template set Warning: unaligning (T0506)G156 (1iwmA)D86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iwmA)K88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1iwmA)G89 because T (delta_L) conformation "forbidden" or filtered. T0506 155 :N 1iwmA 85 :V T0506 157 :G 1iwmA 87 :N T0506 160 :RNAS 1iwmA 90 :QRYT Number of specific fragments extracted= 3 number of extra gaps= 2 total=23587 # 1sv6A.155.229 read from T0506.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)N155 (1sv6A)T230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1sv6A)A232 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1sv6A)G234 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1sv6A)P235 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :G 1sv6A 231 :G T0506 158 :P 1sv6A 233 :L T0506 161 :NAS 1sv6A 236 :MVA Number of specific fragments extracted= 3 number of extra gaps= 3 total=23590 # 1wmhB.155.52 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1wmhB)L69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1wmhB)P70 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :NGG 1wmhB 62 :TDA T0506 159 :ARN 1wmhB 66 :GDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23592 # 1yarA.155.69 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)P158 (1yarA)Y73 because G (3-10) conformation "forbidden" or filtered. T0506 155 :NGG 1yarA 70 :IDD T0506 159 :ARNAS 1yarA 74 :VAAVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23594 # 1uxoA.155.97 read from T0506.t2k.many.frag # found chain 1uxoA in training set Warning: unaligning (T0506)P158 (1uxoA)F99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uxoA)K101 because Y (epsilon') conformation "forbidden" or filtered. T0506 155 :NGG 1uxoA 96 :VSG T0506 159 :A 1uxoA 100 :A T0506 161 :NAS 1uxoA 102 :SLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=23597 # 1xffA.155.180 read from T0506.t2k.many.frag # found chain 1xffA in training set Warning: unaligning (T0506)G156 (1xffA)L182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xffA)G183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xffA)G185 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1xffA)N187 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1xffA)F188 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :N 1xffA 181 :G T0506 158 :P 1xffA 184 :M T0506 160 :R 1xffA 186 :E T0506 163 :S 1xffA 189 :I Number of specific fragments extracted= 4 number of extra gaps= 3 total=23601 2bgcA expands to /projects/compbio/data/pdb/2bgc.pdb.gz 2bgcA:# 2bgcA.155.88 read from T0506.t2k.many.frag # adding 2bgcA to template set # found chain 2bgcA in template set Warning: unaligning (T0506)G156 (2bgcA)S89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2bgcA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :N 2bgcA 88 :I T0506 157 :G 2bgcA 90 :E T0506 159 :ARNAS 2bgcA 92 :ATAYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23604 # 1g3kA.155.105 read from T0506.t2k.many.frag # found chain 1g3kA in template set T0506 155 :NGGPARNAS 1g3kA 106 :ITGIGDVVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23605 # 1utcA.155.275 read from T0506.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)G156 (1utcA)T277 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1utcA)I282 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :N 1utcA 276 :I T0506 157 :GPAR 1utcA 278 :KYGY T0506 162 :AS 1utcA 283 :HL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23608 # 1w66A.155.157 read from T0506.t2k.many.frag # found chain 1w66A in template set Warning: unaligning (T0506)G156 (1w66A)H157 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1w66A)F159 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :N 1w66A 156 :L T0506 157 :G 1w66A 158 :G T0506 159 :ARNAS 1w66A 160 :ALNCD Number of specific fragments extracted= 3 number of extra gaps= 2 total=23611 # 1k8qA.155.178 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)P158 (1k8qA)V182 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :NGG 1k8qA 179 :LAP T0506 159 :ARNAS 1k8qA 183 :ATVKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23613 # 1e19A.155.190 read from T0506.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0506)P158 (1e19A)G194 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1e19A)G195 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1e19A)V197 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :NGG 1e19A 191 :ASG T0506 160 :R 1e19A 196 :G T0506 162 :AS 1e19A 198 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23616 # 1regX.155.38 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)G157 (1regX)K41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 155 :NG 1regX 39 :LQ T0506 160 :RNAS 1regX 44 :LYYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23618 1e0bA expands to /projects/compbio/data/pdb/1e0b.pdb.gz 1e0bA:# 1e0bA.155.31 read from T0506.t2k.many.frag # adding 1e0bA to template set # found chain 1e0bA in template set Warning: unaligning (T0506)N155 (1e0bA)T292 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1e0bA)N295 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1e0bA)G296 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1e0bA)S299 because Y (epsilon') conformation "forbidden" or filtered. T0506 156 :GG 1e0bA 293 :WK T0506 160 :RN 1e0bA 297 :AI T0506 163 :S 1e0bA 300 :H Number of specific fragments extracted= 3 number of extra gaps= 3 total=23621 # 1t6eX.155.302 read from T0506.t2k.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)G156 (1t6eX)L304 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1t6eX)G306 because T (delta_L) conformation "forbidden" or filtered. T0506 155 :N 1t6eX 303 :G T0506 157 :G 1t6eX 305 :D T0506 159 :ARNAS 1t6eX 307 :GSDWT Number of specific fragments extracted= 3 number of extra gaps= 2 total=23624 # 1umwA.155.87 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)G156 (1umwA)E455 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1umwA)D457 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1umwA)G458 because T (delta_L) conformation "forbidden" or filtered. T0506 155 :N 1umwA 454 :I T0506 157 :G 1umwA 456 :R T0506 160 :RNAS 1umwA 459 :TESY Number of specific fragments extracted= 3 number of extra gaps= 2 total=23627 1qb5D expands to /projects/compbio/data/pdb/1qb5.pdb.gz 1qb5D:# 1qb5D.155.39 read from T0506.t2k.many.frag # adding 1qb5D to template set # found chain 1qb5D in template set Warning: unaligning (T0506)P158 (1qb5D)T43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1qb5D)G44 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1qb5D)V46 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :NGG 1qb5D 40 :VSS T0506 160 :R 1qb5D 45 :G T0506 162 :AS 1qb5D 47 :WR Number of specific fragments extracted= 3 number of extra gaps= 2 total=23630 # 1h72C.155.254 read from T0506.t2k.many.frag # found chain 1h72C in training set Warning: unaligning (T0506)N155 (1h72C)S259 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1h72C)G260 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1h72C)S261 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1h72C)P263 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1h72C)S264 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :P 1h72C 262 :G T0506 161 :NAS 1h72C 265 :IIA Number of specific fragments extracted= 2 number of extra gaps= 2 total=23632 # 1wuaA.155.153 read from T0506.t2k.many.frag # found chain 1wuaA in template set T0506 155 :NGGPARNAS 1wuaA 154 :DSGDGVTHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23633 # 2c5qA.155.175 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)G157 (2c5qA)D178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2c5qA)G181 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (2c5qA)V183 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :NG 2c5qA 176 :AG T0506 158 :PA 2c5qA 179 :NN T0506 161 :N 2c5qA 182 :I T0506 163 :S 2c5qA 184 :R Number of specific fragments extracted= 4 number of extra gaps= 3 total=23637 # 1nh0A.155.46 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A159 (1nh0A)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1nh0A)G52 because S (epsilon) conformation "forbidden" or filtered. T0506 155 :NGGP 1nh0A 47 :IGGI T0506 161 :NAS 1nh0A 53 :FIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23639 # 1xhnA.156.164 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xhnA)G169 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1xhnA)P170 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :PA 1xhnA 167 :FG T0506 162 :ASN 1xhnA 171 :KIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=23641 # 1suuA.156.168 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)G156 (1suuA)S667 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1suuA)F675 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1suuA 668 :K T0506 159 :ARNAS 1suuA 670 :GSAFI Number of specific fragments extracted= 2 number of extra gaps= 3 total=23643 # 1wmhA.156.52 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhA)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1wmhA)P68 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :GG 1wmhA 63 :DE T0506 160 :R 1wmhA 67 :D T0506 162 :ASN 1wmhA 69 :CTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23646 # 2auwA.156.25 read from T0506.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)G156 (2auwA)W24 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2auwA)V29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (2auwA)V32 because E (beta_S) conformation "forbidden" or filtered. T0506 157 :GPAR 2auwA 25 :STGE T0506 162 :AS 2auwA 30 :LE Number of specific fragments extracted= 2 number of extra gaps= 3 total=23648 # 1zvtA.156.150 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)A159 (1zvtA)G650 because T (delta_L) conformation "forbidden" or filtered. T0506 156 :GGP 1zvtA 647 :TQA T0506 160 :RNASN 1zvtA 651 :RMLMF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23650 # 1wmhB.156.53 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)G156 (1wmhB)D63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhB)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :G 1wmhB 64 :A T0506 160 :RNASN 1wmhB 67 :DLLPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23652 # 1nwzA.156.33 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)P158 (1nwzA)D36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nwzA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1nwzA)N38 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :GG 1nwzA 34 :DG T0506 161 :NASN 1nwzA 39 :ILQY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23654 # 1yrtA.156.316 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1yrtA)Q323 because Y (epsilon') conformation "forbidden" or filtered. T0506 156 :GG 1yrtA 317 :SA T0506 159 :ARN 1yrtA 320 :GES T0506 163 :SN 1yrtA 324 :ML Number of specific fragments extracted= 3 number of extra gaps= 2 total=23657 # 1yfqA.156.118 read from T0506.t2k.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)G156 (1yfqA)S119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1yfqA)D121 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1yfqA 120 :W T0506 159 :ARNASN 1yfqA 122 :GLIEVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=23659 1lm8C expands to /projects/compbio/data/pdb/1lm8.pdb.gz 1lm8C:# 1lm8C.156.6 read from T0506.t2k.many.frag # adding 1lm8C to template set # found chain 1lm8C in template set Warning: unaligning (T0506)G156 (1lm8C)S23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1lm8C)D25 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1lm8C 24 :S T0506 159 :ARNASN 1lm8C 26 :GHEFIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=23661 # 1regX.156.39 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)P158 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 156 :GG 1regX 40 :QK T0506 160 :RNASN 1regX 44 :LYYIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23663 # 1tq5A.156.76 read from T0506.t2k.many.frag # found chain 1tq5A in template set Warning: unaligning (T0506)P158 (1tq5A)M79 because Y (epsilon') conformation "forbidden" or filtered. T0506 156 :GG 1tq5A 77 :DS T0506 159 :ARNASN 1tq5A 80 :GNKEQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23665 # 2bgcA.156.89 read from T0506.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0506)P158 (2bgcA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0506 156 :GG 2bgcA 89 :SE T0506 159 :ARNASN 2bgcA 92 :ATAYVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23667 1yroB expands to /projects/compbio/data/pdb/1yro.pdb.gz 1yroB:# 1yroB.156.171 read from T0506.t2k.many.frag # adding 1yroB to template set # found chain 1yroB in template set Warning: unaligning (T0506)G157 (1yroB)Y289 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1yroB)F290 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1yroB)G292 because S (epsilon) conformation "forbidden" or filtered. T0506 156 :G 1yroB 288 :Q T0506 159 :A 1yroB 291 :G T0506 161 :NASN 1yroB 293 :VSAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23670 # 2c5qA.156.176 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)G156 (2c5qA)G177 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2c5qA)G181 because S (epsilon) conformation "forbidden" or filtered. T0506 157 :GPA 2c5qA 178 :DNN T0506 161 :NASN 2c5qA 182 :IVRI Number of specific fragments extracted= 2 number of extra gaps= 2 total=23672 # 1sv6A.156.230 read from T0506.t2k.many.frag # found chain 1sv6A in template set T0506 156 :GGPARNASN 1sv6A 231 :GALGPMVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23673 # 1xffA.156.181 read from T0506.t2k.many.frag # found chain 1xffA in training set Warning: unaligning (T0506)G157 (1xffA)G183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xffA)G185 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1xffA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0506 156 :G 1xffA 182 :L T0506 158 :P 1xffA 184 :M T0506 160 :RNAS 1xffA 186 :ENFI Number of specific fragments extracted= 3 number of extra gaps= 3 total=23676 # 1umwA.156.88 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)G156 (1umwA)E455 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1umwA)D457 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1umwA)G458 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1umwA)T459 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1umwA)L463 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1umwA 456 :R T0506 161 :NAS 1umwA 460 :ESY Number of specific fragments extracted= 2 number of extra gaps= 3 total=23678 # 1i2aA.156.202 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1i2aA)V209 because E (beta_S) conformation "forbidden" or filtered. T0506 156 :GG 1i2aA 203 :LT T0506 159 :ARN 1i2aA 206 :GPA T0506 163 :SN 1i2aA 210 :KV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23681 # 1smxA.156.30 read from T0506.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0506)G156 (1smxA)Y60 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1smxA)R64 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPA 1smxA 61 :GAE T0506 161 :NASN 1smxA 65 :HGFL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23683 # 1e0bA.156.32 read from T0506.t2k.many.frag # found chain 1e0bA in template set Warning: unaligning (T0506)G156 (1e0bA)W293 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1e0bA)N295 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1e0bA)G296 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1e0bA)S299 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1e0bA 294 :K T0506 160 :RN 1e0bA 297 :AI T0506 163 :SN 1e0bA 300 :HH Number of specific fragments extracted= 3 number of extra gaps= 3 total=23686 # 1suuA.156.120 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)P158 (1suuA)S621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1suuA)G622 because T (delta_L) conformation "forbidden" or filtered. T0506 156 :GG 1suuA 619 :TA T0506 160 :RNASN 1suuA 623 :KIARF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23688 # 1iwmA.156.85 read from T0506.t2k.many.frag # found chain 1iwmA in template set Warning: unaligning (T0506)G156 (1iwmA)D86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iwmA)K88 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1iwmA)G89 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1iwmA)A94 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1iwmA 87 :N T0506 160 :RNAS 1iwmA 90 :QRYT Number of specific fragments extracted= 2 number of extra gaps= 3 total=23690 # 1yarA.156.70 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)P158 (1yarA)Y73 because G (3-10) conformation "forbidden" or filtered. T0506 156 :GG 1yarA 71 :DD T0506 159 :ARNASN 1yarA 74 :VAAVTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23692 # 1mhnA.156.39 read from T0506.t2k.many.frag # found chain 1mhnA in training set Warning: unaligning (T0506)P158 (1mhnA)Y130 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1mhnA)G131 because L (left) conformation "forbidden" or filtered. T0506 156 :GG 1mhnA 128 :TG T0506 160 :RNASN 1mhnA 132 :NREEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23694 # 1qb5D.156.40 read from T0506.t2k.many.frag # found chain 1qb5D in template set Warning: unaligning (T0506)G156 (1qb5D)S41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1qb5D)T43 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1qb5D)W47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1qb5D)I49 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :G 1qb5D 42 :S T0506 159 :ARN 1qb5D 44 :GGV T0506 163 :S 1qb5D 48 :R Number of specific fragments extracted= 3 number of extra gaps= 4 total=23697 # 1e19A.156.191 read from T0506.t2k.many.frag # found chain 1e19A in training set Warning: unaligning (T0506)G157 (1e19A)G193 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1e19A)G194 because L (left) conformation "forbidden" or filtered. T0506 156 :G 1e19A 192 :S T0506 159 :ARNASN 1e19A 195 :GGVPVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23699 # 1utcA.156.276 read from T0506.t2k.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)G156 (1utcA)T277 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPARNASN 1utcA 278 :KYGYIHLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=23700 # 1t6eX.156.303 read from T0506.t2k.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)G157 (1t6eX)D305 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1t6eX)G306 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1t6eX)G307 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1t6eX)S308 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :G 1t6eX 304 :L T0506 161 :NASN 1t6eX 309 :DWTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=23702 2b06A expands to /projects/compbio/data/pdb/2b06.pdb.gz 2b06A:Skipped atom 508, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 510, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 512, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 516, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 518, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 520, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 522, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1146, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1148, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1150, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1152, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1154, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1156, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1158, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1160, because occupancy 0.500 <= existing 0.500 in 2b06A Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 2b06A # 2b06A.156.102 read from T0506.t2k.many.frag # adding 2b06A to template set # found chain 2b06A in template set Warning: unaligning (T0506)P158 (2b06A)E105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (2b06A)G106 because Y (epsilon') conformation "forbidden" or filtered. T0506 156 :GG 2b06A 103 :SE T0506 160 :RNASN 2b06A 107 :EVSWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23704 # 1suuA.157.169 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1suuA 668 :K T0506 159 :ARNASNI 1suuA 670 :GSAFIFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23706 # 1xhnA.157.165 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xhnA)G169 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1xhnA)P170 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GP 1xhnA 166 :YF T0506 162 :ASNI 1xhnA 171 :KIVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23708 # 1wmhA.157.53 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1wmhA 64 :E T0506 159 :ARNASNI 1wmhA 66 :GDPCTVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23710 # 2auwA.157.26 read from T0506.t2k.many.frag # found chain 2auwA in template set T0506 157 :GPARNASNI 2auwA 25 :STGEVLEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23711 # 1yfqA.157.119 read from T0506.t2k.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)P158 (1yfqA)D121 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1yfqA 120 :W T0506 159 :ARNASNI 1yfqA 122 :GLIEVID Number of specific fragments extracted= 2 number of extra gaps= 1 total=23713 # 1lm8C.157.7 read from T0506.t2k.many.frag # found chain 1lm8C in template set Warning: unaligning (T0506)P158 (1lm8C)D25 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1lm8C)F29 because E (beta_S) conformation "forbidden" or filtered. T0506 157 :G 1lm8C 24 :S T0506 159 :ARN 1lm8C 26 :GHE T0506 163 :SNI 1lm8C 30 :IVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23716 # 1wmhB.157.54 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhB)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :G 1wmhB 64 :A T0506 160 :RNASNI 1wmhB 67 :DLLPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23718 # 1regX.157.40 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)P158 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :G 1regX 41 :K T0506 160 :RNASNI 1regX 44 :LYYIVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=23720 # 1yrtA.157.317 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1yrtA 318 :A T0506 159 :ARNASNI 1yrtA 320 :GESQMLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23722 # 1zvtA.157.151 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)A159 (1zvtA)G650 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1zvtA)L653 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1zvtA)F655 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :GP 1zvtA 648 :QA T0506 160 :RN 1zvtA 651 :RM T0506 163 :S 1zvtA 654 :M T0506 165 :I 1zvtA 656 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=23726 # 2b06A.157.103 read from T0506.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0506)P158 (2b06A)E105 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 2b06A 104 :E T0506 159 :ARNASNI 2b06A 106 :GEVSWVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23728 # 1nwzA.157.34 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)P158 (1nwzA)D36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nwzA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1nwzA)N38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1nwzA)I39 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :G 1nwzA 35 :G T0506 162 :ASNI 1nwzA 40 :LQYN Number of specific fragments extracted= 2 number of extra gaps= 1 total=23730 # 2bgcA.157.90 read from T0506.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0506)P158 (2bgcA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0506 157 :G 2bgcA 90 :E T0506 159 :ARNASNI 2bgcA 92 :ATAYVIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23732 # 1yroB.157.172 read from T0506.t2k.many.frag # found chain 1yroB in template set Warning: unaligning (T0506)P158 (1yroB)F290 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1yroB)G292 because S (epsilon) conformation "forbidden" or filtered. T0506 157 :G 1yroB 289 :Y T0506 159 :A 1yroB 291 :G T0506 161 :NASNI 1yroB 293 :VSALS Number of specific fragments extracted= 3 number of extra gaps= 2 total=23735 1xniA expands to /projects/compbio/data/pdb/1xni.pdb.gz 1xniA:# 1xniA.157.35 read from T0506.t2k.many.frag # adding 1xniA to template set # found chain 1xniA in template set Warning: unaligning (T0506)P158 (1xniA)D1521 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1xniA)D1526 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :G 1xniA 1520 :D T0506 159 :ARNA 1xniA 1522 :GYEC T0506 164 :NI 1xniA 1527 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=23738 # 1smxA.157.31 read from T0506.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0506)R160 (1smxA)R64 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPA 1smxA 61 :GAE T0506 161 :NASNI 1smxA 65 :HGFLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23740 # 2c5qA.157.177 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)G157 (2c5qA)D178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2c5qA)G181 because S (epsilon) conformation "forbidden" or filtered. T0506 158 :PA 2c5qA 179 :NN T0506 161 :NASNI 2c5qA 182 :IVRIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=23742 1cfzA expands to /projects/compbio/data/pdb/1cfz.pdb.gz 1cfzA:# 1cfzA.157.69 read from T0506.t2k.many.frag # adding 1cfzA to template set # found chain 1cfzA in template set T0506 157 :GPARNASNI 1cfzA 70 :APGTMMILR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23743 # 1w0pA.157.498 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)P158 (1w0pA)G500 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1w0pA)V504 because E (beta_S) conformation "forbidden" or filtered. T0506 157 :G 1w0pA 499 :Q T0506 159 :ARN 1w0pA 501 :HNL T0506 163 :SNI 1w0pA 505 :EFD Number of specific fragments extracted= 3 number of extra gaps= 2 total=23746 # 1tq5A.157.77 read from T0506.t2k.many.frag # found chain 1tq5A in template set Warning: unaligning (T0506)P158 (1tq5A)M79 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1tq5A 78 :S T0506 159 :ARNASNI 1tq5A 80 :GNKEQVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23748 # 1i2aA.157.203 read from T0506.t2k.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)P158 (1i2aA)M205 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1i2aA)K210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 because last residue in template chain is (1i2aA)K212 T0506 157 :G 1i2aA 204 :T T0506 159 :ARNA 1i2aA 206 :GPAV T0506 164 :N 1i2aA 211 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=23751 1s98A expands to /projects/compbio/data/pdb/1s98.pdb.gz 1s98A:# 1s98A.157.56 read from T0506.t2k.many.frag # adding 1s98A to template set # found chain 1s98A in template set Warning: unaligning (T0506)G157 (1s98A)D57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1s98A)K58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1s98A)G59 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNI 1s98A 60 :VKVVVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=23752 # 1umwA.157.89 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)P158 (1umwA)D457 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1umwA)G458 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1umwA)T459 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :G 1umwA 456 :R T0506 161 :NASNI 1umwA 460 :ESYLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=23754 # 1xffA.157.182 read from T0506.t2k.many.frag # found chain 1xffA in training set Warning: unaligning (T0506)R160 (1xffA)E186 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1xffA)A190 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :GPA 1xffA 183 :GMG T0506 161 :NAS 1xffA 187 :NFI T0506 165 :I 1xffA 191 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=23757 # 1sv6A.157.231 read from T0506.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)G157 (1sv6A)A232 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1sv6A)G234 because Y (epsilon') conformation "forbidden" or filtered. T0506 158 :P 1sv6A 233 :L T0506 160 :RNASNI 1sv6A 235 :PMVAVN Number of specific fragments extracted= 2 number of extra gaps= 2 total=23759 # 1e0bA.157.33 read from T0506.t2k.many.frag # found chain 1e0bA in template set Warning: unaligning (T0506)P158 (1e0bA)N295 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1e0bA 294 :K T0506 159 :ARNASNI 1e0bA 296 :GAISHHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23761 # 1tt7A.157.100 read from T0506.t2k.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)A159 (1tt7A)S103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1tt7A)Y105 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1tt7A)V108 because E (beta_S) conformation "forbidden" or filtered. T0506 157 :GP 1tt7A 101 :GL T0506 160 :R 1tt7A 104 :E T0506 162 :AS 1tt7A 106 :AS T0506 165 :I 1tt7A 109 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=23765 # 1suuA.157.121 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)P158 (1suuA)S621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1suuA)G622 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :G 1suuA 620 :A T0506 160 :RNASNI 1suuA 623 :KIARFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23767 # 1xeoA.157.112 read from T0506.t2k.many.frag # found chain 1xeoA in training set Warning: unaligning (T0506)P158 (1xeoA)D114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1xeoA)F118 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1xeoA 113 :R T0506 159 :ARN 1xeoA 115 :GKP T0506 163 :SNI 1xeoA 119 :ELE Number of specific fragments extracted= 3 number of extra gaps= 2 total=23770 # 1umgA.157.171 read from T0506.t2k.many.frag # found chain 1umgA in training set Warning: unaligning (T0506)A159 (1umgA)G176 because L (left) conformation "forbidden" or filtered. T0506 157 :GP 1umgA 174 :YQ T0506 160 :RNASNI 1umgA 177 :EAVMLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23772 # 1xhnA.158.166 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1xhnA)V173 because E (beta_S) conformation "forbidden" or filtered. T0506 158 :P 1xhnA 167 :F T0506 160 :RNAS 1xhnA 169 :GPKI T0506 165 :IT 1xhnA 174 :TP Number of specific fragments extracted= 3 number of extra gaps= 2 total=23775 # 1suuA.158.170 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)P158 (1suuA)K669 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1suuA)F673 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1suuA)F675 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARN 1suuA 670 :GSA T0506 163 :S 1suuA 674 :I T0506 165 :IT 1suuA 676 :NS Number of specific fragments extracted= 3 number of extra gaps= 3 total=23778 # 1yfqA.158.120 read from T0506.t2k.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)P158 (1yfqA)D121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1yfqA)I124 because E (beta_S) conformation "forbidden" or filtered. T0506 159 :AR 1yfqA 122 :GL T0506 162 :ASNIT 1yfqA 125 :EVIDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=23780 # 1lm8C.158.8 read from T0506.t2k.many.frag # found chain 1lm8C in template set Warning: unaligning (T0506)P158 (1lm8C)D25 because G (3-10) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1lm8C 26 :GHEFIVKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23781 # 2b06A.158.104 read from T0506.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0506)P158 (2b06A)E105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (2b06A)G106 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNASNIT 2b06A 107 :EVSWVQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23782 # 2auwA.158.27 read from T0506.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)A159 (2auwA)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 158 :P 2auwA 26 :T T0506 160 :RNASNIT 2auwA 28 :EVLEVDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23784 # 1wmhA.158.54 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1wmhA 66 :GDPCTVSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23785 # 1wmhB.158.55 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T166 (1wmhB)N73 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNASNI 1wmhB 66 :GDLLPLT Number of specific fragments extracted= 1 number of extra gaps= 2 total=23786 # 1regX.158.41 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)P158 (1regX)K42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNIT 1regX 44 :LYYIVHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=23787 # 1yroB.158.173 read from T0506.t2k.many.frag # found chain 1yroB in template set Warning: unaligning (T0506)P158 (1yroB)F290 because G (3-10) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1yroB 291 :GGVSALSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23788 # 1xniA.158.36 read from T0506.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0506)P158 (1xniA)D1521 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xniA)G1522 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xniA)Y1523 because P (beta_P) conformation "forbidden" or filtered. T0506 161 :NASNIT 1xniA 1524 :ECDVLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23789 # 1w0pA.158.499 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)P158 (1w0pA)G500 because L (left) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1w0pA 501 :HNLVEFDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23790 # 1smxA.158.32 read from T0506.t2k.many.frag # found chain 1smxA in training set T0506 158 :PARNASNIT 1smxA 62 :AERHGFLPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23791 # 2bgcA.158.91 read from T0506.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0506)P158 (2bgcA)Q91 because E (beta_S) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 2bgcA 92 :ATAYVIKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23792 # 1zvtA.158.152 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)A159 (1zvtA)G650 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1zvtA)R651 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1zvtA)F655 because Y (epsilon') conformation "forbidden" or filtered. T0506 158 :P 1zvtA 649 :A T0506 161 :NAS 1zvtA 652 :MLM T0506 165 :IT 1zvtA 656 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23795 # 1yrtA.158.318 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)P158 (1yrtA)T319 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1yrtA)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1yrtA)Q323 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RN 1yrtA 321 :ES T0506 163 :SNIT 1yrtA 324 :MLTR Number of specific fragments extracted= 2 number of extra gaps= 2 total=23797 # 1cfzA.158.70 read from T0506.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0506)T166 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. T0506 158 :PARNASNI 1cfzA 71 :PGTMMILR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23798 # 1nwzA.158.35 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)P158 (1nwzA)D36 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nwzA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1nwzA)Y42 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :RNAS 1nwzA 38 :NILQ T0506 165 :IT 1nwzA 43 :NA Number of specific fragments extracted= 2 number of extra gaps= 2 total=23800 # 1s98A.158.57 read from T0506.t2k.many.frag # found chain 1s98A in template set Warning: unaligning (T0506)P158 (1s98A)K58 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1s98A)G59 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1s98A)K61 because P (beta_P) conformation "forbidden" or filtered. T0506 160 :R 1s98A 60 :V T0506 162 :ASNIT 1s98A 62 :VVVDG Number of specific fragments extracted= 2 number of extra gaps= 2 total=23802 # 1tt7A.158.101 read from T0506.t2k.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)A159 (1tt7A)S103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1tt7A)Y105 because S (epsilon) conformation "forbidden" or filtered. T0506 158 :P 1tt7A 102 :L T0506 160 :R 1tt7A 104 :E T0506 162 :ASNIT 1tt7A 106 :ASVPG Number of specific fragments extracted= 3 number of extra gaps= 2 total=23805 # 2c5qA.158.178 read from T0506.t2k.many.frag # found chain 2c5qA in template set T0506 158 :PARNASNIT 2c5qA 179 :NNGIVRIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23806 # 1o4yA.158.204 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)P158 (1o4yA)G221 because T (delta_L) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1o4yA 222 :VKVRTVTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23807 # 1sv6A.158.232 read from T0506.t2k.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)A159 (1sv6A)G234 because Y (epsilon') conformation "forbidden" or filtered. T0506 158 :P 1sv6A 233 :L T0506 160 :RNASNIT 1sv6A 235 :PMVAVNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23809 1ikoP expands to /projects/compbio/data/pdb/1iko.pdb.gz 1ikoP:# 1ikoP.158.48 read from T0506.t2k.many.frag # adding 1ikoP to template set # found chain 1ikoP in template set Warning: unaligning (T0506)P158 (1ikoP)Y78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1ikoP)V84 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNAS 1ikoP 79 :YKVYM T0506 165 :IT 1ikoP 85 :DK Number of specific fragments extracted= 2 number of extra gaps= 2 total=23811 # 1vioA.158.217 read from T0506.t2k.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)A159 (1vioA)G217 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1vioA)L222 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :P 1vioA 216 :E T0506 160 :RNAS 1vioA 218 :EYRP T0506 165 :IT 1vioA 223 :TQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=23814 # 1suuA.158.122 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)P158 (1suuA)S621 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1suuA)G622 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNIT 1suuA 623 :KIARFES Number of specific fragments extracted= 1 number of extra gaps= 1 total=23815 # 2ahrA.158.146 read from T0506.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0506)P158 (2ahrA)F144 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (2ahrA)G145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2ahrA)T147 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :R 2ahrA 146 :S T0506 162 :ASNIT 2ahrA 148 :FDISE Number of specific fragments extracted= 2 number of extra gaps= 2 total=23817 # 1tq5A.158.78 read from T0506.t2k.many.frag # found chain 1tq5A in template set Warning: unaligning (T0506)P158 (1tq5A)M79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1tq5A)N81 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :A 1tq5A 80 :G T0506 161 :NASNIT 1tq5A 82 :KEQVPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=23819 # 1yarA.158.72 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)P158 (1yarA)Y73 because G (3-10) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1yarA 74 :VAAVTSGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23820 1l1dA expands to /projects/compbio/data/pdb/1l1d.pdb.gz 1l1dA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 945, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 947, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 949, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 951, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 953, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 955, because occupancy 0.480 <= existing 0.480 in 1l1dA Skipped atom 982, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 984, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 986, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 988, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 990, because occupancy 0.390 <= existing 0.580 in 1l1dA Skipped atom 992, because occupancy 0.390 <= existing 0.580 in 1l1dA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1l1dA.158.127 read from T0506.t2k.many.frag # adding 1l1dA to template set # found chain 1l1dA in template set Warning: unaligning (T0506)R160 (1l1dA)S500 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1l1dA)L501 because E (beta_S) conformation "forbidden" or filtered. T0506 158 :PA 1l1dA 498 :GA T0506 162 :ASNIT 1l1dA 502 :KFIPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23822 # 1xhnA.159.167 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)N161 (1xhnA)P170 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1xhnA)K171 because E (beta_S) conformation "forbidden" or filtered. T0506 159 :AR 1xhnA 168 :GG T0506 163 :SNITP 1xhnA 172 :IVTPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23824 # 1yfqA.159.121 read from T0506.t2k.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)N164 (1yfqA)I127 because E (beta_S) conformation "forbidden" or filtered. T0506 159 :ARNAS 1yfqA 122 :GLIEV T0506 165 :ITP 1yfqA 128 :DPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=23826 # 1lm8C.159.9 read from T0506.t2k.many.frag # found chain 1lm8C in template set Warning: unaligning (T0506)A159 (1lm8C)G26 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1lm8C)E28 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :R 1lm8C 27 :H T0506 162 :ASNITP 1lm8C 29 :FIVKRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=23828 # 1suuA.159.171 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)A162 (1suuA)F673 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1suuA)F675 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARN 1suuA 670 :GSA T0506 163 :S 1suuA 674 :I T0506 165 :ITP 1suuA 676 :NSR Number of specific fragments extracted= 3 number of extra gaps= 2 total=23831 # 1regX.159.42 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)A159 (1regX)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1regX 44 :LYYIVHFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23832 # 2b06A.159.105 read from T0506.t2k.many.frag # found chain 2b06A in template set T0506 159 :ARNASNITP 2b06A 106 :GEVSWVQKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23833 # 2auwA.159.28 read from T0506.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)A159 (2auwA)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNITP 2auwA 28 :EVLEVDVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23834 # 1yroB.159.174 read from T0506.t2k.many.frag # found chain 1yroB in template set T0506 159 :ARNASNITP 1yroB 291 :GGVSALSKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23835 # 1w0pA.159.500 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 159 :ARNASNITP 1w0pA 501 :HNLVEFDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23836 # 1wmhB.159.56 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)A159 (1wmhB)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 (1wmhB)T72 because G (3-10) conformation "forbidden" or filtered. T0506 160 :RNASN 1wmhB 67 :DLLPL T0506 166 :TP 1wmhB 73 :ND Number of specific fragments extracted= 2 number of extra gaps= 2 total=23838 # 1wmhA.159.55 read from T0506.t2k.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)T166 (1wmhA)S73 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNASNI 1wmhA 66 :GDPCTVS T0506 167 :P 1wmhA 74 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=23840 # 1xniA.159.37 read from T0506.t2k.many.frag # found chain 1xniA in template set T0506 159 :ARNASNITP 1xniA 1522 :GYECDVLGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23841 # 1smxA.159.33 read from T0506.t2k.many.frag # found chain 1smxA in training set T0506 159 :ARNASNITP 1smxA 63 :ERHGFLPLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23842 # 1s98A.159.58 read from T0506.t2k.many.frag # found chain 1s98A in template set Warning: unaligning (T0506)A162 (1s98A)V62 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1s98A)V64 because E (beta_S) conformation "forbidden" or filtered. T0506 159 :ARN 1s98A 59 :GVK T0506 163 :S 1s98A 63 :V T0506 165 :ITP 1s98A 65 :DGK Number of specific fragments extracted= 3 number of extra gaps= 2 total=23845 # 1cfzA.159.71 read from T0506.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0506)A159 (1cfzA)G72 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1cfzA)L77 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :RNAS 1cfzA 73 :TMMI T0506 165 :ITP 1cfzA 78 :RDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=23847 # 2bgcA.159.92 read from T0506.t2k.many.frag # found chain 2bgcA in template set T0506 159 :ARNASNITP 2bgcA 92 :ATAYVIKIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23848 # 1o4yA.159.205 read from T0506.t2k.many.frag # found chain 1o4yA in training set T0506 159 :ARNASNITP 1o4yA 222 :VKVRTVTRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23849 # 1tt7A.159.102 read from T0506.t2k.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)A159 (1tt7A)S103 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1tt7A)Y105 because S (epsilon) conformation "forbidden" or filtered. T0506 160 :R 1tt7A 104 :E T0506 162 :ASNITP 1tt7A 106 :ASVPGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=23851 # 1zvtA.159.153 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)N164 (1zvtA)F655 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNAS 1zvtA 650 :GRMLM T0506 165 :ITP 1zvtA 656 :PVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23853 # 1ws8A.159.44 read from T0506.t2k.many.frag # found chain 1ws8A in training set Warning: unaligning (T0506)A159 (1ws8A)H45 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1ws8A)V50 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNAS 1ws8A 46 :NVLQ T0506 165 :ITP 1ws8A 51 :DQE Number of specific fragments extracted= 2 number of extra gaps= 2 total=23855 # 1lb6A.159.125 read from T0506.t2k.many.frag # found chain 1lb6A in training set T0506 159 :ARNASNITP 1lb6A 472 :GYVTFMHLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23856 # 1yarA.159.73 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)I165 (1yarA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 159 :ARNASN 1yarA 74 :VAAVTS T0506 166 :TP 1yarA 81 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23858 # 1ikoP.159.49 read from T0506.t2k.many.frag # found chain 1ikoP in template set T0506 159 :ARNASNITP 1ikoP 79 :YKVYMVDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23859 2ajfE expands to /projects/compbio/data/pdb/2ajf.pdb.gz 2ajfE:# 2ajfE.159.61 read from T0506.t2k.many.frag # adding 2ajfE to template set # found chain 2ajfE in template set Warning: unaligning (T0506)A162 (2ajfE)F387 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARN 2ajfE 384 :ADS T0506 163 :SNITP 2ajfE 388 :VVKGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23861 # 2c5qA.159.179 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)P167 (2c5qA)Q188 because G (3-10) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 2c5qA 180 :NGIVRIPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23862 # 1nwzA.159.36 read from T0506.t2k.many.frag # found chain 1nwzA in training set Warning: unaligning (T0506)A159 (1nwzA)G37 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1nwzA 38 :NILQYNAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=23863 # 1yrtA.159.319 read from T0506.t2k.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)A159 (1yrtA)G320 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1yrtA)Q323 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RN 1yrtA 321 :ES T0506 163 :SNITP 1yrtA 324 :MLTRG Number of specific fragments extracted= 2 number of extra gaps= 2 total=23865 # 2ahrA.159.147 read from T0506.t2k.many.frag # found chain 2ahrA in template set Warning: unaligning (T0506)A159 (2ahrA)G145 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNASNITP 2ahrA 146 :STFDISEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23866 2evrA expands to /projects/compbio/data/pdb/2evr.pdb.gz 2evrA:Skipped atom 8, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 14, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 121, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 123, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 125, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 127, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 129, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 131, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 133, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 135, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 151, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 155, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 157, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 159, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 161, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 163, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 195, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 238, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 242, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 244, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 340, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 342, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 344, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 346, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 348, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 350, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 352, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 354, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 356, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 358, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 360, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 362, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 364, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 366, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 368, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 370, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 653, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 657, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 659, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 791, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 793, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 795, because occupancy 0.500 <= existing 0.500 in 2evrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 827, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 831, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 833, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 835, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 837, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 839, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 842, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 846, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 848, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 878, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 2evrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1245, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1249, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1251, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1253, because occupancy 0.400 <= existing 0.600 in 2evrA Skipped atom 1321, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1325, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1327, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1668, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1672, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1674, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1676, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1678, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1680, because occupancy 0.300 <= existing 0.700 in 2evrA Skipped atom 1780, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1784, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1786, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1788, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1790, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1792, because occupancy 0.200 <= existing 0.800 in 2evrA Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 1806, because occupancy 0.500 <= existing 0.500 in 2evrA Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 2evrA # 2evrA.159.74 read from T0506.t2k.many.frag # adding 2evrA to template set # found chain 2evrA in template set Warning: unaligning (T0506)A159 (2evrA)D63 because L (left) conformation "forbidden" or filtered. T0506 160 :RNASNITP 2evrA 64 :YPGWLSLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=23867 # 1vioA.159.218 read from T0506.t2k.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)A159 (1vioA)G217 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1vioA)L222 because P (beta_P) conformation "forbidden" or filtered. T0506 160 :RNAS 1vioA 218 :EYRP T0506 165 :ITP 1vioA 223 :TQS Number of specific fragments extracted= 2 number of extra gaps= 2 total=23869 # 1yfqA.160.122 read from T0506.t2k.many.frag # found chain 1yfqA in training set T0506 160 :RNASNITPA 1yfqA 123 :LIEVIDPRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=23870 # 1xhnA.160.168 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)N161 (1xhnA)P170 because P (beta_P) conformation "forbidden" or filtered. T0506 160 :R 1xhnA 169 :G T0506 162 :ASNITPA 1xhnA 171 :KIVTPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23872 # 1lm8C.160.10 read from T0506.t2k.many.frag # found chain 1lm8C in template set T0506 160 :RNASNITPA 1lm8C 27 :HEFIVKREH Number of specific fragments extracted= 1 number of extra gaps= 0 total=23873 # 1regX.160.43 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 160 :RNASNITPA 1regX 44 :LYYIVHFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23874 # 2b06A.160.106 read from T0506.t2k.many.frag # found chain 2b06A in template set T0506 160 :RNASNITPA 2b06A 107 :EVSWVQKDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23875 # 1suuA.160.172 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)A162 (1suuA)F673 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RN 1suuA 671 :SA T0506 163 :SNITPA 1suuA 674 :IFNSRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23877 # 1yroB.160.175 read from T0506.t2k.many.frag # found chain 1yroB in template set T0506 160 :RNASNITPA 1yroB 292 :GVSALSKQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23878 # 1w0pA.160.501 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 160 :RNASNITPA 1w0pA 502 :NLVEFDAFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23879 # 2auwA.160.29 read from T0506.t2k.many.frag # found chain 2auwA in template set T0506 160 :RNASNITPA 2auwA 28 :EVLEVDVGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23880 # 1wmhB.160.57 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)N161 (1wmhB)L68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T166 (1wmhB)N73 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :R 1wmhB 67 :D T0506 162 :ASNI 1wmhB 69 :LPLT T0506 167 :PA 1wmhB 74 :DD Number of specific fragments extracted= 3 number of extra gaps= 2 total=23883 # 1s98A.160.59 read from T0506.t2k.many.frag # found chain 1s98A in template set Warning: unaligning (T0506)A162 (1s98A)V62 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :RN 1s98A 60 :VK T0506 163 :SNITPA 1s98A 63 :VVDGKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23885 # 1wmhA.160.56 read from T0506.t2k.many.frag # found chain 1wmhA in training set T0506 160 :RNASNITPA 1wmhA 67 :DPCTVSSQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23886 # 1cfzA.160.72 read from T0506.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0506)T166 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. T0506 160 :RNASNI 1cfzA 73 :TMMILR T0506 167 :PA 1cfzA 80 :EE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23888 # 1smxA.160.34 read from T0506.t2k.many.frag # found chain 1smxA in training set Warning: unaligning (T0506)N161 (1smxA)H65 because P (beta_P) conformation "forbidden" or filtered. T0506 160 :R 1smxA 64 :R T0506 162 :ASNITPA 1smxA 66 :GFLPLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23890 2etjA expands to /projects/compbio/data/pdb/2etj.pdb.gz 2etjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 207, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2etjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 645, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 647, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 649, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 776, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 778, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 916, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 918, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 969, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 971, because occupancy 0.500 <= existing 0.500 in 2etjA Skipped atom 973, because occupancy 0.500 <= existing 0.500 in 2etjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2etjA.160.79 read from T0506.t2k.many.frag # adding 2etjA to template set # found chain 2etjA in template set Warning: unaligning (T0506)N161 (2etjA)I69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (2etjA)G70 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :R 2etjA 68 :G T0506 163 :SNITPA 2etjA 71 :IASPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23892 # 2evrA.160.75 read from T0506.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0506)A162 (2evrA)G66 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RN 2evrA 64 :YP T0506 163 :SNITPA 2evrA 67 :WLSLSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23894 # 1xniA.160.38 read from T0506.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0506)A168 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1xniA 1523 :YECDVLGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=23895 # 1ws8A.160.45 read from T0506.t2k.many.frag # found chain 1ws8A in training set Warning: unaligning (T0506)N164 (1ws8A)V50 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNAS 1ws8A 46 :NVLQ T0506 165 :ITPA 1ws8A 51 :DQEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23897 # 2ajfE.160.62 read from T0506.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0506)A162 (2ajfE)F387 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (2ajfE)V389 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :RN 2ajfE 385 :DS T0506 163 :S 2ajfE 388 :V T0506 165 :ITPA 2ajfE 390 :KGDD Number of specific fragments extracted= 3 number of extra gaps= 2 total=23900 # 1zvtA.160.154 read from T0506.t2k.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)N164 (1zvtA)F655 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNAS 1zvtA 651 :RMLM T0506 165 :ITPA 1zvtA 656 :PVSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=23902 # 1o4yA.160.206 read from T0506.t2k.many.frag # found chain 1o4yA in training set T0506 160 :RNASNITPA 1o4yA 223 :KVRTVTRAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23903 # 1yarA.160.74 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)N164 (1yarA)S79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 (1yarA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 160 :RNAS 1yarA 75 :AAVT T0506 166 :TPA 1yarA 81 :LVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23905 # 1jy1A.160.213 read from T0506.t2k.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)N161 (1jy1A)P359 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1jy1A)G360 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :R 1jy1A 358 :T T0506 163 :SNITPA 1jy1A 361 :RFQGSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=23907 # 1lb6A.160.126 read from T0506.t2k.many.frag # found chain 1lb6A in training set Warning: unaligning (T0506)A162 (1lb6A)T475 because N (gamma') conformation "forbidden" or filtered. T0506 160 :RN 1lb6A 473 :YV T0506 163 :SNITPA 1lb6A 476 :FMHLEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23909 # 2c5qA.160.180 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)P167 (2c5qA)Q188 because G (3-10) conformation "forbidden" or filtered. T0506 160 :RNASNIT 2c5qA 181 :GIVRIPV T0506 168 :A 2c5qA 189 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=23911 1lvaA expands to /projects/compbio/data/pdb/1lva.pdb.gz 1lvaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1lvaA.160.54 read from T0506.t2k.many.frag # adding 1lvaA to template set # found chain 1lvaA in template set T0506 160 :RNASNITPA 1lvaA 431 :DLYAISTER Number of specific fragments extracted= 1 number of extra gaps= 0 total=23912 1repC expands to /projects/compbio/data/pdb/1rep.pdb.gz 1repC:# 1repC.160.57 read from T0506.t2k.many.frag # adding 1repC to template set # found chain 1repC in template set T0506 160 :RNASNITPA 1repC 58 :GICEIHVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=23913 # 1tt7A.160.103 read from T0506.t2k.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)N161 (1tt7A)Y105 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1tt7A)V108 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :R 1tt7A 104 :E T0506 162 :AS 1tt7A 106 :AS T0506 165 :ITPA 1tt7A 109 :PGDW Number of specific fragments extracted= 3 number of extra gaps= 2 total=23916 # 2a8eA.160.170 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)N161 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :R 2a8eA 171 :C T0506 162 :ASNITPA 2a8eA 173 :IQLQKEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23918 # 2bgcA.160.93 read from T0506.t2k.many.frag # found chain 2bgcA in template set Warning: unaligning (T0506)N164 (2bgcA)I97 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :RNAS 2bgcA 93 :TAYV T0506 165 :ITPA 2bgcA 98 :KINE Number of specific fragments extracted= 2 number of extra gaps= 1 total=23920 # 1yfqA.161.123 read from T0506.t2k.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)A162 (1yfqA)E125 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :N 1yfqA 124 :I T0506 163 :SNITPAD 1yfqA 126 :VIDPRNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23922 # 1xhnA.161.169 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 161 :NASNITPAD 1xhnA 170 :PKIVTPEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23923 # 1regX.161.44 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 161 :NASNITPAD 1regX 45 :YYIVHFKEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23924 # 1lm8C.161.11 read from T0506.t2k.many.frag # found chain 1lm8C in template set Warning: unaligning (T0506)A162 (1lm8C)F29 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :N 1lm8C 28 :E T0506 163 :SNITPAD 1lm8C 30 :IVKREHA Number of specific fragments extracted= 2 number of extra gaps= 1 total=23926 # 2b06A.161.107 read from T0506.t2k.many.frag # found chain 2b06A in template set Warning: unaligning (T0506)N164 (2b06A)V111 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :NAS 2b06A 108 :VSW T0506 165 :ITPAD 2b06A 112 :QKDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23928 # 1yroB.161.176 read from T0506.t2k.many.frag # found chain 1yroB in template set T0506 161 :NASNITPAD 1yroB 293 :VSALSKQQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=23929 # 1w0pA.161.502 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 161 :NASNITPAD 1w0pA 503 :LVEFDAFYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23930 # 2auwA.161.30 read from T0506.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)N161 (2auwA)V29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (2auwA)L30 because E (beta_S) conformation "forbidden" or filtered. T0506 163 :SNITPAD 2auwA 31 :EVDVGDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23931 # 1suuA.161.173 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)N164 (1suuA)F675 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :NAS 1suuA 672 :AFI T0506 165 :ITPAD 1suuA 676 :NSRDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23933 # 1wmhB.161.58 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)A162 (1wmhB)L69 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :N 1wmhB 68 :L T0506 163 :SNITPAD 1wmhB 70 :PLTNDDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=23935 # 2evrA.161.76 read from T0506.t2k.many.frag # found chain 2evrA in template set Warning: unaligning (T0506)A162 (2evrA)G66 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :N 2evrA 65 :P T0506 163 :SNITPAD 2evrA 67 :WLSLSDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23937 # 2etjA.161.80 read from T0506.t2k.many.frag # found chain 2etjA in template set T0506 161 :NASNITPAD 2etjA 69 :IGIASPEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23938 # 1s98A.161.60 read from T0506.t2k.many.frag # found chain 1s98A in template set T0506 161 :NASNITPAD 1s98A 61 :KVVVDGKSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=23939 # 2a8eA.161.171 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)N161 (2a8eA)G172 because Y (epsilon') conformation "forbidden" or filtered. T0506 162 :ASNITPAD 2a8eA 173 :IQLQKEEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23940 # 1repC.161.58 read from T0506.t2k.many.frag # found chain 1repC in template set T0506 161 :NASNITPAD 1repC 59 :ICEIHVAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23941 # 1cfzA.161.73 read from T0506.t2k.many.frag # found chain 1cfzA in template set T0506 161 :NASNITPAD 1cfzA 74 :MMILRDEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=23942 # 1ws8A.161.46 read from T0506.t2k.many.frag # found chain 1ws8A in training set Warning: unaligning (T0506)N164 (1ws8A)V50 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :NAS 1ws8A 47 :VLQ T0506 165 :ITPAD 1ws8A 51 :DQEQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=23944 # 1jy1A.161.214 read from T0506.t2k.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)A162 (1jy1A)G360 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :N 1jy1A 359 :P T0506 163 :SNITPAD 1jy1A 361 :RFQGSQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23946 # 1lvaA.161.55 read from T0506.t2k.many.frag # found chain 1lvaA in template set T0506 161 :NASNITPAD 1lvaA 432 :LYAISTERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=23947 # 1xniA.161.39 read from T0506.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0506)N161 (1xniA)E1524 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1xniA)C1525 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D169 (1xniA)I1532 because E (beta_S) conformation "forbidden" or filtered. T0506 163 :SNITPA 1xniA 1526 :DVLGKD Number of specific fragments extracted= 1 number of extra gaps= 2 total=23948 # 2ajfE.161.63 read from T0506.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0506)A162 (2ajfE)F387 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :N 2ajfE 386 :S T0506 163 :SNITPAD 2ajfE 388 :VVKGDDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23950 # 1lb6A.161.127 read from T0506.t2k.many.frag # found chain 1lb6A in training set T0506 161 :NASNITPAD 1lb6A 474 :VTFMHLEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23951 # 1wmhA.161.57 read from T0506.t2k.many.frag # found chain 1wmhA in training set T0506 161 :NASNITPAD 1wmhA 68 :PCTVSSQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23952 # 1o4yA.161.207 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)N161 (1o4yA)V224 because G (3-10) conformation "forbidden" or filtered. T0506 162 :ASNITPAD 1o4yA 225 :RTVTRAEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=23953 # 1yarA.161.75 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)N161 (1yarA)A76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 (1yarA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 162 :ASN 1yarA 77 :VTS T0506 166 :TPAD 1yarA 81 :LVAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=23955 # 1smxA.161.35 read from T0506.t2k.many.frag # found chain 1smxA in training set T0506 161 :NASNITPAD 1smxA 65 :HGFLPLKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=23956 1o6aA expands to /projects/compbio/data/pdb/1o6a.pdb.gz 1o6aA:Skipped atom 114, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 118, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 120, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 122, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 141, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 145, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 147, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 149, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 151, because occupancy 0.400 <= existing 0.600 in 1o6aA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 548, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 552, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 554, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 556, because occupancy 0.400 <= existing 0.600 in 1o6aA Skipped atom 570, because occupancy 0.500 <= existing 0.500 in 1o6aA Skipped atom 574, because occupancy 0.500 <= existing 0.500 in 1o6aA Skipped atom 576, because occupancy 0.500 <= existing 0.500 in 1o6aA Skipped atom 578, because occupancy 0.500 <= existing 0.500 in 1o6aA Skipped atom 580, because occupancy 0.500 <= existing 0.500 in 1o6aA # 1o6aA.161.28 read from T0506.t2k.many.frag # adding 1o6aA to template set # found chain 1o6aA in template set Warning: unaligning (T0506)A162 (1o6aA)T88 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1o6aA)M90 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :N 1o6aA 87 :R T0506 163 :S 1o6aA 89 :R T0506 165 :ITPAD 1o6aA 91 :TLKRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=23959 # 1t3yA.161.109 read from T0506.t2k.many.frag # found chain 1t3yA in template set T0506 161 :NASNITPAD 1t3yA 111 :EFVISDRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23960 1axiB expands to /projects/compbio/data/pdb/1axi.pdb.gz 1axiB:# 1axiB.161.119 read from T0506.t2k.many.frag # adding 1axiB to template set # found chain 1axiB in template set Warning: unaligning (T0506)N164 (1axiB)F123 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :NAS 1axiB 120 :EKC T0506 165 :ITPAD 1axiB 124 :SVDEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=23962 # 2c5qA.161.181 read from T0506.t2k.many.frag # found chain 2c5qA in template set Warning: unaligning (T0506)P167 (2c5qA)Q188 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A168 (2c5qA)E189 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D169 (2c5qA)T190 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :NASNIT 2c5qA 182 :IVRIPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=23963 # 1xhnA.162.170 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)N164 (1xhnA)V173 because E (beta_S) conformation "forbidden" or filtered. T0506 162 :AS 1xhnA 171 :KI T0506 165 :ITPADL 1xhnA 174 :TPEEYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=23965 # 1regX.162.45 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 162 :ASNITPADL 1regX 46 :YIVHFKEML Number of specific fragments extracted= 1 number of extra gaps= 0 total=23966 # 1yfqA.162.124 read from T0506.t2k.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)A162 (1yfqA)E125 because E (beta_S) conformation "forbidden" or filtered. T0506 163 :SNITPADL 1yfqA 126 :VIDPRNYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=23967 # 1repC.162.59 read from T0506.t2k.many.frag # found chain 1repC in template set T0506 162 :ASNITPADL 1repC 60 :CEIHVAKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23968 # 2a8eA.162.172 read from T0506.t2k.many.frag # found chain 2a8eA in template set T0506 162 :ASNITPADL 2a8eA 173 :IQLQKEEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23969 # 2b06A.162.108 read from T0506.t2k.many.frag # found chain 2b06A in template set T0506 162 :ASNITPADL 2b06A 109 :SWVQKDQIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=23970 # 1lm8C.162.12 read from T0506.t2k.many.frag # found chain 1lm8C in template set Warning: unaligning (T0506)A162 (1lm8C)F29 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1lm8C)V31 because E (beta_S) conformation "forbidden" or filtered. T0506 163 :S 1lm8C 30 :I T0506 165 :ITPADL 1lm8C 32 :KREHAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=23972 # 1yroB.162.177 read from T0506.t2k.many.frag # found chain 1yroB in template set T0506 162 :ASNITPADL 1yroB 294 :SALSKQQFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23973 # 1w0pA.162.503 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 162 :ASNITPADL 1w0pA 504 :VEFDAFYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=23974 # 2auwA.162.31 read from T0506.t2k.many.frag # found chain 2auwA in template set T0506 162 :ASNITPADL 2auwA 30 :LEVDVGDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23975 # 2evrA.162.77 read from T0506.t2k.many.frag # found chain 2evrA in template set T0506 162 :ASNITPADL 2evrA 66 :GWLSLSDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=23976 # 1lb6A.162.128 read from T0506.t2k.many.frag # found chain 1lb6A in training set T0506 162 :ASNITPADL 1lb6A 475 :TFMHLEALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23977 # 2etjA.162.81 read from T0506.t2k.many.frag # found chain 2etjA in template set T0506 162 :ASNITPADL 2etjA 70 :GIASPEEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23978 # 1s98A.162.61 read from T0506.t2k.many.frag # found chain 1s98A in template set T0506 162 :ASNITPADL 1s98A 62 :VVVDGKSMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23979 # 2ajfE.162.64 read from T0506.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0506)A162 (2ajfE)F387 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :SNITPADL 2ajfE 388 :VVKGDDVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=23980 # 1o6aA.162.29 read from T0506.t2k.many.frag # found chain 1o6aA in template set Warning: unaligning (T0506)A162 (1o6aA)T88 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :SNITPADL 1o6aA 89 :RMTLKRVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23981 # 1jy1A.162.215 read from T0506.t2k.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)A162 (1jy1A)G360 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T166 (1jy1A)G364 because S (epsilon) conformation "forbidden" or filtered. T0506 163 :SNI 1jy1A 361 :RFQ T0506 167 :PADL 1jy1A 365 :SQKD Number of specific fragments extracted= 2 number of extra gaps= 2 total=23983 # 1o4yA.162.208 read from T0506.t2k.many.frag # found chain 1o4yA in training set T0506 162 :ASNITPADL 1o4yA 225 :RTVTRAEID Number of specific fragments extracted= 1 number of extra gaps= 0 total=23984 # 1wmhB.162.59 read from T0506.t2k.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)I165 (1wmhB)T72 because G (3-10) conformation "forbidden" or filtered. T0506 162 :ASN 1wmhB 69 :LPL T0506 166 :TPADL 1wmhB 73 :NDDSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=23986 # 1xniA.162.40 read from T0506.t2k.many.frag # found chain 1xniA in template set T0506 162 :ASNITPADL 1xniA 1525 :CDVLGKDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=23987 # 1ws8A.162.47 read from T0506.t2k.many.frag # found chain 1ws8A in training set Warning: unaligning (T0506)S163 (1ws8A)Q49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1ws8A)V50 because Y (epsilon') conformation "forbidden" or filtered. T0506 162 :A 1ws8A 48 :L T0506 165 :ITPADL 1ws8A 51 :DQEQFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=23989 # 1axiB.162.120 read from T0506.t2k.many.frag # found chain 1axiB in template set Warning: unaligning (T0506)N164 (1axiB)F123 because Y (epsilon') conformation "forbidden" or filtered. T0506 162 :AS 1axiB 121 :KC T0506 165 :ITPADL 1axiB 124 :SVDEIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=23991 # 1lvaA.162.56 read from T0506.t2k.many.frag # found chain 1lvaA in template set T0506 162 :ASNITPADL 1lvaA 433 :YAISTERYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=23992 # 1u7nA.162.209 read from T0506.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0506)A162 (1u7nA)G207 because S (epsilon) conformation "forbidden" or filtered. T0506 163 :SNITPADL 1u7nA 208 :NVEARELL Number of specific fragments extracted= 1 number of extra gaps= 1 total=23993 # 1uwwA.162.125 read from T0506.t2k.many.frag # found chain 1uwwA in training set T0506 162 :ASNITPADL 1uwwA 126 :YTINFDELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=23994 # 1cfzA.162.74 read from T0506.t2k.many.frag # found chain 1cfzA in template set Warning: unaligning (T0506)T166 (1cfzA)D79 because S (epsilon) conformation "forbidden" or filtered. T0506 162 :ASNI 1cfzA 75 :MILR T0506 167 :PADL 1cfzA 80 :EEVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=23996 # 1suuA.162.174 read from T0506.t2k.many.frag # found chain 1suuA in training set Warning: unaligning (T0506)A162 (1suuA)F673 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1suuA)F675 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :S 1suuA 674 :I T0506 165 :ITPADL 1suuA 676 :NSRDVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=23998 # 1e1hB.162.5 read from T0506.t2k.many.frag # found chain 1e1hB in training set T0506 162 :ASNITPADL 1e1hB 255 :LEVSFEELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=23999 # 1qv9A.162.180 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 162 :ASNITPADL 1qv9A 181 :LVIDRNTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24000 # 1yarA.162.76 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)N164 (1yarA)S79 because E (beta_S) conformation "forbidden" or filtered. T0506 162 :AS 1yarA 77 :VT T0506 165 :ITPADL 1yarA 80 :GLVADA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24002 # 1repC.163.60 read from T0506.t2k.many.frag # found chain 1repC in template set T0506 163 :SNITPADLR 1repC 61 :EIHVAKYAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24003 # 1regX.163.46 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 163 :SNITPADLR 1regX 47 :IVHFKEMLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24004 # 2a8eA.163.173 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)N164 (2a8eA)L175 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R171 (2a8eA)N182 because G (3-10) conformation "forbidden" or filtered. T0506 163 :S 2a8eA 174 :Q T0506 165 :ITPADL 2a8eA 176 :QKEEVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=24006 # 1xhnA.163.171 read from T0506.t2k.many.frag # found chain 1xhnA in template set T0506 163 :SNITPADLR 1xhnA 172 :IVTPEEYYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24007 # 2ajfE.163.65 read from T0506.t2k.many.frag # found chain 2ajfE in template set T0506 163 :SNITPADLR 2ajfE 388 :VVKGDDVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24008 # 2etjA.163.82 read from T0506.t2k.many.frag # found chain 2etjA in template set T0506 163 :SNITPADLR 2etjA 71 :IASPEEIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24009 # 1yfqA.163.125 read from T0506.t2k.many.frag # found chain 1yfqA in training set T0506 163 :SNITPADLR 1yfqA 126 :VIDPRNYGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24010 # 1lb6A.163.129 read from T0506.t2k.many.frag # found chain 1lb6A in training set T0506 163 :SNITPADLR 1lb6A 476 :FMHLEALRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24011 # 2b06A.163.109 read from T0506.t2k.many.frag # found chain 2b06A in template set T0506 163 :SNITPADLR 2b06A 110 :WVQKDQIPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24012 # 1lm8C.163.13 read from T0506.t2k.many.frag # found chain 1lm8C in template set T0506 163 :SNITPADLR 1lm8C 30 :IVKREHALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24013 # 2auwA.163.32 read from T0506.t2k.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)N164 (2auwA)V32 because E (beta_S) conformation "forbidden" or filtered. T0506 163 :S 2auwA 31 :E T0506 165 :ITPADLR 2auwA 33 :DVGDILR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24015 # 1w0pA.163.504 read from T0506.t2k.many.frag # found chain 1w0pA in training set Warning: unaligning (T0506)R171 (1w0pA)Q513 because G (3-10) conformation "forbidden" or filtered. T0506 163 :SNITPADL 1w0pA 505 :EFDAFYLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24016 # 1o4yA.163.209 read from T0506.t2k.many.frag # found chain 1o4yA in training set T0506 163 :SNITPADLR 1o4yA 226 :TVTRAEIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24017 # 1axiB.163.121 read from T0506.t2k.many.frag # found chain 1axiB in template set Warning: unaligning (T0506)N164 (1axiB)F123 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :S 1axiB 122 :C T0506 165 :ITPADLR 1axiB 124 :SVDEIVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24019 # 2evrA.163.78 read from T0506.t2k.many.frag # found chain 2evrA in template set T0506 163 :SNITPADLR 2evrA 67 :WLSLSDFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24020 # 1qv9A.163.181 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 163 :SNITPADLR 1qv9A 182 :VIDRNTLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24021 # 1vr9A.163.58 read from T0506.t2k.many.frag # found chain 1vr9A in training set T0506 163 :SNITPADLR 1vr9A 47 :VVNKEDLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24022 # 1u7nA.163.210 read from T0506.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0506)S163 (1u7nA)N208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1u7nA)V209 because E (beta_S) conformation "forbidden" or filtered. T0506 165 :ITPADLR 1u7nA 210 :EARELLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24023 # 1o6aA.163.30 read from T0506.t2k.many.frag # found chain 1o6aA in template set Warning: unaligning (T0506)N164 (1o6aA)M90 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :S 1o6aA 89 :R T0506 165 :ITPADLR 1o6aA 91 :TLKRVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24025 # 1jy1A.163.216 read from T0506.t2k.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)T166 (1jy1A)G364 because S (epsilon) conformation "forbidden" or filtered. T0506 163 :SNI 1jy1A 361 :RFQ T0506 167 :PADLR 1jy1A 365 :SQKDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24027 # 1uwwA.163.126 read from T0506.t2k.many.frag # found chain 1uwwA in training set T0506 163 :SNITPADLR 1uwwA 127 :TINFDELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24028 # 1s98A.163.62 read from T0506.t2k.many.frag # found chain 1s98A in template set Warning: unaligning (T0506)A168 (1s98A)S68 because G (3-10) conformation "forbidden" or filtered. T0506 163 :SNITP 1s98A 63 :VVDGK T0506 169 :DLR 1s98A 69 :MQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24030 # 1yroB.163.178 read from T0506.t2k.many.frag # found chain 1yroB in template set T0506 163 :SNITPADLR 1yroB 295 :ALSKQQFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24031 1wb9A expands to /projects/compbio/data/pdb/1wb9.pdb.gz 1wb9A:# 1wb9A.163.475 read from T0506.t2k.many.frag # adding 1wb9A to template set # found chain 1wb9A in template set Warning: unaligning (T0506)A168 (1wb9A)Q481 because G (3-10) conformation "forbidden" or filtered. T0506 163 :SNITP 1wb9A 476 :QISRG T0506 169 :DLR 1wb9A 482 :SHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24033 # 1ws8A.163.48 read from T0506.t2k.many.frag # found chain 1ws8A in training set Warning: unaligning (T0506)S163 (1ws8A)Q49 because P (beta_P) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1ws8A 50 :VDQEQFKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=24034 # 1pqhA.163.108 read from T0506.t2k.many.frag # found chain 1pqhA in training set Warning: unaligning (T0506)N164 (1pqhA)M93 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :S 1pqhA 92 :T T0506 165 :ITPADLR 1pqhA 94 :PDEEART Number of specific fragments extracted= 2 number of extra gaps= 1 total=24036 # 1lqtA.163.223 read from T0506.t2k.many.frag # found chain 1lqtA in training set T0506 163 :SNITPADLR 1lqtA 224 :VIDPAELDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24037 # 1lvaA.163.57 read from T0506.t2k.many.frag # found chain 1lvaA in template set T0506 163 :SNITPADLR 1lvaA 434 :AISTERYQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24038 1ss9A expands to /projects/compbio/data/pdb/1ss9.pdb.gz 1ss9A:# 1ss9A.163.157 read from T0506.t2k.many.frag # adding 1ss9A to template set # found chain 1ss9A in template set T0506 163 :SNITPADLR 1ss9A 158 :LINLKKWRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24039 # 2bjqA.163.275 read from T0506.t2k.many.frag # found chain 2bjqA in training set Warning: unaligning (T0506)N164 (2bjqA)I277 because E (beta_S) conformation "forbidden" or filtered. T0506 163 :S 2bjqA 276 :W T0506 165 :ITPADLR 2bjqA 278 :PYKEAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24041 # 1repC.164.61 read from T0506.t2k.many.frag # found chain 1repC in template set T0506 164 :NITPADLRT 1repC 62 :IHVAKYAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24042 # 1regX.164.47 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 164 :NITPADLRT 1regX 48 :VHFKEMLRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24043 # 1xhnA.164.172 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)R171 (1xhnA)N180 because G (3-10) conformation "forbidden" or filtered. T0506 164 :NITPADL 1xhnA 173 :VTPEEYY T0506 172 :T 1xhnA 181 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=24045 # 2a8eA.164.174 read from T0506.t2k.many.frag # found chain 2a8eA in template set T0506 164 :NITPADLRT 2a8eA 175 :LQKEEVLNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24046 # 2ajfE.164.66 read from T0506.t2k.many.frag # found chain 2ajfE in template set T0506 164 :NITPADLRT 2ajfE 389 :VKGDDVRQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24047 # 1o4yA.164.210 read from T0506.t2k.many.frag # found chain 1o4yA in training set T0506 164 :NITPADLRT 1o4yA 227 :VTRAEIDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24048 # 2etjA.164.83 read from T0506.t2k.many.frag # found chain 2etjA in template set T0506 164 :NITPADLRT 2etjA 72 :ASPEEIDLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24049 # 1axiB.164.122 read from T0506.t2k.many.frag # found chain 1axiB in template set Warning: unaligning (T0506)N164 (1axiB)F123 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1axiB 124 :SVDEIVQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=24050 # 1wb9A.164.476 read from T0506.t2k.many.frag # found chain 1wb9A in template set T0506 164 :NITPADLRT 1wb9A 477 :ISRGQSHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24051 # 1qv9A.164.182 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 164 :NITPADLRT 1qv9A 183 :IDRNTLLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24052 # 1vr9A.164.59 read from T0506.t2k.many.frag # found chain 1vr9A in training set T0506 164 :NITPADLRT 1vr9A 48 :VNKEDLLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24053 # 1lb6A.164.130 read from T0506.t2k.many.frag # found chain 1lb6A in training set T0506 164 :NITPADLRT 1lb6A 477 :MHLEALRQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24054 # 1u7nA.164.211 read from T0506.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0506)T172 (1u7nA)G217 because L (left) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1u7nA 209 :VEARELLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24055 # 2b06A.164.110 read from T0506.t2k.many.frag # found chain 2b06A in template set T0506 164 :NITPADLRT 2b06A 111 :VQKDQIPNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24056 # 1lm8C.164.14 read from T0506.t2k.many.frag # found chain 1lm8C in template set T0506 164 :NITPADLRT 1lm8C 31 :VKREHALTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24057 # 1pqhA.164.109 read from T0506.t2k.many.frag # found chain 1pqhA in training set Warning: unaligning (T0506)N164 (1pqhA)M93 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1pqhA 94 :PDEEARTW Number of specific fragments extracted= 1 number of extra gaps= 1 total=24058 # 1xniA.164.42 read from T0506.t2k.many.frag # found chain 1xniA in template set T0506 164 :NITPADLRT 1xniA 1527 :VLGKDILLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24059 # 1lqtA.164.224 read from T0506.t2k.many.frag # found chain 1lqtA in training set Warning: unaligning (T0506)R171 (1lqtA)G232 because T (delta_L) conformation "forbidden" or filtered. T0506 164 :NITPADL 1lqtA 225 :IDPAELD T0506 172 :T 1lqtA 233 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=24061 1cd9B expands to /projects/compbio/data/pdb/1cd9.pdb.gz 1cd9B:# 1cd9B.164.100 read from T0506.t2k.many.frag # adding 1cd9B to template set # found chain 1cd9B in template set T0506 164 :NITPADLRT 1cd9B 101 :LDPMDVVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24062 # 1w0pA.164.505 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 164 :NITPADLRT 1w0pA 506 :FDAFYLAQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24063 # 1uwwA.164.127 read from T0506.t2k.many.frag # found chain 1uwwA in training set T0506 164 :NITPADLRT 1uwwA 128 :INFDELEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24064 # 1jy1A.164.217 read from T0506.t2k.many.frag # found chain 1jy1A in training set T0506 164 :NITPADLRT 1jy1A 362 :FQGSQKDNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24065 # 1yfqA.164.126 read from T0506.t2k.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)L170 (1yfqA)G133 because S (epsilon) conformation "forbidden" or filtered. T0506 164 :NITPAD 1yfqA 127 :IDPRNY T0506 171 :RT 1yfqA 134 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=24067 # 1ws8A.164.49 read from T0506.t2k.many.frag # found chain 1ws8A in training set Warning: unaligning (T0506)N164 (1ws8A)V50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T172 (1ws8A)C58 because L (left) conformation "forbidden" or filtered. T0506 165 :ITPADLR 1ws8A 51 :DQEQFKS Number of specific fragments extracted= 1 number of extra gaps= 2 total=24068 # 1o6aA.164.31 read from T0506.t2k.many.frag # found chain 1o6aA in template set Warning: unaligning (T0506)N164 (1o6aA)M90 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1o6aA 91 :TLKRVLEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=24069 # 1tqhA.164.55 read from T0506.t2k.many.frag # found chain 1tqhA in training set Warning: unaligning (T0506)N164 (1tqhA)V56 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1tqhA 57 :PPEELVHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=24070 # 1r1mA.164.12 read from T0506.t2k.many.frag # found chain 1r1mA in template set Warning: unaligning (T0506)N164 (1r1mA)L77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R171 (1r1mA)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 165 :ITPADL 1r1mA 78 :SAKTLF T0506 172 :T 1r1mA 85 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=24072 # 2auwA.164.33 read from T0506.t2k.many.frag # found chain 2auwA in template set T0506 164 :NITPADLRT 2auwA 32 :VDVGDILRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24073 # 1t71A.164.266 read from T0506.t2k.many.frag # found chain 1t71A in template set T0506 164 :NITPADLRT 1t71A 267 :EDDPRYLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24074 # 1pv5A.164.243 read from T0506.t2k.many.frag # found chain 1pv5A in training set Warning: unaligning (T0506)T172 (1pv5A)K249 because L (left) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1pv5A 241 :ITPEDLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24075 # 1repC.165.62 read from T0506.t2k.many.frag # found chain 1repC in template set T0506 165 :ITPADLRTD 1repC 63 :HVAKYAEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24076 # 1regX.165.48 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 165 :ITPADLRTD 1regX 49 :HFKEMLRMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24077 # 1axiB.165.123 read from T0506.t2k.many.frag # found chain 1axiB in template set T0506 165 :ITPADLRTD 1axiB 124 :SVDEIVQPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24078 # 2a8eA.165.175 read from T0506.t2k.many.frag # found chain 2a8eA in template set T0506 165 :ITPADLRTD 2a8eA 176 :QKEEVLNMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24079 # 1xhnA.165.173 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 165 :ITPADLRT 1xhnA 174 :TPEEYYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24080 # 1wb9A.165.477 read from T0506.t2k.many.frag # found chain 1wb9A in template set T0506 165 :ITPADLRTD 1wb9A 478 :SRGQSHLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24081 # 1qv9A.165.183 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 165 :ITPADLRTD 1qv9A 184 :DRNTLLERE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24082 # 1vr9A.165.60 read from T0506.t2k.many.frag # found chain 1vr9A in training set T0506 165 :ITPADLRTD 1vr9A 49 :NKEDLLDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24083 # 2ajfE.165.67 read from T0506.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0506)R171 (2ajfE)Q396 because G (3-10) conformation "forbidden" or filtered. T0506 165 :ITPADL 2ajfE 390 :KGDDVR T0506 172 :TD 2ajfE 397 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24085 # 1tqhA.165.56 read from T0506.t2k.many.frag # found chain 1tqhA in training set Warning: unaligning (T0506)D173 (1tqhA)G65 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1tqhA 57 :PPEELVHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=24086 # 1cd9B.165.101 read from T0506.t2k.many.frag # found chain 1cd9B in template set T0506 165 :ITPADLRTD 1cd9B 102 :DPMDVVKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24087 # 1o4yA.165.211 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)A168 (1o4yA)E231 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 (1o4yA)N236 because L (left) conformation "forbidden" or filtered. T0506 165 :ITP 1o4yA 228 :TRA T0506 169 :DLRT 1o4yA 232 :IDPN Number of specific fragments extracted= 2 number of extra gaps= 2 total=24089 # 1u7nA.165.212 read from T0506.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0506)R171 (1u7nA)N216 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T172 (1u7nA)G217 because L (left) conformation "forbidden" or filtered. T0506 165 :ITPADL 1u7nA 210 :EARELL T0506 173 :D 1u7nA 218 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=24091 # 1pqhA.165.110 read from T0506.t2k.many.frag # found chain 1pqhA in training set T0506 165 :ITPADLRTD 1pqhA 94 :PDEEARTWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24092 # 1lb6A.165.131 read from T0506.t2k.many.frag # found chain 1lb6A in training set Warning: unaligning (T0506)T172 (1lb6A)R485 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :ITPADLR 1lb6A 478 :HLEALRQ T0506 173 :D 1lb6A 486 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=24094 # 1t71A.165.267 read from T0506.t2k.many.frag # found chain 1t71A in template set T0506 165 :ITPADLRTD 1t71A 268 :DDPRYLKQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24095 # 2etjA.165.84 read from T0506.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0506)D173 (2etjA)N81 because S (epsilon) conformation "forbidden" or filtered. T0506 165 :ITPADLRT 2etjA 73 :SPEEIDLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=24096 # 1r1mA.165.13 read from T0506.t2k.many.frag # found chain 1r1mA in template set Warning: unaligning (T0506)R171 (1r1mA)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 165 :ITPADL 1r1mA 78 :SAKTLF T0506 172 :TD 1r1mA 85 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24098 # 1o6aA.165.32 read from T0506.t2k.many.frag # found chain 1o6aA in template set Warning: unaligning (T0506)D173 (1o6aA)I99 because E (beta_S) conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1o6aA 91 :TLKRVLEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=24099 # 1lvaA.165.18 read from T0506.t2k.many.frag # found chain 1lvaA in template set T0506 165 :ITPADLRTD 1lvaA 395 :DWQEAATRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24100 # 1uwwA.165.128 read from T0506.t2k.many.frag # found chain 1uwwA in training set Warning: unaligning (T0506)A168 (1uwwA)E132 because G (3-10) conformation "forbidden" or filtered. T0506 165 :ITP 1uwwA 129 :NFD T0506 169 :DLRTD 1uwwA 133 :LEEAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24102 # 1lqtA.165.225 read from T0506.t2k.many.frag # found chain 1lqtA in training set Warning: unaligning (T0506)R171 (1lqtA)G232 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 (1lqtA)T234 because E (beta_S) conformation "forbidden" or filtered. T0506 165 :ITPADL 1lqtA 226 :DPAELD T0506 172 :T 1lqtA 233 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=24104 # 1vhvA.165.217 read from T0506.t2k.many.frag # found chain 1vhvA in training set T0506 165 :ITPADLRTD 1vhvA 205 :RLENLKKID Number of specific fragments extracted= 1 number of extra gaps= 0 total=24105 # 2b06A.165.111 read from T0506.t2k.many.frag # found chain 2b06A in template set T0506 165 :ITPADLRTD 2b06A 112 :QKDQIPNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24106 # 1jy1A.165.218 read from T0506.t2k.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)T166 (1jy1A)G364 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (1jy1A)H372 T0506 165 :I 1jy1A 363 :Q T0506 167 :PADLRT 1jy1A 365 :SQKDNW Number of specific fragments extracted= 2 number of extra gaps= 2 total=24108 # 1xniA.165.43 read from T0506.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0506)A168 (1xniA)D1531 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D169 (1xniA)I1532 because E (beta_S) conformation "forbidden" or filtered. T0506 165 :ITP 1xniA 1528 :LGK T0506 170 :LRTD 1xniA 1533 :LLCD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24110 # 1mpgA.165.156 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 165 :ITPADLRTD 1mpgA 157 :TPQRLAAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24111 # 1w0pA.165.506 read from T0506.t2k.many.frag # found chain 1w0pA in training set T0506 165 :ITPADLRTD 1w0pA 507 :DAFYLAQQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24112 1zghA expands to /projects/compbio/data/pdb/1zgh.pdb.gz 1zghA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zghA.165.194 read from T0506.t2k.many.frag # adding 1zghA to template set # found chain 1zghA in template set T0506 165 :ITPADLRTD 1zghA 165 :RKPEQSEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24113 1mr1C expands to /projects/compbio/data/pdb/1mr1.pdb.gz 1mr1C:# 1mr1C.165.40 read from T0506.t2k.many.frag # adding 1mr1C to template set # found chain 1mr1C in template set Warning: unaligning (T0506)D173 (1mr1C)S263 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1mr1C 255 :PPHKFVVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=24114 # 1repC.166.63 read from T0506.t2k.many.frag # found chain 1repC in template set Warning: unaligning (T0506)L174 (1repC)G72 because L (left) conformation "forbidden" or filtered. T0506 166 :TPADLRTD 1repC 64 :VAKYAEIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=24115 # 1qv9A.166.184 read from T0506.t2k.many.frag # found chain 1qv9A in training set Warning: unaligning (T0506)R171 (1qv9A)E190 because G (3-10) conformation "forbidden" or filtered. T0506 166 :TPADL 1qv9A 185 :RNTLL T0506 172 :TDL 1qv9A 191 :REE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24117 # 1regX.166.49 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)L174 (1regX)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 166 :TPADLRTD 1regX 50 :FKEMLRMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24118 # 1xhnA.166.174 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 166 :TPADLRT 1xhnA 175 :PEEYYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24119 # 1axiB.166.124 read from T0506.t2k.many.frag # found chain 1axiB in template set Warning: unaligning (T0506)R171 (1axiB)Q130 because D (zeta) conformation "forbidden" or filtered. T0506 166 :TPADL 1axiB 125 :VDEIV T0506 172 :TDL 1axiB 131 :PDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24121 # 2a8eA.166.176 read from T0506.t2k.many.frag # found chain 2a8eA in template set T0506 166 :TPADLRTDL 2a8eA 177 :KEEVLNMNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24122 # 1wb9A.166.478 read from T0506.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)N488 T0506 166 :TPADLRTD 1wb9A 479 :RGQSHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=24123 # 1tqhA.166.57 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 166 :TPADLRTDL 1tqhA 58 :PEELVHTGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24124 # 2ajfE.166.68 read from T0506.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0506)D173 (2ajfE)A398 because Y (epsilon') conformation "forbidden" or filtered. T0506 166 :TPADLRT 2ajfE 391 :GDDVRQI T0506 174 :L 2ajfE 399 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=24126 # 1t71A.166.268 read from T0506.t2k.many.frag # found chain 1t71A in template set T0506 166 :TPADLRTDL 1t71A 269 :DPRYLKQDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24127 # 1vr9A.166.61 read from T0506.t2k.many.frag # found chain 1vr9A in training set T0506 166 :TPADLRTDL 1vr9A 50 :KEDLLDLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24128 # 1cd9B.166.102 read from T0506.t2k.many.frag # found chain 1cd9B in template set T0506 166 :TPADLRTDL 1cd9B 103 :PMDVVKLEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24129 # 1vhvA.166.218 read from T0506.t2k.many.frag # found chain 1vhvA in training set T0506 166 :TPADLRTDL 1vhvA 206 :LENLKKIDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24130 # 1pqhA.166.111 read from T0506.t2k.many.frag # found chain 1pqhA in training set Warning: unaligning (T0506)R171 (1pqhA)T100 because G (3-10) conformation "forbidden" or filtered. T0506 166 :TPADL 1pqhA 95 :DEEAR T0506 172 :TDL 1pqhA 101 :WRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24132 # 1lb6A.166.132 read from T0506.t2k.many.frag # found chain 1lb6A in training set T0506 166 :TPADLRTDL 1lb6A 479 :LEALRQRTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24133 # 1r1mA.166.14 read from T0506.t2k.many.frag # found chain 1r1mA in template set Warning: unaligning (T0506)R171 (1r1mA)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 166 :TPADL 1r1mA 79 :AKTLF T0506 172 :TDL 1r1mA 85 :FDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24135 1oj5A expands to /projects/compbio/data/pdb/1oj5.pdb.gz 1oj5A:Skipped atom 40, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 42, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 44, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 1oj5A Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1oj5A Skipped atom 500, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 502, because occupancy 0.400 <= existing 0.600 in 1oj5A Skipped atom 504, because occupancy 0.400 <= existing 0.600 in 1oj5A # 1oj5A.166.23 read from T0506.t2k.many.frag # adding 1oj5A to template set # found chain 1oj5A in template set Warning: unaligning (T0506)R171 (1oj5A)A282 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 (1oj5A)G284 because T (delta_L) conformation "forbidden" or filtered. T0506 166 :TPADL 1oj5A 277 :TSSLR T0506 172 :T 1oj5A 283 :A T0506 174 :L 1oj5A 285 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=24138 # 1u7nA.166.213 read from T0506.t2k.many.frag # found chain 1u7nA in template set Warning: unaligning (T0506)T172 (1u7nA)G217 because L (left) conformation "forbidden" or filtered. T0506 166 :TPADLR 1u7nA 211 :ARELLN T0506 173 :DL 1u7nA 218 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24140 # 1uwwA.166.129 read from T0506.t2k.many.frag # found chain 1uwwA in training set Warning: unaligning (T0506)R171 (1uwwA)E135 because G (3-10) conformation "forbidden" or filtered. T0506 166 :TPADL 1uwwA 130 :FDELE T0506 172 :TDL 1uwwA 136 :ANQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24142 # 1mpgA.166.157 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 166 :TPADLRTDL 1mpgA 158 :PQRLAAADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24143 # 1zghA.166.195 read from T0506.t2k.many.frag # found chain 1zghA in template set T0506 166 :TPADLRTDL 1zghA 166 :KPEQSEISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24144 # 1o6aA.166.33 read from T0506.t2k.many.frag # found chain 1o6aA in template set T0506 166 :TPADLRTDL 1o6aA 92 :LKRVLEMIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24145 # 1o4yA.166.212 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)A168 (1o4yA)E231 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 (1o4yA)N236 because L (left) conformation "forbidden" or filtered. T0506 166 :TP 1o4yA 229 :RA T0506 169 :DLRT 1o4yA 232 :IDPN T0506 174 :L 1o4yA 237 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=24148 1h8eG expands to /projects/compbio/data/pdb/1h8e.pdb.gz 1h8eG:# 1h8eG.166.186 read from T0506.t2k.many.frag # adding 1h8eG to template set # found chain 1h8eG in template set T0506 166 :TPADLRTDL 1h8eG 187 :AESMSIYDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24149 # 2etjA.166.85 read from T0506.t2k.many.frag # found chain 2etjA in template set Warning: unaligning (T0506)D173 (2etjA)N81 because S (epsilon) conformation "forbidden" or filtered. T0506 166 :TPADLRT 2etjA 74 :PEEIDLY T0506 174 :L 2etjA 82 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=24151 # 1lvaA.166.19 read from T0506.t2k.many.frag # found chain 1lvaA in template set T0506 166 :TPADLRTDL 1lvaA 396 :WQEAATRAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24152 # 1mr1C.166.41 read from T0506.t2k.many.frag # found chain 1mr1C in template set T0506 166 :TPADLRTDL 1mr1C 256 :PHKFVVHSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24153 1bf5A expands to /projects/compbio/data/pdb/1bf5.pdb.gz 1bf5A:Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O3P for alphabet: pdb_atoms # 1bf5A.166.389 read from T0506.t2k.many.frag # adding 1bf5A to template set # found chain 1bf5A in template set T0506 166 :TPADLRTDL 1bf5A 539 :WTRFCKENI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24154 # 1odzA.166.226 read from T0506.t2k.many.frag # found chain 1odzA in training set Warning: unaligning (T0506)D173 (1odzA)Y271 because P (beta_P) conformation "forbidden" or filtered. T0506 166 :TPADLRT 1odzA 264 :EANYLER T0506 174 :L 1odzA 272 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=24156 1uddA expands to /projects/compbio/data/pdb/1udd.pdb.gz 1uddA:# 1uddA.166.97 read from T0506.t2k.many.frag # adding 1uddA to template set # found chain 1uddA in template set T0506 166 :TPADLRTDL 1uddA 98 :LEDAIKTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24157 # 1repC.167.64 read from T0506.t2k.many.frag # found chain 1repC in template set T0506 167 :PADLRTDLS 1repC 65 :AKYAEIFGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24158 # 1qv9A.167.185 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 167 :PADLRTDLS 1qv9A 186 :NTLLEREEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24159 # 1regX.167.50 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 167 :PADLRTDLS 1regX 51 :KEMLRMDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24160 # 1oj5A.167.24 read from T0506.t2k.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)D173 (1oj5A)G284 because T (delta_L) conformation "forbidden" or filtered. T0506 167 :PADLRT 1oj5A 278 :SSLRAA T0506 174 :LS 1oj5A 285 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24162 # 1t71A.167.269 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)D173 (1t71A)D276 because D (zeta) conformation "forbidden" or filtered. T0506 167 :PADLRT 1t71A 270 :PRYLKQ T0506 174 :LS 1t71A 277 :YF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24164 1ub0A expands to /projects/compbio/data/pdb/1ub0.pdb.gz 1ub0A:Skipped atom 1460, because occupancy 0.350 <= existing 0.650 in 1ub0A # 1ub0A.167.141 read from T0506.t2k.many.frag # adding 1ub0A to template set # found chain 1ub0A in template set T0506 167 :PADLRTDLS 1ub0A 142 :EALLGRPIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24165 2f6sA expands to /projects/compbio/data/pdb/2f6s.pdb.gz 2f6sA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f6sA.167.93 read from T0506.t2k.many.frag # adding 2f6sA to template set # found chain 2f6sA in template set T0506 167 :PADLRTDLS 2f6sA 72 :PRIESMPQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24166 # 1axiB.167.125 read from T0506.t2k.many.frag # found chain 1axiB in template set Warning: unaligning (T0506)R171 (1axiB)Q130 because D (zeta) conformation "forbidden" or filtered. T0506 167 :PADL 1axiB 126 :DEIV T0506 172 :TDLS 1axiB 131 :PDPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24168 # 1wb9A.167.479 read from T0506.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)N488 Warning: unaligning (T0506)S175 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)N488 T0506 167 :PADLRTD 1wb9A 480 :GQSHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=24169 # 1xhnA.167.175 read from T0506.t2k.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D173 because last residue in template chain is (1xhnA)T182 T0506 167 :PADLRT 1xhnA 176 :EEYYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24170 # 1zaiA.167.79 read from T0506.t2k.many.frag # found chain 1zaiA in template set T0506 167 :PADLRTDLS 1zaiA 80 :HETLYQKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24171 # 2ajfE.167.69 read from T0506.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0506)D173 (2ajfE)A398 because Y (epsilon') conformation "forbidden" or filtered. T0506 167 :PADLRT 2ajfE 392 :DDVRQI T0506 174 :LS 2ajfE 399 :PG Number of specific fragments extracted= 2 number of extra gaps= 1 total=24173 # 1r1mA.167.15 read from T0506.t2k.many.frag # found chain 1r1mA in template set T0506 167 :PADLRTDLS 1r1mA 80 :KTLFGFDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24174 # 1tqhA.167.58 read from T0506.t2k.many.frag # found chain 1tqhA in training set Warning: unaligning (T0506)D173 (1tqhA)G65 because Y (epsilon') conformation "forbidden" or filtered. T0506 167 :PADLRT 1tqhA 59 :EELVHT T0506 174 :LS 1tqhA 66 :PD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24176 # 1vhvA.167.219 read from T0506.t2k.many.frag # found chain 1vhvA in training set T0506 167 :PADLRTDLS 1vhvA 207 :ENLKKIDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24177 # 1cd9B.167.103 read from T0506.t2k.many.frag # found chain 1cd9B in template set T0506 167 :PADLRTDLS 1cd9B 104 :MDVVKLEPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24178 # 1uddA.167.98 read from T0506.t2k.many.frag # found chain 1uddA in template set Warning: unaligning (T0506)D173 (1uddA)E105 because P (beta_P) conformation "forbidden" or filtered. T0506 167 :PADLRT 1uddA 99 :EDAIKT T0506 174 :LS 1uddA 106 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24180 # 1h8eG.167.187 read from T0506.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0506)S175 (1h8eG)I196 because L (left) conformation "forbidden" or filtered. T0506 167 :PADLRTDL 1h8eG 188 :ESMSIYDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24181 # 1tn6A.167.319 read from T0506.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0506)D173 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0506 167 :PADLRT 1tn6A 320 :EDMLEN T0506 174 :LS 1tn6A 327 :CD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24183 1yviA expands to /projects/compbio/data/pdb/1yvi.pdb.gz 1yviA:Skipped atom 651, because occupancy 0.350 <= existing 0.650 in 1yviA Skipped atom 653, because occupancy 0.350 <= existing 0.650 in 1yviA # 1yviA.167.61 read from T0506.t2k.many.frag # adding 1yviA to template set # found chain 1yviA in template set Warning: unaligning (T0506)S175 (1yviA)V70 because P (beta_P) conformation "forbidden" or filtered. T0506 167 :PADLRTDL 1yviA 62 :ATLLEQPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24184 # 1bf5A.167.390 read from T0506.t2k.many.frag # found chain 1bf5A in template set T0506 167 :PADLRTDLS 1bf5A 540 :TRFCKENIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24185 # 1q0rA.167.161 read from T0506.t2k.many.frag # found chain 1q0rA in training set Warning: unaligning (T0506)D173 (1q0rA)P168 because P (beta_P) conformation "forbidden" or filtered. T0506 167 :PADLRT 1q0rA 162 :LALMNQ T0506 174 :LS 1q0rA 169 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24187 # 1lvaA.167.20 read from T0506.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0506)L174 (1lvaA)S404 because L (left) conformation "forbidden" or filtered. T0506 167 :PADLRTD 1lvaA 397 :QEAATRA T0506 175 :S 1lvaA 405 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24189 # 1lb6A.167.133 read from T0506.t2k.many.frag # found chain 1lb6A in training set Warning: unaligning (T0506)T172 (1lb6A)R485 because Y (epsilon') conformation "forbidden" or filtered. T0506 167 :PADLR 1lb6A 480 :EALRQ T0506 173 :DLS 1lb6A 486 :TFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24191 1y14A expands to /projects/compbio/data/pdb/1y14.pdb.gz 1y14A:# 1y14A.167.143 read from T0506.t2k.many.frag # adding 1y14A to template set # found chain 1y14A in template set T0506 167 :PADLRTDLS 1y14A 178 :AQLGSLACD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24192 # 1mpgA.167.158 read from T0506.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0506)R171 (1mpgA)A163 because G (3-10) conformation "forbidden" or filtered. T0506 167 :PADL 1mpgA 159 :QRLA T0506 172 :TDLS 1mpgA 164 :ADPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24194 # 1ku3A.167.33 read from T0506.t2k.many.frag # found chain 1ku3A in training set T0506 167 :PADLRTDLS 1ku3A 399 :EEVGAYFGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24195 1yovA expands to /projects/compbio/data/pdb/1yov.pdb.gz 1yovA:# 1yovA.167.112 read from T0506.t2k.many.frag # adding 1yovA to template set # found chain 1yovA in template set T0506 167 :PADLRTDLS 1yovA 110 :ENLLDNDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24196 2f6hX expands to /projects/compbio/data/pdb/2f6h.pdb.gz 2f6hX:# 2f6hX.167.291 read from T0506.t2k.many.frag # adding 2f6hX to template set # found chain 2f6hX in template set T0506 167 :PADLRTDLS 2f6hX 313 :AKLLQVRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24197 # 2a8eA.167.177 read from T0506.t2k.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)R171 (2a8eA)N182 because G (3-10) conformation "forbidden" or filtered. T0506 167 :PADL 2a8eA 178 :EEVL T0506 172 :TDLS 2a8eA 183 :MNNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24199 # 2f6sA.168.94 read from T0506.t2k.many.frag # found chain 2f6sA in template set Warning: unaligning (T0506)G176 (2f6sA)N81 because E (beta_S) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 2f6sA 73 :RIESMPQN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24200 # 1qv9A.168.186 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 168 :ADLRTDLSG 1qv9A 187 :TLLEREEFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24201 # 1oj5A.168.25 read from T0506.t2k.many.frag # found chain 1oj5A in template set T0506 168 :ADLRTDLSG 1oj5A 279 :SLRAAGRTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24202 # 1repC.168.65 read from T0506.t2k.many.frag # found chain 1repC in template set Warning: unaligning (T0506)G176 (1repC)T74 because P (beta_P) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1repC 66 :KYAEIFGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24203 # 1q0rA.168.162 read from T0506.t2k.many.frag # found chain 1q0rA in training set T0506 168 :ADLRTDLSG 1q0rA 163 :ALMNQPAEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24204 # 1ub0A.168.142 read from T0506.t2k.many.frag # found chain 1ub0A in template set Warning: unaligning (T0506)R171 (1ub0A)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 (1ub0A)P148 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1ub0A)T151 because E (beta_S) conformation "forbidden" or filtered. T0506 168 :ADL 1ub0A 143 :ALL T0506 172 :T 1ub0A 147 :R T0506 174 :LS 1ub0A 149 :IR Number of specific fragments extracted= 3 number of extra gaps= 3 total=24207 # 1zaiA.168.80 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)G176 (1zaiA)D89 because G (3-10) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1zaiA 81 :ETLYQKAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24208 # 1tn6A.168.320 read from T0506.t2k.many.frag # found chain 1tn6A in training set T0506 168 :ADLRTDLSG 1tn6A 321 :DMLENQCDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24209 # 1regX.168.51 read from T0506.t2k.many.frag # found chain 1regX in template set T0506 168 :ADLRTDLSG 1regX 52 :EMLRMDGRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24210 # 1y14A.168.144 read from T0506.t2k.many.frag # found chain 1y14A in template set Warning: unaligning (T0506)D173 (1y14A)A184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1y14A)T187 because E (beta_S) conformation "forbidden" or filtered. T0506 168 :ADLRT 1y14A 179 :QLGSL T0506 174 :LS 1y14A 185 :CD Number of specific fragments extracted= 2 number of extra gaps= 2 total=24212 1na6A expands to /projects/compbio/data/pdb/1na6.pdb.gz 1na6A:# 1na6A.168.238 read from T0506.t2k.many.frag # adding 1na6A to template set # found chain 1na6A in template set T0506 168 :ADLRTDLSG 1na6A 239 :DIIRKGFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24213 # 1t71A.168.270 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)D173 (1t71A)D276 because D (zeta) conformation "forbidden" or filtered. T0506 168 :ADLRT 1t71A 271 :RYLKQ T0506 174 :LSG 1t71A 277 :YFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24215 # 1yviA.168.62 read from T0506.t2k.many.frag # found chain 1yviA in template set T0506 168 :ADLRTDLSG 1yviA 63 :TLLEQPVVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24216 # 1r1mA.168.16 read from T0506.t2k.many.frag # found chain 1r1mA in template set Warning: unaligning (T0506)R171 (1r1mA)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 168 :ADL 1r1mA 81 :TLF T0506 172 :TDLSG 1r1mA 85 :FDKDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24218 # 2f6hX.168.292 read from T0506.t2k.many.frag # found chain 2f6hX in template set T0506 168 :ADLRTDLSG 2f6hX 314 :KLLQVRKYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24219 # 1wb9A.168.480 read from T0506.t2k.many.frag # found chain 1wb9A in template set Warning: unaligning (T0506)A168 (1wb9A)Q481 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE in next template residue (1wb9A)N488 Warning: unaligning (T0506)S175 because of BadResidue code BAD_PEPTIDE at template residue (1wb9A)N488 T0506 169 :DLRTD 1wb9A 482 :SHLAP T0506 176 :G 1wb9A 489 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=24221 # 1h8eG.168.188 read from T0506.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0506)S175 (1h8eG)I196 because L (left) conformation "forbidden" or filtered. T0506 168 :ADLRTDL 1h8eG 189 :SMSIYDD T0506 176 :G 1h8eG 197 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=24223 1a6i expands to /projects/compbio/data/pdb/1a6i.pdb.gz 1a6i:Warning: there is no chain 1a6i will retry with 1a6iA # 1a6i.168.37 read from T0506.t2k.many.frag # adding 1a6i to template set # found chain 1a6i in template set Warning: unaligning (T0506)G176 (1a6i)N47 because Y (epsilon') conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1a6i 39 :PTLYWHVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24224 1zroA expands to /projects/compbio/data/pdb/1zro.pdb.gz 1zroA:Skipped atom 174, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 176, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 178, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 180, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 182, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 208, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 209, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 211, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 212, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 214, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 215, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 217, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 218, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 220, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 221, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 223, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 224, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 226, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 227, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 241, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 243, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 245, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 247, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1954, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1956, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1958, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1960, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 1962, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 2785, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2787, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2789, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2795, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2797, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2799, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2801, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2803, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2809, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2811, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2813, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2815, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2821, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2823, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 2825, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 3413, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3414, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3416, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3417, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3419, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3420, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3422, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3423, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3425, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3426, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3428, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3429, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3431, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3432, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3434, because occupancy 0.200 <= existing 0.500 in 1zroA Skipped atom 3435, because occupancy 0.300 <= existing 0.500 in 1zroA Skipped atom 3455, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3457, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3459, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3461, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3645, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3647, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3649, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3651, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 3653, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4516, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4518, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4520, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4522, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4524, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4551, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4553, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4555, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4557, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4559, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4565, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4567, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4569, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4571, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4573, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4575, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4577, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4579, because occupancy 0.500 <= existing 0.500 in 1zroA Skipped atom 4607, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4609, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4611, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4613, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4619, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4621, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4623, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4625, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4631, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4633, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4635, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4637, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4639, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4641, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4643, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4645, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4651, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4653, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4655, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4657, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4659, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4665, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4667, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4669, because occupancy 0.400 <= existing 0.600 in 1zroA Skipped atom 4671, because occupancy 0.400 <= existing 0.600 in 1zroA # 1zroA.168.47 read from T0506.t2k.many.frag # adding 1zroA to template set # found chain 1zroA in template set T0506 168 :ADLRTDLSG 1zroA 48 :NLAIIKTYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24225 # 1lvaA.168.150 read from T0506.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0506)G176 (1lvaA)S535 because P (beta_P) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1lvaA 527 :RVSRWQPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=24226 # 1w5qA.168.229 read from T0506.t2k.many.frag # found chain 1w5qA in template set T0506 168 :ADLRTDLSG 1w5qA 230 :ATYQMDPAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24227 # 1ku3A.168.34 read from T0506.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0506)L174 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1ku3A)T408 because P (beta_P) conformation "forbidden" or filtered. T0506 168 :ADLRTD 1ku3A 400 :EVGAYF T0506 175 :S 1ku3A 407 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=24229 # 1gkmA.168.59 read from T0506.t2k.many.frag # found chain 1gkmA in training set Warning: unaligning (T0506)S175 (1gkmA)I67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1gkmA)A68 because P (beta_P) conformation "forbidden" or filtered. T0506 168 :ADLRTDL 1gkmA 60 :GLLASTR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24230 1n1bA expands to /projects/compbio/data/pdb/1n1b.pdb.gz 1n1bA:# 1n1bA.168.213 read from T0506.t2k.many.frag # adding 1n1bA to template set # found chain 1n1bA in template set Warning: unaligning (T0506)G176 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1n1bA 263 :DAYARRPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24231 1p4xA expands to /projects/compbio/data/pdb/1p4x.pdb.gz 1p4xA:# 1p4xA.168.178 read from T0506.t2k.many.frag # adding 1p4xA to template set # found chain 1p4xA in template set T0506 168 :ADLRTDLSG 1p4xA 179 :DLIETIHHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24232 # 1bf5A.168.391 read from T0506.t2k.many.frag # found chain 1bf5A in template set T0506 168 :ADLRTDLSG 1bf5A 541 :RFCKENIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=24233 1z7lA expands to /projects/compbio/data/pdb/1z7l.pdb.gz 1z7lA:# 1z7lA.168.255 read from T0506.t2k.many.frag # adding 1z7lA to template set # found chain 1z7lA in template set T0506 168 :ADLRTDLSG 1z7lA 871 :ENYDISPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24234 # 2ajfE.168.70 read from T0506.t2k.many.frag # found chain 2ajfE in template set Warning: unaligning (T0506)D173 (2ajfE)A398 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ajfE)T402 T0506 168 :ADLRT 2ajfE 393 :DVRQI T0506 174 :LS 2ajfE 399 :PG Number of specific fragments extracted= 2 number of extra gaps= 2 total=24236 # 1m22A.168.338 read from T0506.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)G176 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1m22A 376 :NTHRAPLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=24237 # 2bt6A.168.62 read from T0506.t2k.many.frag # found chain 2bt6A in template set Warning: unaligning (T0506)R171 (2bt6A)K66 because G (3-10) conformation "forbidden" or filtered. T0506 168 :ADL 2bt6A 63 :IFE T0506 172 :TDLSG 2bt6A 67 :LEAIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24239 # 2f6sA.169.95 read from T0506.t2k.many.frag # found chain 2f6sA in template set T0506 169 :DLRTDLSGA 2f6sA 74 :IESMPQNNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24240 # 1q0rA.169.163 read from T0506.t2k.many.frag # found chain 1q0rA in training set T0506 169 :DLRTDLSGA 1q0rA 164 :LMNQPAEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24241 # 1oj5A.169.26 read from T0506.t2k.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)D173 (1oj5A)G284 because T (delta_L) conformation "forbidden" or filtered. T0506 169 :DLRT 1oj5A 280 :LRAA T0506 174 :LSGA 1oj5A 285 :RTGW Number of specific fragments extracted= 2 number of extra gaps= 1 total=24243 # 1tn6A.169.321 read from T0506.t2k.many.frag # found chain 1tn6A in training set T0506 169 :DLRTDLSGA 1tn6A 322 :MLENQCDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24244 # 1qv9A.169.187 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 169 :DLRTDLSGA 1qv9A 188 :LLEREEFEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24245 # 1ub0A.169.143 read from T0506.t2k.many.frag # found chain 1ub0A in template set T0506 169 :DLRTDLSGA 1ub0A 144 :LLGRPIRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24246 # 1zaiA.169.81 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)A177 (1zaiA)G90 because T (delta_L) conformation "forbidden" or filtered. T0506 169 :DLRTDLSG 1zaiA 82 :TLYQKADD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24247 # 1na6A.169.239 read from T0506.t2k.many.frag # found chain 1na6A in template set T0506 169 :DLRTDLSGA 1na6A 240 :IIRKGFGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24248 # 1y14A.169.145 read from T0506.t2k.many.frag # found chain 1y14A in template set T0506 169 :DLRTDLSGA 1y14A 180 :LGSLACDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24249 # 1repC.169.66 read from T0506.t2k.many.frag # found chain 1repC in template set Warning: unaligning (T0506)L174 (1repC)G72 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1repC)T74 because P (beta_P) conformation "forbidden" or filtered. T0506 169 :DLRTD 1repC 67 :YAEIF T0506 175 :S 1repC 73 :L T0506 177 :A 1repC 75 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=24252 # 1yviA.169.63 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)S175 (1yviA)V70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1yviA)N71 because N (gamma') conformation "forbidden" or filtered. T0506 169 :DLRTDL 1yviA 64 :LLEQPV T0506 177 :A 1yviA 72 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=24254 1no1A expands to /projects/compbio/data/pdb/1no1.pdb.gz 1no1A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1no1A.169.17 read from T0506.t2k.many.frag # adding 1no1A to template set # found chain 1no1A in template set Warning: unaligning (T0506)R171 (1no1A)R20 because G (3-10) conformation "forbidden" or filtered. T0506 169 :DL 1no1A 18 :PG T0506 172 :TDLSGA 1no1A 21 :FQPDDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24256 # 1a6i.169.38 read from T0506.t2k.many.frag # found chain 1a6i in template set Warning: unaligning (T0506)G176 (1a6i)N47 because Y (epsilon') conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1a6i 40 :TLYWHVK T0506 177 :A 1a6i 48 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=24258 # 1zroA.169.48 read from T0506.t2k.many.frag # found chain 1zroA in template set Warning: unaligning (T0506)G176 (1zroA)T56 because E (beta_S) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1zroA 49 :LAIIKTY T0506 177 :A 1zroA 57 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=24260 # 1w5qA.169.230 read from T0506.t2k.many.frag # found chain 1w5qA in template set Warning: unaligning (T0506)R171 (1w5qA)Q233 because P (beta_P) conformation "forbidden" or filtered. T0506 169 :DL 1w5qA 231 :TY T0506 172 :TDLSGA 1w5qA 234 :MDPANS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24262 # 1h8eG.169.189 read from T0506.t2k.many.frag # found chain 1h8eG in template set T0506 169 :DLRTDLSGA 1h8eG 190 :MSIYDDIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24263 # 1fp2A.169.59 read from T0506.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0506)R171 (1fp2A)Q62 because L (left) conformation "forbidden" or filtered. T0506 169 :DL 1fp2A 60 :IL T0506 172 :TDLSGA 1fp2A 63 :VPSSKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24265 # 1t71A.169.271 read from T0506.t2k.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A177 because of BadResidue code HAS_OXT+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t71A)I281 T0506 169 :DLRTDLSG 1t71A 272 :YLKQDYFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24266 1vjxA expands to /projects/compbio/data/pdb/1vjx.pdb.gz 1vjxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 1vjxA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 1vjxA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vjxA.169.92 read from T0506.t2k.many.frag # adding 1vjxA to template set # found chain 1vjxA in template set T0506 169 :DLRTDLSGA 1vjxA 81 :ILRRKDLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24267 # 1zy7A.169.348 read from T0506.t2k.many.frag # found chain 1zy7A in template set Warning: unaligning (T0506)G176 (1zy7A)K654 because D (zeta) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1zy7A 647 :LLRSKIT T0506 177 :A 1zy7A 655 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=24269 # 1m22A.169.339 read from T0506.t2k.many.frag # found chain 1m22A in training set T0506 169 :DLRTDLSGA 1m22A 377 :THRAPLRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24270 # 1regX.169.52 read from T0506.t2k.many.frag # found chain 1regX in template set Warning: unaligning (T0506)L174 (1regX)G58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1regX)Q60 because N (gamma') conformation "forbidden" or filtered. T0506 169 :DLRTD 1regX 53 :MLRMD T0506 175 :S 1regX 59 :R T0506 177 :A 1regX 61 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=24273 # 1ku3A.169.35 read from T0506.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0506)L174 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0506 169 :DLRTD 1ku3A 401 :VGAYF T0506 175 :SGA 1ku3A 407 :VTR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24275 # 2yhx.169.322 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2yhx)H329 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)H329 Warning: unaligning (T0506)S175 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)F330 T0506 169 :DLRT 2yhx 324 :IQKL T0506 176 :GA 2yhx 331 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24277 # 1gkmA.169.60 read from T0506.t2k.many.frag # found chain 1gkmA in training set Warning: unaligning (T0506)A177 because of BadResidue code BAD_PEPTIDE in next template residue (1gkmA)H70 T0506 169 :DLRTDLSG 1gkmA 61 :LLASTRIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24278 # 1l5oA.169.201 read from T0506.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0506)R171 (1l5oA)N204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 (1l5oA)P206 because P (beta_P) conformation "forbidden" or filtered. T0506 169 :DL 1l5oA 202 :GA T0506 172 :T 1l5oA 205 :L T0506 174 :LSGA 1l5oA 207 :PSRI Number of specific fragments extracted= 3 number of extra gaps= 2 total=24281 # 1fr2A.169.21 read from T0506.t2k.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)T172 (1fr2A)A25 because L (left) conformation "forbidden" or filtered. T0506 169 :DLR 1fr2A 22 :ICN T0506 173 :DLSGA 1fr2A 26 :DTSSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24283 # 1u60A.169.123 read from T0506.t2k.many.frag # found chain 1u60A in training set Warning: unaligning (T0506)L174 (1u60A)A129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1u60A)N131 because Y (epsilon') conformation "forbidden" or filtered. T0506 169 :DLRTD 1u60A 124 :TSLIN T0506 175 :S 1u60A 130 :E T0506 177 :A 1u60A 132 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=24286 # 1lvaA.169.151 read from T0506.t2k.many.frag # found chain 1lvaA in template set Warning: unaligning (T0506)R171 (1lvaA)R530 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1lvaA)S535 because P (beta_P) conformation "forbidden" or filtered. T0506 169 :DL 1lvaA 528 :VS T0506 172 :TDLS 1lvaA 531 :WQPP T0506 177 :A 1lvaA 536 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=24289 1e6iA expands to /projects/compbio/data/pdb/1e6i.pdb.gz 1e6iA:# 1e6iA.169.62 read from T0506.t2k.many.frag # adding 1e6iA to template set # found chain 1e6iA in template set Warning: unaligning (T0506)T172 (1e6iA)N384 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1e6iA)K388 because E (beta_S) conformation "forbidden" or filtered. T0506 169 :DLR 1e6iA 381 :LES T0506 173 :DLS 1e6iA 385 :KYQ T0506 177 :A 1e6iA 389 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=24292 # 2f6sA.170.96 read from T0506.t2k.many.frag # found chain 2f6sA in template set T0506 170 :LRTDLSGAE 2f6sA 75 :ESMPQNNFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24293 # 1q0rA.170.164 read from T0506.t2k.many.frag # found chain 1q0rA in training set T0506 170 :LRTDLSGAE 1q0rA 165 :MNQPAEGRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24294 # 1na6A.170.240 read from T0506.t2k.many.frag # found chain 1na6A in template set Warning: unaligning (T0506)D173 (1na6A)G244 because S (epsilon) conformation "forbidden" or filtered. T0506 170 :LRT 1na6A 241 :IRK T0506 174 :LSGAE 1na6A 245 :FGSVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24296 # 1tn6A.170.322 read from T0506.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0506)D173 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0506 170 :LRT 1tn6A 323 :LEN T0506 174 :LSGAE 1tn6A 327 :CDNKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24298 # 1no1A.170.18 read from T0506.t2k.many.frag # found chain 1no1A in template set Warning: unaligning (T0506)L170 (1no1A)G19 because L (left) conformation "forbidden" or filtered. T0506 171 :RTDLSGAE 1no1A 20 :RFQPDDLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24299 # 1zaiA.170.82 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)A177 (1zaiA)G90 because T (delta_L) conformation "forbidden" or filtered. T0506 170 :LRTDLSG 1zaiA 83 :LYQKADD T0506 178 :E 1zaiA 91 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=24301 # 1oj5A.170.27 read from T0506.t2k.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)D173 (1oj5A)G284 because T (delta_L) conformation "forbidden" or filtered. T0506 170 :LRT 1oj5A 281 :RAA T0506 174 :LSGAE 1oj5A 285 :RTGWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24303 # 1ub0A.170.144 read from T0506.t2k.many.frag # found chain 1ub0A in template set Warning: unaligning (T0506)G176 (1ub0A)T151 because E (beta_S) conformation "forbidden" or filtered. T0506 170 :LRTDLS 1ub0A 145 :LGRPIR T0506 177 :AE 1ub0A 152 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24305 # 1yviA.170.64 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)G176 (1yviA)N71 because N (gamma') conformation "forbidden" or filtered. T0506 170 :LRTDLS 1yviA 65 :LEQPVV T0506 177 :AE 1yviA 72 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24307 # 1qv9A.170.188 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 170 :LRTDLSGAE 1qv9A 189 :LEREEFENP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24308 # 1y14A.170.146 read from T0506.t2k.many.frag # found chain 1y14A in template set Warning: unaligning (T0506)D173 (1y14A)A184 because P (beta_P) conformation "forbidden" or filtered. T0506 170 :LRT 1y14A 181 :GSL T0506 174 :LSGAE 1y14A 185 :CDTAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24310 # 1w5qA.170.231 read from T0506.t2k.many.frag # found chain 1w5qA in template set T0506 170 :LRTDLSGAE 1w5qA 232 :YQMDPANSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24311 # 1zroA.170.49 read from T0506.t2k.many.frag # found chain 1zroA in template set T0506 170 :LRTDLSGAE 1zroA 50 :AIIKTYTKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24312 # 1l5oA.170.202 read from T0506.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0506)R171 (1l5oA)N204 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1l5oA)R209 because G (3-10) conformation "forbidden" or filtered. T0506 170 :L 1l5oA 203 :A T0506 172 :TDLS 1l5oA 205 :LPPS T0506 177 :AE 1l5oA 210 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=24315 # 1zy7A.170.349 read from T0506.t2k.many.frag # found chain 1zy7A in template set T0506 170 :LRTDLSGAE 1zy7A 648 :LRSKITKPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24316 # 1h8eG.170.190 read from T0506.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0506)S175 (1h8eG)I196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1h8eG)D197 because E (beta_S) conformation "forbidden" or filtered. T0506 170 :LRTDL 1h8eG 191 :SIYDD T0506 177 :AE 1h8eG 198 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24318 # 1fp2A.170.60 read from T0506.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0506)R171 (1fp2A)Q62 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D173 (1fp2A)P64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1fp2A)K67 because G (3-10) conformation "forbidden" or filtered. T0506 170 :L 1fp2A 61 :L T0506 172 :T 1fp2A 63 :V T0506 174 :LS 1fp2A 65 :SS T0506 177 :AE 1fp2A 68 :IG Number of specific fragments extracted= 4 number of extra gaps= 3 total=24322 # 1a6i.170.39 read from T0506.t2k.many.frag # found chain 1a6i in template set Warning: unaligning (T0506)G176 (1a6i)N47 because Y (epsilon') conformation "forbidden" or filtered. T0506 170 :LRTDLS 1a6i 41 :LYWHVK T0506 177 :AE 1a6i 48 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24324 # 1m22A.170.340 read from T0506.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)G176 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0506 170 :LRTDLS 1m22A 378 :HRAPLR T0506 177 :AE 1m22A 385 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24326 # 1fr2A.170.22 read from T0506.t2k.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)R171 (1fr2A)N24 because G (3-10) conformation "forbidden" or filtered. T0506 170 :L 1fr2A 23 :C T0506 172 :TDLSGAE 1fr2A 25 :ADTSSEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24328 # 2yhx.170.323 read from T0506.t2k.many.frag # found chain 2yhx in template set Warning: unaligning (T0506)D173 because of BadResidue code BAD_PEPTIDE in next template residue (2yhx)H329 Warning: unaligning (T0506)L174 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)H329 Warning: unaligning (T0506)S175 because of BadResidue code BAD_PEPTIDE at template residue (2yhx)F330 Warning: unaligning (T0506)G176 (2yhx)D331 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (2yhx)L332 because L (left) conformation "forbidden" or filtered. T0506 170 :LRT 2yhx 325 :QKL T0506 178 :E 2yhx 333 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=24330 # 1u60A.170.124 read from T0506.t2k.many.frag # found chain 1u60A in training set Warning: unaligning (T0506)L174 (1u60A)A129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1u60A)N131 because Y (epsilon') conformation "forbidden" or filtered. T0506 170 :LRTD 1u60A 125 :SLIN T0506 175 :S 1u60A 130 :E T0506 177 :AE 1u60A 132 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=24333 # 1e6iA.170.63 read from T0506.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0506)T172 (1e6iA)N384 because L (left) conformation "forbidden" or filtered. T0506 170 :LR 1e6iA 382 :ES T0506 173 :DLSGAE 1e6iA 385 :KYQKME Number of specific fragments extracted= 2 number of extra gaps= 1 total=24335 # 1j27A.170.11 read from T0506.t2k.many.frag # found chain 1j27A in training set Warning: unaligning (T0506)G176 (1j27A)S18 because Y (epsilon') conformation "forbidden" or filtered. T0506 170 :LRTDLS 1j27A 12 :LETPAR T0506 177 :AE 1j27A 19 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24337 # 1a3aA.170.13 read from T0506.t2k.many.frag # found chain 1a3aA in training set T0506 170 :LRTDLSGAE 1a3aA 14 :LGRKAATKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24338 # 1vjxA.170.93 read from T0506.t2k.many.frag # found chain 1vjxA in template set Warning: unaligning (T0506)G176 (1vjxA)T88 because P (beta_P) conformation "forbidden" or filtered. T0506 170 :LRTDLS 1vjxA 82 :LRRKDL T0506 177 :AE 1vjxA 89 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24340 1w5tA expands to /projects/compbio/data/pdb/1w5t.pdb.gz 1w5tA:# 1w5tA.170.344 read from T0506.t2k.many.frag # adding 1w5tA to template set # found chain 1w5tA in template set Warning: unaligning (T0506)R171 (1w5tA)N346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1w5tA)G351 because P (beta_P) conformation "forbidden" or filtered. T0506 170 :L 1w5tA 345 :Y T0506 172 :TDLS 1w5tA 347 :VKPR T0506 177 :AE 1w5tA 352 :YT Number of specific fragments extracted= 3 number of extra gaps= 2 total=24343 # 1ku3A.170.36 read from T0506.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0506)L174 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0506 170 :LRTD 1ku3A 402 :GAYF T0506 175 :SGAE 1ku3A 407 :VTRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24345 # 1ix9A.170.101 read from T0506.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)S175 (1ix9A)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1ix9A)S108 because Y (epsilon') conformation "forbidden" or filtered. T0506 170 :LRTDL 1ix9A 102 :IERDF T0506 177 :AE 1ix9A 109 :VD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24347 # 1repC.170.67 read from T0506.t2k.many.frag # found chain 1repC in template set T0506 170 :LRTDLSGAE 1repC 68 :AEIFGLTSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24348 # 2f6sA.171.97 read from T0506.t2k.many.frag # found chain 2f6sA in template set T0506 171 :RTDLSGAEE 2f6sA 76 :SMPQNNFNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24349 # 1na6A.171.241 read from T0506.t2k.many.frag # found chain 1na6A in template set T0506 171 :RTDLSGAEE 1na6A 242 :RKGFGSVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24350 # 1q0rA.171.165 read from T0506.t2k.many.frag # found chain 1q0rA in training set T0506 171 :RTDLSGAEE 1q0rA 166 :NQPAEGRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24351 # 1no1A.171.19 read from T0506.t2k.many.frag # found chain 1no1A in template set T0506 171 :RTDLSGAEE 1no1A 20 :RFQPDDLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24352 # 1tn6A.171.323 read from T0506.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0506)D173 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S175 (1tn6A)D328 because P (beta_P) conformation "forbidden" or filtered. T0506 171 :RT 1tn6A 324 :EN T0506 174 :L 1tn6A 327 :C T0506 176 :GAEE 1tn6A 329 :NKED Number of specific fragments extracted= 3 number of extra gaps= 2 total=24355 # 1yviA.171.65 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)G176 (1yviA)N71 because N (gamma') conformation "forbidden" or filtered. T0506 171 :RTDLS 1yviA 66 :EQPVV T0506 177 :AEE 1yviA 72 :FDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24357 # 1oj5A.171.28 read from T0506.t2k.many.frag # found chain 1oj5A in template set T0506 171 :RTDLSGAEE 1oj5A 282 :AAGRTGWED Number of specific fragments extracted= 1 number of extra gaps= 0 total=24358 # 1ub0A.171.145 read from T0506.t2k.many.frag # found chain 1ub0A in template set Warning: unaligning (T0506)D173 (1ub0A)P148 because P (beta_P) conformation "forbidden" or filtered. T0506 171 :RT 1ub0A 146 :GR T0506 174 :LSGAEE 1ub0A 149 :IRTLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24360 # 1zroA.171.50 read from T0506.t2k.many.frag # found chain 1zroA in template set Warning: unaligning (T0506)G176 (1zroA)T56 because E (beta_S) conformation "forbidden" or filtered. T0506 171 :RTDLS 1zroA 51 :IIKTY T0506 177 :AEE 1zroA 57 :KET Number of specific fragments extracted= 2 number of extra gaps= 1 total=24362 # 1y14A.171.147 read from T0506.t2k.many.frag # found chain 1y14A in template set T0506 171 :RTDLSGAEE 1y14A 182 :SLACDTADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24363 # 1l5oA.171.203 read from T0506.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0506)R171 (1l5oA)N204 because L (left) conformation "forbidden" or filtered. T0506 172 :TDLSGAEE 1l5oA 205 :LPPSRIDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24364 # 1h8eG.171.191 read from T0506.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0506)S175 (1h8eG)I196 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1h8eG)D197 because E (beta_S) conformation "forbidden" or filtered. T0506 171 :RTDL 1h8eG 192 :IYDD T0506 177 :AEE 1h8eG 198 :ADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24366 # 1w2wA.171.81 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 171 :RTDLSGAEE 1w2wA 82 :LYSLVNWES Number of specific fragments extracted= 1 number of extra gaps= 0 total=24367 # 1e6iA.171.64 read from T0506.t2k.many.frag # found chain 1e6iA in template set T0506 171 :RTDLSGAEE 1e6iA 383 :SNKYQKMED Number of specific fragments extracted= 1 number of extra gaps= 0 total=24368 # 1j27A.171.12 read from T0506.t2k.many.frag # found chain 1j27A in training set Warning: unaligning (T0506)G176 (1j27A)S18 because Y (epsilon') conformation "forbidden" or filtered. T0506 171 :RTDLS 1j27A 13 :ETPAR T0506 177 :AEE 1j27A 19 :LKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24370 # 1qv9A.171.189 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 171 :RTDLSGAEE 1qv9A 190 :EREEFENPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24371 # 1zaiA.171.83 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)D173 (1zaiA)K86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1zaiA)D89 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1zaiA)G90 because T (delta_L) conformation "forbidden" or filtered. T0506 171 :RT 1zaiA 84 :YQ T0506 174 :LS 1zaiA 87 :AD T0506 178 :EE 1zaiA 91 :RP Number of specific fragments extracted= 3 number of extra gaps= 2 total=24374 # 1m22A.171.341 read from T0506.t2k.many.frag # found chain 1m22A in training set T0506 171 :RTDLSGAEE 1m22A 379 :RAPLRSLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24375 # 1a3aA.171.14 read from T0506.t2k.many.frag # found chain 1a3aA in training set Warning: unaligning (T0506)R171 (1a3aA)G15 because L (left) conformation "forbidden" or filtered. T0506 172 :TDLSGAEE 1a3aA 16 :RKAATKEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=24376 1yg2A expands to /projects/compbio/data/pdb/1yg2.pdb.gz 1yg2A:# 1yg2A.171.101 read from T0506.t2k.many.frag # adding 1yg2A to template set # found chain 1yg2A in template set Warning: unaligning (T0506)G176 (1yg2A)S107 because P (beta_P) conformation "forbidden" or filtered. T0506 171 :RTDLS 1yg2A 102 :ACSVQ T0506 177 :AEE 1yg2A 108 :AEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=24378 # 1aep.171.87 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 171 :RTDLSGAEE 1aep 88 :AATSLNLQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24379 # 1ix9A.171.102 read from T0506.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)S175 (1ix9A)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1ix9A)S108 because Y (epsilon') conformation "forbidden" or filtered. T0506 171 :RTDL 1ix9A 103 :ERDF T0506 177 :AEE 1ix9A 109 :VDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24381 1xl3C expands to /projects/compbio/data/pdb/1xl3.pdb.gz 1xl3C:# 1xl3C.171.31 read from T0506.t2k.many.frag # adding 1xl3C to template set # found chain 1xl3C in template set Warning: unaligning (T0506)D173 (1xl3C)S34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1xl3C)T37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xl3C)V42 T0506 171 :RT 1xl3C 32 :AF T0506 174 :LS 1xl3C 35 :LP T0506 177 :AE 1xl3C 38 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=24384 # 1fr2A.171.23 read from T0506.t2k.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)T172 (1fr2A)A25 because L (left) conformation "forbidden" or filtered. T0506 171 :R 1fr2A 24 :N T0506 173 :DLSGAEE 1fr2A 26 :DTSSEEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24386 # 1ijyA.171.30 read from T0506.t2k.many.frag # found chain 1ijyA in training set Warning: unaligning (T0506)D173 (1ijyA)N31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1ijyA)T34 because E (beta_S) conformation "forbidden" or filtered. T0506 171 :RT 1ijyA 29 :QF T0506 174 :LS 1ijyA 32 :HD T0506 177 :AEE 1ijyA 35 :QDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=24389 # 1fp2A.171.61 read from T0506.t2k.many.frag # found chain 1fp2A in training set Warning: unaligning (T0506)R171 (1fp2A)Q62 because L (left) conformation "forbidden" or filtered. T0506 172 :TDLSGAEE 1fp2A 63 :VPSSKIGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24390 # 1w5qA.171.232 read from T0506.t2k.many.frag # found chain 1w5qA in template set T0506 171 :RTDLSGAEE 1w5qA 233 :QMDPANSDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24391 # 1ku3A.171.37 read from T0506.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0506)G176 (1ku3A)T408 because P (beta_P) conformation "forbidden" or filtered. T0506 171 :RTDLS 1ku3A 403 :AYFGV T0506 177 :AEE 1ku3A 409 :RER Number of specific fragments extracted= 2 number of extra gaps= 1 total=24393 1h54A expands to /projects/compbio/data/pdb/1h54.pdb.gz 1h54A:# 1h54A.171.264 read from T0506.t2k.many.frag # adding 1h54A to template set # found chain 1h54A in template set T0506 171 :RTDLSGAEE 1h54A 265 :SRDYDTQES Number of specific fragments extracted= 1 number of extra gaps= 0 total=24394 1ezfA expands to /projects/compbio/data/pdb/1ezf.pdb.gz 1ezfA:# 1ezfA.171.294 read from T0506.t2k.many.frag # adding 1ezfA to template set # found chain 1ezfA in template set Warning: unaligning (T0506)D173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ezfA)D327 T0506 174 :LSGAEE 1ezfA 328 :ATNMPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24395 # 1na6A.172.242 read from T0506.t2k.many.frag # found chain 1na6A in template set Warning: unaligning (T0506)D173 (1na6A)G244 because S (epsilon) conformation "forbidden" or filtered. T0506 172 :T 1na6A 243 :K T0506 174 :LSGAEEL 1na6A 245 :FGSVDEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24397 # 1tn6A.172.324 read from T0506.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0506)D173 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S175 (1tn6A)D328 because P (beta_P) conformation "forbidden" or filtered. T0506 172 :T 1tn6A 325 :N T0506 174 :L 1tn6A 327 :C T0506 176 :GAEEL 1tn6A 329 :NKEDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=24400 # 1q0rA.172.166 read from T0506.t2k.many.frag # found chain 1q0rA in training set T0506 172 :TDLSGAEEL 1q0rA 167 :QPAEGRAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24401 # 2f6sA.172.98 read from T0506.t2k.many.frag # found chain 2f6sA in template set T0506 172 :TDLSGAEEL 2f6sA 77 :MPQNNFNQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24402 # 1no1A.172.20 read from T0506.t2k.many.frag # found chain 1no1A in template set Warning: unaligning (T0506)G176 (1no1A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 172 :TDLS 1no1A 21 :FQPD T0506 177 :AEEL 1no1A 26 :LKGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24404 # 1e6iA.172.65 read from T0506.t2k.many.frag # found chain 1e6iA in template set Warning: unaligning (T0506)T172 (1e6iA)N384 because L (left) conformation "forbidden" or filtered. T0506 173 :DLSGAEEL 1e6iA 385 :KYQKMEDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=24405 # 1zroA.172.51 read from T0506.t2k.many.frag # found chain 1zroA in template set T0506 172 :TDLSGAEEL 1zroA 52 :IKTYTKETM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24406 # 1yviA.172.66 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)S175 (1yviA)V70 because P (beta_P) conformation "forbidden" or filtered. T0506 172 :TDL 1yviA 67 :QPV T0506 176 :GAEEL 1yviA 71 :NFDKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24408 # 1ix9A.172.103 read from T0506.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)S175 (1ix9A)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1ix9A)S108 because Y (epsilon') conformation "forbidden" or filtered. T0506 172 :TDL 1ix9A 104 :RDF T0506 177 :AEEL 1ix9A 109 :VDNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24410 # 1w2wA.172.82 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 172 :TDLSGAEEL 1w2wA 83 :YSLVNWEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=24411 # 1j27A.172.13 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 172 :TDLSGAEEL 1j27A 14 :TPARSLKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24412 # 1ub0A.172.146 read from T0506.t2k.many.frag # found chain 1ub0A in template set T0506 172 :TDLSGAEEL 1ub0A 147 :RPIRTLKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24413 # 1oj5A.172.29 read from T0506.t2k.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)D173 (1oj5A)G284 because T (delta_L) conformation "forbidden" or filtered. T0506 172 :T 1oj5A 283 :A T0506 174 :LSGAEEL 1oj5A 285 :RTGWEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24415 # 1h8eG.172.192 read from T0506.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0506)S175 (1h8eG)I196 because L (left) conformation "forbidden" or filtered. T0506 172 :TDL 1h8eG 193 :YDD T0506 176 :GAEEL 1h8eG 197 :DADVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24417 # 1l5oA.172.204 read from T0506.t2k.many.frag # found chain 1l5oA in training set T0506 172 :TDLSGAEEL 1l5oA 205 :LPPSRIDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24418 # 1y14A.172.148 read from T0506.t2k.many.frag # found chain 1y14A in template set Warning: unaligning (T0506)G176 (1y14A)T187 because E (beta_S) conformation "forbidden" or filtered. T0506 172 :TDLS 1y14A 183 :LACD T0506 177 :AEEL 1y14A 188 :ADEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24420 # 1aep.172.88 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 172 :TDLSGAEEL 1aep 89 :ATSLNLQDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24421 # 1h54A.172.265 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 172 :TDLSGAEEL 1h54A 266 :RDYDTQESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24422 # 1xl3C.172.32 read from T0506.t2k.many.frag # found chain 1xl3C in template set Warning: unaligning (T0506)E179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xl3C)V42 T0506 172 :TDLSGAE 1xl3C 33 :FSLPTPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24423 # 1m22A.172.342 read from T0506.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)G176 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0506 172 :TDLS 1m22A 380 :APLR T0506 177 :AEEL 1m22A 385 :LADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24425 1hf2A expands to /projects/compbio/data/pdb/1hf2.pdb.gz 1hf2A:# 1hf2A.172.15 read from T0506.t2k.many.frag # adding 1hf2A to template set # found chain 1hf2A in template set Warning: unaligning (T0506)L174 (1hf2A)Y18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1hf2A)N20 because E (beta_S) conformation "forbidden" or filtered. T0506 172 :TD 1hf2A 16 :KD T0506 175 :S 1hf2A 19 :Q T0506 177 :AEEL 1hf2A 21 :LEEV Number of specific fragments extracted= 3 number of extra gaps= 2 total=24428 # 1ezfA.172.295 read from T0506.t2k.many.frag # found chain 1ezfA in template set Warning: unaligning (T0506)D173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ezfA)D327 T0506 174 :LSGAEEL 1ezfA 328 :ATNMPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24429 1zybA expands to /projects/compbio/data/pdb/1zyb.pdb.gz 1zybA:Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 13, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 427, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 429, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 431, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 433, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 435, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 528, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 938, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 940, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 942, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 972, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 974, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1144, because occupancy 0.500 <= existing 0.500 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1240, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1242, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1244, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1246, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1282, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1284, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 1zybA Skipped atom 1382, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1384, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1503, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1505, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1507, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1509, because occupancy 0.300 <= existing 0.700 in 1zybA Skipped atom 1511, because occupancy 0.300 <= existing 0.700 in 1zybA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zybA.172.128 read from T0506.t2k.many.frag # adding 1zybA to template set # found chain 1zybA in template set Warning: unaligning (T0506)A177 (1zybA)Y122 because E (beta_S) conformation "forbidden" or filtered. T0506 172 :TDLSG 1zybA 117 :SDLFR T0506 178 :EEL 1zybA 123 :DIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24431 # 1a3aA.172.15 read from T0506.t2k.many.frag # found chain 1a3aA in training set T0506 172 :TDLSGAEEL 1a3aA 16 :RKAATKEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24432 # 1ku3A.172.38 read from T0506.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0506)L174 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0506 172 :TD 1ku3A 404 :YF T0506 175 :SGAEEL 1ku3A 407 :VTRERI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24434 1txjA expands to /projects/compbio/data/pdb/1txj.pdb.gz 1txjA:# 1txjA.172.104 read from T0506.t2k.many.frag # adding 1txjA to template set # found chain 1txjA in template set Warning: unaligning (T0506)D173 (1txjA)K106 because D (zeta) conformation "forbidden" or filtered. T0506 172 :T 1txjA 105 :K T0506 174 :LSGAEEL 1txjA 107 :PDRVDVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24436 # 1fr2A.172.24 read from T0506.t2k.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)G176 (1fr2A)S29 because E (beta_S) conformation "forbidden" or filtered. T0506 172 :TDLS 1fr2A 25 :ADTS T0506 177 :AEEL 1fr2A 30 :EEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24438 # 1zaiA.172.84 read from T0506.t2k.many.frag # found chain 1zaiA in template set Warning: unaligning (T0506)A177 (1zaiA)G90 because T (delta_L) conformation "forbidden" or filtered. T0506 172 :TDLSG 1zaiA 85 :QKADD T0506 178 :EEL 1zaiA 91 :RPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24440 # 1qv9A.172.190 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 172 :TDLSGAEEL 1qv9A 191 :REEFENPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24441 # 1n1bA.172.217 read from T0506.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0506)G176 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0506 172 :TDLS 1n1bA 267 :RRPD T0506 177 :AEEL 1n1bA 272 :NPLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24443 # 1na6A.173.243 read from T0506.t2k.many.frag # found chain 1na6A in template set Warning: unaligning (T0506)D173 (1na6A)G244 because S (epsilon) conformation "forbidden" or filtered. T0506 174 :LSGAEELM 1na6A 245 :FGSVDEFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24444 # 1q0rA.173.167 read from T0506.t2k.many.frag # found chain 1q0rA in training set T0506 173 :DLSGAEELM 1q0rA 168 :PAEGRAAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24445 # 1aep.173.89 read from T0506.t2k.many.frag # found chain 1aep in template set Warning: unaligning (T0506)S175 (1aep)L92 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1aep)N93 because E (beta_S) conformation "forbidden" or filtered. T0506 173 :DL 1aep 90 :TS T0506 177 :AEELM 1aep 94 :LQDQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24447 # 1j27A.173.14 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 173 :DLSGAEELM 1j27A 15 :PARSLKEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24448 # 1oj5A.173.30 read from T0506.t2k.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)D173 (1oj5A)G284 because T (delta_L) conformation "forbidden" or filtered. T0506 174 :LSGAEELM 1oj5A 285 :RTGWEDLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24449 # 1ix9A.173.104 read from T0506.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)S175 (1ix9A)G107 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1ix9A)S108 because Y (epsilon') conformation "forbidden" or filtered. T0506 173 :DL 1ix9A 105 :DF T0506 177 :AEELM 1ix9A 109 :VDNFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24451 # 1tn6A.173.325 read from T0506.t2k.many.frag # found chain 1tn6A in training set Warning: unaligning (T0506)D173 (1tn6A)Q326 because L (left) conformation "forbidden" or filtered. T0506 174 :LSGAEELM 1tn6A 327 :CDNKEDIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24452 # 2f6sA.173.99 read from T0506.t2k.many.frag # found chain 2f6sA in template set T0506 173 :DLSGAEELM 2f6sA 78 :PQNNFNQIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24453 # 1yviA.173.67 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)G176 (1yviA)N71 because N (gamma') conformation "forbidden" or filtered. T0506 173 :DLS 1yviA 68 :PVV T0506 177 :AEELM 1yviA 72 :FDKVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24455 # 1l5oA.173.205 read from T0506.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0506)G176 (1l5oA)R209 because G (3-10) conformation "forbidden" or filtered. T0506 173 :DLS 1l5oA 206 :PPS T0506 177 :AEELM 1l5oA 210 :IDNKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24457 # 1zroA.173.52 read from T0506.t2k.many.frag # found chain 1zroA in template set Warning: unaligning (T0506)G176 (1zroA)T56 because E (beta_S) conformation "forbidden" or filtered. T0506 173 :DLS 1zroA 53 :KTY T0506 177 :AEELM 1zroA 57 :KETMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24459 # 1w2wA.173.83 read from T0506.t2k.many.frag # found chain 1w2wA in training set Warning: unaligning (T0506)G176 (1w2wA)N87 because E (beta_S) conformation "forbidden" or filtered. T0506 173 :DLS 1w2wA 84 :SLV T0506 177 :AEELM 1w2wA 88 :WESTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24461 # 1e6iA.173.66 read from T0506.t2k.many.frag # found chain 1e6iA in template set T0506 173 :DLSGAEELM 1e6iA 385 :KYQKMEDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24462 # 1h54A.173.266 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 173 :DLSGAEELM 1h54A 267 :DYDTQESLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24463 # 1hf2A.173.16 read from T0506.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)L174 (1hf2A)Y18 because Y (epsilon') conformation "forbidden" or filtered. T0506 173 :D 1hf2A 17 :D T0506 175 :SGAEELM 1hf2A 19 :QNLEEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24465 # 1no1A.173.21 read from T0506.t2k.many.frag # found chain 1no1A in template set T0506 173 :DLSGAEELM 1no1A 22 :QPDDLKGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24466 # 1h8eG.173.193 read from T0506.t2k.many.frag # found chain 1h8eG in template set T0506 173 :DLSGAEELM 1h8eG 194 :DDIDADVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24467 # 1j31A.173.11 read from T0506.t2k.many.frag # found chain 1j31A in training set T0506 173 :DLSGAEELM 1j31A 12 :KILELDKNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24468 # 1m22A.173.343 read from T0506.t2k.many.frag # found chain 1m22A in training set T0506 173 :DLSGAEELM 1m22A 381 :PLRSLADLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24469 # 1rqbA.173.334 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 173 :DLSGAEELM 1rqbA 324 :AEDKMDEVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24470 2c5rA expands to /projects/compbio/data/pdb/2c5r.pdb.gz 2c5rA:# 2c5rA.173.34 read from T0506.t2k.many.frag # adding 2c5rA to template set # found chain 2c5rA in template set Warning: unaligning (T0506)D173 (2c5rA)R97 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (2c5rA)S100 because P (beta_P) conformation "forbidden" or filtered. T0506 174 :LS 2c5rA 98 :LQ T0506 177 :AEELM 2c5rA 101 :EQEVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=24472 # 1txjA.173.105 read from T0506.t2k.many.frag # found chain 1txjA in template set Warning: unaligning (T0506)G176 (1txjA)R109 because G (3-10) conformation "forbidden" or filtered. T0506 173 :DLS 1txjA 106 :KPD T0506 177 :AEELM 1txjA 110 :VDVFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24474 # 1ku3A.173.39 read from T0506.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0506)L174 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0506 173 :D 1ku3A 405 :F T0506 175 :SGAEELM 1ku3A 407 :VTRERIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24476 # 1n1bA.173.218 read from T0506.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0506)G176 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0506 173 :DLS 1n1bA 268 :RPD T0506 177 :AEELM 1n1bA 272 :NPLIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24478 # 1kkoA.173.276 read from T0506.t2k.many.frag # found chain 1kkoA in training set Warning: unaligning (T0506)G176 (1kkoA)N280 because Y (epsilon') conformation "forbidden" or filtered. T0506 173 :DLS 1kkoA 277 :DAG T0506 177 :AEELM 1kkoA 281 :KPDQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24480 # 1xl3C.173.33 read from T0506.t2k.many.frag # found chain 1xl3C in template set Warning: unaligning (T0506)D173 (1xl3C)S34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1xl3C)T37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xl3C)V42 Warning: unaligning (T0506)M181 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xl3C)V42 T0506 174 :LS 1xl3C 35 :LP T0506 177 :AE 1xl3C 38 :PE Number of specific fragments extracted= 2 number of extra gaps= 2 total=24482 # 1cnv.173.196 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)S175 (1cnv)G199 because T (delta_L) conformation "forbidden" or filtered. T0506 173 :DL 1cnv 197 :ST T0506 176 :GAEELM 1cnv 200 :NIQRIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24484 # 1n55A.173.102 read from T0506.t2k.many.frag # found chain 1n55A in training set Warning: unaligning (T0506)L174 (1n55A)G103 because T (delta_L) conformation "forbidden" or filtered. T0506 173 :D 1n55A 102 :Y T0506 175 :SGAEELM 1n55A 104 :ETDEIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24486 # 1yg2A.173.103 read from T0506.t2k.many.frag # found chain 1yg2A in template set Warning: unaligning (T0506)G176 (1yg2A)S107 because P (beta_P) conformation "forbidden" or filtered. T0506 173 :DLS 1yg2A 104 :SVQ T0506 177 :AEELM 1yg2A 108 :AEPYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24488 # 1a3aA.173.16 read from T0506.t2k.many.frag # found chain 1a3aA in training set T0506 173 :DLSGAEELM 1a3aA 17 :KAATKEEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24489 # 1aep.174.90 read from T0506.t2k.many.frag # found chain 1aep in template set Warning: unaligning (T0506)S175 (1aep)L92 because G (3-10) conformation "forbidden" or filtered. T0506 174 :L 1aep 91 :S T0506 176 :GAEELMA 1aep 93 :NLQDQLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24491 # 1j27A.174.15 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 174 :LSGAEELMA 1j27A 16 :ARSLKEKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24492 # 1na6A.174.244 read from T0506.t2k.many.frag # found chain 1na6A in template set T0506 174 :LSGAEELMA 1na6A 245 :FGSVDEFIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24493 # 1rqbA.174.335 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 174 :LSGAEELMA 1rqbA 325 :EDKMDEVMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24494 # 1q0rA.174.168 read from T0506.t2k.many.frag # found chain 1q0rA in training set T0506 174 :LSGAEELMA 1q0rA 169 :AEGRAAEVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24495 # 1ix9A.174.105 read from T0506.t2k.many.frag # found chain 1ix9A in training set T0506 174 :LSGAEELMA 1ix9A 106 :FGSVDNFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24496 # 1m22A.174.344 read from T0506.t2k.many.frag # found chain 1m22A in training set T0506 174 :LSGAEELMA 1m22A 382 :LRSLADLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24497 # 1yviA.174.68 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)G176 (1yviA)N71 because N (gamma') conformation "forbidden" or filtered. T0506 174 :LS 1yviA 69 :VV T0506 177 :AEELMA 1yviA 72 :FDKVDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24499 # 1oj5A.174.31 read from T0506.t2k.many.frag # found chain 1oj5A in template set T0506 174 :LSGAEELMA 1oj5A 285 :RTGWEDLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24500 # 2c5rA.174.35 read from T0506.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0506)G176 (2c5rA)S100 because P (beta_P) conformation "forbidden" or filtered. T0506 174 :LS 2c5rA 98 :LQ T0506 177 :AEELMA 2c5rA 101 :EQEVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24502 # 1j31A.174.12 read from T0506.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0506)S175 (1j31A)L14 because T (delta_L) conformation "forbidden" or filtered. T0506 174 :L 1j31A 13 :I T0506 176 :GAEELMA 1j31A 15 :ELDKNYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24504 # 1n1bA.174.219 read from T0506.t2k.many.frag # found chain 1n1bA in template set Warning: unaligning (T0506)G176 (1n1bA)M271 because P (beta_P) conformation "forbidden" or filtered. T0506 174 :LS 1n1bA 269 :PD T0506 177 :AEELMA 1n1bA 272 :NPLIFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24506 # 1l5oA.174.206 read from T0506.t2k.many.frag # found chain 1l5oA in training set T0506 174 :LSGAEELMA 1l5oA 207 :PSRIDNKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24507 # 1cnv.174.197 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)G176 (1cnv)N200 because D (zeta) conformation "forbidden" or filtered. T0506 174 :LS 1cnv 198 :TG T0506 177 :AEELMA 1cnv 201 :IQRIRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24509 # 1tn6A.174.326 read from T0506.t2k.many.frag # found chain 1tn6A in training set T0506 174 :LSGAEELMA 1tn6A 327 :CDNKEDILN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24510 # 1hf2A.174.17 read from T0506.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)S175 (1hf2A)Q19 because G (3-10) conformation "forbidden" or filtered. T0506 174 :L 1hf2A 18 :Y T0506 176 :GAEELMA 1hf2A 20 :NLEEVLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24512 1hynP expands to /projects/compbio/data/pdb/1hyn.pdb.gz 1hynP:# 1hynP.174.300 read from T0506.t2k.many.frag # adding 1hynP to template set # found chain 1hynP in template set Warning: unaligning (T0506)G176 (1hynP)S303 because Y (epsilon') conformation "forbidden" or filtered. T0506 174 :LS 1hynP 301 :AQ T0506 177 :AEELMA 1hynP 304 :RGELLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=24514 # 1ku3A.174.40 read from T0506.t2k.many.frag # found chain 1ku3A in training set Warning: unaligning (T0506)L174 (1ku3A)G406 because L (left) conformation "forbidden" or filtered. T0506 175 :SGAEELMA 1ku3A 407 :VTRERIRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=24515 # 1w2wA.174.84 read from T0506.t2k.many.frag # found chain 1w2wA in training set Warning: unaligning (T0506)G176 (1w2wA)N87 because E (beta_S) conformation "forbidden" or filtered. T0506 174 :LS 1w2wA 85 :LV T0506 177 :AEELMA 1w2wA 88 :WESTKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24517 1lla expands to /projects/compbio/data/pdb/1lla.pdb.gz 1lla:Warning: there is no chain 1lla will retry with 1llaA # 1lla.174.66 read from T0506.t2k.many.frag # adding 1lla to template set # found chain 1lla in template set T0506 174 :LSGAEELMA 1lla 67 :AGDFNDFIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24518 # 2f6sA.174.100 read from T0506.t2k.many.frag # found chain 2f6sA in template set T0506 174 :LSGAEELMA 2f6sA 79 :QNNFNQIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24519 # 1e6iA.174.67 read from T0506.t2k.many.frag # found chain 1e6iA in template set T0506 174 :LSGAEELMA 1e6iA 386 :YQKMEDFIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24520 # 1txjA.174.106 read from T0506.t2k.many.frag # found chain 1txjA in template set Warning: unaligning (T0506)G176 (1txjA)R109 because G (3-10) conformation "forbidden" or filtered. T0506 174 :LS 1txjA 107 :PD T0506 177 :AEELMA 1txjA 110 :VDVFKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=24522 # 1zroA.174.53 read from T0506.t2k.many.frag # found chain 1zroA in template set Warning: unaligning (T0506)G176 (1zroA)T56 because E (beta_S) conformation "forbidden" or filtered. T0506 174 :LS 1zroA 54 :TY T0506 177 :AEELMA 1zroA 57 :KETMKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=24524 # 1p1xA.174.80 read from T0506.t2k.many.frag # found chain 1p1xA in training set Warning: unaligning (T0506)G176 (1p1xA)D82 because N (gamma') conformation "forbidden" or filtered. T0506 174 :LS 1p1xA 80 :ND T0506 177 :AEELMA 1p1xA 83 :IDIALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24526 2d81A expands to /projects/compbio/data/pdb/2d81.pdb.gz 2d81A:# 2d81A.174.63 read from T0506.t2k.many.frag # adding 2d81A to template set # found chain 2d81A in template set T0506 174 :LSGAEELMA 2d81A 84 :YPSITTPTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24527 # 1h8eG.174.194 read from T0506.t2k.many.frag # found chain 1h8eG in template set Warning: unaligning (T0506)S175 (1h8eG)I196 because L (left) conformation "forbidden" or filtered. T0506 174 :L 1h8eG 195 :D T0506 176 :GAEELMA 1h8eG 197 :DADVLRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=24529 # 1kkoA.174.277 read from T0506.t2k.many.frag # found chain 1kkoA in training set T0506 174 :LSGAEELMA 1kkoA 278 :AGNKPDQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24530 # 1oqvA.174.52 read from T0506.t2k.many.frag # found chain 1oqvA in training set Warning: unaligning (T0506)L174 (1oqvA)T60 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1oqvA)D62 because Y (epsilon') conformation "forbidden" or filtered. T0506 175 :S 1oqvA 61 :A T0506 177 :AEELMA 1oqvA 63 :ATAASK Number of specific fragments extracted= 2 number of extra gaps= 2 total=24532 # 1h54A.174.267 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 174 :LSGAEELMA 1h54A 268 :YDTQESLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24533 # 1rqbA.175.336 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 175 :SGAEELMAA 1rqbA 326 :DKMDEVMAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24534 # 1j27A.175.16 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 175 :SGAEELMAA 1j27A 17 :RSLKEKRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24535 # 1n1bA.175.220 read from T0506.t2k.many.frag # found chain 1n1bA in template set T0506 175 :SGAEELMAA 1n1bA 270 :DMNPLIFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24536 # 1aep.175.91 read from T0506.t2k.many.frag # found chain 1aep in template set Warning: unaligning (T0506)G176 (1aep)N93 because E (beta_S) conformation "forbidden" or filtered. T0506 175 :S 1aep 92 :L T0506 177 :AEELMAA 1aep 94 :LQDQLNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24538 # 1ix9A.175.106 read from T0506.t2k.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)G176 (1ix9A)S108 because Y (epsilon') conformation "forbidden" or filtered. T0506 175 :S 1ix9A 107 :G T0506 177 :AEELMAA 1ix9A 109 :VDNFKAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24540 # 1hynP.175.301 read from T0506.t2k.many.frag # found chain 1hynP in template set T0506 175 :SGAEELMAA 1hynP 302 :QSRGELLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24541 # 1lla.175.67 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 175 :SGAEELMAA 1lla 68 :GDFNDFIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24542 # 1ash.175.80 read from T0506.t2k.many.frag # found chain 1ash in template set Warning: unaligning (T0506)G176 (1ash)D81 because D (zeta) conformation "forbidden" or filtered. T0506 175 :S 1ash 80 :D T0506 177 :AEELMAA 1ash 82 :RETFNAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24544 # 1yviA.175.69 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)G176 (1yviA)N71 because N (gamma') conformation "forbidden" or filtered. T0506 175 :S 1yviA 70 :V T0506 177 :AEELMAA 1yviA 72 :FDKVDAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24546 1bc5A expands to /projects/compbio/data/pdb/1bc5.pdb.gz 1bc5A:# 1bc5A.175.29 read from T0506.t2k.many.frag # adding 1bc5A to template set # found chain 1bc5A in template set T0506 175 :SGAEELMAA 1bc5A 45 :HKRDMVYNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24547 # 2d81A.175.64 read from T0506.t2k.many.frag # found chain 2d81A in template set T0506 175 :SGAEELMAA 2d81A 85 :PSITTPTAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24548 # 1e2kA.175.310 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 175 :SGAEELMAA 1e2kA 356 :GSIPTICDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24549 # 1p1xA.175.81 read from T0506.t2k.many.frag # found chain 1p1xA in training set T0506 175 :SGAEELMAA 1p1xA 81 :DDIDIALAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24550 # 1txjA.175.107 read from T0506.t2k.many.frag # found chain 1txjA in template set T0506 175 :SGAEELMAA 1txjA 108 :DRVDVFKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24551 # 1na6A.175.245 read from T0506.t2k.many.frag # found chain 1na6A in template set T0506 175 :SGAEELMAA 1na6A 246 :GSVDEFIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24552 # 1m22A.175.345 read from T0506.t2k.many.frag # found chain 1m22A in training set T0506 175 :SGAEELMAA 1m22A 383 :RSLADLIAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24553 # 1cnv.175.198 read from T0506.t2k.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)S175 (1cnv)G199 because T (delta_L) conformation "forbidden" or filtered. T0506 176 :GAEELMAA 1cnv 200 :NIQRIRNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24554 # 1j31A.175.13 read from T0506.t2k.many.frag # found chain 1j31A in training set Warning: unaligning (T0506)S175 (1j31A)L14 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1j31A)E15 because N (gamma') conformation "forbidden" or filtered. T0506 177 :AEELMAA 1j31A 16 :LDKNYSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24555 # 1ku3A.175.41 read from T0506.t2k.many.frag # found chain 1ku3A in training set T0506 175 :SGAEELMAA 1ku3A 407 :VTRERIRQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24556 # 1u02A.175.124 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 175 :SGAEELMAA 1u02A 125 :DMKPKLRSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24557 # 2c5rA.175.36 read from T0506.t2k.many.frag # found chain 2c5rA in template set T0506 175 :SGAEELMAA 2c5rA 99 :QSEQEVLNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24558 # 1u14A.175.46 read from T0506.t2k.many.frag # found chain 1u14A in training set T0506 175 :SGAEELMAA 1u14A 46 :FGSEETRAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24559 # 1oj5A.175.32 read from T0506.t2k.many.frag # found chain 1oj5A in template set T0506 175 :SGAEELMAA 1oj5A 286 :TGWEDLVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24560 # 1h54A.175.268 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 175 :SGAEELMAA 1h54A 269 :DTQESLTAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24561 # 1tn6A.175.327 read from T0506.t2k.many.frag # found chain 1tn6A in training set T0506 175 :SGAEELMAA 1tn6A 328 :DNKEDILNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24562 # 1q0rA.175.169 read from T0506.t2k.many.frag # found chain 1q0rA in training set Warning: unaligning (T0506)G176 (1q0rA)G171 because S (epsilon) conformation "forbidden" or filtered. T0506 175 :S 1q0rA 170 :E T0506 177 :AEELMAA 1q0rA 172 :RAAEVAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=24564 # 1l5oA.175.207 read from T0506.t2k.many.frag # found chain 1l5oA in training set Warning: unaligning (T0506)G176 (1l5oA)R209 because G (3-10) conformation "forbidden" or filtered. T0506 175 :S 1l5oA 208 :S T0506 177 :AEELMAA 1l5oA 210 :IDNKVDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24566 # 1hf2A.175.18 read from T0506.t2k.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)S175 (1hf2A)Q19 because G (3-10) conformation "forbidden" or filtered. T0506 176 :GAEELMAA 1hf2A 20 :NLEEVLNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24567 # 1oqvA.175.53 read from T0506.t2k.many.frag # found chain 1oqvA in training set Warning: unaligning (T0506)G176 (1oqvA)D62 because Y (epsilon') conformation "forbidden" or filtered. T0506 175 :S 1oqvA 61 :A T0506 177 :AEELMAA 1oqvA 63 :ATAASKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24569 # 1jx4A.175.115 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 175 :SGAEELMAA 1jx4A 116 :RDYREAYNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24570 # 1rqbA.176.337 read from T0506.t2k.many.frag # found chain 1rqbA in template set Warning: unaligning (T0506)G176 (1rqbA)K327 because G (3-10) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1rqbA 328 :MDEVMAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24571 # 1n1bA.176.221 read from T0506.t2k.many.frag # found chain 1n1bA in template set T0506 176 :GAEELMAAA 1n1bA 271 :MNPLIFELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24572 # 1lla.176.68 read from T0506.t2k.many.frag # found chain 1lla in template set Warning: unaligning (T0506)G176 (1lla)D69 because Y (epsilon') conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1lla 70 :FNDFIEIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24573 # 1aep.176.92 read from T0506.t2k.many.frag # found chain 1aep in template set Warning: unaligning (T0506)G176 (1aep)N93 because E (beta_S) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1aep 94 :LQDQLNSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24574 # 1hynP.176.302 read from T0506.t2k.many.frag # found chain 1hynP in template set T0506 176 :GAEELMAAA 1hynP 303 :SRGELLHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24575 # 1j27A.176.17 read from T0506.t2k.many.frag # found chain 1j27A in training set Warning: unaligning (T0506)G176 (1j27A)S18 because Y (epsilon') conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1j27A 19 :LKEKRALI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24576 # 1bc5A.176.30 read from T0506.t2k.many.frag # found chain 1bc5A in template set T0506 176 :GAEELMAAA 1bc5A 46 :KRDMVYNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24577 # 1e2kA.176.311 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 176 :GAEELMAAA 1e2kA 357 :SIPTICDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24578 # 1j31A.176.14 read from T0506.t2k.many.frag # found chain 1j31A in training set T0506 176 :GAEELMAAA 1j31A 15 :ELDKNYSKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24579 # 1p1xA.176.82 read from T0506.t2k.many.frag # found chain 1p1xA in training set T0506 176 :GAEELMAAA 1p1xA 82 :DIDIALAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24580 # 2d81A.176.65 read from T0506.t2k.many.frag # found chain 2d81A in template set Warning: unaligning (T0506)G176 (2d81A)S86 because P (beta_P) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 2d81A 87 :ITTPTANM Number of specific fragments extracted= 1 number of extra gaps= 1 total=24581 # 1yviA.176.70 read from T0506.t2k.many.frag # found chain 1yviA in template set Warning: unaligning (T0506)G176 (1yviA)N71 because N (gamma') conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1yviA 72 :FDKVDAYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24582 # 1u14A.176.47 read from T0506.t2k.many.frag # found chain 1u14A in training set Warning: unaligning (T0506)G176 (1u14A)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1u14A 48 :SEETRAGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24583 # 1w2wA.176.86 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 176 :GAEELMAAA 1w2wA 87 :NWESTKTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24584 # 1h54A.176.269 read from T0506.t2k.many.frag # found chain 1h54A in template set Warning: unaligning (T0506)G176 (1h54A)T270 because E (beta_S) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1h54A 271 :QESLTAAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=24585 # 1m22A.176.346 read from T0506.t2k.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)G176 (1m22A)S384 because Y (epsilon') conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1m22A 385 :LADLIAFN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24586 # 1tn6A.176.328 read from T0506.t2k.many.frag # found chain 1tn6A in training set T0506 176 :GAEELMAAA 1tn6A 329 :NKEDILNKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24587 # 1jx4A.176.116 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 176 :GAEELMAAA 1jx4A 117 :DYREAYNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24588 # 1qv9A.176.194 read from T0506.t2k.many.frag # found chain 1qv9A in training set T0506 176 :GAEELMAAA 1qv9A 195 :ENPYAMVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24589 # 1txjA.176.108 read from T0506.t2k.many.frag # found chain 1txjA in template set Warning: unaligning (T0506)G176 (1txjA)R109 because G (3-10) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1txjA 110 :VDVFKTKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24590 # 1ash.176.81 read from T0506.t2k.many.frag # found chain 1ash in template set T0506 176 :GAEELMAAA 1ash 81 :DRETFNAYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24591 # 1s9rA.176.49 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 176 :GAEELMAAA 1s9rA 50 :ESHDARKEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24592 # 1u02A.176.125 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 176 :GAEELMAAA 1u02A 126 :MKPKLRSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24593 # 1n55A.176.105 read from T0506.t2k.many.frag # found chain 1n55A in training set Warning: unaligning (T0506)G176 (1n55A)T105 because P (beta_P) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1n55A 106 :DEIVAQKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24594 # 1ix9A.176.107 read from T0506.t2k.many.frag # found chain 1ix9A in training set T0506 176 :GAEELMAAA 1ix9A 108 :SVDNFKAEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24595 # 1r6wA.176.56 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 176 :GAEELMAAA 1r6wA 55 :TWEEAQSVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24596 # 1cnv.176.199 read from T0506.t2k.many.frag # found chain 1cnv in training set T0506 176 :GAEELMAAA 1cnv 200 :NIQRIRNAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24597 # 1g60A.176.44 read from T0506.t2k.many.frag # found chain 1g60A in training set Warning: unaligning (T0506)G176 (1g60A)S45 because Y (epsilon') conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1g60A 46 :HNEFLAFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=24598 # 2c5rA.176.37 read from T0506.t2k.many.frag # found chain 2c5rA in template set Warning: unaligning (T0506)G176 (2c5rA)S100 because P (beta_P) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 2c5rA 101 :EQEVLNYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=24599 # 1oqvA.176.54 read from T0506.t2k.many.frag # found chain 1oqvA in training set Warning: unaligning (T0506)G176 (1oqvA)D62 because Y (epsilon') conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1oqvA 63 :ATAASKLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=24600 # 1lla.177.69 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 177 :AEELMAAAE 1lla 70 :FNDFIEIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24601 # 1rqbA.177.338 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 177 :AEELMAAAE 1rqbA 328 :MDEVMAEVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24602 # 1n1bA.177.222 read from T0506.t2k.many.frag # found chain 1n1bA in template set T0506 177 :AEELMAAAE 1n1bA 272 :NPLIFELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24603 # 1aep.177.93 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 177 :AEELMAAAE 1aep 94 :LQDQLNSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24604 # 1e2kA.177.312 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 177 :AEELMAAAE 1e2kA 358 :IPTICDLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24605 # 1hynP.177.303 read from T0506.t2k.many.frag # found chain 1hynP in template set T0506 177 :AEELMAAAE 1hynP 304 :RGELLHSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24606 # 1j27A.177.18 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 177 :AEELMAAAE 1j27A 19 :LKEKRALIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24607 # 1s9rA.177.50 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 177 :AEELMAAAE 1s9rA 51 :SHDARKEHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24608 # 1bc5A.177.31 read from T0506.t2k.many.frag # found chain 1bc5A in template set T0506 177 :AEELMAAAE 1bc5A 47 :RDMVYNRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24609 # 1vjuA.177.149 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 177 :AEELMAAAE 1vjuA 150 :CRDFHQVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24610 # 1oh0A.177.5 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 177 :AEELMAAAE 1oh0A 6 :AQEVQGLMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24611 # 1hz4A.177.29 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 177 :AEELMAAAE 1hz4A 28 :PDEAERLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24612 # 1r6wA.177.57 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 177 :AEELMAAAE 1r6wA 56 :WEEAQSVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24613 # 1j31A.177.15 read from T0506.t2k.many.frag # found chain 1j31A in training set T0506 177 :AEELMAAAE 1j31A 16 :LDKNYSKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24614 # 1txjA.177.109 read from T0506.t2k.many.frag # found chain 1txjA in template set T0506 177 :AEELMAAAE 1txjA 110 :VDVFKTKAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24615 # 1p1xA.177.83 read from T0506.t2k.many.frag # found chain 1p1xA in training set T0506 177 :AEELMAAAE 1p1xA 83 :IDIALAETR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24616 # 1u14A.177.48 read from T0506.t2k.many.frag # found chain 1u14A in training set T0506 177 :AEELMAAAE 1u14A 48 :SEETRAGAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24617 1wuiL expands to /projects/compbio/data/pdb/1wui.pdb.gz 1wuiL:Skipped atom 2952, because occupancy 0.430 <= existing 0.570 in 1wuiL Skipped atom 2954, because occupancy 0.430 <= existing 0.570 in 1wuiL Skipped atom 2956, because occupancy 0.430 <= existing 0.570 in 1wuiL Skipped atom 2958, because occupancy 0.430 <= existing 0.570 in 1wuiL Skipped atom 2960, because occupancy 0.430 <= existing 0.570 in 1wuiL Skipped atom 2962, because occupancy 0.430 <= existing 0.570 in 1wuiL Skipped atom 4136, because occupancy 0.410 <= existing 0.590 in 1wuiL Skipped atom 4138, because occupancy 0.410 <= existing 0.590 in 1wuiL Skipped atom 4140, because occupancy 0.410 <= existing 0.590 in 1wuiL # 1wuiL.177.236 read from T0506.t2k.many.frag # adding 1wuiL to template set # found chain 1wuiL in template set T0506 177 :AEELMAAAE 1wuiL 255 :IAEFEALWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24618 # 1yviA.177.71 read from T0506.t2k.many.frag # found chain 1yviA in template set T0506 177 :AEELMAAAE 1yviA 72 :FDKVDAYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24619 # 2d81A.177.66 read from T0506.t2k.many.frag # found chain 2d81A in template set T0506 177 :AEELMAAAE 2d81A 87 :ITTPTANMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24620 1bea expands to /projects/compbio/data/pdb/1bea.pdb.gz 1bea:Warning: there is no chain 1bea will retry with 1beaA Skipped atom 36, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 38, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 40, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 42, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 44, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 46, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 48, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 50, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 52, because occupancy 0.250 <= existing 0.750 in 1bea Skipped atom 54, because occupancy 0.250 <= existing 0.750 in 1bea # 1bea.177.36 read from T0506.t2k.many.frag # adding 1bea to template set # found chain 1bea in template set T0506 177 :AEELMAAAE 1bea 37 :WPELKRRCC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24621 # 1vr8A.177.125 read from T0506.t2k.many.frag # found chain 1vr8A in training set T0506 177 :AEELMAAAE 1vr8A 138 :VEEFVKHVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24622 1nz6A expands to /projects/compbio/data/pdb/1nz6.pdb.gz 1nz6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1nz6A.177.49 read from T0506.t2k.many.frag # adding 1nz6A to template set # found chain 1nz6A in template set T0506 177 :AEELMAAAE 1nz6A 47 :PEQVKKVYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24623 # 1ks8A.177.269 read from T0506.t2k.many.frag # found chain 1ks8A in training set T0506 177 :AEELMAAAE 1ks8A 270 :KQAYKDTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24624 # 2bl8A.177.23 read from T0506.t2k.many.frag # found chain 2bl8A in training set T0506 177 :AEELMAAAE 2bl8A 24 :YSDILEVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24625 # 1h54A.177.270 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 177 :AEELMAAAE 1h54A 271 :QESLTAAMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24626 # 1w2wA.177.87 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 177 :AEELMAAAE 1w2wA 88 :WESTKTVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24627 # 1u02A.177.126 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 177 :AEELMAAAE 1u02A 127 :KPKLRSRIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24628 1xtpA expands to /projects/compbio/data/pdb/1xtp.pdb.gz 1xtpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1724, because occupancy 0.350 <= existing 0.650 in 1xtpA Skipped atom 1726, because occupancy 0.350 <= existing 0.650 in 1xtpA Skipped atom 1728, because occupancy 0.350 <= existing 0.650 in 1xtpA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xtpA.177.74 read from T0506.t2k.many.frag # adding 1xtpA to template set # found chain 1xtpA in template set T0506 177 :AEELMAAAE 1xtpA 75 :HDVDIEGSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24629 1f5qB expands to /projects/compbio/data/pdb/1f5q.pdb.gz 1f5qB:Skipped atom 2781, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2783, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2785, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2787, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2789, because occupancy 0.500 <= existing 0.500 in 1f5qB Skipped atom 2791, because occupancy 0.500 <= existing 0.500 in 1f5qB # 1f5qB.177.125 read from T0506.t2k.many.frag # adding 1f5qB to template set # found chain 1f5qB in template set T0506 177 :AEELMAAAE 1f5qB 126 :ADKLLTLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24630 # 1lla.178.70 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 178 :EELMAAAES 1lla 71 :NDFIEIAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24631 # 1rqbA.178.339 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 178 :EELMAAAES 1rqbA 329 :DEVMAEVPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24632 # 1e2kA.178.313 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 178 :EELMAAAES 1e2kA 359 :PTICDLART Number of specific fragments extracted= 1 number of extra gaps= 0 total=24633 # 1s9rA.178.51 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 178 :EELMAAAES 1s9rA 52 :HDARKEHKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24634 # 1aep.178.94 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 178 :EELMAAAES 1aep 95 :QDQLNSLQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24635 # 1vjuA.178.150 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 178 :EELMAAAES 1vjuA 151 :RDFHQVAQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24636 # 1hz4A.178.30 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 178 :EELMAAAES 1hz4A 29 :DEAERLAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24637 # 1hynP.178.304 read from T0506.t2k.many.frag # found chain 1hynP in template set T0506 178 :EELMAAAES 1hynP 305 :GELLHSLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24638 # 1j27A.178.19 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 178 :EELMAAAES 1j27A 20 :KEKRALIKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24639 # 1bc5A.178.32 read from T0506.t2k.many.frag # found chain 1bc5A in template set T0506 178 :EELMAAAES 1bc5A 48 :DMVYNRLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24640 # 1oh0A.178.6 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 178 :EELMAAAES 1oh0A 7 :QEVQGLMAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24641 # 1n1bA.178.223 read from T0506.t2k.many.frag # found chain 1n1bA in template set T0506 178 :EELMAAAES 1n1bA 273 :PLIFELAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24642 # 1tqhA.178.66 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 178 :EELMAAAES 1tqhA 67 :DDWWQDVMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24643 # 1r6wA.178.58 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 178 :EELMAAAES 1r6wA 57 :EEAQSVLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24644 # 1j31A.178.16 read from T0506.t2k.many.frag # found chain 1j31A in training set T0506 178 :EELMAAAES 1j31A 17 :DKNYSKAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24645 # 1p1xA.178.84 read from T0506.t2k.many.frag # found chain 1p1xA in training set T0506 178 :EELMAAAES 1p1xA 84 :DIALAETRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24646 # 1nz6A.178.50 read from T0506.t2k.many.frag # found chain 1nz6A in template set T0506 178 :EELMAAAES 1nz6A 48 :EQVKKVYRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24647 # 1w2wA.178.88 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 178 :EELMAAAES 1w2wA 89 :ESTKTVLNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24648 # 2d81A.178.67 read from T0506.t2k.many.frag # found chain 2d81A in template set T0506 178 :EELMAAAES 2d81A 88 :TTPTANMKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24649 # 1h54A.178.271 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 178 :EELMAAAES 1h54A 272 :ESLTAAMHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24650 # 1jx4A.178.118 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 178 :EELMAAAES 1jx4A 119 :REAYNLGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24651 # 1u14A.178.49 read from T0506.t2k.many.frag # found chain 1u14A in training set T0506 178 :EELMAAAES 1u14A 49 :EETRAGARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24652 # 1xtpA.178.75 read from T0506.t2k.many.frag # found chain 1xtpA in template set T0506 178 :EELMAAAES 1xtpA 76 :DVDIEGSRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24653 # 1yviA.178.72 read from T0506.t2k.many.frag # found chain 1yviA in template set T0506 178 :EELMAAAES 1yviA 73 :DKVDAYVHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24654 # 1mk0A.178.68 read from T0506.t2k.many.frag # found chain 1mk0A in training set T0506 178 :EELMAAAES 1mk0A 69 :DLIIERANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24655 # 1wuiL.178.237 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 178 :EELMAAAES 1wuiL 256 :AEFEALWKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24656 # 1bea.178.37 read from T0506.t2k.many.frag # found chain 1bea in template set T0506 178 :EELMAAAES 1bea 38 :PELKRRCCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24657 # 1vr8A.178.126 read from T0506.t2k.many.frag # found chain 1vr8A in training set T0506 178 :EELMAAAES 1vr8A 139 :EEFVKHVYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24658 # 1txjA.178.110 read from T0506.t2k.many.frag # found chain 1txjA in template set T0506 178 :EELMAAAES 1txjA 111 :DVFKTKAQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24659 1u24A expands to /projects/compbio/data/pdb/1u24.pdb.gz 1u24A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u24A.178.150 read from T0506.t2k.many.frag # adding 1u24A to template set # found chain 1u24A in template set T0506 178 :EELMAAAES 1u24A 151 :HEALADERH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24660 # 1lla.179.71 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 179 :ELMAAAESE 1lla 72 :DFIEIAKEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24661 # 1s9rA.179.52 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 179 :ELMAAAESE 1s9rA 53 :DARKEHKQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24662 # 1hz4A.179.31 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 179 :ELMAAAESE 1hz4A 30 :EAERLAKLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24663 # 1vjuA.179.151 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 179 :ELMAAAESE 1vjuA 152 :DFHQVAQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24664 # 1rqbA.179.340 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 179 :ELMAAAESE 1rqbA 330 :EVMAEVPRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24665 # 1e2kA.179.314 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 179 :ELMAAAESE 1e2kA 360 :TICDLARTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24666 # 1aep.179.95 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 179 :ELMAAAESE 1aep 96 :DQLNSLQSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24667 # 1oh0A.179.7 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 179 :ELMAAAESE 1oh0A 8 :EVQGLMARY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24668 # 1hynP.179.305 read from T0506.t2k.many.frag # found chain 1hynP in template set T0506 179 :ELMAAAESE 1hynP 306 :ELLHSLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24669 # 1nz6A.179.51 read from T0506.t2k.many.frag # found chain 1nz6A in template set T0506 179 :ELMAAAESE 1nz6A 49 :QVKKVYRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24670 # 1r6wA.179.59 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 179 :ELMAAAESE 1r6wA 58 :EAQSVLLAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24671 # 1tqhA.179.67 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 179 :ELMAAAESE 1tqhA 68 :DWWQDVMNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24672 # 1yviA.179.73 read from T0506.t2k.many.frag # found chain 1yviA in template set T0506 179 :ELMAAAESE 1yviA 74 :KVDAYVHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24673 # 1j27A.179.20 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 179 :ELMAAAESE 1j27A 21 :EKRALIKPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24674 # 1n1bA.179.224 read from T0506.t2k.many.frag # found chain 1n1bA in template set T0506 179 :ELMAAAESE 1n1bA 274 :LIFELAKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24675 # 1n8vA.179.60 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 179 :ELMAAAESE 1n8vA 61 :NQEKGAYRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24676 # 1bc5A.179.33 read from T0506.t2k.many.frag # found chain 1bc5A in template set T0506 179 :ELMAAAESE 1bc5A 49 :MVYNRLVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24677 # 1wuiL.179.238 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 179 :ELMAAAESE 1wuiL 257 :EFEALWKET Number of specific fragments extracted= 1 number of extra gaps= 0 total=24678 # 1w2wA.179.89 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 179 :ELMAAAESE 1w2wA 90 :STKTVLNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24679 # 1p1xA.179.85 read from T0506.t2k.many.frag # found chain 1p1xA in training set T0506 179 :ELMAAAESE 1p1xA 85 :IALAETRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24680 # 1vr8A.179.127 read from T0506.t2k.many.frag # found chain 1vr8A in training set T0506 179 :ELMAAAESE 1vr8A 140 :EFVKHVYRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24681 # 1txjA.179.111 read from T0506.t2k.many.frag # found chain 1txjA in template set T0506 179 :ELMAAAESE 1txjA 112 :VFKTKAQPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24682 # 1xtpA.179.76 read from T0506.t2k.many.frag # found chain 1xtpA in template set T0506 179 :ELMAAAESE 1xtpA 77 :VDIEGSRNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24683 # 1u24A.179.151 read from T0506.t2k.many.frag # found chain 1u24A in template set T0506 179 :ELMAAAESE 1u24A 152 :EALADERHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24684 # 1j31A.179.17 read from T0506.t2k.many.frag # found chain 1j31A in training set T0506 179 :ELMAAAESE 1j31A 18 :KNYSKAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24685 # 1h54A.179.272 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 179 :ELMAAAESE 1h54A 273 :SLTAAMHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24686 # 1t3tA.179.192 read from T0506.t2k.many.frag # found chain 1t3tA in template set T0506 179 :ELMAAAESE 1t3tA 185 :DEIDYLQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24687 # 1r5yA.179.238 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 179 :ELMAAAESE 1r5yA 239 :EMFRVLDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24688 # 2d81A.179.68 read from T0506.t2k.many.frag # found chain 2d81A in template set T0506 179 :ELMAAAESE 2d81A 89 :TPTANMKSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24689 # 1eexA.179.454 read from T0506.t2k.many.frag # found chain 1eexA in training set T0506 179 :ELMAAAESE 1eexA 455 :EDIKFAQEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24690 # 1hz4A.180.32 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 180 :LMAAAESEA 1hz4A 31 :AERLAKLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24691 # 1lla.180.72 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 180 :LMAAAESEA 1lla 73 :FIEIAKEAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24692 # 1s9rA.180.53 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 180 :LMAAAESEA 1s9rA 54 :ARKEHKQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24693 # 1vjuA.180.152 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 180 :LMAAAESEA 1vjuA 153 :FHQVAQDLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=24694 # 1e2kA.180.315 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 180 :LMAAAESEA 1e2kA 361 :ICDLARTFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24695 # 1n8vA.180.61 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 180 :LMAAAESEA 1n8vA 62 :QEKGAYRVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24696 # 1hynP.180.306 read from T0506.t2k.many.frag # found chain 1hynP in template set T0506 180 :LMAAAESEA 1hynP 307 :LLHSLEGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24697 # 1wuiL.180.239 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 180 :LMAAAESEA 1wuiL 258 :FEALWKETK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24698 # 1oh0A.180.8 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 180 :LMAAAESEA 1oh0A 9 :VQGLMARYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24699 # 1nz6A.180.52 read from T0506.t2k.many.frag # found chain 1nz6A in template set T0506 180 :LMAAAESEA 1nz6A 50 :VKKVYRKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24700 # 1rqbA.180.341 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 180 :LMAAAESEA 1rqbA 331 :VMAEVPRVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24701 # 1aep.180.96 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 180 :LMAAAESEA 1aep 97 :QLNSLQSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24702 # 1yviA.180.74 read from T0506.t2k.many.frag # found chain 1yviA in template set T0506 180 :LMAAAESEA 1yviA 75 :VDAYVHQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24703 # 1r6wA.180.60 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 180 :LMAAAESEA 1r6wA 59 :AQSVLLAWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24704 # 1u24A.180.152 read from T0506.t2k.many.frag # found chain 1u24A in template set T0506 180 :LMAAAESEA 1u24A 153 :ALADERHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24705 # 1tqhA.180.68 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 180 :LMAAAESEA 1tqhA 69 :WWQDVMNGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24706 # 1y9iA.180.97 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 180 :LMAAAESEA 1y9iA 98 :DEILALSIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24707 # 1j27A.180.21 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 180 :LMAAAESEA 1j27A 22 :KRALIKPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24708 # 1r5yA.180.239 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 180 :LMAAAESEA 1r5yA 240 :MFRVLDFSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24709 # 1f5qB.180.128 read from T0506.t2k.many.frag # found chain 1f5qB in template set T0506 180 :LMAAAESEA 1f5qB 129 :LLTLEVKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24710 1h8eA expands to /projects/compbio/data/pdb/1h8e.pdb.gz 1h8eA:# 1h8eA.180.460 read from T0506.t2k.many.frag # adding 1h8eA to template set # found chain 1h8eA in template set T0506 180 :LMAAAESEA 1h8eA 461 :ITKFENAFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24711 # 1xtpA.180.77 read from T0506.t2k.many.frag # found chain 1xtpA in template set T0506 180 :LMAAAESEA 1xtpA 78 :DIEGSRNFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24712 # 1gudA.180.179 read from T0506.t2k.many.frag # found chain 1gudA in training set T0506 180 :LMAAAESEA 1gudA 180 :ALDVATNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24713 1dvkA expands to /projects/compbio/data/pdb/1dvk.pdb.gz 1dvkA:# 1dvkA.180.60 read from T0506.t2k.many.frag # adding 1dvkA to template set # found chain 1dvkA in template set T0506 180 :LMAAAESEA 1dvkA 139 :TKKALFPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24714 # 1eexA.180.455 read from T0506.t2k.many.frag # found chain 1eexA in training set T0506 180 :LMAAAESEA 1eexA 456 :DIKFAQEII Number of specific fragments extracted= 1 number of extra gaps= 0 total=24715 # 1n1bA.180.225 read from T0506.t2k.many.frag # found chain 1n1bA in template set T0506 180 :LMAAAESEA 1n1bA 275 :IFELAKLNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24716 # 1j31A.180.18 read from T0506.t2k.many.frag # found chain 1j31A in training set T0506 180 :LMAAAESEA 1j31A 19 :NYSKAEKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24717 # 1ra0A.180.103 read from T0506.t2k.many.frag # found chain 1ra0A in training set T0506 180 :LMAAAESEA 1ra0A 100 :VKQRAWQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24718 # 1vr8A.180.128 read from T0506.t2k.many.frag # found chain 1vr8A in training set T0506 180 :LMAAAESEA 1vr8A 141 :FVKHVYRVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24719 # 1h54A.180.273 read from T0506.t2k.many.frag # found chain 1h54A in template set T0506 180 :LMAAAESEA 1h54A 274 :LTAAMHQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24720 # 1s9rA.181.54 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 181 :MAAAESEAT 1s9rA 55 :RKEHKQFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24721 # 1vjuA.181.153 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 181 :MAAAESEAT 1vjuA 154 :HQVAQDLCK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24722 # 1hz4A.181.33 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 181 :MAAAESEAT 1hz4A 32 :ERLAKLALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24723 # 1lla.181.73 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 181 :MAAAESEAT 1lla 74 :IEIAKEART Number of specific fragments extracted= 1 number of extra gaps= 0 total=24724 # 1oh0A.181.9 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 181 :MAAAESEAT 1oh0A 10 :QGLMARYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24725 # 1n8vA.181.62 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 181 :MAAAESEAT 1n8vA 63 :EKGAYRVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24726 # 1e2kA.181.316 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 181 :MAAAESEAT 1e2kA 362 :CDLARTFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24727 # 1wuiL.181.240 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 181 :MAAAESEAT 1wuiL 259 :EALWKETKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24728 # 1tqhA.181.69 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 181 :MAAAESEAT 1tqhA 70 :WQDVMNGYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24729 # 1aep.181.97 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 181 :MAAAESEAT 1aep 98 :LNSLQSALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24730 # 1xtpA.181.78 read from T0506.t2k.many.frag # found chain 1xtpA in template set T0506 181 :MAAAESEAT 1xtpA 79 :IEGSRNFIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24731 # 1nz6A.181.53 read from T0506.t2k.many.frag # found chain 1nz6A in template set T0506 181 :MAAAESEAT 1nz6A 51 :KKVYRKAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24732 2fupA expands to /projects/compbio/data/pdb/2fup.pdb.gz 2fupA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 101, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 105, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 111, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 130, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 140, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 159, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 165, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 167, because occupancy 0.500 <= existing 0.500 in 2fupA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 490, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 492, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 498, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 500, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 845, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 2fupA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 2fupA # 2fupA.181.55 read from T0506.t2k.many.frag # adding 2fupA to template set # found chain 2fupA in template set T0506 181 :MAAAESEAT 2fupA 44 :LGAKQPLMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24733 # 1r6wA.181.61 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 181 :MAAAESEAT 1r6wA 60 :QSVLLAWVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24734 # 1r5yA.181.240 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 181 :MAAAESEAT 1r5yA 241 :FRVLDFSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24735 # 1y9iA.181.98 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 181 :MAAAESEAT 1y9iA 99 :EILALSIVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24736 # 1uzbA.181.98 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 181 :MAAAESEAT 1uzbA 99 :SRLLLKAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24737 # 1t3tA.181.194 read from T0506.t2k.many.frag # found chain 1t3tA in template set T0506 181 :MAAAESEAT 1t3tA 187 :IDYLQEAFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24738 # 1h8eA.181.461 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 181 :MAAAESEAT 1h8eA 462 :TKFENAFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24739 # 1rqbA.181.342 read from T0506.t2k.many.frag # found chain 1rqbA in template set T0506 181 :MAAAESEAT 1rqbA 332 :MAEVPRVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24740 # 1u24A.181.153 read from T0506.t2k.many.frag # found chain 1u24A in template set T0506 181 :MAAAESEAT 1u24A 154 :LADERHRLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24741 # 1w2wA.181.91 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 181 :MAAAESEAT 1w2wA 92 :KTVLNKRLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24742 2b0tA expands to /projects/compbio/data/pdb/2b0t.pdb.gz 2b0tA:# 2b0tA.181.676 read from T0506.t2k.many.frag # adding 2b0tA to template set # found chain 2b0tA in template set T0506 181 :MAAAESEAT 2b0tA 677 :AATFAPVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24743 # 1hynP.181.307 read from T0506.t2k.many.frag # found chain 1hynP in template set T0506 181 :MAAAESEAT 1hynP 308 :LHSLEGFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24744 # 1gudA.181.180 read from T0506.t2k.many.frag # found chain 1gudA in training set T0506 181 :MAAAESEAT 1gudA 181 :LDVATNVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24745 # 1yviA.181.75 read from T0506.t2k.many.frag # found chain 1yviA in template set T0506 181 :MAAAESEAT 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24746 # 1f5qB.181.129 read from T0506.t2k.many.frag # found chain 1f5qB in template set T0506 181 :MAAAESEAT 1f5qB 130 :LTLEVKSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24747 # 1ra0A.181.104 read from T0506.t2k.many.frag # found chain 1ra0A in training set T0506 181 :MAAAESEAT 1ra0A 101 :KQRAWQTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24748 # 1j31A.181.19 read from T0506.t2k.many.frag # found chain 1j31A in training set T0506 181 :MAAAESEAT 1j31A 20 :YSKAEKLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24749 # 1tx4A.181.116 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 181 :MAAAESEAT 1tx4A 153 :VPATLQVLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24750 # 1vjuA.182.154 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 182 :AAAESEATR 1vjuA 155 :QVAQDLCKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24751 # 1s9rA.182.55 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 182 :AAAESEATR 1s9rA 56 :KEHKQFVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24752 # 1hz4A.182.34 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 182 :AAAESEATR 1hz4A 33 :RLAKLALEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24753 # 1oh0A.182.10 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 182 :AAAESEATR 1oh0A 11 :GLMARYIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24754 # 1n8vA.182.63 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 182 :AAAESEATR 1n8vA 64 :KGAYRVIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24755 # 1lla.182.74 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 182 :AAAESEATR 1lla 75 :EIAKEARTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24756 # 1wuiL.182.241 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 182 :AAAESEATR 1wuiL 260 :ALWKETKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24757 # 1e2kA.182.317 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 182 :AAAESEATR 1e2kA 363 :DLARTFARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24758 # 1t3tA.182.195 read from T0506.t2k.many.frag # found chain 1t3tA in template set T0506 182 :AAAESEATR 1t3tA 188 :DYLQEAFTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24759 # 1aep.182.98 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 182 :AAAESEATR 1aep 99 :NSLQSALTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24760 # 1h8eA.182.462 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 182 :AAAESEATR 1h8eA 463 :KFENAFLSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24761 # 1r6wA.182.62 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 182 :AAAESEATR 1r6wA 61 :SVLLAWVNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24762 # 1tx4A.182.117 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 182 :AAAESEATR 1tx4A 154 :PATLQVLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24763 # 1tqhA.182.70 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 182 :AAAESEATR 1tqhA 71 :QDVMNGYEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24764 # 1r5yA.182.241 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 182 :AAAESEATR 1r5yA 242 :RVLDFSVPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24765 # 1uzbA.182.99 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 182 :AAAESEATR 1uzbA 100 :RLLLKAAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24766 # 1y9iA.182.99 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 182 :AAAESEATR 1y9iA 100 :ILALSIVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24767 # 2b0tA.182.677 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 182 :AAAESEATR 2b0tA 678 :ATFAPVAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24768 # 2fupA.182.56 read from T0506.t2k.many.frag # found chain 2fupA in template set T0506 182 :AAAESEATR 2fupA 45 :GAKQPLMQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24769 # 1nz6A.182.54 read from T0506.t2k.many.frag # found chain 1nz6A in template set T0506 182 :AAAESEATR 1nz6A 52 :KVYRKAVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24770 # 1w2wA.182.92 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 182 :AAAESEATR 1w2wA 93 :TVLNKRLDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24771 # 1gudA.182.181 read from T0506.t2k.many.frag # found chain 1gudA in training set T0506 182 :AAAESEATR 1gudA 182 :DVATNVLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24772 1g5hA expands to /projects/compbio/data/pdb/1g5h.pdb.gz 1g5hA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1g5hA.182.354 read from T0506.t2k.many.frag # adding 1g5hA to template set # found chain 1g5hA in template set T0506 182 :AAAESEATR 1g5hA 371 :QVCQGLLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24773 # 1gkpA.182.190 read from T0506.t2k.many.frag # found chain 1gkpA in training set Warning: unaligning (T0506)R190 (1gkpA)E200 because G (3-10) conformation "forbidden" or filtered. T0506 182 :AAAESEAT 1gkpA 192 :RLQQKLLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=24774 # 1xtpA.182.79 read from T0506.t2k.many.frag # found chain 1xtpA in template set T0506 182 :AAAESEATR 1xtpA 80 :EGSRNFIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24775 # 1f5qB.182.130 read from T0506.t2k.many.frag # found chain 1f5qB in template set T0506 182 :AAAESEATR 1f5qB 131 :TLEVKSLDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24776 # 1yviA.182.76 read from T0506.t2k.many.frag # found chain 1yviA in template set T0506 182 :AAAESEATR 1yviA 77 :AYVHQLKGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24777 # 1dvkA.182.62 read from T0506.t2k.many.frag # found chain 1dvkA in template set T0506 182 :AAAESEATR 1dvkA 141 :KALFPLLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24778 1unlD expands to /projects/compbio/data/pdb/1unl.pdb.gz 1unlD:# 1unlD.182.159 read from T0506.t2k.many.frag # adding 1unlD to template set # found chain 1unlD in template set T0506 182 :AAAESEATR 1unlD 259 :DRCLSVINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24779 # 1ra0A.182.105 read from T0506.t2k.many.frag # found chain 1ra0A in training set T0506 182 :AAAESEATR 1ra0A 102 :QRAWQTLKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24780 # 1s9rA.183.56 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 183 :AAESEATRL 1s9rA 57 :EHKQFVAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24781 # 1vjuA.183.155 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 183 :AAESEATRL 1vjuA 156 :VAQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24782 # 1oh0A.183.11 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 183 :AAESEATRL 1oh0A 12 :LMARYIELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24783 # 1n8vA.183.64 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 183 :AAESEATRL 1n8vA 65 :GAYRVIEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24784 # 1hz4A.183.35 read from T0506.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0506)R190 (1hz4A)E41 because G (3-10) conformation "forbidden" or filtered. T0506 183 :AAESEAT 1hz4A 34 :LAKLALE T0506 191 :L 1hz4A 42 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24786 # 1tx4A.183.118 read from T0506.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0506)R190 (1tx4A)T162 because G (3-10) conformation "forbidden" or filtered. T0506 183 :AAESEAT 1tx4A 155 :ATLQVLQ T0506 191 :L 1tx4A 163 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=24788 # 1uzbA.183.100 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 183 :AAESEATRL 1uzbA 101 :LLLKAAALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24789 # 1lla.183.75 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 183 :AAESEATRL 1lla 76 :IAKEARTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24790 # 1h8eA.183.463 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 183 :AAESEATRL 1h8eA 464 :FENAFLSHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24791 # 2b0tA.183.678 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 183 :AAESEATRL 2b0tA 679 :TFAPVAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24792 # 1t3tA.183.196 read from T0506.t2k.many.frag # found chain 1t3tA in template set T0506 183 :AAESEATRL 1t3tA 189 :YLQEAFTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24793 # 1aep.183.99 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 183 :AAESEATRL 1aep 100 :SLQSALTNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24794 # 1r6wA.183.63 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 183 :AAESEATRL 1r6wA 62 :VLLAWVNNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=24795 # 1tqhA.183.71 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 183 :AAESEATRL 1tqhA 72 :DVMNGYEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24796 # 2fupA.183.57 read from T0506.t2k.many.frag # found chain 2fupA in template set T0506 183 :AAESEATRL 2fupA 46 :AKQPLMQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24797 # 1y9iA.183.100 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 183 :AAESEATRL 1y9iA 101 :LALSIVNVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24798 # 1bea.183.42 read from T0506.t2k.many.frag # found chain 1bea in template set T0506 183 :AAESEATRL 1bea 43 :RCCRELADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24799 # 1w2wA.183.93 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 183 :AAESEATRL 1w2wA 94 :VLNKRLDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24800 # 1wuiL.183.242 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 183 :AAESEATRL 1wuiL 261 :LWKETKAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24801 # 1e2kA.183.318 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 183 :AAESEATRL 1e2kA 364 :LARTFAREM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24802 2b0lA expands to /projects/compbio/data/pdb/2b0l.pdb.gz 2b0lA:Skipped atom 32, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 34, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 36, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 38, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 40, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 42, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 44, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 46, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 48, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 50, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 123, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 125, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 127, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 129, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 131, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 133, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 135, because occupancy 0.200 <= existing 0.800 in 2b0lA Skipped atom 137, because occupancy 0.200 <= existing 0.800 in 2b0lA # 2b0lA.183.13 read from T0506.t2k.many.frag # adding 2b0lA to template set # found chain 2b0lA in template set T0506 183 :AAESEATRL 2b0lA 171 :VVQMAISSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24803 # 1r5yA.183.242 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 183 :AAESEATRL 1r5yA 243 :VLDFSVPML Number of specific fragments extracted= 1 number of extra gaps= 0 total=24804 1vls expands to /projects/compbio/data/pdb/1vls.pdb.gz 1vls:Warning: there is no chain 1vls will retry with 1vlsA # 1vls.183.98 read from T0506.t2k.many.frag # adding 1vls to template set # found chain 1vls in template set T0506 183 :AAESEATRL 1vls 133 :ALAELIQFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24805 1aisB expands to /projects/compbio/data/pdb/1ais.pdb.gz 1aisB:# 1aisB.183.127 read from T0506.t2k.many.frag # adding 1aisB to template set # found chain 1aisB in template set T0506 183 :AAESEATRL 1aisB 1228 :RAIEILDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24806 # 1q52A.183.241 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 183 :AAESEATRL 1q52A 242 :VGLQWAAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24807 # 1xtpA.183.80 read from T0506.t2k.many.frag # found chain 1xtpA in template set T0506 183 :AAESEATRL 1xtpA 81 :GSRNFIASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24808 # 1g5hA.183.355 read from T0506.t2k.many.frag # found chain 1g5hA in template set T0506 183 :AAESEATRL 1g5hA 372 :VCQGLLNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24809 # 1ra0A.183.106 read from T0506.t2k.many.frag # found chain 1ra0A in training set T0506 183 :AAESEATRL 1ra0A 103 :RAWQTLKWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24810 # 1nz6A.183.55 read from T0506.t2k.many.frag # found chain 1nz6A in template set T0506 183 :AAESEATRL 1nz6A 53 :VYRKAVLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24811 # 1xqwA.183.139 read from T0506.t2k.many.frag # found chain 1xqwA in template set T0506 183 :AAESEATRL 1xqwA 140 :EMNRLIDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24812 # 1n8vA.184.65 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 184 :AESEATRLN 1n8vA 66 :AYRVIEHLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24813 # 1oh0A.184.12 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 184 :AESEATRLN 1oh0A 13 :MARYIELVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24814 # 1vjuA.184.156 read from T0506.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0506)N192 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0506 184 :AESEATRL 1vjuA 157 :AQDLCKPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=24815 # 1tx4A.184.119 read from T0506.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0506)N192 (1tx4A)P164 because P (beta_P) conformation "forbidden" or filtered. T0506 184 :AESEATRL 1tx4A 156 :TLQVLQTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=24816 # 1uzbA.184.101 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 184 :AESEATRLN 1uzbA 102 :LLKAAALMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24817 # 1s9rA.184.57 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 184 :AESEATRLN 1s9rA 58 :HKQFVAELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24818 # 1h8eA.184.464 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 184 :AESEATRLN 1h8eA 465 :ENAFLSHVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24819 # 2b0lA.184.14 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 184 :AESEATRLN 2b0lA 172 :VQMAISSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24820 # 1hz4A.184.36 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 184 :AESEATRLN 1hz4A 35 :AKLALEELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24821 # 2b0tA.184.679 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 184 :AESEATRLN 2b0tA 680 :FAPVAEALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24822 # 1y9iA.184.101 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 184 :AESEATRLN 1y9iA 102 :ALSIVNVYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24823 # 1wuiL.184.243 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 184 :AESEATRLN 1wuiL 262 :WKETKAFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24824 # 1lla.184.76 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 184 :AESEATRLN 1lla 77 :AKEARTFVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24825 # 1r5yA.184.243 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 184 :AESEATRLN 1r5yA 244 :LDFSVPMLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24826 1q79A expands to /projects/compbio/data/pdb/1q79.pdb.gz 1q79A:Bad short name: OD for alphabet: pdb_atoms # 1q79A.184.60 read from T0506.t2k.many.frag # adding 1q79A to template set # found chain 1q79A in template set T0506 184 :AESEATRLN 1q79A 61 :RILILGKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24827 # 1vls.184.99 read from T0506.t2k.many.frag # found chain 1vls in template set T0506 184 :AESEATRLN 1vls 134 :LAELIQFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24828 # 2fupA.184.58 read from T0506.t2k.many.frag # found chain 2fupA in template set T0506 184 :AESEATRLN 2fupA 47 :KQPLMQQLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24829 # 1bea.184.43 read from T0506.t2k.many.frag # found chain 1bea in template set T0506 184 :AESEATRLN 1bea 44 :CCRELADIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24830 # 1tqhA.184.72 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 184 :AESEATRLN 1tqhA 73 :VMNGYEFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24831 # 1t3tA.184.197 read from T0506.t2k.many.frag # found chain 1t3tA in template set T0506 184 :AESEATRLN 1t3tA 190 :LQEAFTKLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24832 # 1nz6A.184.56 read from T0506.t2k.many.frag # found chain 1nz6A in template set T0506 184 :AESEATRLN 1nz6A 54 :YRKAVLVVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24833 # 1xqwA.184.140 read from T0506.t2k.many.frag # found chain 1xqwA in template set T0506 184 :AESEATRLN 1xqwA 141 :MNRLIDELP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24834 # 1aep.184.100 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 184 :AESEATRLN 1aep 101 :LQSALTNVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24835 # 1r6wA.184.64 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 184 :AESEATRLN 1r6wA 63 :LLAWVNNWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24836 1or7A expands to /projects/compbio/data/pdb/1or7.pdb.gz 1or7A:Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1018, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1020, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1022, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1024, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1028, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1318, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1320, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1322, because occupancy 0.500 <= existing 0.500 in 1or7A Skipped atom 1324, because occupancy 0.500 <= existing 0.500 in 1or7A # 1or7A.184.133 read from T0506.t2k.many.frag # adding 1or7A to template set # found chain 1or7A in template set T0506 184 :AESEATRLN 1or7A 131 :VFRTIESLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24837 # 1q52A.184.242 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 184 :AESEATRLN 1q52A 243 :GLQWAAEIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24838 # 1aisB.184.128 read from T0506.t2k.many.frag # found chain 1aisB in template set T0506 184 :AESEATRLN 1aisB 1229 :AIEILDEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24839 # 1e2kA.184.319 read from T0506.t2k.many.frag # found chain 1e2kA in training set T0506 184 :AESEATRLN 1e2kA 365 :ARTFAREMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24840 # 1g5hA.184.356 read from T0506.t2k.many.frag # found chain 1g5hA in template set T0506 184 :AESEATRLN 1g5hA 373 :CQGLLNELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24841 # 1w2wA.184.94 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 184 :AESEATRLN 1w2wA 95 :LNKRLDFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24842 # 1tx4A.185.120 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 185 :ESEATRLNA 1tx4A 157 :LQVLQTLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24843 # 1n8vA.185.66 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 185 :ESEATRLNA 1n8vA 67 :YRVIEHLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24844 # 1uzbA.185.102 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 185 :ESEATRLNA 1uzbA 103 :LKAAALMRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24845 # 1oh0A.185.13 read from T0506.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0506)A193 (1oh0A)V22 because G (3-10) conformation "forbidden" or filtered. T0506 185 :ESEATRLN 1oh0A 14 :ARYIELVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=24846 # 2b0lA.185.15 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 185 :ESEATRLNA 2b0lA 173 :QMAISSLSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24847 # 1vjuA.185.157 read from T0506.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0506)N192 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0506 185 :ESEATRL 1vjuA 158 :QDLCKPF T0506 193 :A 1vjuA 166 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=24849 # 1bea.185.44 read from T0506.t2k.many.frag # found chain 1bea in template set T0506 185 :ESEATRLNA 1bea 45 :CRELADIPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24850 # 1s9rA.185.58 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 185 :ESEATRLNA 1s9rA 59 :KQFVAELKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24851 # 1h8eA.185.465 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 185 :ESEATRLNA 1h8eA 466 :NAFLSHVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24852 # 1hz4A.185.37 read from T0506.t2k.many.frag # found chain 1hz4A in training set T0506 185 :ESEATRLNA 1hz4A 36 :KLALEELPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24853 # 2b0tA.185.680 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 185 :ESEATRLNA 2b0tA 681 :APVAEALNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24854 # 1lla.185.77 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 185 :ESEATRLNA 1lla 78 :KEARTFVNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24855 # 1or7A.185.134 read from T0506.t2k.many.frag # found chain 1or7A in template set T0506 185 :ESEATRLNA 1or7A 132 :FRTIESLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24856 # 1q79A.185.61 read from T0506.t2k.many.frag # found chain 1q79A in template set T0506 185 :ESEATRLNA 1q79A 62 :ILILGKLNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24857 # 1y9iA.185.102 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 185 :ESEATRLNA 1y9iA 103 :LSIVNVYGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24858 # 1wuiL.185.244 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 185 :ESEATRLNA 1wuiL 263 :KETKAFVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24859 # 1xqwA.185.141 read from T0506.t2k.many.frag # found chain 1xqwA in template set T0506 185 :ESEATRLNA 1xqwA 142 :NRLIDELPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24860 # 1q52A.185.243 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 185 :ESEATRLNA 1q52A 244 :LQWAAEINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24861 # 2fupA.185.59 read from T0506.t2k.many.frag # found chain 2fupA in template set T0506 185 :ESEATRLNA 2fupA 48 :QPLMQQLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=24862 # 1t3tA.185.198 read from T0506.t2k.many.frag # found chain 1t3tA in template set T0506 185 :ESEATRLNA 1t3tA 191 :QEAFTKLGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24863 # 1r5yA.185.244 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 185 :ESEATRLNA 1r5yA 245 :DFSVPMLPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24864 # 1aep.185.101 read from T0506.t2k.many.frag # found chain 1aep in template set T0506 185 :ESEATRLNA 1aep 102 :QSALTNVGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24865 # 1cy5A.185.56 read from T0506.t2k.many.frag # found chain 1cy5A in training set T0506 185 :ESEATRLNA 1cy5A 57 :IKMILKKDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24866 # 1r6wA.185.65 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 185 :ESEATRLNA 1r6wA 64 :LAWVNNWLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24867 # 1tqhA.185.73 read from T0506.t2k.many.frag # found chain 1tqhA in training set T0506 185 :ESEATRLNA 1tqhA 74 :MNGYEFLKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24868 # 1vls.185.100 read from T0506.t2k.many.frag # found chain 1vls in template set T0506 185 :ESEATRLNA 1vls 135 :AELIQFLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24869 2amlA expands to /projects/compbio/data/pdb/2aml.pdb.gz 2amlA:Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 46, because occupancy 0.500 <= existing 0.500 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 985, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1499, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1501, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1507, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1509, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1511, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1994, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1996, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 1998, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2000, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2002, because occupancy 0.500 <= existing 0.500 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2193, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2195, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2307, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2309, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2320, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2322, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2324, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2326, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2400, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2402, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2404, because occupancy 0.500 <= existing 0.500 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2595, because occupancy 0.500 <= existing 0.500 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2597, because occupancy 0.500 <= existing 0.500 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2599, because occupancy 0.400 <= existing 0.400 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2601, because occupancy 0.500 <= existing 0.500 in 2amlA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2869, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2871, because occupancy 0.500 <= existing 0.500 in 2amlA Skipped atom 2873, because occupancy 0.500 <= existing 0.500 in 2amlA # 2amlA.185.24 read from T0506.t2k.many.frag # adding 2amlA to template set # found chain 2amlA in template set T0506 185 :ESEATRLNA 2amlA 13 :EEMCRVILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24870 # 1kaeA.185.36 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 185 :ESEATRLNA 1kaeA 37 :NDILDNVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24871 # 1aisB.185.129 read from T0506.t2k.many.frag # found chain 1aisB in template set T0506 185 :ESEATRLNA 1aisB 1230 :IEILDEAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24872 # 1w2wA.185.95 read from T0506.t2k.many.frag # found chain 1w2wA in training set T0506 185 :ESEATRLNA 1w2wA 96 :NKRLDFLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24873 # 1tx4A.186.121 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 186 :SEATRLNAI 1tx4A 158 :QVLQTLPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24874 # 1uzbA.186.103 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 186 :SEATRLNAI 1uzbA 104 :KAAALMRRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24875 # 1n8vA.186.67 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)I194 (1n8vA)N76 because G (3-10) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1n8vA 68 :RVIEHLIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24876 # 2b0lA.186.16 read from T0506.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0506)N192 (2b0lA)S180 because P (beta_P) conformation "forbidden" or filtered. T0506 186 :SEATRL 2b0lA 174 :MAISSL T0506 193 :AI 2b0lA 181 :YS Number of specific fragments extracted= 2 number of extra gaps= 1 total=24878 # 1oh0A.186.14 read from T0506.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0506)I194 (1oh0A)G23 because L (left) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1oh0A 15 :RYIELVDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=24879 # 1lla.186.78 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 186 :SEATRLNAI 1lla 79 :EARTFVNEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24880 # 1vjuA.186.158 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 186 :SEATRLNAI 1vjuA 159 :DLCKPFGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24881 # 1or7A.186.135 read from T0506.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0506)N192 (1or7A)P139 because P (beta_P) conformation "forbidden" or filtered. T0506 186 :SEATRL 1or7A 133 :RTIESL T0506 193 :AI 1or7A 140 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=24883 # 1h8eA.186.466 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 186 :SEATRLNAI 1h8eA 467 :AFLSHVISQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24884 # 1wuiL.186.245 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 186 :SEATRLNAI 1wuiL 264 :ETKAFVDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24885 # 2b0tA.186.681 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 186 :SEATRLNAI 2b0tA 682 :PVAEALNTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24886 # 1y9iA.186.103 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 186 :SEATRLNAI 1y9iA 104 :SIVNVYGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24887 # 1s9rA.186.59 read from T0506.t2k.many.frag # found chain 1s9rA in training set T0506 186 :SEATRLNAI 1s9rA 60 :QFVAELKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24888 # 1q79A.186.62 read from T0506.t2k.many.frag # found chain 1q79A in template set T0506 186 :SEATRLNAI 1q79A 63 :LILGKLNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24889 # 1bea.186.45 read from T0506.t2k.many.frag # found chain 1bea in template set T0506 186 :SEATRLNAI 1bea 46 :RELADIPAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24890 # 1xqwA.186.142 read from T0506.t2k.many.frag # found chain 1xqwA in template set T0506 186 :SEATRLNAI 1xqwA 143 :RLIDELPAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24891 # 1hz4A.186.38 read from T0506.t2k.many.frag # found chain 1hz4A in training set Warning: unaligning (T0506)R190 (1hz4A)E41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N192 (1hz4A)P43 because P (beta_P) conformation "forbidden" or filtered. T0506 186 :SEAT 1hz4A 37 :LALE T0506 191 :L 1hz4A 42 :L T0506 193 :AI 1hz4A 44 :PG Number of specific fragments extracted= 3 number of extra gaps= 2 total=24894 # 1q52A.186.244 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 186 :SEATRLNAI 1q52A 245 :QWAAEINAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24895 # 2fupA.186.60 read from T0506.t2k.many.frag # found chain 2fupA in template set T0506 186 :SEATRLNAI 2fupA 49 :PLMQQLERN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24896 # 1lb3A.186.100 read from T0506.t2k.many.frag # found chain 1lb3A in training set T0506 186 :SEATRLNAI 1lb3A 105 :AMEKNLNQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24897 # 1r5yA.186.245 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 186 :SEATRLNAI 1r5yA 246 :FSVPMLPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24898 # 1vls.186.101 read from T0506.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0506)I194 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1vls 136 :ELIQFLDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24899 # 1xkpA.186.129 read from T0506.t2k.many.frag # found chain 1xkpA in training set T0506 186 :SEATRLNAI 1xkpA 161 :QALVSMAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24900 # 2amlA.186.25 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 186 :SEATRLNAI 2amlA 14 :EMCRVILAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24901 # 1kaeA.186.37 read from T0506.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)I194 (1kaeA)R46 because G (3-10) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1kaeA 38 :DILDNVKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24902 1rcwA expands to /projects/compbio/data/pdb/1rcw.pdb.gz 1rcwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1rcwA.186.186 read from T0506.t2k.many.frag # adding 1rcwA to template set # found chain 1rcwA in template set Warning: unaligning (T0506)I194 (1rcwA)D195 because L (left) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1rcwA 187 :ALIEMLLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24903 1z72A expands to /projects/compbio/data/pdb/1z72.pdb.gz 1z72A:Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 13, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 59, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 61, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 63, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 159, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 165, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 167, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 169, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 171, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 196, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 198, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 380, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 382, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 384, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 386, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 388, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 398, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 400, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 410, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 412, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 414, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 431, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 433, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 435, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 437, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 439, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 441, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 443, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 445, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 447, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1z72A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 667, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 673, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 675, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 677, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1067, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1069, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1073, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1079, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1081, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1083, because occupancy 0.500 <= existing 0.500 in 1z72A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1394, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1396, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1398, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1407, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1409, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1411, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1413, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1415, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1417, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1419, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1421, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1423, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1432, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1436, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1442, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1444, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1446, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1448, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1450, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1452, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1454, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1511, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1723, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1725, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1727, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1743, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1745, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1747, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1749, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1751, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1753, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1755, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1757, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1759, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1761, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1771, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1773, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1775, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1777, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1779, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1781, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1783, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1785, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1787, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1789, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1791, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1793, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1804, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1806, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1810, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1z72A # 1z72A.186.85 read from T0506.t2k.many.frag # adding 1z72A to template set # found chain 1z72A in template set T0506 186 :SEATRLNAI 1z72A 83 :KQLGFLEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24904 # 1cy5A.186.57 read from T0506.t2k.many.frag # found chain 1cy5A in training set T0506 186 :SEATRLNAI 1cy5A 58 :KMILKKDND Number of specific fragments extracted= 1 number of extra gaps= 0 total=24905 1lki expands to /projects/compbio/data/pdb/1lki.pdb.gz 1lki:Warning: there is no chain 1lki will retry with 1lkiA # 1lki.186.116 read from T0506.t2k.many.frag # adding 1lki to template set # found chain 1lki in template set T0506 186 :SEATRLNAI 1lki 117 :ATIDVMRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24906 1e7uA expands to /projects/compbio/data/pdb/1e7u.pdb.gz 1e7uA:# 1e7uA.186.928 read from T0506.t2k.many.frag # adding 1e7uA to template set # found chain 1e7uA in template set T0506 186 :SEATRLNAI 1e7uA 1070 :DQIEVCRDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24907 # 1n8vA.187.68 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)K195 (1n8vA)E77 because D (zeta) conformation "forbidden" or filtered. T0506 187 :EATRLNAI 1n8vA 69 :VIEHLIKN Number of specific fragments extracted= 1 number of extra gaps= 1 total=24908 # 1uzbA.187.104 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 187 :EATRLNAIK 1uzbA 105 :AAALMRRRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24909 # 1lla.187.79 read from T0506.t2k.many.frag # found chain 1lla in template set Warning: unaligning (T0506)R190 (1lla)F83 because G (3-10) conformation "forbidden" or filtered. T0506 187 :EAT 1lla 80 :ART T0506 191 :LNAIK 1lla 84 :VNEGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24911 # 1tx4A.187.122 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 187 :EATRLNAIK 1tx4A 159 :VLQTLPEEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=24912 # 2b0lA.187.17 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 187 :EATRLNAIK 2b0lA 175 :AISSLSYSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24913 # 1or7A.187.136 read from T0506.t2k.many.frag # found chain 1or7A in template set Warning: unaligning (T0506)R190 (1or7A)S137 because G (3-10) conformation "forbidden" or filtered. T0506 187 :EAT 1or7A 134 :TIE T0506 191 :LNAIK 1or7A 138 :LPEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=24915 # 1wuiL.187.246 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 187 :EATRLNAIK 1wuiL 265 :TKAFVDEVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24916 # 2b0tA.187.682 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 187 :EATRLNAIK 2b0tA 683 :VAEALNTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24917 # 1h8eA.187.467 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 187 :EATRLNAIK 1h8eA 468 :FLSHVISQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=24918 # 1oh0A.187.15 read from T0506.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0506)I194 (1oh0A)G23 because L (left) conformation "forbidden" or filtered. T0506 187 :EATRLNA 1oh0A 16 :YIELVDV T0506 195 :K 1oh0A 24 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=24920 # 1q79A.187.63 read from T0506.t2k.many.frag # found chain 1q79A in template set T0506 187 :EATRLNAIK 1q79A 64 :ILGKLNNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=24921 # 1xkpA.187.130 read from T0506.t2k.many.frag # found chain 1xkpA in training set T0506 187 :EATRLNAIK 1xkpA 162 :ALVSMAEEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24922 # 1vjuA.187.159 read from T0506.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0506)N192 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0506 187 :EATRL 1vjuA 160 :LCKPF T0506 193 :AIK 1vjuA 166 :ADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=24924 # 1kaeA.187.38 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 187 :EATRLNAIK 1kaeA 39 :ILDNVKARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24925 # 2amlA.187.26 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 187 :EATRLNAIK 2amlA 15 :MCRVILADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24926 # 1lb3A.187.101 read from T0506.t2k.many.frag # found chain 1lb3A in training set T0506 187 :EATRLNAIK 1lb3A 106 :MEKNLNQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24927 # 1y9iA.187.104 read from T0506.t2k.many.frag # found chain 1y9iA in training set Warning: unaligning (T0506)N192 (1y9iA)G110 because S (epsilon) conformation "forbidden" or filtered. T0506 187 :EATRL 1y9iA 105 :IVNVY T0506 193 :AIK 1y9iA 111 :SIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=24929 # 1rcwA.187.187 read from T0506.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0506)A193 (1rcwA)K194 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)I194 (1rcwA)D195 because L (left) conformation "forbidden" or filtered. T0506 187 :EATRLN 1rcwA 188 :LIEMLL T0506 195 :K 1rcwA 196 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=24931 # 1q52A.187.245 read from T0506.t2k.many.frag # found chain 1q52A in training set T0506 187 :EATRLNAIK 1q52A 246 :WAAEINAKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=24932 # 1i2tA.187.11 read from T0506.t2k.many.frag # found chain 1i2tA in training set T0506 187 :EATRLNAIK 1i2tA 1020 :RVQAMQPAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24933 # 1vls.187.102 read from T0506.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0506)I194 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. T0506 187 :EATRLNA 1vls 137 :LIQFLDN T0506 195 :K 1vls 145 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=24935 # 1s9rA.187.60 read from T0506.t2k.many.frag # found chain 1s9rA in training set Warning: unaligning (T0506)I194 (1s9rA)N68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K195 (1s9rA)D69 because L (left) conformation "forbidden" or filtered. T0506 187 :EATRLNA 1s9rA 61 :FVAELKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=24936 # 1xqwA.187.143 read from T0506.t2k.many.frag # found chain 1xqwA in template set T0506 187 :EATRLNAIK 1xqwA 144 :LIDELPAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24937 # 1z72A.187.86 read from T0506.t2k.many.frag # found chain 1z72A in template set T0506 187 :EATRLNAIK 1z72A 84 :QLGFLEADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24938 # 1bea.187.46 read from T0506.t2k.many.frag # found chain 1bea in template set Warning: unaligning (T0506)N192 (1bea)P52 because P (beta_P) conformation "forbidden" or filtered. T0506 187 :EATRL 1bea 47 :ELADI T0506 193 :AIK 1bea 53 :AYC Number of specific fragments extracted= 2 number of extra gaps= 1 total=24940 # 2fupA.187.61 read from T0506.t2k.many.frag # found chain 2fupA in template set T0506 187 :EATRLNAIK 2fupA 50 :LMQQLERNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=24941 1io1A expands to /projects/compbio/data/pdb/1io1.pdb.gz 1io1A:# 1io1A.187.27 read from T0506.t2k.many.frag # adding 1io1A to template set # found chain 1io1A in template set T0506 187 :EATRLNAIK 1io1A 80 :ALNEINNNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24942 # 1e7uA.187.929 read from T0506.t2k.many.frag # found chain 1e7uA in template set Warning: unaligning (T0506)K195 (1e7uA)G1079 because S (epsilon) conformation "forbidden" or filtered. T0506 187 :EATRLNAI 1e7uA 1071 :QIEVCRDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=24943 # 1r5yA.187.246 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 187 :EATRLNAIK 1r5yA 247 :SVPMLPDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24944 # 2f6hX.187.138 read from T0506.t2k.many.frag # found chain 2f6hX in template set T0506 187 :EATRLNAIK 2f6hX 160 :LVTELKDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24945 # 1lla.188.80 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 188 :ATRLNAIKG 1lla 81 :RTFVNEGLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=24946 # 1uzbA.188.105 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 188 :ATRLNAIKG 1uzbA 106 :AALMRRRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24947 # 1n8vA.188.69 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)K195 (1n8vA)E77 because D (zeta) conformation "forbidden" or filtered. T0506 188 :ATRLNAI 1n8vA 70 :IEHLIKN T0506 196 :G 1n8vA 78 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=24949 # 1tx4A.188.123 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 188 :ATRLNAIKG 1tx4A 160 :LQTLPEENY Number of specific fragments extracted= 1 number of extra gaps= 0 total=24950 # 2b0lA.188.18 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 188 :ATRLNAIKG 2b0lA 176 :ISSLSYSEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24951 # 1or7A.188.137 read from T0506.t2k.many.frag # found chain 1or7A in template set T0506 188 :ATRLNAIKG 1or7A 135 :IESLPEDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24952 # 1wuiL.188.247 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 188 :ATRLNAIKG 1wuiL 266 :KAFVDEVYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24953 # 1h8eA.188.468 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 188 :ATRLNAIKG 1h8eA 469 :LSHVISQHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24954 # 1kaeA.188.39 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 188 :ATRLNAIKG 1kaeA 40 :LDNVKARGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24955 # 2amlA.188.27 read from T0506.t2k.many.frag # found chain 2amlA in template set Warning: unaligning (T0506)I194 (2amlA)D22 because G (3-10) conformation "forbidden" or filtered. T0506 188 :ATRLNA 2amlA 16 :CRVILA T0506 195 :KG 2amlA 23 :FQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24957 # 2b0tA.188.683 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 188 :ATRLNAIKG 2b0tA 684 :AEALNTGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24958 # 1xkpA.188.131 read from T0506.t2k.many.frag # found chain 1xkpA in training set Warning: unaligning (T0506)K195 (1xkpA)Q170 because G (3-10) conformation "forbidden" or filtered. T0506 188 :ATRLNAI 1xkpA 163 :LVSMAEE T0506 196 :G 1xkpA 171 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=24960 # 1vjuA.188.160 read from T0506.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0506)N192 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0506 188 :ATRL 1vjuA 161 :CKPF T0506 193 :AIKG 1vjuA 166 :ADVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=24962 # 1lb3A.188.102 read from T0506.t2k.many.frag # found chain 1lb3A in training set T0506 188 :ATRLNAIKG 1lb3A 107 :EKNLNQALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=24963 # 1q79A.188.64 read from T0506.t2k.many.frag # found chain 1q79A in template set T0506 188 :ATRLNAIKG 1q79A 65 :LGKLNNLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=24964 # 1oh0A.188.16 read from T0506.t2k.many.frag # found chain 1oh0A in training set Warning: unaligning (T0506)I194 (1oh0A)G23 because L (left) conformation "forbidden" or filtered. T0506 188 :ATRLNA 1oh0A 17 :IELVDV T0506 195 :KG 1oh0A 24 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=24966 # 1y9iA.188.105 read from T0506.t2k.many.frag # found chain 1y9iA in training set Warning: unaligning (T0506)N192 (1y9iA)G110 because S (epsilon) conformation "forbidden" or filtered. T0506 188 :ATRL 1y9iA 106 :VNVY T0506 193 :AIKG 1y9iA 111 :SIGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=24968 # 1i2tA.188.12 read from T0506.t2k.many.frag # found chain 1i2tA in training set T0506 188 :ATRLNAIKG 1i2tA 1021 :VQAMQPAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24969 # 1z72A.188.87 read from T0506.t2k.many.frag # found chain 1z72A in template set T0506 188 :ATRLNAIKG 1z72A 85 :LGFLEADED Number of specific fragments extracted= 1 number of extra gaps= 0 total=24970 # 1vls.188.103 read from T0506.t2k.many.frag # found chain 1vls in template set Warning: unaligning (T0506)I194 (1vls)G144 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K195 (1vls)N145 because N (gamma') conformation "forbidden" or filtered. T0506 188 :ATRLNA 1vls 138 :IQFLDN T0506 196 :G 1vls 146 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=24972 # 1io1A.188.28 read from T0506.t2k.many.frag # found chain 1io1A in template set T0506 188 :ATRLNAIKG 1io1A 81 :LNEINNNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=24973 # 2f6hX.188.139 read from T0506.t2k.many.frag # found chain 2f6hX in template set T0506 188 :ATRLNAIKG 2f6hX 161 :VTELKDDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24974 # 2fupA.188.62 read from T0506.t2k.many.frag # found chain 2fupA in template set T0506 188 :ATRLNAIKG 2fupA 51 :MQQLERNGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=24975 # 1rcwA.188.188 read from T0506.t2k.many.frag # found chain 1rcwA in template set Warning: unaligning (T0506)A193 (1rcwA)K194 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)I194 (1rcwA)D195 because L (left) conformation "forbidden" or filtered. T0506 188 :ATRLN 1rcwA 189 :IEMLL T0506 195 :KG 1rcwA 196 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24977 # 1h16A.188.482 read from T0506.t2k.many.frag # found chain 1h16A in training set T0506 188 :ATRLNAIKG 1h16A 483 :MDWLAKQYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=24978 # 1fp3A.188.11 read from T0506.t2k.many.frag # found chain 1fp3A in template set T0506 188 :ATRLNAIKG 1fp3A 12 :KERVGQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=24979 # 1e7uA.188.930 read from T0506.t2k.many.frag # found chain 1e7uA in template set Warning: unaligning (T0506)G196 (1e7uA)W1080 because G (3-10) conformation "forbidden" or filtered. T0506 188 :ATRLNAIK 1e7uA 1072 :IEVCRDKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=24980 # 1r5yA.188.247 read from T0506.t2k.many.frag # found chain 1r5yA in training set T0506 188 :ATRLNAIKG 1r5yA 248 :VPMLPDDKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24981 # 1bgc.188.20 read from T0506.t2k.many.frag # found chain 1bgc in training set T0506 188 :ATRLNAIKG 1bgc 22 :VRKIQADGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24982 # 1bea.188.47 read from T0506.t2k.many.frag # found chain 1bea in template set Warning: unaligning (T0506)N192 (1bea)P52 because P (beta_P) conformation "forbidden" or filtered. T0506 188 :ATRL 1bea 48 :LADI T0506 193 :AIKG 1bea 53 :AYCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=24984 # 1lla.189.81 read from T0506.t2k.many.frag # found chain 1lla in template set Warning: unaligning (T0506)R190 (1lla)F83 because G (3-10) conformation "forbidden" or filtered. T0506 189 :T 1lla 82 :T T0506 191 :LNAIKGE 1lla 84 :VNEGLFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24986 # 1uzbA.189.106 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 189 :TRLNAIKGE 1uzbA 107 :ALMRRRKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24987 # 1n8vA.189.70 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 189 :TRLNAIKGE 1n8vA 71 :EHLIKNEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24988 # 1wuiL.189.248 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 189 :TRLNAIKGE 1wuiL 267 :AFVDEVYIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=24989 # 2b0lA.189.19 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 189 :TRLNAIKGE 2b0lA 177 :SSLSYSELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=24990 # 1vjuA.189.161 read from T0506.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0506)N192 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0506 189 :TRL 1vjuA 162 :KPF T0506 193 :AIKGE 1vjuA 166 :ADVYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=24992 # 1tx4A.189.124 read from T0506.t2k.many.frag # found chain 1tx4A in training set Warning: unaligning (T0506)N192 (1tx4A)P164 because P (beta_P) conformation "forbidden" or filtered. T0506 189 :TRL 1tx4A 161 :QTL T0506 193 :AIKGE 1tx4A 165 :EENYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=24994 # 1or7A.189.138 read from T0506.t2k.many.frag # found chain 1or7A in template set T0506 189 :TRLNAIKGE 1or7A 136 :ESLPEDLRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=24995 # 2amlA.189.28 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 189 :TRLNAIKGE 2amlA 17 :RVILADFQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=24996 # 1kaeA.189.40 read from T0506.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)K195 (1kaeA)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 189 :TRLNAI 1kaeA 41 :DNVKAR T0506 196 :GE 1kaeA 48 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=24998 # 1h8eA.189.469 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 189 :TRLNAIKGE 1h8eA 470 :SHVISQHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=24999 # 1xkpA.189.132 read from T0506.t2k.many.frag # found chain 1xkpA in training set T0506 189 :TRLNAIKGE 1xkpA 164 :VSMAEEQGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25000 # 2b0tA.189.684 read from T0506.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0506)I194 (2b0tA)G690 because G (3-10) conformation "forbidden" or filtered. T0506 189 :TRLNA 2b0tA 685 :EALNT T0506 195 :KGE 2b0tA 691 :AAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25002 # 1lb3A.189.103 read from T0506.t2k.many.frag # found chain 1lb3A in training set T0506 189 :TRLNAIKGE 1lb3A 108 :KNLNQALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25003 # 1q79A.189.65 read from T0506.t2k.many.frag # found chain 1q79A in template set T0506 189 :TRLNAIKGE 1q79A 66 :GKLNNLVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25004 # 1y9iA.189.106 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 189 :TRLNAIKGE 1y9iA 107 :NVYGSIGFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25005 # 1z72A.189.88 read from T0506.t2k.many.frag # found chain 1z72A in template set T0506 189 :TRLNAIKGE 1z72A 86 :GFLEADEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25006 3ygsP expands to /projects/compbio/data/pdb/3ygs.pdb.gz 3ygsP:# 3ygsP.189.63 read from T0506.t2k.many.frag # adding 3ygsP to template set # found chain 3ygsP in template set Warning: unaligning (T0506)R190 (3ygsP)T65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N192 (3ygsP)G67 because S (epsilon) conformation "forbidden" or filtered. T0506 189 :T 3ygsP 64 :E T0506 191 :L 3ygsP 66 :R T0506 193 :AIKGE 3ygsP 68 :SQALP Number of specific fragments extracted= 3 number of extra gaps= 2 total=25009 # 1i2tA.189.13 read from T0506.t2k.many.frag # found chain 1i2tA in training set T0506 189 :TRLNAIKGE 1i2tA 1022 :QAMQPAFAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25010 # 1io1A.189.29 read from T0506.t2k.many.frag # found chain 1io1A in template set T0506 189 :TRLNAIKGE 1io1A 82 :NEINNNLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25011 2ao9A expands to /projects/compbio/data/pdb/2ao9.pdb.gz 2ao9A:# 2ao9A.189.21 read from T0506.t2k.many.frag # adding 2ao9A to template set # found chain 2ao9A in template set Warning: unaligning (T0506)N192 (2ao9A)T25 because P (beta_P) conformation "forbidden" or filtered. T0506 189 :TRL 2ao9A 22 :QKL T0506 193 :AIKGE 2ao9A 26 :AKQIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25013 # 1vls.189.104 read from T0506.t2k.many.frag # found chain 1vls in template set T0506 189 :TRLNAIKGE 1vls 139 :QFLDNGNMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25014 # 1oh0A.189.17 read from T0506.t2k.many.frag # found chain 1oh0A in training set T0506 189 :TRLNAIKGE 1oh0A 18 :ELVDVGDIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25015 1z5oA expands to /projects/compbio/data/pdb/1z5o.pdb.gz 1z5oA:# 1z5oA.189.221 read from T0506.t2k.many.frag # adding 1z5oA to template set # found chain 1z5oA in template set T0506 189 :TRLNAIKGE 1z5oA 212 :AVAAKQSSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25016 # 2c3nA.189.106 read from T0506.t2k.many.frag # found chain 2c3nA in template set T0506 189 :TRLNAIKGE 2c3nA 100 :AWQHTTLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25017 # 1cy5A.189.60 read from T0506.t2k.many.frag # found chain 1cy5A in training set T0506 189 :TRLNAIKGE 1cy5A 61 :LKKDNDSYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25018 1h6gA expands to /projects/compbio/data/pdb/1h6g.pdb.gz 1h6gA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1h6gA.189.204 read from T0506.t2k.many.frag # adding 1h6gA to template set # found chain 1h6gA in template set T0506 189 :TRLNAIKGE 1h6gA 581 :NTVMPRFTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25019 # 1h16A.189.483 read from T0506.t2k.many.frag # found chain 1h16A in training set T0506 189 :TRLNAIKGE 1h16A 484 :DWLAKQYIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25020 # 1bgc.189.21 read from T0506.t2k.many.frag # found chain 1bgc in training set T0506 189 :TRLNAIKGE 1bgc 23 :RKIQADGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25021 1t06A expands to /projects/compbio/data/pdb/1t06.pdb.gz 1t06A:# 1t06A.189.160 read from T0506.t2k.many.frag # adding 1t06A to template set # found chain 1t06A in template set Warning: unaligning (T0506)R190 (1t06A)H162 because G (3-10) conformation "forbidden" or filtered. T0506 189 :T 1t06A 161 :H T0506 191 :LNAIKGE 1t06A 163 :SPERTKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25023 # 1vjuA.190.162 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 190 :RLNAIKGEA 1vjuA 163 :PFGADVYAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25024 # 1wuiL.190.249 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 190 :RLNAIKGEA 1wuiL 268 :FVDEVYIPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25025 # 1lla.190.82 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 190 :RLNAIKGEA 1lla 83 :FVNEGLFAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25026 # 1uzbA.190.107 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 190 :RLNAIKGEA 1uzbA 108 :LMRRRKREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25027 # 2b0lA.190.20 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 190 :RLNAIKGEA 2b0lA 178 :SLSYSELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25028 # 1n8vA.190.71 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 190 :RLNAIKGEA 1n8vA 72 :HLIKNEIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25029 # 2amlA.190.29 read from T0506.t2k.many.frag # found chain 2amlA in template set Warning: unaligning (T0506)I194 (2amlA)D22 because G (3-10) conformation "forbidden" or filtered. T0506 190 :RLNA 2amlA 18 :VILA T0506 195 :KGEA 2amlA 23 :FQTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25031 # 1tx4A.190.125 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 190 :RLNAIKGEA 1tx4A 162 :TLPEENYQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25032 # 1or7A.190.139 read from T0506.t2k.many.frag # found chain 1or7A in template set T0506 190 :RLNAIKGEA 1or7A 137 :SLPEDLRMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25033 # 1kaeA.190.41 read from T0506.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)K195 (1kaeA)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 190 :RLNAI 1kaeA 42 :NVKAR T0506 196 :GEA 1kaeA 48 :DEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25035 # 3ygsP.190.64 read from T0506.t2k.many.frag # found chain 3ygsP in template set Warning: unaligning (T0506)I194 (3ygsP)Q69 because G (3-10) conformation "forbidden" or filtered. T0506 190 :RLNA 3ygsP 65 :TRGS T0506 195 :KGEA 3ygsP 70 :ALPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25037 # 2ao9A.190.22 read from T0506.t2k.many.frag # found chain 2ao9A in template set T0506 190 :RLNAIKGEA 2ao9A 23 :KLTAKQIQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25038 # 1y9iA.190.107 read from T0506.t2k.many.frag # found chain 1y9iA in training set Warning: unaligning (T0506)N192 (1y9iA)G110 because S (epsilon) conformation "forbidden" or filtered. T0506 190 :RL 1y9iA 108 :VY T0506 193 :AIKGEA 1y9iA 111 :SIGFTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25040 # 2b0tA.190.685 read from T0506.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0506)I194 (2b0tA)G690 because G (3-10) conformation "forbidden" or filtered. T0506 190 :RLNA 2b0tA 686 :ALNT T0506 195 :KGEA 2b0tA 691 :AADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25042 # 1h8eA.190.470 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 190 :RLNAIKGEA 1h8eA 471 :HVISQHQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25043 # 2c3nA.190.107 read from T0506.t2k.many.frag # found chain 2c3nA in template set T0506 190 :RLNAIKGEA 2c3nA 101 :WQHTTLRRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25044 # 1h6gA.190.205 read from T0506.t2k.many.frag # found chain 1h6gA in template set T0506 190 :RLNAIKGEA 1h6gA 582 :TVMPRFTEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25045 # 1xkpA.190.133 read from T0506.t2k.many.frag # found chain 1xkpA in training set T0506 190 :RLNAIKGEA 1xkpA 165 :SMAEEQGET Number of specific fragments extracted= 1 number of extra gaps= 0 total=25046 1qgoA expands to /projects/compbio/data/pdb/1qgo.pdb.gz 1qgoA:Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 851, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 929, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 931, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 933, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1248, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1250, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1252, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1464, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1466, because occupancy 0.500 <= existing 0.500 in 1qgoA Skipped atom 1468, because occupancy 0.500 <= existing 0.500 in 1qgoA # 1qgoA.190.83 read from T0506.t2k.many.frag # adding 1qgoA to template set # found chain 1qgoA in template set T0506 190 :RLNAIKGEA 1qgoA 84 :IINGDEYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25047 # 1io1A.190.30 read from T0506.t2k.many.frag # found chain 1io1A in template set T0506 190 :RLNAIKGEA 1io1A 83 :EINNNLQRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25048 # 1lb3A.190.104 read from T0506.t2k.many.frag # found chain 1lb3A in training set T0506 190 :RLNAIKGEA 1lb3A 109 :NLNQALLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25049 # 1mpgA.190.172 read from T0506.t2k.many.frag # found chain 1mpgA in training set Warning: unaligning (T0506)N192 (1mpgA)P175 because P (beta_P) conformation "forbidden" or filtered. T0506 190 :RL 1mpgA 173 :GM T0506 193 :AIKGEA 1mpgA 176 :LKRAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25051 # 1q79A.190.66 read from T0506.t2k.many.frag # found chain 1q79A in template set T0506 190 :RLNAIKGEA 1q79A 67 :KLNNLVKEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25052 # 1z72A.190.89 read from T0506.t2k.many.frag # found chain 1z72A in template set T0506 190 :RLNAIKGEA 1z72A 87 :FLEADEDGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25053 # 1xewY.190.96 read from T0506.t2k.many.frag # found chain 1xewY in template set T0506 190 :RLNAIKGEA 1xewY 1102 :HLDDANVKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25054 # 1z5oA.190.222 read from T0506.t2k.many.frag # found chain 1z5oA in template set T0506 190 :RLNAIKGEA 1z5oA 213 :VAAKQSSLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25055 # 1bgc.190.22 read from T0506.t2k.many.frag # found chain 1bgc in training set T0506 190 :RLNAIKGEA 1bgc 24 :KIQADGAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25056 # 1cy5A.190.61 read from T0506.t2k.many.frag # found chain 1cy5A in training set T0506 190 :RLNAIKGEA 1cy5A 62 :KKDNDSYVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25057 # 1i2tA.190.14 read from T0506.t2k.many.frag # found chain 1i2tA in training set Warning: unaligning (T0506)K195 (1i2tA)F1028 because G (3-10) conformation "forbidden" or filtered. T0506 190 :RLNAI 1i2tA 1023 :AMQPA T0506 196 :GEA 1i2tA 1029 :ASK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25059 # 1yleA.190.229 read from T0506.t2k.many.frag # found chain 1yleA in training set T0506 190 :RLNAIKGEA 1yleA 228 :QVHPRAQIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25060 # 1vjuA.191.163 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 191 :LNAIKGEAS 1vjuA 164 :FGADVYARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25061 # 1wuiL.191.250 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 191 :LNAIKGEAS 1wuiL 269 :VDEVYIPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25062 # 2b0lA.191.21 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 191 :LNAIKGEAS 2b0lA 179 :LSYSELEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25063 # 1uzbA.191.108 read from T0506.t2k.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)I194 (1uzbA)R112 because G (3-10) conformation "forbidden" or filtered. T0506 191 :LNA 1uzbA 109 :MRR T0506 195 :KGEAS 1uzbA 113 :KRELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25065 # 2amlA.191.30 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 191 :LNAIKGEAS 2amlA 19 :ILADFQTNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25066 # 1lla.191.83 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 191 :LNAIKGEAS 1lla 84 :VNEGLFAFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25067 # 1n8vA.191.72 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)I194 (1n8vA)N76 because G (3-10) conformation "forbidden" or filtered. T0506 191 :LNA 1n8vA 73 :LIK T0506 195 :KGEAS 1n8vA 77 :EIEIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=25069 # 1qgoA.191.84 read from T0506.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0506)A193 (1qgoA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0506 191 :LN 1qgoA 85 :IN T0506 194 :IKGEAS 1qgoA 88 :DEYEKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25071 # 1kaeA.191.42 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 191 :LNAIKGEAS 1kaeA 43 :VKARGDEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25072 # 3ygsP.191.65 read from T0506.t2k.many.frag # found chain 3ygsP in template set Warning: unaligning (T0506)N192 (3ygsP)G67 because S (epsilon) conformation "forbidden" or filtered. T0506 191 :L 3ygsP 66 :R T0506 193 :AIKGEAS 3ygsP 68 :SQALPLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25074 1svmA expands to /projects/compbio/data/pdb/1svm.pdb.gz 1svmA:# 1svmA.191.316 read from T0506.t2k.many.frag # adding 1svmA to template set # found chain 1svmA in template set Warning: unaligning (T0506)K195 (1svmA)S571 because P (beta_P) conformation "forbidden" or filtered. T0506 191 :LNAI 1svmA 567 :RIIQ T0506 196 :GEAS 1svmA 572 :GIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25076 # 2ao9A.191.23 read from T0506.t2k.many.frag # found chain 2ao9A in template set Warning: unaligning (T0506)N192 (2ao9A)T25 because P (beta_P) conformation "forbidden" or filtered. T0506 191 :L 2ao9A 24 :L T0506 193 :AIKGEAS 2ao9A 26 :AKQIQAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25078 # 1or7A.191.140 read from T0506.t2k.many.frag # found chain 1or7A in template set T0506 191 :LNAIKGEAS 1or7A 138 :LPEDLRMAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25079 # 1tx4A.191.126 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 191 :LNAIKGEAS 1tx4A 163 :LPEENYQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25080 # 2c3nA.191.108 read from T0506.t2k.many.frag # found chain 2c3nA in template set Warning: unaligning (T0506)A193 (2c3nA)T104 because G (3-10) conformation "forbidden" or filtered. T0506 191 :LN 2c3nA 102 :QH T0506 194 :IKGEAS 2c3nA 105 :TLRRSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=25082 # 1mpgA.191.173 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 191 :LNAIKGEAS 1mpgA 174 :MPLKRAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25083 # 1y9iA.191.108 read from T0506.t2k.many.frag # found chain 1y9iA in training set Warning: unaligning (T0506)N192 (1y9iA)G110 because S (epsilon) conformation "forbidden" or filtered. T0506 191 :L 1y9iA 109 :Y T0506 193 :AIKGEAS 1y9iA 111 :SIGFTNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25085 # 1h6gA.191.206 read from T0506.t2k.many.frag # found chain 1h6gA in template set T0506 191 :LNAIKGEAS 1h6gA 583 :VMPRFTEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25086 # 1pmi.191.236 read from T0506.t2k.many.frag # found chain 1pmi in training set T0506 191 :LNAIKGEAS 1pmi 238 :IDSRLPELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25087 # 2b0tA.191.686 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 191 :LNAIKGEAS 2b0tA 687 :LNTGAADID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25088 2fq4A expands to /projects/compbio/data/pdb/2fq4.pdb.gz 2fq4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2fq4A.191.51 read from T0506.t2k.many.frag # adding 2fq4A to template set # found chain 2fq4A in template set T0506 191 :LNAIKGEAS 2fq4A 52 :WWPNKAAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25089 1f2vA expands to /projects/compbio/data/pdb/1f2v.pdb.gz 1f2vA:# 1f2vA.191.38 read from T0506.t2k.many.frag # adding 1f2vA to template set # found chain 1f2vA in template set T0506 191 :LNAIKGEAS 1f2vA 30 :FSEEEADLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25090 # 1ie9A.191.156 read from T0506.t2k.many.frag # found chain 1ie9A in training set Warning: unaligning (T0506)N192 (1ie9A)H326 because P (beta_P) conformation "forbidden" or filtered. T0506 191 :L 1ie9A 325 :L T0506 193 :AIKGEAS 1ie9A 327 :EEEHVLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25092 2es9A expands to /projects/compbio/data/pdb/2es9.pdb.gz 2es9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2es9A.191.65 read from T0506.t2k.many.frag # adding 2es9A to template set # found chain 2es9A in template set Warning: unaligning (T0506)N192 (2es9A)N67 because P (beta_P) conformation "forbidden" or filtered. T0506 191 :L 2es9A 66 :W T0506 193 :AIKGEAS 2es9A 68 :PEFTKKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25094 # 1io1A.191.31 read from T0506.t2k.many.frag # found chain 1io1A in template set T0506 191 :LNAIKGEAS 1io1A 84 :INNNLQRVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25095 # 1xkpA.191.134 read from T0506.t2k.many.frag # found chain 1xkpA in training set T0506 191 :LNAIKGEAS 1xkpA 166 :MAEEQGETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25096 # 1xewY.191.97 read from T0506.t2k.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)N192 (1xewY)D1104 because P (beta_P) conformation "forbidden" or filtered. T0506 191 :L 1xewY 1103 :L T0506 193 :AIKGEAS 1xewY 1105 :DANVKRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25098 # 1z5oA.191.223 read from T0506.t2k.many.frag # found chain 1z5oA in template set T0506 191 :LNAIKGEAS 1z5oA 214 :AAKQSSLMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25099 # 1i2tA.191.15 read from T0506.t2k.many.frag # found chain 1i2tA in training set T0506 191 :LNAIKGEAS 1i2tA 1024 :MQPAFASKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25100 # 1h8eA.191.471 read from T0506.t2k.many.frag # found chain 1h8eA in template set T0506 191 :LNAIKGEAS 1h8eA 472 :VISQHQALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25101 # 1wuiL.192.251 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 192 :NAIKGEASR 1wuiL 270 :DEVYIPDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25102 # 1vjuA.192.164 read from T0506.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0506)N192 (1vjuA)G165 because Y (epsilon') conformation "forbidden" or filtered. T0506 193 :AIKGEASR 1vjuA 166 :ADVYARFK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25103 # 1n8vA.192.73 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 192 :NAIKGEASR 1n8vA 74 :IKNEIEIWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25104 # 2b0lA.192.22 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 192 :NAIKGEASR 2b0lA 180 :SYSELEAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25105 # 1svmA.192.317 read from T0506.t2k.many.frag # found chain 1svmA in template set T0506 192 :NAIKGEASR 1svmA 568 :IIQSGIALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25106 # 1y9iA.192.109 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 192 :NAIKGEASR 1y9iA 110 :GSIGFTNYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25107 # 2amlA.192.31 read from T0506.t2k.many.frag # found chain 2amlA in template set Warning: unaligning (T0506)I194 (2amlA)D22 because G (3-10) conformation "forbidden" or filtered. T0506 192 :NA 2amlA 20 :LA T0506 195 :KGEASR 2amlA 23 :FQTNAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25109 # 1n0qA.192.43 read from T0506.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0506)I194 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0506 192 :NA 1n0qA 44 :RN T0506 195 :KGEASR 1n0qA 47 :HLEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25111 # 1uzbA.192.109 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 192 :NAIKGEASR 1uzbA 110 :RRRKRELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25112 # 1nar.192.166 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 192 :NAIKGEASR 1nar 167 :SENNSSHYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25113 # 1kaeA.192.43 read from T0506.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)K195 (1kaeA)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 192 :NAI 1kaeA 44 :KAR T0506 196 :GEASR 1kaeA 48 :DEALR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25115 2cbiA expands to /projects/compbio/data/pdb/2cbi.pdb.gz 2cbiA:# 2cbiA.192.437 read from T0506.t2k.many.frag # adding 2cbiA to template set # found chain 2cbiA in template set T0506 192 :NAIKGEASR 2cbiA 468 :YGDLAEDMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25116 # 1qgoA.192.85 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 192 :NAIKGEASR 1qgoA 86 :NGDEYEKIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25117 # 1mpgA.192.174 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 192 :NAIKGEASR 1mpgA 175 :PLKRAEALI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25118 # 3ygsP.192.66 read from T0506.t2k.many.frag # found chain 3ygsP in template set Warning: unaligning (T0506)I194 (3ygsP)Q69 because G (3-10) conformation "forbidden" or filtered. T0506 192 :NA 3ygsP 67 :GS T0506 195 :KGEASR 3ygsP 70 :ALPLFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25120 # 2ao9A.192.24 read from T0506.t2k.many.frag # found chain 2ao9A in template set T0506 192 :NAIKGEASR 2ao9A 25 :TAKQIQAAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25121 # 2c3nA.192.109 read from T0506.t2k.many.frag # found chain 2c3nA in template set T0506 192 :NAIKGEASR 2c3nA 103 :HTTLRRSCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25122 # 1h6gA.192.207 read from T0506.t2k.many.frag # found chain 1h6gA in template set T0506 192 :NAIKGEASR 1h6gA 584 :MPRFTEQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25123 # 1i2aA.192.107 read from T0506.t2k.many.frag # found chain 1i2aA in template set T0506 192 :NAIKGEASR 1i2aA 108 :QADLMPLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25124 # 1tx4A.192.127 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 192 :NAIKGEASR 1tx4A 164 :PEENYQVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25125 # 1km4A.192.156 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)K195 (1km4A)R160 because D (zeta) conformation "forbidden" or filtered. T0506 192 :NAI 1km4A 157 :PST T0506 196 :GEASR 1km4A 161 :PERLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25127 # 1pmi.192.237 read from T0506.t2k.many.frag # found chain 1pmi in training set T0506 192 :NAIKGEASR 1pmi 239 :DSRLPELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25128 # 1yiiA.192.144 read from T0506.t2k.many.frag # found chain 1yiiA in training set Warning: unaligning (T0506)N192 (1yiiA)S146 because Y (epsilon') conformation "forbidden" or filtered. T0506 193 :AIKGEASR 1yiiA 147 :GHFQRLLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25129 # 1lla.192.84 read from T0506.t2k.many.frag # found chain 1lla in template set T0506 192 :NAIKGEASR 1lla 85 :NEGLFAFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25130 # 1or7A.192.141 read from T0506.t2k.many.frag # found chain 1or7A in template set T0506 192 :NAIKGEASR 1or7A 139 :PEDLRMAIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25131 # 1ie9A.192.157 read from T0506.t2k.many.frag # found chain 1ie9A in training set T0506 192 :NAIKGEASR 1ie9A 326 :HEEEHVLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25132 # 2es9A.192.66 read from T0506.t2k.many.frag # found chain 2es9A in template set Warning: unaligning (T0506)N192 (2es9A)N67 because P (beta_P) conformation "forbidden" or filtered. T0506 193 :AIKGEASR 2es9A 68 :PEFTKKVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25133 1aihA expands to /projects/compbio/data/pdb/1aih.pdb.gz 1aihA:# 1aihA.192.23 read from T0506.t2k.many.frag # adding 1aihA to template set # found chain 1aihA in template set Warning: unaligning (T0506)G196 (1aihA)G195 because H (helix) conformation "forbidden" or filtered. T0506 192 :NAIK 1aihA 191 :NPDL T0506 197 :EASR 1aihA 196 :LIVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25135 # 1xewY.192.98 read from T0506.t2k.many.frag # found chain 1xewY in template set T0506 192 :NAIKGEASR 1xewY 1104 :DDANVKRVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25136 # 2fq4A.192.52 read from T0506.t2k.many.frag # found chain 2fq4A in template set T0506 192 :NAIKGEASR 2fq4A 53 :WPNKAAVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25137 # 1n0qA.193.44 read from T0506.t2k.many.frag # found chain 1n0qA in training set Warning: unaligning (T0506)I194 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0506 193 :A 1n0qA 45 :N T0506 195 :KGEASRL 1n0qA 47 :HLEVVKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25139 # 1wuiL.193.252 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 193 :AIKGEASRL 1wuiL 271 :EVYIPDLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25140 # 1n8vA.193.74 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)K195 (1n8vA)E77 because D (zeta) conformation "forbidden" or filtered. T0506 193 :AI 1n8vA 75 :KN T0506 196 :GEASRL 1n8vA 78 :IEIWRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25142 # 2b0lA.193.23 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 193 :AIKGEASRL 2b0lA 181 :YSELEAIEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25143 # 1vjuA.193.165 read from T0506.t2k.many.frag # found chain 1vjuA in training set Warning: unaligning (T0506)I194 (1vjuA)D167 because G (3-10) conformation "forbidden" or filtered. T0506 193 :A 1vjuA 166 :A T0506 195 :KGEASRL 1vjuA 168 :VYARFKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25145 # 1svmA.193.318 read from T0506.t2k.many.frag # found chain 1svmA in template set T0506 193 :AIKGEASRL 1svmA 569 :IQSGIALLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25146 # 2cbiA.193.438 read from T0506.t2k.many.frag # found chain 2cbiA in template set T0506 193 :AIKGEASRL 2cbiA 469 :GDLAEDMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25147 # 1kaeA.193.44 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 193 :AIKGEASRL 1kaeA 45 :ARGDEALRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25148 # 1y9iA.193.110 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 193 :AIKGEASRL 1y9iA 111 :SIGFTNYGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25149 # 1nar.193.167 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 193 :AIKGEASRL 1nar 168 :ENNSSHYQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25150 # 2amlA.193.32 read from T0506.t2k.many.frag # found chain 2amlA in template set Warning: unaligning (T0506)I194 (2amlA)D22 because G (3-10) conformation "forbidden" or filtered. T0506 193 :A 2amlA 21 :A T0506 195 :KGEASRL 2amlA 23 :FQTNAEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25152 # 1qgoA.193.86 read from T0506.t2k.many.frag # found chain 1qgoA in template set Warning: unaligning (T0506)A193 (1qgoA)G87 because Y (epsilon') conformation "forbidden" or filtered. T0506 194 :IKGEASRL 1qgoA 88 :DEYEKIVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25153 # 2ao9A.193.25 read from T0506.t2k.many.frag # found chain 2ao9A in template set T0506 193 :AIKGEASRL 2ao9A 26 :AKQIQAAYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25154 # 1km4A.193.157 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)K195 (1km4A)R160 because D (zeta) conformation "forbidden" or filtered. T0506 193 :AI 1km4A 158 :ST T0506 196 :GEASRL 1km4A 161 :PERLSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25156 # 1mpgA.193.175 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 193 :AIKGEASRL 1mpgA 176 :LKRAEALIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25157 # 1uzbA.193.110 read from T0506.t2k.many.frag # found chain 1uzbA in training set T0506 193 :AIKGEASRL 1uzbA 111 :RRKRELEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25158 # 1h6gA.193.208 read from T0506.t2k.many.frag # found chain 1h6gA in template set T0506 193 :AIKGEASRL 1h6gA 585 :PRFTEQVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25159 # 1i2aA.193.108 read from T0506.t2k.many.frag # found chain 1i2aA in template set T0506 193 :AIKGEASRL 1i2aA 109 :ADLMPLIGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25160 # 1aihA.193.24 read from T0506.t2k.many.frag # found chain 1aihA in template set T0506 193 :AIKGEASRL 1aihA 192 :PDLGLIVRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25161 # 1yiiA.193.145 read from T0506.t2k.many.frag # found chain 1yiiA in training set T0506 193 :AIKGEASRL 1yiiA 147 :GHFQRLLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25162 # 2c3nA.193.110 read from T0506.t2k.many.frag # found chain 2c3nA in template set T0506 193 :AIKGEASRL 2c3nA 104 :TTLRRSCLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25163 # 1mtyB.193.320 read from T0506.t2k.many.frag # found chain 1mtyB in training set T0506 193 :AIKGEASRL 1mtyB 326 :EPTIAALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25164 1ra6A expands to /projects/compbio/data/pdb/1ra6.pdb.gz 1ra6A:Bad short name: AS for alphabet: pdb_atoms Bad short name: AS for alphabet: pdb_atoms Bad short name: AS for alphabet: pdb_atoms Bad short name: AS for alphabet: pdb_atoms # 1ra6A.193.422 read from T0506.t2k.many.frag # adding 1ra6A to template set # found chain 1ra6A in template set Warning: unaligning (T0506)K195 (1ra6A)G425 because S (epsilon) conformation "forbidden" or filtered. T0506 193 :AI 1ra6A 423 :HN T0506 196 :GEASRL 1ra6A 426 :EEEYNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25166 # 1pmi.193.238 read from T0506.t2k.many.frag # found chain 1pmi in training set T0506 193 :AIKGEASRL 1pmi 240 :SRLPELIQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25167 # 1tx4A.193.128 read from T0506.t2k.many.frag # found chain 1tx4A in training set T0506 193 :AIKGEASRL 1tx4A 165 :EENYQVLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25168 1wy9A expands to /projects/compbio/data/pdb/1wy9.pdb.gz 1wy9A:# 1wy9A.193.40 read from T0506.t2k.many.frag # adding 1wy9A to template set # found chain 1wy9A in template set T0506 193 :AIKGEASRL 1wy9A 41 :EDLPSKLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25169 # 1p0zA.193.30 read from T0506.t2k.many.frag # found chain 1p0zA in training set Warning: unaligning (T0506)I194 (1p0zA)R36 because L (left) conformation "forbidden" or filtered. T0506 193 :A 1p0zA 35 :K T0506 195 :KGEASRL 1p0zA 37 :DLARIKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25171 # 3ygsP.193.67 read from T0506.t2k.many.frag # found chain 3ygsP in template set T0506 193 :AIKGEASRL 3ygsP 68 :SQALPLFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25172 # 1f2vA.193.40 read from T0506.t2k.many.frag # found chain 1f2vA in template set T0506 193 :AIKGEASRL 1f2vA 32 :EEEADLAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25173 1wiwA expands to /projects/compbio/data/pdb/1wiw.pdb.gz 1wiwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wiwA.193.172 read from T0506.t2k.many.frag # adding 1wiwA to template set # found chain 1wiwA in template set T0506 193 :AIKGEASRL 1wiwA 173 :RPLEGAVQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25174 # 1n0qA.194.45 read from T0506.t2k.many.frag # found chain 1n0qA in training set T0506 194 :IKGEASRLA 1n0qA 46 :GHLEVVKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25175 # 1n8vA.194.75 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)K195 (1n8vA)E77 because D (zeta) conformation "forbidden" or filtered. T0506 194 :I 1n8vA 76 :N T0506 196 :GEASRLA 1n8vA 78 :IEIWREL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25177 # 1wuiL.194.253 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 194 :IKGEASRLA 1wuiL 272 :VYIPDLLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25178 # 2b0lA.194.24 read from T0506.t2k.many.frag # found chain 2b0lA in template set T0506 194 :IKGEASRLA 2b0lA 182 :SELEAIEHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25179 # 2cbiA.194.439 read from T0506.t2k.many.frag # found chain 2cbiA in template set T0506 194 :IKGEASRLA 2cbiA 470 :DLAEDMKVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25180 # 1nar.194.168 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 194 :IKGEASRLA 1nar 169 :NNSSHYQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25181 # 1vjuA.194.166 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 194 :IKGEASRLA 1vjuA 167 :DVYARFKGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25182 # 1y9iA.194.111 read from T0506.t2k.many.frag # found chain 1y9iA in training set Warning: unaligning (T0506)K195 (1y9iA)G113 because G (3-10) conformation "forbidden" or filtered. T0506 194 :I 1y9iA 112 :I T0506 196 :GEASRLA 1y9iA 114 :FTNYGYI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25184 # 1kaeA.194.45 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 194 :IKGEASRLA 1kaeA 46 :RGDEALREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25185 # 1qgoA.194.87 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 194 :IKGEASRLA 1qgoA 88 :DEYEKIVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25186 # 1km4A.194.158 read from T0506.t2k.many.frag # found chain 1km4A in training set T0506 194 :IKGEASRLA 1km4A 159 :TRPERLSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25187 # 2amlA.194.33 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 194 :IKGEASRLA 2amlA 22 :DFQTNAEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25188 # 1i2aA.194.109 read from T0506.t2k.many.frag # found chain 1i2aA in template set T0506 194 :IKGEASRLA 1i2aA 110 :DLMPLIGRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25189 # 1mpgA.194.176 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 194 :IKGEASRLA 1mpgA 177 :KRAEALIHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25190 # 1h6gA.194.209 read from T0506.t2k.many.frag # found chain 1h6gA in template set T0506 194 :IKGEASRLA 1h6gA 586 :RFTEQVEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25191 # 1qtwA.194.155 read from T0506.t2k.many.frag # found chain 1qtwA in training set T0506 194 :IKGEASRLA 1qtwA 156 :FKFEHLAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25192 # 1svmA.194.319 read from T0506.t2k.many.frag # found chain 1svmA in template set Warning: unaligning (T0506)I194 (1svmA)Q570 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G196 (1svmA)G572 because H (helix) conformation "forbidden" or filtered. T0506 195 :K 1svmA 571 :S T0506 197 :EASRLA 1svmA 573 :IALLLM Number of specific fragments extracted= 2 number of extra gaps= 2 total=25194 1ib2A expands to /projects/compbio/data/pdb/1ib2.pdb.gz 1ib2A:# 1ib2A.194.177 read from T0506.t2k.many.frag # adding 1ib2A to template set # found chain 1ib2A in template set T0506 194 :IKGEASRLA 1ib2A 1005 :YGCRVIQRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25195 1pea expands to /projects/compbio/data/pdb/1pea.pdb.gz 1pea:Warning: there is no chain 1pea will retry with 1peaA # 1pea.194.208 read from T0506.t2k.many.frag # adding 1pea to template set # found chain 1pea in template set T0506 194 :IKGEASRLA 1pea 209 :GTAELYRAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25196 # 1wiwA.194.173 read from T0506.t2k.many.frag # found chain 1wiwA in template set T0506 194 :IKGEASRLA 1wiwA 174 :PLEGAVQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25197 # 1u7gA.194.22 read from T0506.t2k.many.frag # found chain 1u7gA in training set Warning: unaligning (T0506)G196 (1u7gA)I25 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)E197 (1u7gA)P26 because C (cis) conformation "forbidden" or filtered. T0506 194 :IK 1u7gA 23 :MT T0506 198 :ASRLA 1u7gA 27 :GIALF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25199 # 1mtyB.194.321 read from T0506.t2k.many.frag # found chain 1mtyB in training set T0506 194 :IKGEASRLA 1mtyB 327 :PTIAALRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25200 # 1f2vA.194.41 read from T0506.t2k.many.frag # found chain 1f2vA in template set T0506 194 :IKGEASRLA 1f2vA 33 :EEADLAVRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25201 1t0qB expands to /projects/compbio/data/pdb/1t0q.pdb.gz 1t0qB:# 1t0qB.194.294 read from T0506.t2k.many.frag # adding 1t0qB to template set # found chain 1t0qB in template set T0506 194 :IKGEASRLA 1t0qB 295 :LADKAIEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25202 # 1pmi.194.239 read from T0506.t2k.many.frag # found chain 1pmi in training set T0506 194 :IKGEASRLA 1pmi 241 :RLPELIQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25203 # 2ao9A.194.26 read from T0506.t2k.many.frag # found chain 2ao9A in template set T0506 194 :IKGEASRLA 2ao9A 27 :KQIQAAYLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25204 # 1yiiA.194.146 read from T0506.t2k.many.frag # found chain 1yiiA in training set T0506 194 :IKGEASRLA 1yiiA 148 :HFQRLLVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25205 # 1p0zA.194.31 read from T0506.t2k.many.frag # found chain 1p0zA in training set Warning: unaligning (T0506)I194 (1p0zA)R36 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K195 (1p0zA)D37 because N (gamma') conformation "forbidden" or filtered. T0506 196 :GEASRLA 1p0zA 38 :LARIKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25206 # 1eyqA.194.126 read from T0506.t2k.many.frag # found chain 1eyqA in template set T0506 194 :IKGEASRLA 1eyqA 127 :AEAEAMQKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25207 # 1xewY.194.100 read from T0506.t2k.many.frag # found chain 1xewY in template set T0506 194 :IKGEASRLA 1xewY 1106 :ANVKRVADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25208 # 1n0qA.195.46 read from T0506.t2k.many.frag # found chain 1n0qA in training set T0506 195 :KGEASRLAV 1n0qA 47 :HLEVVKLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25209 # 1n8vA.195.76 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 195 :KGEASRLAV 1n8vA 77 :EIEIWRELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25210 # 2cbiA.195.440 read from T0506.t2k.many.frag # found chain 2cbiA in template set T0506 195 :KGEASRLAV 2cbiA 471 :LAEDMKVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25211 # 2b0lA.195.25 read from T0506.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0506)V203 (2b0lA)F191 because G (3-10) conformation "forbidden" or filtered. T0506 195 :KGEASRLA 2b0lA 183 :ELEAIEHI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25212 # 1wuiL.195.254 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 195 :KGEASRLAV 1wuiL 273 :YIPDLLVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25213 # 1nar.195.169 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 195 :KGEASRLAV 1nar 170 :NSSHYQKLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25214 # 1pea.195.209 read from T0506.t2k.many.frag # found chain 1pea in template set T0506 195 :KGEASRLAV 1pea 210 :TAELYRAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25215 # 1qtwA.195.156 read from T0506.t2k.many.frag # found chain 1qtwA in training set T0506 195 :KGEASRLAV 1qtwA 157 :KFEHLAAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25216 # 1ib2A.195.178 read from T0506.t2k.many.frag # found chain 1ib2A in template set T0506 195 :KGEASRLAV 1ib2A 1006 :GCRVIQRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25217 # 1kaeA.195.46 read from T0506.t2k.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)K195 (1kaeA)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 196 :GEASRLAV 1kaeA 48 :DEALREYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=25218 # 1km4A.195.159 read from T0506.t2k.many.frag # found chain 1km4A in training set T0506 195 :KGEASRLAV 1km4A 160 :RPERLSRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25219 # 1y9iA.195.112 read from T0506.t2k.many.frag # found chain 1y9iA in training set Warning: unaligning (T0506)K195 (1y9iA)G113 because G (3-10) conformation "forbidden" or filtered. T0506 196 :GEASRLAV 1y9iA 114 :FTNYGYID Number of specific fragments extracted= 1 number of extra gaps= 1 total=25220 # 1u7gA.195.23 read from T0506.t2k.many.frag # found chain 1u7gA in training set Warning: unaligning (T0506)E197 (1u7gA)P26 because C (cis) conformation "forbidden" or filtered. T0506 195 :KG 1u7gA 24 :TI T0506 198 :ASRLAV 1u7gA 27 :GIALFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25222 # 1f2vA.195.42 read from T0506.t2k.many.frag # found chain 1f2vA in template set T0506 195 :KGEASRLAV 1f2vA 34 :EADLAVRMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25223 # 1svmA.195.320 read from T0506.t2k.many.frag # found chain 1svmA in template set T0506 195 :KGEASRLAV 1svmA 571 :SGIALLLML Number of specific fragments extracted= 1 number of extra gaps= 0 total=25224 # 1qgoA.195.88 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 195 :KGEASRLAV 1qgoA 89 :EYEKIVREV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25225 # 1i2aA.195.110 read from T0506.t2k.many.frag # found chain 1i2aA in template set T0506 195 :KGEASRLAV 1i2aA 111 :LMPLIGRYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25226 # 1t0qB.195.295 read from T0506.t2k.many.frag # found chain 1t0qB in template set T0506 195 :KGEASRLAV 1t0qB 296 :ADKAIEAYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25227 # 2amlA.195.34 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 195 :KGEASRLAV 2amlA 23 :FQTNAEKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25228 # 1mpgA.195.177 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 195 :KGEASRLAV 1mpgA 178 :RAEALIHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25229 # 1onwA.195.262 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 195 :KGEASRLAV 1onwA 263 :PAEGIARAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25230 # 1vjuA.195.167 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 195 :KGEASRLAV 1vjuA 168 :VYARFKGWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25231 # 1wiwA.195.174 read from T0506.t2k.many.frag # found chain 1wiwA in template set T0506 195 :KGEASRLAV 1wiwA 175 :LEGAVQTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25232 # 1yiiA.195.147 read from T0506.t2k.many.frag # found chain 1yiiA in training set T0506 195 :KGEASRLAV 1yiiA 149 :FQRLLVVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25233 # 1eyqA.195.127 read from T0506.t2k.many.frag # found chain 1eyqA in template set T0506 195 :KGEASRLAV 1eyqA 128 :EAEAMQKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25234 # 1pmi.195.240 read from T0506.t2k.many.frag # found chain 1pmi in training set T0506 195 :KGEASRLAV 1pmi 242 :LPELIQRLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25235 # 1aihA.195.26 read from T0506.t2k.many.frag # found chain 1aihA in template set T0506 195 :KGEASRLAV 1aihA 194 :LGLIVRICL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25236 # 1mtyB.195.322 read from T0506.t2k.many.frag # found chain 1mtyB in training set T0506 195 :KGEASRLAV 1mtyB 328 :TIAALRDFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25237 # 2b0tA.195.690 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 195 :KGEASRLAV 2b0tA 691 :AADIDAALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25238 # 1sg4A.195.227 read from T0506.t2k.many.frag # found chain 1sg4A in training set T0506 195 :KGEASRLAV 1sg4A 228 :RDADVQNFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25239 # 1n0qA.196.47 read from T0506.t2k.many.frag # found chain 1n0qA in training set T0506 196 :GEASRLAVL 1n0qA 48 :LEVVKLLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25240 # 2cbiA.196.441 read from T0506.t2k.many.frag # found chain 2cbiA in template set T0506 196 :GEASRLAVL 2cbiA 472 :AEDMKVFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25241 # 1n8vA.196.77 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 196 :GEASRLAVL 1n8vA 78 :IEIWRELTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25242 # 1pea.196.210 read from T0506.t2k.many.frag # found chain 1pea in template set T0506 196 :GEASRLAVL 1pea 211 :AELYRAIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25243 # 1nar.196.170 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 196 :GEASRLAVL 1nar 171 :SSHYQKLYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25244 # 2b0lA.196.26 read from T0506.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b0lA)E193 T0506 196 :GEASRLAV 2b0lA 184 :LEAIEHIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25245 # 1wuiL.196.255 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 196 :GEASRLAVL 1wuiL 274 :IPDLLVVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25246 # 1qtwA.196.157 read from T0506.t2k.many.frag # found chain 1qtwA in training set T0506 196 :GEASRLAVL 1qtwA 158 :FEHLAAIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25247 # 1ib2A.196.179 read from T0506.t2k.many.frag # found chain 1ib2A in template set T0506 196 :GEASRLAVL 1ib2A 1007 :CRVIQRILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25248 # 1u7gA.196.24 read from T0506.t2k.many.frag # found chain 1u7gA in training set Warning: unaligning (T0506)E197 (1u7gA)P26 because C (cis) conformation "forbidden" or filtered. T0506 196 :G 1u7gA 25 :I T0506 198 :ASRLAVL 1u7gA 27 :GIALFYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25250 # 1onwA.196.263 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 196 :GEASRLAVL 1onwA 264 :AEGIARAVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25251 # 1km4A.196.160 read from T0506.t2k.many.frag # found chain 1km4A in training set T0506 196 :GEASRLAVL 1km4A 161 :PERLSRLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25252 # 1qgoA.196.89 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 196 :GEASRLAVL 1qgoA 90 :YEKIVREVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25253 # 1t0qB.196.296 read from T0506.t2k.many.frag # found chain 1t0qB in template set T0506 196 :GEASRLAVL 1t0qB 297 :DKAIEAYCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25254 # 1f2vA.196.43 read from T0506.t2k.many.frag # found chain 1f2vA in template set T0506 196 :GEASRLAVL 1f2vA 35 :ADLAVRMVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25255 # 1kaeA.196.47 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 196 :GEASRLAVL 1kaeA 48 :DEALREYSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25256 # 1svmA.196.321 read from T0506.t2k.many.frag # found chain 1svmA in template set T0506 196 :GEASRLAVL 1svmA 572 :GIALLLMLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25257 # 1i2aA.196.111 read from T0506.t2k.many.frag # found chain 1i2aA in template set T0506 196 :GEASRLAVL 1i2aA 112 :MPLIGRYMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25258 # 1wiwA.196.175 read from T0506.t2k.many.frag # found chain 1wiwA in template set T0506 196 :GEASRLAVL 1wiwA 176 :EGAVQTLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25259 # 2amlA.196.35 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 196 :GEASRLAVL 2amlA 24 :QTNAEKLES Number of specific fragments extracted= 1 number of extra gaps= 0 total=25260 # 1vjuA.196.168 read from T0506.t2k.many.frag # found chain 1vjuA in training set T0506 196 :GEASRLAVL 1vjuA 169 :YARFKGWCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25261 # 1eyqA.196.128 read from T0506.t2k.many.frag # found chain 1eyqA in template set T0506 196 :GEASRLAVL 1eyqA 129 :AEAMQKFAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25262 # 1y9iA.196.113 read from T0506.t2k.many.frag # found chain 1y9iA in training set T0506 196 :GEASRLAVL 1y9iA 114 :FTNYGYIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25263 # 2b0tA.196.691 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 196 :GEASRLAVL 2b0tA 692 :ADIDAALLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25264 # 1mpgA.196.178 read from T0506.t2k.many.frag # found chain 1mpgA in training set T0506 196 :GEASRLAVL 1mpgA 179 :AEALIHLAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25265 # 1yiiA.196.148 read from T0506.t2k.many.frag # found chain 1yiiA in training set T0506 196 :GEASRLAVL 1yiiA 150 :QRLLVVLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25266 # 1xewY.196.102 read from T0506.t2k.many.frag # found chain 1xewY in template set T0506 196 :GEASRLAVL 1xewY 1108 :VKRVADLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25267 2az4A expands to /projects/compbio/data/pdb/2az4.pdb.gz 2az4A:# 2az4A.196.196 read from T0506.t2k.many.frag # adding 2az4A to template set # found chain 2az4A in template set T0506 196 :GEASRLAVL 2az4A 197 :REETLAFCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25268 2b6cA expands to /projects/compbio/data/pdb/2b6c.pdb.gz 2b6cA:Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 46, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 48, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 50, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 120, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 124, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 339, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 341, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 344, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 348, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 350, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 352, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 354, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 356, because occupancy 0.400 <= existing 0.600 in 2b6cA Skipped atom 526, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 537, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 729, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 733, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 735, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1282, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1292, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1294, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1535, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1539, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1541, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1669, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1673, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1675, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1677, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1679, because occupancy 0.500 <= existing 0.500 in 2b6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1699, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1711, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1796, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1800, because occupancy 0.500 <= existing 0.500 in 2b6cA Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 2b6cA # 2b6cA.196.175 read from T0506.t2k.many.frag # adding 2b6cA to template set # found chain 2b6cA in template set T0506 196 :GEASRLAVL 2b6cA 173 :QKAIGWSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25269 # 1mtyB.196.323 read from T0506.t2k.many.frag # found chain 1mtyB in training set T0506 196 :GEASRLAVL 1mtyB 329 :IAALRDFMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25270 # 1n0qA.197.48 read from T0506.t2k.many.frag # found chain 1n0qA in training set T0506 197 :EASRLAVLA 1n0qA 49 :EVVKLLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25271 # 1pea.197.211 read from T0506.t2k.many.frag # found chain 1pea in template set T0506 197 :EASRLAVLA 1pea 212 :ELYRAIARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25272 # 1qtwA.197.158 read from T0506.t2k.many.frag # found chain 1qtwA in training set T0506 197 :EASRLAVLA 1qtwA 159 :EHLAAIIDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25273 # 2cbiA.197.442 read from T0506.t2k.many.frag # found chain 2cbiA in template set T0506 197 :EASRLAVLA 2cbiA 473 :EDMKVFANH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25274 # 1u7gA.197.25 read from T0506.t2k.many.frag # found chain 1u7gA in training set Warning: unaligning (T0506)E197 (1u7gA)P26 because C (cis) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1u7gA 27 :GIALFYGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25275 # 1nar.197.171 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 197 :EASRLAVLA 1nar 172 :SHYQKLYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25276 # 1wuiL.197.256 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 197 :EASRLAVLA 1wuiL 275 :PDLLVVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25277 # 1ib2A.197.180 read from T0506.t2k.many.frag # found chain 1ib2A in template set T0506 197 :EASRLAVLA 1ib2A 1008 :RVIQRILEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25278 # 1n8vA.197.78 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 197 :EASRLAVLA 1n8vA 79 :EIWRELTAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25279 # 1onwA.197.264 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 197 :EASRLAVLA 1onwA 265 :EGIARAVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25280 # 2b0lA.197.27 read from T0506.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b0lA)E193 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b0lA)E193 T0506 197 :EASRLAV 2b0lA 185 :EAIEHIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25281 # 1f2vA.197.44 read from T0506.t2k.many.frag # found chain 1f2vA in template set T0506 197 :EASRLAVLA 1f2vA 36 :DLAVRMVHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25282 # 1t0qB.197.297 read from T0506.t2k.many.frag # found chain 1t0qB in template set T0506 197 :EASRLAVLA 1t0qB 298 :KAIEAYCSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25283 # 1cl8A.197.146 read from T0506.t2k.many.frag # found chain 1cl8A in training set T0506 197 :EASRLAVLA 1cl8A 148 :KNISEIANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25284 # 1km4A.197.161 read from T0506.t2k.many.frag # found chain 1km4A in training set T0506 197 :EASRLAVLA 1km4A 162 :ERLSRLREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25285 # 1hqsA.197.311 read from T0506.t2k.many.frag # found chain 1hqsA in training set T0506 197 :EASRLAVLA 1hqsA 312 :YISDALAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25286 # 1wiwA.197.176 read from T0506.t2k.many.frag # found chain 1wiwA in template set T0506 197 :EASRLAVLA 1wiwA 177 :GAVQTLFAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25287 # 1svmA.197.322 read from T0506.t2k.many.frag # found chain 1svmA in template set T0506 197 :EASRLAVLA 1svmA 573 :IALLLMLIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25288 # 2amlA.197.36 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 197 :EASRLAVLA 2amlA 25 :TNAEKLESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25289 # 2b6cA.197.176 read from T0506.t2k.many.frag # found chain 2b6cA in template set T0506 197 :EASRLAVLA 2b6cA 174 :KAIGWSLRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25290 # 1aihA.197.28 read from T0506.t2k.many.frag # found chain 1aihA in template set T0506 197 :EASRLAVLA 1aihA 196 :LIVRICLAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25291 # 1eyqA.197.129 read from T0506.t2k.many.frag # found chain 1eyqA in template set T0506 197 :EASRLAVLA 1eyqA 130 :EAMQKFAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25292 1j9lA expands to /projects/compbio/data/pdb/1j9l.pdb.gz 1j9lA:# 1j9lA.197.13 read from T0506.t2k.many.frag # adding 1j9lA to template set # found chain 1j9lA in template set T0506 197 :EASRLAVLA 1j9lA 14 :KGIIVLAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25293 # 1qgoA.197.90 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 197 :EASRLAVLA 1qgoA 91 :EKIVREVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25294 # 2b0tA.197.692 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 197 :EASRLAVLA 2b0tA 693 :DIDAALLAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25295 # 1khbA.197.537 read from T0506.t2k.many.frag # found chain 1khbA in template set T0506 197 :EASRLAVLA 1khbA 535 :RVLEWMFNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25296 # 1kaeA.197.48 read from T0506.t2k.many.frag # found chain 1kaeA in training set T0506 197 :EASRLAVLA 1kaeA 49 :EALREYSAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25297 1vd6A expands to /projects/compbio/data/pdb/1vd6.pdb.gz 1vd6A:Skipped atom 756, because occupancy 0.490 <= existing 0.510 in 1vd6A Skipped atom 760, because occupancy 0.480 <= existing 0.520 in 1vd6A Skipped atom 764, because occupancy 0.250 <= existing 0.750 in 1vd6A Skipped atom 768, because occupancy 0.430 <= existing 0.570 in 1vd6A Skipped atom 772, because occupancy 0.460 <= existing 0.540 in 1vd6A Skipped atom 776, because occupancy 0.050 <= existing 0.950 in 1vd6A Skipped atom 784, because occupancy 0.490 <= existing 0.510 in 1vd6A Skipped atom 786, because occupancy 0.010 <= existing 0.990 in 1vd6A Skipped atom 794, because occupancy 0.020 <= existing 0.980 in 1vd6A # 1vd6A.197.109 read from T0506.t2k.many.frag # adding 1vd6A to template set # found chain 1vd6A in template set T0506 197 :EASRLAVLA 1vd6A 110 :EAARRLAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25298 # 2d81A.197.109 read from T0506.t2k.many.frag # found chain 2d81A in template set T0506 197 :EASRLAVLA 2d81A 130 :NQLKAQLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25299 1byrA expands to /projects/compbio/data/pdb/1byr.pdb.gz 1byrA:# 1byrA.197.71 read from T0506.t2k.many.frag # adding 1byrA to template set # found chain 1byrA in template set T0506 197 :EASRLAVLA 1byrA 72 :AAMNYIANS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25300 # 1pea.198.212 read from T0506.t2k.many.frag # found chain 1pea in template set T0506 198 :ASRLAVLAG 1pea 213 :LYRAIARRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25301 # 1u7gA.198.26 read from T0506.t2k.many.frag # found chain 1u7gA in training set Warning: unaligning (T0506)G206 (1u7gA)L35 because G (3-10) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1u7gA 27 :GIALFYGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25302 # 1n0qA.198.49 read from T0506.t2k.many.frag # found chain 1n0qA in training set T0506 198 :ASRLAVLAG 1n0qA 50 :VVKLLLEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25303 # 1qtwA.198.159 read from T0506.t2k.many.frag # found chain 1qtwA in training set T0506 198 :ASRLAVLAG 1qtwA 160 :HLAAIIDGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25304 # 2cbiA.198.443 read from T0506.t2k.many.frag # found chain 2cbiA in template set T0506 198 :ASRLAVLAG 2cbiA 474 :DMKVFANHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25305 # 1ib2A.198.181 read from T0506.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)G206 (1ib2A)C1017 because P (beta_P) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1ib2A 1009 :VIQRILEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=25306 # 1wuiL.198.257 read from T0506.t2k.many.frag # found chain 1wuiL in template set Warning: unaligning (T0506)G206 (1wuiL)Y284 because G (3-10) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1wuiL 276 :DLLVVAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25307 # 1nar.198.172 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 198 :ASRLAVLAG 1nar 173 :HYQKLYNAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25308 # 1onwA.198.265 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 198 :ASRLAVLAG 1onwA 266 :GIARAVQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25309 # 2d81A.198.110 read from T0506.t2k.many.frag # found chain 2d81A in template set Warning: unaligning (T0506)G206 (2d81A)F139 because G (3-10) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 2d81A 131 :QLKAQLGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=25310 # 1hqsA.198.312 read from T0506.t2k.many.frag # found chain 1hqsA in training set T0506 198 :ASRLAVLAG 1hqsA 313 :ISDALAAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25311 # 1j9lA.198.14 read from T0506.t2k.many.frag # found chain 1j9lA in template set T0506 198 :ASRLAVLAG 1j9lA 15 :GIIVLAELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25312 # 1f2vA.198.45 read from T0506.t2k.many.frag # found chain 1f2vA in template set T0506 198 :ASRLAVLAG 1f2vA 37 :LAVRMVHAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=25313 # 1cl8A.198.147 read from T0506.t2k.many.frag # found chain 1cl8A in training set Warning: unaligning (T0506)G206 (1cl8A)M157 because G (3-10) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1cl8A 149 :NISEIANF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25314 # 1n8vA.198.79 read from T0506.t2k.many.frag # found chain 1n8vA in training set T0506 198 :ASRLAVLAG 1n8vA 80 :IWRELTAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25315 # 1t0qB.198.298 read from T0506.t2k.many.frag # found chain 1t0qB in template set T0506 198 :ASRLAVLAG 1t0qB 299 :AIEAYCSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25316 # 2b6cA.198.177 read from T0506.t2k.many.frag # found chain 2b6cA in template set T0506 198 :ASRLAVLAG 2b6cA 175 :AIGWSLRQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25317 # 1svmA.198.323 read from T0506.t2k.many.frag # found chain 1svmA in template set T0506 198 :ASRLAVLAG 1svmA 574 :ALLLMLIWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25318 # 1wiwA.198.177 read from T0506.t2k.many.frag # found chain 1wiwA in template set T0506 198 :ASRLAVLAG 1wiwA 178 :AVQTLFARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25319 1vb3A expands to /projects/compbio/data/pdb/1vb3.pdb.gz 1vb3A:# 1vb3A.198.112 read from T0506.t2k.many.frag # adding 1vb3A to template set # found chain 1vb3A in template set T0506 198 :ASRLAVLAG 1vb3A 113 :FMAQMLTHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25320 # 1khbA.198.538 read from T0506.t2k.many.frag # found chain 1khbA in template set T0506 198 :ASRLAVLAG 1khbA 536 :VLEWMFNRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25321 # 2amlA.198.37 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 198 :ASRLAVLAG 2amlA 26 :NAEKLESLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25322 # 1qgoA.198.91 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 198 :ASRLAVLAG 1qgoA 92 :KIVREVQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25323 # 1vd6A.198.110 read from T0506.t2k.many.frag # found chain 1vd6A in template set T0506 198 :ASRLAVLAG 1vd6A 111 :AARRLAALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25324 # 1yiiA.198.150 read from T0506.t2k.many.frag # found chain 1yiiA in training set Warning: unaligning (T0506)G206 (1yiiA)N160 because G (3-10) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1yiiA 152 :LLVVLLQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25325 2bfwA expands to /projects/compbio/data/pdb/2bfw.pdb.gz 2bfwA:Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 73, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 75, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 77, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 79, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 81, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 83, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 85, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 87, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 89, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 257, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 261, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 263, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 265, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 311, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 313, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 315, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 317, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 364, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 366, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 415, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 417, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 419, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 434, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 436, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 438, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 440, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 647, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 649, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 651, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 653, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 655, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 657, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 659, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 883, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 885, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 940, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 942, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 944, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 946, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 950, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 952, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1183, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1185, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1187, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1189, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1191, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1473, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1475, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1477, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1479, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1481, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1483, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1485, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1487, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1634, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1640, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1644, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1646, because occupancy 0.500 <= existing 0.500 in 2bfwA # 2bfwA.198.53 read from T0506.t2k.many.frag # adding 2bfwA to template set # found chain 2bfwA in template set T0506 198 :ASRLAVLAG 2bfwA 267 :VLLKAIEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25326 1i24A expands to /projects/compbio/data/pdb/1i24.pdb.gz 1i24A:Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 269, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 271, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 273, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 275, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 277, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 376, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 378, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 380, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 382, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 384, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 386, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 388, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 390, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 392, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 394, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 396, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 398, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 400, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 402, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 404, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 406, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 408, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 410, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 412, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 414, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 416, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 487, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 519, because occupancy 0.200 <= existing 0.800 in 1i24A Skipped atom 521, because occupancy 0.200 <= existing 0.800 in 1i24A Skipped atom 563, because occupancy 0.300 <= existing 0.700 in 1i24A Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 727, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 916, because occupancy 0.200 <= existing 0.600 in 1i24A Skipped atom 917, because occupancy 0.200 <= existing 0.600 in 1i24A Skipped atom 1313, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1317, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1319, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1321, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1323, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1392, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1394, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1396, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1644, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1646, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1648, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1907, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1909, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1911, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1913, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1915, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1917, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2153, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2215, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2217, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2219, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2221, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2299, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2301, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2303, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2305, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2307, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2309, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2452, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2721, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2802, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2883, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2968, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2970, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2972, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2974, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2976, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 3143, because occupancy 0.400 <= existing 0.600 in 1i24A # 1i24A.198.283 read from T0506.t2k.many.frag # adding 1i24A to template set # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. T0506 198 :ASRLAVL 1i24A 274 :CVEIAIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25327 # 2b0lA.198.28 read from T0506.t2k.many.frag # found chain 2b0lA in template set Warning: unaligning (T0506)L204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b0lA)E193 Warning: unaligning (T0506)A205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b0lA)E193 T0506 198 :ASRLAV 2b0lA 186 :AIEHIF T0506 206 :G 2b0lA 194 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25329 # 1eyqA.198.130 read from T0506.t2k.many.frag # found chain 1eyqA in template set T0506 198 :ASRLAVLAG 1eyqA 131 :AMQKFAEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25330 # 1nofA.198.150 read from T0506.t2k.many.frag # found chain 1nofA in training set T0506 198 :ASRLAVLAG 1nofA 181 :EFKSYLKSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25331 # 1pea.199.213 read from T0506.t2k.many.frag # found chain 1pea in template set T0506 199 :SRLAVLAGA 1pea 214 :YRAIARRYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25332 # 1u7gA.199.27 read from T0506.t2k.many.frag # found chain 1u7gA in training set T0506 199 :SRLAVLAGA 1u7gA 28 :IALFYGGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25333 # 1qtwA.199.160 read from T0506.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0506)G206 (1qtwA)V168 because P (beta_P) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1qtwA 161 :LAAIIDG T0506 207 :A 1qtwA 169 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=25335 # 1n0qA.199.50 read from T0506.t2k.many.frag # found chain 1n0qA in training set T0506 199 :SRLAVLAGA 1n0qA 51 :VKLLLEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25336 # 2d81A.199.111 read from T0506.t2k.many.frag # found chain 2d81A in template set Warning: unaligning (T0506)A207 (2d81A)D140 because P (beta_P) conformation "forbidden" or filtered. T0506 199 :SRLAVLAG 2d81A 132 :LKAQLGNF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25337 # 1onwA.199.266 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 199 :SRLAVLAGA 1onwA 267 :IARAVQAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25338 # 2cbiA.199.444 read from T0506.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0506)G206 (2cbiA)S482 because D (zeta) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 2cbiA 475 :MKVFANH T0506 207 :A 2cbiA 483 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=25340 # 1ib2A.199.182 read from T0506.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)A205 (1ib2A)H1016 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1ib2A)C1017 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1ib2A)L1018 because P (beta_P) conformation "forbidden" or filtered. T0506 199 :SRLAVL 1ib2A 1010 :IQRILE Number of specific fragments extracted= 1 number of extra gaps= 1 total=25341 # 1wuiL.199.258 read from T0506.t2k.many.frag # found chain 1wuiL in template set Warning: unaligning (T0506)G206 (1wuiL)Y284 because G (3-10) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1wuiL 277 :LLVVAAA T0506 207 :A 1wuiL 285 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=25343 # 1nar.199.173 read from T0506.t2k.many.frag # found chain 1nar in training set Warning: unaligning (T0506)G206 (1nar)K181 because G (3-10) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1nar 174 :YQKLYNA T0506 207 :A 1nar 182 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=25345 # 1cl8A.199.148 read from T0506.t2k.many.frag # found chain 1cl8A in training set T0506 199 :SRLAVLAGA 1cl8A 150 :ISEIANFML Number of specific fragments extracted= 1 number of extra gaps= 0 total=25346 # 1vb3A.199.113 read from T0506.t2k.many.frag # found chain 1vb3A in template set T0506 199 :SRLAVLAGA 1vb3A 114 :MAQMLTHIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25347 # 1t0qB.199.299 read from T0506.t2k.many.frag # found chain 1t0qB in template set T0506 199 :SRLAVLAGA 1t0qB 300 :IEAYCSALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25348 # 1vd6A.199.111 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)G206 (1vd6A)L119 because G (3-10) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1vd6A 112 :ARRLAAL T0506 207 :A 1vd6A 120 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=25350 # 1j9lA.199.15 read from T0506.t2k.many.frag # found chain 1j9lA in template set T0506 199 :SRLAVLAGA 1j9lA 16 :IIVLAELLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25351 # 1hqsA.199.313 read from T0506.t2k.many.frag # found chain 1hqsA in training set T0506 199 :SRLAVLAGA 1hqsA 314 :SDALAAQVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25352 1z7xW expands to /projects/compbio/data/pdb/1z7x.pdb.gz 1z7xW:# 1z7xW.199.218 read from T0506.t2k.many.frag # adding 1z7xW to template set # found chain 1z7xW in template set T0506 199 :SRLAVLAGA 1z7xW 218 :LCGIVASKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25353 # 1f2vA.199.46 read from T0506.t2k.many.frag # found chain 1f2vA in template set Warning: unaligning (T0506)A207 (1f2vA)G46 because T (delta_L) conformation "forbidden" or filtered. T0506 199 :SRLAVLAG 1f2vA 38 :AVRMVHAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=25354 # 1qgoA.199.92 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 199 :SRLAVLAGA 1qgoA 93 :IVREVQLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25355 # 1yiiA.199.151 read from T0506.t2k.many.frag # found chain 1yiiA in training set T0506 199 :SRLAVLAGA 1yiiA 153 :LVVLLQANR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25356 # 2b6cA.199.178 read from T0506.t2k.many.frag # found chain 2b6cA in template set T0506 199 :SRLAVLAGA 2b6cA 176 :IGWSLRQYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25357 # 2bfwA.199.54 read from T0506.t2k.many.frag # found chain 2bfwA in template set T0506 199 :SRLAVLAGA 2bfwA 268 :LLKAIEILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25358 # 2amlA.199.38 read from T0506.t2k.many.frag # found chain 2amlA in template set T0506 199 :SRLAVLAGA 2amlA 27 :AEKLESLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25359 # 1khbA.199.539 read from T0506.t2k.many.frag # found chain 1khbA in template set T0506 199 :SRLAVLAGA 1khbA 537 :LEWMFNRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25360 # 1i24A.199.284 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1i24A 275 :VEIAIAN T0506 207 :A 1i24A 283 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=25362 # 1n8vA.199.80 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)A207 (1n8vA)D89 because D (zeta) conformation "forbidden" or filtered. T0506 199 :SRLAVLAG 1n8vA 81 :WRELTAKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=25363 # 1byrA.199.73 read from T0506.t2k.many.frag # found chain 1byrA in template set T0506 199 :SRLAVLAGA 1byrA 74 :MNYIANSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25364 # 1svmA.199.324 read from T0506.t2k.many.frag # found chain 1svmA in template set T0506 199 :SRLAVLAGA 1svmA 575 :LLLMLIWYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25365 # 1km4A.199.163 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)A207 (1km4A)G172 because S (epsilon) conformation "forbidden" or filtered. T0506 199 :SRLAVLAG 1km4A 164 :LSRLREII Number of specific fragments extracted= 1 number of extra gaps= 1 total=25366 # 1hq0A.199.180 read from T0506.t2k.many.frag # found chain 1hq0A in template set T0506 199 :SRLAVLAGA 1hq0A 900 :AVEVLELLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25367 # 1u7gA.200.28 read from T0506.t2k.many.frag # found chain 1u7gA in training set Warning: unaligning (T0506)G206 (1u7gA)L35 because G (3-10) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1u7gA 29 :ALFYGG T0506 207 :AK 1u7gA 36 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25369 # 2d81A.200.112 read from T0506.t2k.many.frag # found chain 2d81A in template set T0506 200 :RLAVLAGAK 2d81A 133 :KAQLGNFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25370 # 1pea.200.214 read from T0506.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0506)A207 (1pea)G222 because S (epsilon) conformation "forbidden" or filtered. T0506 200 :RLAVLAG 1pea 215 :RAIARRY T0506 208 :K 1pea 223 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=25372 # 1onwA.200.267 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 200 :RLAVLAGAK 1onwA 268 :ARAVQAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25373 # 1vb3A.200.114 read from T0506.t2k.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)K208 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. T0506 200 :RLAVLAGA 1vb3A 115 :AQMLTHIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25374 # 1i24A.200.285 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVL 1i24A 276 :EIAIA T0506 207 :AK 1i24A 283 :AK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25376 # 1nrzA.200.89 read from T0506.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)A205 (1nrzA)Q96 because G (3-10) conformation "forbidden" or filtered. T0506 200 :RLAVL 1nrzA 91 :LTMVR T0506 206 :GAK 1nrzA 97 :GVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=25378 # 1qtwA.200.161 read from T0506.t2k.many.frag # found chain 1qtwA in training set T0506 200 :RLAVLAGAK 1qtwA 162 :AAIIDGVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=25379 # 1n0qA.200.51 read from T0506.t2k.many.frag # found chain 1n0qA in training set T0506 200 :RLAVLAGAK 1n0qA 52 :KLLLEAGAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25380 # 1wuiL.200.259 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 200 :RLAVLAGAK 1wuiL 278 :LVVAAAYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25381 # 1z7xW.200.219 read from T0506.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0506)G206 (1z7xW)K225 because D (zeta) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1z7xW 219 :CGIVAS T0506 207 :AK 1z7xW 226 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25383 # 1x7dA.200.144 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)G206 (1x7dA)H151 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1x7dA)G153 because L (left) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1x7dA 145 :ALAFHK T0506 207 :A 1x7dA 152 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=25385 # 1nofA.200.152 read from T0506.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0506)G206 (1nofA)Q189 because G (3-10) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1nofA 183 :KSYLKS T0506 207 :AK 1nofA 190 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25387 # 1j9lA.200.16 read from T0506.t2k.many.frag # found chain 1j9lA in template set T0506 200 :RLAVLAGAK 1j9lA 17 :IVLAELLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25388 # 1vd6A.200.112 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)G206 (1vd6A)L119 because G (3-10) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1vd6A 113 :RRLAAL T0506 207 :AK 1vd6A 120 :RG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25390 # 1ib2A.200.183 read from T0506.t2k.many.frag # found chain 1ib2A in template set T0506 200 :RLAVLAGAK 1ib2A 1011 :QRILEHCLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25391 # 2cbiA.200.445 read from T0506.t2k.many.frag # found chain 2cbiA in template set Warning: unaligning (T0506)G206 (2cbiA)S482 because D (zeta) conformation "forbidden" or filtered. T0506 200 :RLAVLA 2cbiA 476 :KVFANH T0506 207 :AK 2cbiA 483 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25393 # 1hq0A.200.181 read from T0506.t2k.many.frag # found chain 1hq0A in template set T0506 200 :RLAVLAGAK 1hq0A 901 :VEVLELLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25394 # 1hqsA.200.314 read from T0506.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0506)G206 (1hqsA)V321 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1hqsA)G322 because T (delta_L) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1hqsA 315 :DALAAQ T0506 208 :K 1hqsA 323 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25396 # 1qgoA.200.93 read from T0506.t2k.many.frag # found chain 1qgoA in template set T0506 200 :RLAVLAGAK 1qgoA 94 :VREVQLLRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25397 # 2b6cA.200.179 read from T0506.t2k.many.frag # found chain 2b6cA in template set T0506 200 :RLAVLAGAK 2b6cA 177 :GWSLRQYSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25398 # 1cl8A.200.149 read from T0506.t2k.many.frag # found chain 1cl8A in training set T0506 200 :RLAVLAGAK 1cl8A 151 :SEIANFMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25399 # 2bfwA.200.55 read from T0506.t2k.many.frag # found chain 2bfwA in template set T0506 200 :RLAVLAGAK 2bfwA 269 :LKAIEILSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25400 2d0oA expands to /projects/compbio/data/pdb/2d0o.pdb.gz 2d0oA:# 2d0oA.200.395 read from T0506.t2k.many.frag # adding 2d0oA to template set # found chain 2d0oA in template set T0506 200 :RLAVLAGAK 2d0oA 396 :ILGALTTPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25401 1r9fA expands to /projects/compbio/data/pdb/1r9f.pdb.gz 1r9fA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 677, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 679, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 784, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 846, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 848, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 850, because occupancy 0.500 <= existing 0.500 in 1r9fA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 919, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 921, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 923, because occupancy 0.500 <= existing 0.500 in 1r9fA Skipped atom 925, because occupancy 0.500 <= existing 0.500 in 1r9fA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1r9fA.200.73 read from T0506.t2k.many.frag # adding 1r9fA to template set # found chain 1r9fA in template set Warning: unaligning (T0506)K208 (1r9fA)G104 because Y (epsilon') conformation "forbidden" or filtered. T0506 200 :RLAVLAGA 1r9fA 96 :NYAASRFF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25402 # 1f2vA.200.47 read from T0506.t2k.many.frag # found chain 1f2vA in template set Warning: unaligning (T0506)G206 (1f2vA)C45 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1f2vA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1f2vA)S47 because D (zeta) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1f2vA 39 :VRMVHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=25403 # 1khbA.200.540 read from T0506.t2k.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)K208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1khbA)S549 T0506 200 :RLAVLAGA 1khbA 538 :EWMFNRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25404 # 2b0tA.200.695 read from T0506.t2k.many.frag # found chain 2b0tA in template set Warning: unaligning (T0506)A207 (2b0tA)G703 because T (delta_L) conformation "forbidden" or filtered. T0506 200 :RLAVLAG 2b0tA 696 :AALLAVQ T0506 208 :K 2b0tA 704 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25406 # 1svmA.200.325 read from T0506.t2k.many.frag # found chain 1svmA in template set Warning: unaligning (T0506)K208 (1svmA)P584 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVLAGA 1svmA 576 :LLMLIWYR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25407 # 1nar.200.174 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 200 :RLAVLAGAK 1nar 175 :QKLYNAKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25408 # 1qtwA.201.162 read from T0506.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0506)G206 (1qtwA)V168 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLA 1qtwA 163 :AIIDG T0506 207 :AKT 1qtwA 169 :EDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25410 # 1pea.201.215 read from T0506.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0506)A207 (1pea)G222 because S (epsilon) conformation "forbidden" or filtered. T0506 201 :LAVLAG 1pea 216 :AIARRY T0506 208 :KT 1pea 223 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25412 # 2d81A.201.113 read from T0506.t2k.many.frag # found chain 2d81A in template set T0506 201 :LAVLAGAKT 2d81A 134 :AQLGNFDNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25413 # 1km4A.201.165 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)A207 (1km4A)G172 because S (epsilon) conformation "forbidden" or filtered. T0506 201 :LAVLAG 1km4A 166 :RLREII T0506 208 :KT 1km4A 173 :QD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25415 # 1vd6A.201.113 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)G206 (1vd6A)L119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1vd6A)G121 because T (delta_L) conformation "forbidden" or filtered. T0506 201 :LAVLA 1vd6A 114 :RLAAL T0506 207 :A 1vd6A 120 :R T0506 209 :T 1vd6A 122 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=25418 # 1onwA.201.268 read from T0506.t2k.many.frag # found chain 1onwA in training set T0506 201 :LAVLAGAKT 1onwA 269 :RAVQAGIPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25419 # 1wuiL.201.260 read from T0506.t2k.many.frag # found chain 1wuiL in template set T0506 201 :LAVLAGAKT 1wuiL 279 :VVAAAYKDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25420 # 1vb3A.201.115 read from T0506.t2k.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)K208 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. T0506 201 :LAVLAGA 1vb3A 116 :QMLTHIA T0506 209 :T 1vb3A 124 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=25422 # 1x7dA.201.145 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)G206 (1x7dA)H151 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVLA 1x7dA 146 :LAFHK T0506 207 :AKT 1x7dA 152 :LGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25424 # 1i24A.201.286 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1i24A)A283 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVL 1i24A 277 :IAIA T0506 206 :G 1i24A 282 :P T0506 208 :KT 1i24A 284 :KA Number of specific fragments extracted= 3 number of extra gaps= 2 total=25427 # 1nrzA.201.90 read from T0506.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)A205 (1nrzA)Q96 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVL 1nrzA 92 :TMVR T0506 206 :GAKT 1nrzA 97 :GVQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25429 # 1lam.201.433 read from T0506.t2k.many.frag # found chain 1lam in training set Warning: unaligning (T0506)G206 (1lam)F439 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVLA 1lam 434 :AFLKE T0506 207 :AKT 1lam 440 :VTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25431 # 1u7gA.201.29 read from T0506.t2k.many.frag # found chain 1u7gA in training set Warning: unaligning (T0506)G206 (1u7gA)L35 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVLA 1u7gA 30 :LFYGG T0506 207 :AKT 1u7gA 36 :IRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25433 # 1r9fA.201.74 read from T0506.t2k.many.frag # found chain 1r9fA in template set Warning: unaligning (T0506)A207 (1r9fA)F103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1r9fA)G104 because Y (epsilon') conformation "forbidden" or filtered. T0506 201 :LAVLAG 1r9fA 97 :YAASRF T0506 209 :T 1r9fA 105 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=25435 # 2az4A.201.201 read from T0506.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0506)G206 (2az4A)A207 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (2az4A)H209 because L (left) conformation "forbidden" or filtered. T0506 201 :LAVLA 2az4A 202 :AFCEK T0506 207 :A 2az4A 208 :K T0506 209 :T 2az4A 210 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=25438 # 1j9lA.201.17 read from T0506.t2k.many.frag # found chain 1j9lA in template set T0506 201 :LAVLAGAKT 1j9lA 18 :VLAELLSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25439 1a8y expands to /projects/compbio/data/pdb/1a8y.pdb.gz 1a8y:Warning: there is no chain 1a8y will retry with 1a8yA # 1a8y.201.270 read from T0506.t2k.many.frag # adding 1a8y to template set # found chain 1a8y in template set T0506 201 :LAVLAGAKT 1a8y 271 :SVAQDNTDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25440 # 1mtpA.201.69 read from T0506.t2k.many.frag # found chain 1mtpA in training set T0506 201 :LAVLAGAKT 1mtpA 72 :ALDRAVTDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25441 # 1hqsA.201.315 read from T0506.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0506)G206 (1hqsA)V321 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1hqsA)G322 because T (delta_L) conformation "forbidden" or filtered. T0506 201 :LAVLA 1hqsA 316 :ALAAQ T0506 208 :KT 1hqsA 323 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25443 # 1khbA.201.541 read from T0506.t2k.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)K208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1khbA)S549 T0506 201 :LAVLAGA 1khbA 539 :WMFNRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25444 # 1nar.201.175 read from T0506.t2k.many.frag # found chain 1nar in training set Warning: unaligning (T0506)G206 (1nar)K181 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVLA 1nar 176 :KLYNA T0506 207 :AKT 1nar 182 :KDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25446 # 1cl8A.201.150 read from T0506.t2k.many.frag # found chain 1cl8A in training set Warning: unaligning (T0506)G206 (1cl8A)M157 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVLA 1cl8A 152 :EIANF T0506 207 :AKT 1cl8A 158 :LSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25448 # 1ok7A.201.201 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)K208 (1ok7A)G209 because T (delta_L) conformation "forbidden" or filtered. T0506 201 :LAVLAGA 1ok7A 202 :ELMRMLD T0506 209 :T 1ok7A 210 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=25450 # 1f2vA.201.48 read from T0506.t2k.many.frag # found chain 1f2vA in template set T0506 201 :LAVLAGAKT 1f2vA 40 :RMVHACGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25451 # 1svmA.201.326 read from T0506.t2k.many.frag # found chain 1svmA in template set Warning: unaligning (T0506)K208 (1svmA)P584 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLAGA 1svmA 577 :LMLIWYR T0506 209 :T 1svmA 585 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=25453 # 1n8vA.201.82 read from T0506.t2k.many.frag # found chain 1n8vA in training set Warning: unaligning (T0506)T209 (1n8vA)T91 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVLAGAK 1n8vA 83 :ELTAKYDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=25454 # 1z7xW.201.220 read from T0506.t2k.many.frag # found chain 1z7xW in template set Warning: unaligning (T0506)G206 (1z7xW)K225 because D (zeta) conformation "forbidden" or filtered. T0506 201 :LAVLA 1z7xW 220 :GIVAS T0506 207 :AKT 1z7xW 226 :ASL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25456 # 1ib2A.201.184 read from T0506.t2k.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)G206 (1ib2A)C1017 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLA 1ib2A 1012 :RILEH T0506 207 :AKT 1ib2A 1018 :LPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25458 # 2fiyA.201.104 read from T0506.t2k.many.frag # found chain 2fiyA in template set Warning: unaligning (T0506)G206 (2fiyA)Y110 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (2fiyA)A112 because D (zeta) conformation "forbidden" or filtered. T0506 201 :LAVLA 2fiyA 105 :ALLAG T0506 207 :A 2fiyA 111 :P T0506 209 :T 2fiyA 113 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=25461 # 2b0tA.201.696 read from T0506.t2k.many.frag # found chain 2b0tA in template set T0506 201 :LAVLAGAKT 2b0tA 697 :ALLAVQGGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25462 # 1pea.202.216 read from T0506.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0506)A207 (1pea)G222 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)T209 (1pea)G224 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1pea)R225 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAG 1pea 217 :IARRY T0506 208 :K 1pea 223 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=25464 # 1vd6A.202.114 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)G206 (1vd6A)L119 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVLA 1vd6A 115 :LAAL T0506 207 :AKTG 1vd6A 120 :RGRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25466 # 1x7dA.202.146 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)G206 (1x7dA)H151 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1x7dA)L152 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1x7dA)G153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1x7dA)E155 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVLA 1x7dA 147 :AFHK T0506 209 :T 1x7dA 154 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=25468 # 1vb3A.202.116 read from T0506.t2k.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)K208 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1vb3A 117 :MLTHIA T0506 209 :TG 1vb3A 124 :DK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25470 # 1km4A.202.166 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)G210 (1km4A)S175 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAGAKT 1km4A 167 :LREIIGQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=25471 # 1lam.202.434 read from T0506.t2k.many.frag # found chain 1lam in training set Warning: unaligning (T0506)G206 (1lam)F439 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVLA 1lam 435 :FLKE T0506 207 :AKTG 1lam 440 :VTHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25473 # 1a8y.202.271 read from T0506.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0506)G206 (1a8y)N276 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVLA 1a8y 272 :VAQD T0506 207 :AKTG 1a8y 277 :TDNP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25475 # 1i24A.202.287 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. T0506 202 :AVL 1i24A 278 :AIA T0506 206 :GAKTG 1i24A 282 :PAKAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25477 # 2d81A.202.114 read from T0506.t2k.many.frag # found chain 2d81A in template set Warning: unaligning (T0506)G206 (2d81A)F139 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (2d81A)D140 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLA 2d81A 135 :QLGN T0506 208 :KTG 2d81A 141 :NSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25479 # 1qtwA.202.163 read from T0506.t2k.many.frag # found chain 1qtwA in training set T0506 202 :AVLAGAKTG 1qtwA 164 :IIDGVEDKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25480 # 1onwA.202.269 read from T0506.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)A207 (1onwA)I275 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1onwA)P276 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAG 1onwA 270 :AVQAG T0506 209 :TG 1onwA 277 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25482 # 1svmA.202.327 read from T0506.t2k.many.frag # found chain 1svmA in template set Warning: unaligning (T0506)K208 (1svmA)P584 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1svmA 578 :MLIWYR T0506 209 :TG 1svmA 585 :VA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25484 # 2az4A.202.202 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 202 :AVLAGAKTG 2az4A 203 :FCEKAKHTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25485 # 1r9fA.202.75 read from T0506.t2k.many.frag # found chain 1r9fA in template set Warning: unaligning (T0506)G206 (1r9fA)F102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1r9fA)F103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1r9fA)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1r9fA)D106 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLA 1r9fA 98 :AASR T0506 209 :T 1r9fA 105 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=25487 # 1nrzA.202.91 read from T0506.t2k.many.frag # found chain 1nrzA in training set T0506 202 :AVLAGAKTG 1nrzA 93 :MVRQGVQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25488 # 1j9lA.202.18 read from T0506.t2k.many.frag # found chain 1j9lA in template set T0506 202 :AVLAGAKTG 1j9lA 19 :LAELLSEEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25489 # 1nar.202.176 read from T0506.t2k.many.frag # found chain 1nar in training set Warning: unaligning (T0506)G210 (1nar)I185 because N (gamma') conformation "forbidden" or filtered. T0506 202 :AVLAGAKT 1nar 177 :LYNAKKDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=25490 # 1mtpA.202.70 read from T0506.t2k.many.frag # found chain 1mtpA in training set T0506 202 :AVLAGAKTG 1mtpA 73 :LDRAVTDSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25491 # 1hqsA.202.316 read from T0506.t2k.many.frag # found chain 1hqsA in training set Warning: unaligning (T0506)A207 (1hqsA)G322 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1hqsA)G323 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1hqsA)G325 because H (helix) conformation "forbidden" or filtered. T0506 202 :AVLAG 1hqsA 317 :LAAQV T0506 209 :T 1hqsA 324 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=25493 # 1ok7A.202.202 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)K208 (1ok7A)G209 because T (delta_L) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1ok7A 203 :LMRMLD T0506 209 :TG 1ok7A 210 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25495 # 2fckA.202.124 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVLAGA 2fckA 122 :FCFERL T0506 209 :T 2fckA 129 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=25497 # 1xewY.202.108 read from T0506.t2k.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)G210 (1xewY)S1122 because E (beta_S) conformation "forbidden" or filtered. T0506 202 :AVLAGAKT 1xewY 1114 :LIKESSKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=25498 # 1khbA.202.542 read from T0506.t2k.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)K208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1khbA)S549 T0506 202 :AVLAGA 1khbA 540 :MFNRID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25499 # 1hq0A.202.183 read from T0506.t2k.many.frag # found chain 1hq0A in template set T0506 202 :AVLAGAKTG 1hq0A 903 :VLELLTKEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25500 # 1oqvA.202.115 read from T0506.t2k.many.frag # found chain 1oqvA in training set T0506 202 :AVLAGAKTG 1oqvA 123 :LITSVGDMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25501 # 1jmkC.202.62 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)G210 (1jmkC)G72 because S (epsilon) conformation "forbidden" or filtered. T0506 202 :AVLAGAKT 1jmkC 64 :LIQKLQPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=25502 # 1o7jA.202.103 read from T0506.t2k.many.frag # found chain 1o7jA in training set Warning: unaligning (T0506)G206 (1o7jA)T108 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVLA 1o7jA 104 :FLHL T0506 207 :AKTG 1o7jA 109 :VKSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25504 1yt3A expands to /projects/compbio/data/pdb/1yt3.pdb.gz 1yt3A:Skipped atom 44, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 46, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 48, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 57, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 218, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 220, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 222, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 426, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 428, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 430, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 522, because occupancy 0.300 <= existing 0.650 in 1yt3A Skipped atom 593, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 595, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 670, because occupancy 0.200 <= existing 0.800 in 1yt3A Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 713, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 769, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 771, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 773, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 775, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 1130, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 1132, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 1134, because occupancy 0.400 <= existing 0.600 in 1yt3A Skipped atom 1751, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 1965, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 1967, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 1969, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 1971, because occupancy 0.300 <= existing 0.700 in 1yt3A Skipped atom 2060, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 2062, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 2064, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 2125, because occupancy 0.350 <= existing 0.650 in 1yt3A Skipped atom 2162, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 2180, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 2441, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 2443, because occupancy 0.500 <= existing 0.500 in 1yt3A Skipped atom 2518, because occupancy 0.500 <= existing 0.500 in 1yt3A # 1yt3A.202.336 read from T0506.t2k.many.frag # adding 1yt3A to template set # found chain 1yt3A in template set T0506 202 :AVLAGAKTG 1yt3A 337 :LLNWHWKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25505 # 1m0wA.202.239 read from T0506.t2k.many.frag # found chain 1m0wA in training set T0506 202 :AVLAGAKTG 1m0wA 240 :NLLEKFGTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25506 1f3vA expands to /projects/compbio/data/pdb/1f3v.pdb.gz 1f3vA:# 1f3vA.202.101 read from T0506.t2k.many.frag # adding 1f3vA to template set # found chain 1f3vA in template set Warning: unaligning (T0506)K208 (1f3vA)A108 because L (left) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1f3vA 102 :SLAAAL T0506 209 :TG 1f3vA 109 :QH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25508 # 1vb3A.203.117 read from T0506.t2k.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)K208 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1vb3A)K125 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VLAGA 1vb3A 118 :LTHIA T0506 209 :T 1vb3A 124 :D T0506 211 :R 1vb3A 126 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=25511 # 1vd6A.203.115 read from T0506.t2k.many.frag # found chain 1vd6A in template set T0506 203 :VLAGAKTGR 1vd6A 116 :AALLRGREG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25512 # 1x7dA.203.147 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)G206 (1x7dA)H151 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1x7dA)G153 because L (left) conformation "forbidden" or filtered. T0506 203 :VLA 1x7dA 148 :FHK T0506 207 :A 1x7dA 152 :L T0506 209 :TGR 1x7dA 154 :IEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=25515 # 1km4A.203.167 read from T0506.t2k.many.frag # found chain 1km4A in training set T0506 203 :VLAGAKTGR 1km4A 168 :REIIGQDSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25516 # 1pea.203.217 read from T0506.t2k.many.frag # found chain 1pea in template set Warning: unaligning (T0506)A207 (1pea)G222 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)T209 (1pea)G224 because S (epsilon) conformation "forbidden" or filtered. T0506 203 :VLAG 1pea 218 :ARRY T0506 208 :K 1pea 223 :D T0506 210 :GR 1pea 225 :RR Number of specific fragments extracted= 3 number of extra gaps= 2 total=25519 # 1a8y.203.272 read from T0506.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0506)G206 (1a8y)N276 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLA 1a8y 273 :AQD T0506 207 :AKTGR 1a8y 277 :TDNPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25521 # 1lam.203.435 read from T0506.t2k.many.frag # found chain 1lam in training set T0506 203 :VLAGAKTGR 1lam 436 :LKEFVTHPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=25522 # 1j9lA.203.19 read from T0506.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)G210 (1j9lA)H27 because E (beta_S) conformation "forbidden" or filtered. T0506 203 :VLAGAKT 1j9lA 20 :AELLSEE T0506 211 :R 1j9lA 28 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=25524 # 2a3nA.203.211 read from T0506.t2k.many.frag # found chain 2a3nA in template set T0506 203 :VLAGAKTGR 2a3nA 200 :ASRYHNSDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=25525 # 1i24A.203.288 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1i24A)A283 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VL 1i24A 279 :IA T0506 208 :KTGR 1i24A 284 :KAGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=25527 # 2d81A.203.115 read from T0506.t2k.many.frag # found chain 2d81A in template set Warning: unaligning (T0506)G206 (2d81A)F139 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLA 2d81A 136 :LGN T0506 207 :AKTGR 2d81A 140 :DNSAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25529 # 1lbu.203.121 read from T0506.t2k.many.frag # found chain 1lbu in training set Warning: unaligning (T0506)K208 (1lbu)G127 because T (delta_L) conformation "forbidden" or filtered. T0506 203 :VLAGA 1lbu 122 :MRHAM T0506 209 :TGR 1lbu 128 :DKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25531 # 1v84A.203.24 read from T0506.t2k.many.frag # found chain 1v84A in template set Warning: unaligning (T0506)G210 (1v84A)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1v84A)N114 because L (left) conformation "forbidden" or filtered. T0506 203 :VLAGAKT 1v84A 106 :ANTLLHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25532 # 1moq.203.217 read from T0506.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0506)G210 (1moq)H465 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLAGAKT 1moq 458 :AEDFSDK T0506 211 :R 1moq 466 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=25534 # 1jmkC.203.63 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)A207 (1jmkC)Q69 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1jmkC)G72 because S (epsilon) conformation "forbidden" or filtered. T0506 203 :VLAG 1jmkC 65 :IQKL T0506 208 :KT 1jmkC 70 :PE T0506 211 :R 1jmkC 73 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=25537 # 1f3vA.203.102 read from T0506.t2k.many.frag # found chain 1f3vA in template set Warning: unaligning (T0506)K208 (1f3vA)A108 because L (left) conformation "forbidden" or filtered. T0506 203 :VLAGA 1f3vA 103 :LAAAL T0506 209 :TGR 1f3vA 109 :QHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25539 # 2az4A.203.203 read from T0506.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0506)G206 (2az4A)A207 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (2az4A)H209 because L (left) conformation "forbidden" or filtered. T0506 203 :VLA 2az4A 204 :CEK T0506 207 :A 2az4A 208 :K T0506 209 :TGR 2az4A 210 :TEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=25542 1pzxA expands to /projects/compbio/data/pdb/1pzx.pdb.gz 1pzxA:# 1pzxA.203.250 read from T0506.t2k.many.frag # adding 1pzxA to template set # found chain 1pzxA in template set T0506 203 :VLAGAKTGR 1pzxA 249 :IEETHGCTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25543 # 2axtB.203.154 read from T0506.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0506)R211 (2axtB)G163 because Y (epsilon') conformation "forbidden" or filtered. T0506 203 :VLAGAKTG 2axtB 155 :AFHLTGLF Number of specific fragments extracted= 1 number of extra gaps= 1 total=25544 # 1oqvA.203.116 read from T0506.t2k.many.frag # found chain 1oqvA in training set T0506 203 :VLAGAKTGR 1oqvA 124 :ITSVGDMFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25545 # 2fckA.203.125 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLAGA 2fckA 123 :CFERL T0506 209 :T 2fckA 129 :L T0506 211 :R 2fckA 131 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=25548 1zbsA expands to /projects/compbio/data/pdb/1zbs.pdb.gz 1zbsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zbsA.203.101 read from T0506.t2k.many.frag # adding 1zbsA to template set # found chain 1zbsA in template set T0506 203 :VLAGAKTGR 1zbsA 102 :ARALCGDSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25549 1zuwA expands to /projects/compbio/data/pdb/1zuw.pdb.gz 1zuwA:# 1zuwA.203.103 read from T0506.t2k.many.frag # adding 1zuwA to template set # found chain 1zuwA in template set T0506 203 :VLAGAKTGR 1zuwA 104 :AIKVTDNQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25550 1zz1A expands to /projects/compbio/data/pdb/1zz1.pdb.gz 1zz1A:Skipped atom 191, because occupancy 0.350 <= existing 0.650 in 1zz1A Skipped atom 193, because occupancy 0.350 <= existing 0.650 in 1zz1A Skipped atom 195, because occupancy 0.350 <= existing 0.650 in 1zz1A Skipped atom 1571, because occupancy 0.350 <= existing 0.650 in 1zz1A Skipped atom 1573, because occupancy 0.350 <= existing 0.650 in 1zz1A Skipped atom 1575, because occupancy 0.350 <= existing 0.650 in 1zz1A Skipped atom 1577, because occupancy 0.350 <= existing 0.650 in 1zz1A # 1zz1A.203.164 read from T0506.t2k.many.frag # adding 1zz1A to template set # found chain 1zz1A in template set T0506 203 :VLAGAKTGR 1zz1A 165 :ARAVLGMER Number of specific fragments extracted= 1 number of extra gaps= 0 total=25551 # 1nrzA.203.92 read from T0506.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)K208 (1nrzA)Q99 because N (gamma') conformation "forbidden" or filtered. T0506 203 :VLAGA 1nrzA 94 :VRQGV T0506 209 :TGR 1nrzA 100 :IAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25553 # 1k8qA.203.137 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)R211 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. T0506 203 :VLAGAKTG 1k8qA 138 :ILKKTGQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=25554 # 1qtwA.203.164 read from T0506.t2k.many.frag # found chain 1qtwA in training set Warning: unaligning (T0506)G206 (1qtwA)V168 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VLA 1qtwA 165 :IDG T0506 207 :AKTGR 1qtwA 169 :EDKSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25556 # 1hq0A.203.184 read from T0506.t2k.many.frag # found chain 1hq0A in template set Warning: unaligning (T0506)K208 (1hq0A)K909 because L (left) conformation "forbidden" or filtered. T0506 203 :VLAGA 1hq0A 904 :LELLT T0506 209 :TGR 1hq0A 910 :EPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25558 # 1sr9A.203.154 read from T0506.t2k.many.frag # found chain 1sr9A in template set T0506 203 :VLAGAKTGR 1sr9A 155 :FQACSGAPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25559 # 1r9fA.203.76 read from T0506.t2k.many.frag # found chain 1r9fA in template set Warning: unaligning (T0506)G206 (1r9fA)F102 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1r9fA)G104 because Y (epsilon') conformation "forbidden" or filtered. T0506 203 :VLA 1r9fA 99 :ASR T0506 207 :A 1r9fA 103 :F T0506 209 :TGR 1r9fA 105 :FDQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=25562 # 1vd6A.204.116 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)A207 (1vd6A)R120 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1vd6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1vd6A)G124 because T (delta_L) conformation "forbidden" or filtered. T0506 204 :LAG 1vd6A 117 :ALL T0506 209 :TG 1vd6A 122 :RE T0506 212 :W 1vd6A 125 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=25565 # 1vb3A.204.118 read from T0506.t2k.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)K208 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1vb3A)K125 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAGA 1vb3A 119 :THIA T0506 209 :T 1vb3A 124 :D T0506 211 :RW 1vb3A 126 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=25568 # 1x7dA.204.148 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)G206 (1x7dA)H151 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LA 1x7dA 149 :HK T0506 207 :AKTGRW 1x7dA 152 :LGIEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25570 # 1lam.204.436 read from T0506.t2k.many.frag # found chain 1lam in training set T0506 204 :LAGAKTGRW 1lam 437 :KEFVTHPKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25571 # 1a8y.204.273 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 204 :LAGAKTGRW 1a8y 274 :QDNTDNPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25572 # 2a3nA.204.212 read from T0506.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0506)G206 (2a3nA)Y203 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LA 2a3nA 201 :SR T0506 207 :AKTGRW 2a3nA 204 :HNSDYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=25574 # 1i24A.204.289 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :L 1i24A 280 :A T0506 207 :AKTGRW 1i24A 283 :AKAGEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25576 # 1lbu.204.122 read from T0506.t2k.many.frag # found chain 1lbu in training set Warning: unaligning (T0506)K208 (1lbu)G127 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T209 (1lbu)D128 because L (left) conformation "forbidden" or filtered. T0506 204 :LAGA 1lbu 123 :RHAM T0506 210 :GRW 1lbu 129 :KPI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25578 # 1v84A.204.25 read from T0506.t2k.many.frag # found chain 1v84A in template set Warning: unaligning (T0506)G210 (1v84A)P113 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAGAKT 1v84A 107 :NTLLHV T0506 211 :RW 1v84A 114 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25580 # 1j9lA.204.20 read from T0506.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)G210 (1j9lA)H27 because E (beta_S) conformation "forbidden" or filtered. T0506 204 :LAGAKT 1j9lA 21 :ELLSEE T0506 211 :RW 1j9lA 28 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25582 # 1nrzA.204.93 read from T0506.t2k.many.frag # found chain 1nrzA in training set T0506 204 :LAGAKTGRW 1nrzA 95 :RQGVQIATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25583 # 1km4A.204.168 read from T0506.t2k.many.frag # found chain 1km4A in training set T0506 204 :LAGAKTGRW 1km4A 169 :EIIGQDSFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25584 # 1k8qA.204.138 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)K208 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1k8qA)K146 because Y (epsilon') conformation "forbidden" or filtered. T0506 204 :LAGA 1k8qA 139 :LKKT T0506 209 :TG 1k8qA 144 :QD T0506 212 :W 1k8qA 147 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=25587 # 2fckA.204.126 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. T0506 204 :LAGA 2fckA 124 :FERL T0506 209 :TGRW 2fckA 129 :LTRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25589 2fqxA expands to /projects/compbio/data/pdb/2fqx.pdb.gz 2fqxA:Skipped atom 512, because occupancy 0.450 <= existing 0.550 in 2fqxA Skipped atom 514, because occupancy 0.450 <= existing 0.550 in 2fqxA Skipped atom 516, because occupancy 0.450 <= existing 0.550 in 2fqxA Skipped atom 518, because occupancy 0.450 <= existing 0.550 in 2fqxA Skipped atom 520, because occupancy 0.450 <= existing 0.550 in 2fqxA Skipped atom 522, because occupancy 0.450 <= existing 0.550 in 2fqxA Skipped atom 767, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 769, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 771, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 773, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 775, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 777, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 779, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 781, because occupancy 0.410 <= existing 0.590 in 2fqxA Skipped atom 1053, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1055, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1057, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1059, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1061, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1063, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1065, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1067, because occupancy 0.470 <= existing 0.530 in 2fqxA Skipped atom 1073, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1075, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1077, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1079, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1081, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1083, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1085, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1087, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1306, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1308, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1310, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1312, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1314, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1316, because occupancy 0.460 <= existing 0.540 in 2fqxA Skipped atom 1945, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1947, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1949, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1951, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1953, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1955, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1957, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1959, because occupancy 0.480 <= existing 0.520 in 2fqxA Skipped atom 1976, because occupancy 0.490 <= existing 0.510 in 2fqxA Skipped atom 1978, because occupancy 0.490 <= existing 0.510 in 2fqxA Skipped atom 1980, because occupancy 0.490 <= existing 0.510 in 2fqxA Skipped atom 1982, because occupancy 0.490 <= existing 0.510 in 2fqxA Skipped atom 1984, because occupancy 0.490 <= existing 0.510 in 2fqxA Skipped atom 1986, because occupancy 0.490 <= existing 0.510 in 2fqxA Skipped atom 1988, because occupancy 0.490 <= existing 0.510 in 2fqxA Skipped atom 1990, because occupancy 0.490 <= existing 0.510 in 2fqxA # 2fqxA.204.208 read from T0506.t2k.many.frag # adding 2fqxA to template set # found chain 2fqxA in template set Warning: unaligning (T0506)K208 (2fqxA)N228 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T209 (2fqxA)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2fqxA)Q230 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAGA 2fqxA 224 :DRRL T0506 211 :RW 2fqxA 231 :DV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25591 # 1moq.204.218 read from T0506.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0506)G210 (1moq)H465 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1moq)A467 because Y (epsilon') conformation "forbidden" or filtered. T0506 204 :LAGAKT 1moq 459 :EDFSDK T0506 211 :R 1moq 466 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=25593 # 1pg4A.204.536 read from T0506.t2k.many.frag # found chain 1pg4A in training set Warning: unaligning (T0506)R211 (1pg4A)E544 because Y (epsilon') conformation "forbidden" or filtered. T0506 204 :LAGAKTG 1pg4A 537 :VAHPKIA T0506 212 :W 1pg4A 545 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=25595 # 1f3vA.204.103 read from T0506.t2k.many.frag # found chain 1f3vA in template set Warning: unaligning (T0506)K208 (1f3vA)A108 because L (left) conformation "forbidden" or filtered. T0506 204 :LAGA 1f3vA 104 :AAAL T0506 209 :TGRW 1f3vA 109 :QHSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25597 # 1zz1A.204.165 read from T0506.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0506)K208 (1zz1A)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 204 :LAGA 1zz1A 166 :RAVL T0506 209 :TGRW 1zz1A 171 :MERV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25599 2d1pB expands to /projects/compbio/data/pdb/2d1p.pdb.gz 2d1pB:# 2d1pB.204.26 read from T0506.t2k.many.frag # adding 2d1pB to template set # found chain 2d1pB in template set Warning: unaligning (T0506)G210 (2d1pB)D33 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LAGAKT 2d1pB 27 :ATSALT T0506 211 :RW 2d1pB 34 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25601 # 2d81A.204.116 read from T0506.t2k.many.frag # found chain 2d81A in template set Warning: unaligning (T0506)G206 (2d81A)F139 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LA 2d81A 137 :GN T0506 207 :AKTGRW 2d81A 140 :DNSANV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25603 # 1jmkC.204.64 read from T0506.t2k.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)A207 (1jmkC)Q69 because D (zeta) conformation "forbidden" or filtered. T0506 204 :LAG 1jmkC 66 :QKL T0506 208 :KTGRW 1jmkC 70 :PEGPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25605 # 1pzxA.204.251 read from T0506.t2k.many.frag # found chain 1pzxA in template set Warning: unaligning (T0506)K208 (1pzxA)G254 because L (left) conformation "forbidden" or filtered. T0506 204 :LAGA 1pzxA 250 :EETH T0506 209 :TGRW 1pzxA 255 :CTRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25607 # 1zuwA.204.104 read from T0506.t2k.many.frag # found chain 1zuwA in template set Warning: unaligning (T0506)A207 (1zuwA)T108 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAG 1zuwA 105 :IKV T0506 208 :KTGRW 1zuwA 109 :DNQHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25609 # 1uarA.204.99 read from T0506.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)K208 (1uarA)G104 because T (delta_L) conformation "forbidden" or filtered. T0506 204 :LAGA 1uarA 100 :FKYN T0506 209 :TGRW 1uarA 105 :HKDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25611 # 8abp.204.217 read from T0506.t2k.many.frag # found chain 8abp in training set T0506 204 :LAGAKTGRW 8abp 218 :GQGFKAADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25612 # 2axtB.204.155 read from T0506.t2k.many.frag # found chain 2axtB in template set Warning: unaligning (T0506)K208 (2axtB)G160 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2axtB)F162 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (2axtB)G163 because Y (epsilon') conformation "forbidden" or filtered. T0506 204 :LAGA 2axtB 156 :FHLT T0506 209 :T 2axtB 161 :L T0506 212 :W 2axtB 164 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=25615 # 1pea.204.218 read from T0506.t2k.many.frag # found chain 1pea in template set T0506 204 :LAGAKTGRW 1pea 219 :RRYGDGRRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25616 2b9eA expands to /projects/compbio/data/pdb/2b9e.pdb.gz 2b9eA:# 2b9eA.204.119 read from T0506.t2k.many.frag # adding 2b9eA to template set # found chain 2b9eA in template set Warning: unaligning (T0506)A207 (2b9eA)K249 because L (left) conformation "forbidden" or filtered. T0506 204 :LAG 2b9eA 246 :ALL T0506 208 :KTGRW 2b9eA 250 :NQGKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25618 # 1zbsA.204.102 read from T0506.t2k.many.frag # found chain 1zbsA in template set Warning: unaligning (T0506)W212 (1zbsA)G111 because Y (epsilon') conformation "forbidden" or filtered. T0506 204 :LAGAKTGR 1zbsA 103 :RALCGDSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=25619 # 1i24A.205.290 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1i24A)K284 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :A 1i24A 283 :A T0506 209 :TGRWK 1i24A 285 :AGEFR Number of specific fragments extracted= 2 number of extra gaps= 2 total=25621 # 1nrzA.205.94 read from T0506.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)T209 (1nrzA)I100 because D (zeta) conformation "forbidden" or filtered. T0506 205 :AGAK 1nrzA 96 :QGVQ T0506 210 :GRWK 1nrzA 101 :ATLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=25623 # 1vd6A.205.117 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)K208 (1vd6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1vd6A)E123 because E (beta_S) conformation "forbidden" or filtered. T0506 205 :AGA 1vd6A 118 :LLR T0506 209 :T 1vd6A 122 :R T0506 211 :RWK 1vd6A 124 :GVW Number of specific fragments extracted= 3 number of extra gaps= 2 total=25626 # 1a8y.205.274 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 205 :AGAKTGRWK 1a8y 275 :DNTDNPDLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25627 # 1x7dA.205.149 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)K208 (1x7dA)G153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1x7dA)E155 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1x7dA)V158 because E (beta_S) conformation "forbidden" or filtered. T0506 205 :AGA 1x7dA 150 :KHL T0506 209 :T 1x7dA 154 :I T0506 211 :RW 1x7dA 156 :EI Number of specific fragments extracted= 3 number of extra gaps= 3 total=25630 # 1lam.205.437 read from T0506.t2k.many.frag # found chain 1lam in training set Warning: unaligning (T0506)K213 (1lam)A446 because E (beta_S) conformation "forbidden" or filtered. T0506 205 :AGAKTGRW 1lam 438 :EFVTHPKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=25631 # 2fckA.205.127 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. T0506 205 :AGA 2fckA 125 :ERL T0506 209 :T 2fckA 129 :L T0506 211 :RWK 2fckA 131 :RLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=25634 # 1vb3A.205.119 read from T0506.t2k.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)K208 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. T0506 205 :AGA 1vb3A 120 :HIA T0506 209 :TGRWK 1vb3A 124 :DKPVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25636 # 2a3nA.205.213 read from T0506.t2k.many.frag # found chain 2a3nA in template set Warning: unaligning (T0506)G206 (2a3nA)Y203 because G (3-10) conformation "forbidden" or filtered. T0506 205 :A 2a3nA 202 :R T0506 207 :AKTGRWK 2a3nA 204 :HNSDYMM Number of specific fragments extracted= 2 number of extra gaps= 1 total=25638 # 1j9lA.205.21 read from T0506.t2k.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)G210 (1j9lA)H27 because E (beta_S) conformation "forbidden" or filtered. T0506 205 :AGAKT 1j9lA 22 :LLSEE T0506 211 :RWK 1j9lA 28 :EVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25640 # 1v84A.205.26 read from T0506.t2k.many.frag # found chain 1v84A in template set Warning: unaligning (T0506)R211 (1v84A)N114 because L (left) conformation "forbidden" or filtered. T0506 205 :AGAKTG 1v84A 108 :TLLHVP T0506 212 :WK 1v84A 115 :LH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25642 # 1lbu.205.123 read from T0506.t2k.many.frag # found chain 1lbu in training set Warning: unaligning (T0506)A207 (1lbu)M126 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1lbu)G127 because T (delta_L) conformation "forbidden" or filtered. T0506 205 :AG 1lbu 124 :HA T0506 209 :TGRWK 1lbu 128 :DKPIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25644 # 8abp.205.218 read from T0506.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0506)K208 (8abp)K222 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AGA 8abp 219 :QGF T0506 209 :TGRWK 8abp 223 :AADII Number of specific fragments extracted= 2 number of extra gaps= 1 total=25646 # 2fqxA.205.209 read from T0506.t2k.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)T209 (2fqxA)G229 because T (delta_L) conformation "forbidden" or filtered. T0506 205 :AGAK 2fqxA 225 :RRLN T0506 210 :GRWK 2fqxA 230 :QDVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=25648 # 1k8qA.205.139 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)K208 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1k8qA)L147 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1k8qA)H148 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AGA 1k8qA 140 :KKT T0506 209 :TGR 1k8qA 144 :QDK Number of specific fragments extracted= 2 number of extra gaps= 2 total=25650 # 1zuwA.205.105 read from T0506.t2k.many.frag # found chain 1zuwA in template set Warning: unaligning (T0506)A207 (1zuwA)T108 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AG 1zuwA 106 :KV T0506 208 :KTGRWK 1zuwA 109 :DNQHIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25652 # 1v33A.205.153 read from T0506.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0506)G206 (1v33A)E135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1v33A)N139 because G (3-10) conformation "forbidden" or filtered. T0506 205 :A 1v33A 134 :E T0506 207 :A 1v33A 136 :L T0506 209 :T 1v33A 138 :F T0506 211 :RWK 1v33A 140 :DIH Number of specific fragments extracted= 4 number of extra gaps= 3 total=25656 # 1km4A.205.169 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)A207 (1km4A)G172 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1km4A)S175 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AG 1km4A 170 :II T0506 208 :KT 1km4A 173 :QD T0506 211 :RWK 1km4A 176 :FLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=25659 # 1uarA.205.100 read from T0506.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)K208 (1uarA)G104 because T (delta_L) conformation "forbidden" or filtered. T0506 205 :AGA 1uarA 101 :KYN T0506 209 :TGRWK 1uarA 105 :HKDVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25661 1ykdA expands to /projects/compbio/data/pdb/1ykd.pdb.gz 1ykdA:Skipped atom 2457, because occupancy 0.500 <= existing 0.500 in 1ykdA Skipped atom 2459, because occupancy 0.500 <= existing 0.500 in 1ykdA # 1ykdA.205.227 read from T0506.t2k.many.frag # adding 1ykdA to template set # found chain 1ykdA in template set Warning: unaligning (T0506)K208 (1ykdA)N288 because L (left) conformation "forbidden" or filtered. T0506 205 :AGA 1ykdA 285 :ELM T0506 209 :TGRWK 1ykdA 289 :ADRST Number of specific fragments extracted= 2 number of extra gaps= 1 total=25663 # 1pg4A.205.537 read from T0506.t2k.many.frag # found chain 1pg4A in training set Warning: unaligning (T0506)G206 (1pg4A)H539 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1pg4A)E544 because Y (epsilon') conformation "forbidden" or filtered. T0506 205 :A 1pg4A 538 :A T0506 207 :AKTG 1pg4A 540 :PKIA T0506 212 :WK 1pg4A 545 :AA Number of specific fragments extracted= 3 number of extra gaps= 2 total=25666 1v4sA expands to /projects/compbio/data/pdb/1v4s.pdb.gz 1v4sA:# 1v4sA.205.202 read from T0506.t2k.many.frag # adding 1v4sA to template set # found chain 1v4sA in template set T0506 205 :AGAKTGRWK 1v4sA 213 :CYYEDHQCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25667 1xd8A expands to /projects/compbio/data/pdb/1xd8.pdb.gz 1xd8A:# 1xd8A.205.169 read from T0506.t2k.many.frag # adding 1xd8A to template set # found chain 1xd8A in template set Warning: unaligning (T0506)K208 (1xd8A)N173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1xd8A)G175 because Y (epsilon') conformation "forbidden" or filtered. T0506 205 :AGA 1xd8A 170 :KYA T0506 209 :T 1xd8A 174 :S T0506 211 :RWK 1xd8A 176 :SVR Number of specific fragments extracted= 3 number of extra gaps= 2 total=25670 # 1moq.205.219 read from T0506.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0506)W212 (1moq)A467 because Y (epsilon') conformation "forbidden" or filtered. T0506 205 :AGAKTGR 1moq 460 :DFSDKHH T0506 213 :K 1moq 468 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25672 # 1onwA.205.272 read from T0506.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)A207 (1onwA)I275 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1onwA)P276 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AG 1onwA 273 :AG T0506 209 :TGRWK 1onwA 277 :LARVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=25674 # 1zz1A.205.166 read from T0506.t2k.many.frag # found chain 1zz1A in template set Warning: unaligning (T0506)K208 (1zz1A)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 205 :AGA 1zz1A 167 :AVL T0506 209 :TGRWK 1zz1A 171 :MERVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25676 # 1pzxA.205.252 read from T0506.t2k.many.frag # found chain 1pzxA in template set Warning: unaligning (T0506)K208 (1pzxA)G254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1pzxA)T256 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1pzxA)F259 because D (zeta) conformation "forbidden" or filtered. T0506 205 :AGA 1pzxA 251 :ETH T0506 209 :T 1pzxA 255 :C T0506 211 :RW 1pzxA 257 :RF Number of specific fragments extracted= 3 number of extra gaps= 3 total=25679 # 1ro7A.205.140 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)K208 (1ro7A)G144 because T (delta_L) conformation "forbidden" or filtered. T0506 205 :AGA 1ro7A 141 :IAL T0506 209 :TGRWK 1ro7A 145 :YKEIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25681 # 1f3vA.205.104 read from T0506.t2k.many.frag # found chain 1f3vA in template set Warning: unaligning (T0506)K208 (1f3vA)A108 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1f3vA)P113 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AGA 1f3vA 105 :AAL T0506 209 :TGRW 1f3vA 109 :QHSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=25683 # 1ako.205.137 read from T0506.t2k.many.frag # found chain 1ako in training set Warning: unaligning (T0506)G206 (1ako)E139 because G (3-10) conformation "forbidden" or filtered. T0506 205 :A 1ako 138 :T T0506 207 :AKTGRWK 1ako 140 :LKRDNPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25685 # 1nrzA.206.95 read from T0506.t2k.many.frag # found chain 1nrzA in training set T0506 206 :GAKTGRWKI 1nrzA 97 :GVQIATLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25686 # 1vd6A.206.118 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)G206 (1vd6A)L119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1vd6A)G121 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1vd6A)E123 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :A 1vd6A 120 :R T0506 209 :T 1vd6A 122 :R T0506 211 :RWKI 1vd6A 124 :GVWV Number of specific fragments extracted= 3 number of extra gaps= 3 total=25689 # 1i24A.206.291 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)K208 (1i24A)K284 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1i24A)F288 because D (zeta) conformation "forbidden" or filtered. T0506 206 :GA 1i24A 282 :PA T0506 209 :TGR 1i24A 285 :AGE T0506 213 :KI 1i24A 289 :RV Number of specific fragments extracted= 3 number of extra gaps= 2 total=25692 # 1x7dA.206.150 read from T0506.t2k.many.frag # found chain 1x7dA in training set Warning: unaligning (T0506)K208 (1x7dA)G153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1x7dA)E155 because G (3-10) conformation "forbidden" or filtered. T0506 206 :GA 1x7dA 151 :HL T0506 209 :T 1x7dA 154 :I T0506 211 :RWKI 1x7dA 156 :EIVA Number of specific fragments extracted= 3 number of extra gaps= 2 total=25695 # 1lam.206.438 read from T0506.t2k.many.frag # found chain 1lam in training set T0506 206 :GAKTGRWKI 1lam 439 :FVTHPKWAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25696 # 1a8y.206.275 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 206 :GAKTGRWKI 1a8y 276 :NTDNPDLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25697 # 1uarA.206.101 read from T0506.t2k.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)A207 (1uarA)N103 because G (3-10) conformation "forbidden" or filtered. T0506 206 :G 1uarA 102 :Y T0506 208 :KTGRWKI 1uarA 104 :GHKDVRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25699 # 2fckA.206.128 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. T0506 206 :GA 2fckA 126 :RL T0506 209 :TGRWKI 2fckA 129 :LTRLEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25701 # 1ro7A.206.141 read from T0506.t2k.many.frag # found chain 1ro7A in training set T0506 206 :GAKTGRWKI 1ro7A 142 :ALGYKEIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25702 # 1v84A.206.27 read from T0506.t2k.many.frag # found chain 1v84A in template set Warning: unaligning (T0506)R211 (1v84A)N114 because L (left) conformation "forbidden" or filtered. T0506 206 :GAKTG 1v84A 109 :LLHVP T0506 212 :WKI 1v84A 115 :LHW Number of specific fragments extracted= 2 number of extra gaps= 1 total=25704 1wy5A expands to /projects/compbio/data/pdb/1wy5.pdb.gz 1wy5A:# 1wy5A.206.49 read from T0506.t2k.many.frag # adding 1wy5A to template set # found chain 1wy5A in template set Warning: unaligning (T0506)A207 (1wy5A)F51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1wy5A)S52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1wy5A)K54 because G (3-10) conformation "forbidden" or filtered. T0506 206 :G 1wy5A 50 :Y T0506 209 :T 1wy5A 53 :L T0506 211 :RWKI 1wy5A 55 :EVAL Number of specific fragments extracted= 3 number of extra gaps= 2 total=25707 # 8abp.206.219 read from T0506.t2k.many.frag # found chain 8abp in training set T0506 206 :GAKTGRWKI 8abp 220 :GFKAADIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25708 # 2a3nA.206.214 read from T0506.t2k.many.frag # found chain 2a3nA in template set T0506 206 :GAKTGRWKI 2a3nA 203 :YHNSDYMMW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25709 # 2fqxA.206.210 read from T0506.t2k.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)G210 (2fqxA)Q230 because P (beta_P) conformation "forbidden" or filtered. T0506 206 :GAKT 2fqxA 226 :RLNG T0506 211 :RWKI 2fqxA 231 :DVWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25711 # 1v33A.206.154 read from T0506.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0506)G206 (1v33A)E135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1v33A)G137 because L (left) conformation "forbidden" or filtered. T0506 207 :A 1v33A 136 :L T0506 209 :TGRWKI 1v33A 138 :FNDIHI Number of specific fragments extracted= 2 number of extra gaps= 2 total=25713 # 1xd8A.206.170 read from T0506.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0506)G206 (1xd8A)Y171 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1xd8A)N173 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1xd8A)G175 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :A 1xd8A 172 :A T0506 209 :T 1xd8A 174 :S T0506 211 :RWKI 1xd8A 176 :SVRL Number of specific fragments extracted= 3 number of extra gaps= 3 total=25716 # 1k8qA.206.140 read from T0506.t2k.many.frag # found chain 1k8qA in template set Warning: unaligning (T0506)K208 (1k8qA)G143 because T (delta_L) conformation "forbidden" or filtered. T0506 206 :GA 1k8qA 141 :KT T0506 209 :TGRWKI 1k8qA 144 :QDKLHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=25718 # 1ykdA.206.228 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)K208 (1ykdA)N288 because L (left) conformation "forbidden" or filtered. T0506 206 :GA 1ykdA 286 :LM T0506 209 :TGRWKI 1ykdA 289 :ADRSTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25720 # 1pzxA.206.253 read from T0506.t2k.many.frag # found chain 1pzxA in template set Warning: unaligning (T0506)K208 (1pzxA)G254 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1pzxA)T256 because G (3-10) conformation "forbidden" or filtered. T0506 206 :GA 1pzxA 252 :TH T0506 209 :T 1pzxA 255 :C T0506 211 :RWKI 1pzxA 257 :RFFL Number of specific fragments extracted= 3 number of extra gaps= 2 total=25723 # 1pg4A.206.538 read from T0506.t2k.many.frag # found chain 1pg4A in training set Warning: unaligning (T0506)R211 (1pg4A)E544 because Y (epsilon') conformation "forbidden" or filtered. T0506 206 :GAKTG 1pg4A 539 :HPKIA T0506 212 :WKI 1pg4A 545 :AAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25725 # 1moq.206.220 read from T0506.t2k.many.frag # found chain 1moq in training set Warning: unaligning (T0506)G206 (1moq)F461 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1moq)A467 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1moq)L468 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :AKTGR 1moq 462 :SDKHH T0506 214 :I 1moq 469 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=25727 # 1onwA.206.273 read from T0506.t2k.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)A207 (1onwA)I275 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1onwA)R279 because G (3-10) conformation "forbidden" or filtered. T0506 206 :G 1onwA 274 :G T0506 208 :KTG 1onwA 276 :PLA T0506 212 :WKI 1onwA 280 :VTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=25730 1ysrA expands to /projects/compbio/data/pdb/1ysr.pdb.gz 1ysrA:# 1ysrA.206.60 read from T0506.t2k.many.frag # adding 1ysrA to template set # found chain 1ysrA in template set Warning: unaligning (T0506)G206 (1ysrA)H357 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1ysrA)G359 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1ysrA)T361 because G (3-10) conformation "forbidden" or filtered. T0506 207 :A 1ysrA 358 :G T0506 209 :T 1ysrA 360 :A T0506 211 :RWKI 1ysrA 362 :LVQL Number of specific fragments extracted= 3 number of extra gaps= 3 total=25733 # 1j98A.206.67 read from T0506.t2k.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)K213 (1j98A)D75 because E (beta_S) conformation "forbidden" or filtered. T0506 206 :GAKTGRW 1j98A 68 :AEKYDHF T0506 214 :I 1j98A 76 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=25735 # 1v4sA.206.203 read from T0506.t2k.many.frag # found chain 1v4sA in template set T0506 206 :GAKTGRWKI 1v4sA 214 :YYEDHQCEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25736 # 1v4vA.206.27 read from T0506.t2k.many.frag # found chain 1v4vA in training set Warning: unaligning (T0506)G210 (1v4vA)P32 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1v4vA)G33 because T (delta_L) conformation "forbidden" or filtered. T0506 206 :GAKT 1v4vA 28 :LRGI T0506 212 :WKI 1v4vA 34 :LKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25738 # 1vb3A.206.120 read from T0506.t2k.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)K208 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. T0506 206 :GA 1vb3A 121 :IA T0506 209 :TGRWKI 1vb3A 124 :DKPVTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25740 # 1km4A.206.170 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)G210 (1km4A)S175 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1km4A)I178 because E (beta_S) conformation "forbidden" or filtered. T0506 206 :GAKT 1km4A 171 :IGQD T0506 211 :RW 1km4A 176 :FL T0506 214 :I 1km4A 179 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=25743 # 1y44A.206.258 read from T0506.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)K208 (1y44A)R261 because L (left) conformation "forbidden" or filtered. T0506 206 :GA 1y44A 259 :EA T0506 209 :TGRWKI 1y44A 262 :AKQLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25745 # 1zuwA.206.106 read from T0506.t2k.many.frag # found chain 1zuwA in template set T0506 206 :GAKTGRWKI 1zuwA 107 :VTDNQHIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25746 # 1nrzA.207.96 read from T0506.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)K213 (1nrzA)N104 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTGRW 1nrzA 98 :VQIATL T0506 214 :IT 1nrzA 105 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25748 # 1i24A.207.292 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)K208 (1i24A)K284 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :A 1i24A 283 :A T0506 209 :TGRWKIT 1i24A 285 :AGEFRVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25750 # 1vd6A.207.119 read from T0506.t2k.many.frag # found chain 1vd6A in template set T0506 207 :AKTGRWKIT 1vd6A 120 :RGREGVWVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25751 # 1lam.207.439 read from T0506.t2k.many.frag # found chain 1lam in training set Warning: unaligning (T0506)A207 (1lam)V440 because E (beta_S) conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1lam 441 :THPKWAHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25752 # 1a8y.207.276 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 207 :AKTGRWKIT 1a8y 277 :TDNPDLSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25753 # 8abp.207.220 read from T0506.t2k.many.frag # found chain 8abp in training set T0506 207 :AKTGRWKIT 8abp 221 :FKAADIIGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25754 # 1q3iA.207.192 read from T0506.t2k.many.frag # found chain 1q3iA in template set Warning: unaligning (T0506)A207 (1q3iA)F571 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1q3iA)K575 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1q3iA)C577 because E (beta_S) conformation "forbidden" or filtered. T0506 208 :KTG 1q3iA 572 :PTE T0506 212 :W 1q3iA 576 :L T0506 214 :IT 1q3iA 578 :FV Number of specific fragments extracted= 3 number of extra gaps= 3 total=25757 # 2fqxA.207.211 read from T0506.t2k.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)T209 (2fqxA)G229 because T (delta_L) conformation "forbidden" or filtered. T0506 207 :AK 2fqxA 227 :LN T0506 210 :GRWKIT 2fqxA 230 :QDVWVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25759 # 1xd8A.207.171 read from T0506.t2k.many.frag # found chain 1xd8A in template set T0506 207 :AKTGRWKIT 1xd8A 172 :ANSGSVRLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25760 # 1j98A.207.68 read from T0506.t2k.many.frag # found chain 1j98A in training set T0506 207 :AKTGRWKIT 1j98A 69 :EKYDHFDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=25761 # 1ro7A.207.142 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)G210 (1ro7A)K146 because G (3-10) conformation "forbidden" or filtered. T0506 207 :AKT 1ro7A 143 :LGY T0506 211 :RWKIT 1ro7A 147 :EIYLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25763 # 1gudA.207.215 read from T0506.t2k.many.frag # found chain 1gudA in training set Warning: unaligning (T0506)A207 (1gudA)G216 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1gudA)L222 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KTGRW 1gudA 217 :KTGKV T0506 214 :IT 1gudA 223 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=25765 # 1ok7A.207.330 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)K213 (1ok7A)R337 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :AKTGRW 1ok7A 331 :LKCENV T0506 214 :IT 1ok7A 338 :MM Number of specific fragments extracted= 2 number of extra gaps= 1 total=25767 # 1dp4A.207.230 read from T0506.t2k.many.frag # found chain 1dp4A in template set Warning: unaligning (T0506)K213 (1dp4A)V237 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :AKTGRW 1dp4A 231 :LTGEDY T0506 214 :IT 1dp4A 238 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=25769 # 1uarA.207.102 read from T0506.t2k.many.frag # found chain 1uarA in training set T0506 207 :AKTGRWKIT 1uarA 103 :NGHKDVRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25770 # 2nlrA.207.187 read from T0506.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)K208 (2nlrA)A189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T215 (2nlrA)T196 because G (3-10) conformation "forbidden" or filtered. T0506 207 :A 2nlrA 188 :L T0506 209 :TGRWKI 2nlrA 190 :ENDWYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=25772 # 1wy5A.207.50 read from T0506.t2k.many.frag # found chain 1wy5A in template set T0506 207 :AKTGRWKIT 1wy5A 51 :FSLKEVALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25773 # 1rwhA.207.640 read from T0506.t2k.many.frag # found chain 1rwhA in training set T0506 207 :AKTGRWKIT 1rwhA 641 :LEGNKYSVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25774 1yw3A expands to /projects/compbio/data/pdb/1yw3.pdb.gz 1yw3A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yw3A.207.162 read from T0506.t2k.many.frag # adding 1yw3A to template set # found chain 1yw3A in template set Warning: unaligning (T0506)A207 (1yw3A)D163 because L (left) conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1yw3A 164 :LPTNWKMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25775 # 1ykdA.207.229 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)K208 (1ykdA)N288 because L (left) conformation "forbidden" or filtered. T0506 207 :A 1ykdA 287 :M T0506 209 :TGRWKIT 1ykdA 289 :ADRSTLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=25777 # 1y44A.207.259 read from T0506.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)K208 (1y44A)R261 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1y44A)I266 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :A 1y44A 260 :A T0506 209 :TGRW 1y44A 262 :AKQL T0506 214 :IT 1y44A 267 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=25780 1vjlA expands to /projects/compbio/data/pdb/1vjl.pdb.gz 1vjlA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vjlA.207.81 read from T0506.t2k.many.frag # adding 1vjlA to template set # found chain 1vjlA in template set T0506 207 :AKTGRWKIT 1vjlA 70 :ARVDKVIIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25781 # 1v84A.207.28 read from T0506.t2k.many.frag # found chain 1v84A in template set Warning: unaligning (T0506)G210 (1v84A)P113 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1v84A)N114 because L (left) conformation "forbidden" or filtered. T0506 207 :AKT 1v84A 110 :LHV T0506 212 :WKIT 1v84A 115 :LHWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25783 1qmyA expands to /projects/compbio/data/pdb/1qmy.pdb.gz 1qmyA:# 1qmyA.207.115 read from T0506.t2k.many.frag # adding 1qmyA to template set # found chain 1qmyA in template set Warning: unaligning (T0506)A207 (1qmyA)K144 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1qmyA)G145 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1qmyA)E147 because G (3-10) conformation "forbidden" or filtered. T0506 209 :T 1qmyA 146 :Q T0506 211 :RWKIT 1qmyA 148 :HAVFA Number of specific fragments extracted= 2 number of extra gaps= 2 total=25785 # 2fckA.207.129 read from T0506.t2k.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)G210 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. T0506 207 :AKT 2fckA 127 :LEL T0506 211 :RWKIT 2fckA 131 :RLEIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25787 # 1u02A.207.168 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)K208 (1u02A)G170 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1u02A)R172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1u02A)A174 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :A 1u02A 169 :R T0506 209 :T 1u02A 171 :E T0506 211 :R 1u02A 173 :P T0506 213 :KIT 1u02A 175 :IIA Number of specific fragments extracted= 4 number of extra gaps= 3 total=25791 # 1pg4A.207.539 read from T0506.t2k.many.frag # found chain 1pg4A in training set Warning: unaligning (T0506)R211 (1pg4A)E544 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :AKTG 1pg4A 540 :PKIA T0506 212 :WKIT 1pg4A 545 :AAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25793 1zwxA expands to /projects/compbio/data/pdb/1zwx.pdb.gz 1zwxA:Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 643, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 645, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 647, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 649, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1281, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1283, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1961, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1963, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1965, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1967, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1981, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1983, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1985, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1987, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 1989, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 2284, because occupancy 0.500 <= existing 0.500 in 1zwxA Skipped atom 2286, because occupancy 0.500 <= existing 0.500 in 1zwxA # 1zwxA.207.183 read from T0506.t2k.many.frag # adding 1zwxA to template set # found chain 1zwxA in template set Warning: unaligning (T0506)A207 (1zwxA)I218 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1zwxA 219 :PKDEIIFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25794 # 1ysrA.207.61 read from T0506.t2k.many.frag # found chain 1ysrA in template set Warning: unaligning (T0506)A207 (1ysrA)G358 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1ysrA)T361 because G (3-10) conformation "forbidden" or filtered. T0506 208 :KT 1ysrA 359 :GA T0506 211 :RWKIT 1ysrA 362 :LVQLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=25796 # 1v33A.207.155 read from T0506.t2k.many.frag # found chain 1v33A in training set Warning: unaligning (T0506)A207 (1v33A)L136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1v33A)G137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1v33A)N139 because G (3-10) conformation "forbidden" or filtered. T0506 209 :T 1v33A 138 :F T0506 211 :RWKIT 1v33A 140 :DIHII Number of specific fragments extracted= 2 number of extra gaps= 2 total=25798 # 1dp4A.208.231 read from T0506.t2k.many.frag # found chain 1dp4A in template set Warning: unaligning (T0506)K208 (1dp4A)T232 because E (beta_S) conformation "forbidden" or filtered. T0506 209 :TGRWKITS 1dp4A 233 :GEDYVFFH Number of specific fragments extracted= 1 number of extra gaps= 1 total=25799 # 1a8y.208.277 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 208 :KTGRWKITS 1a8y 278 :DNPDLSIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=25800 # 1nrzA.208.97 read from T0506.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)K213 (1nrzA)N104 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KTGRW 1nrzA 99 :QIATL T0506 214 :ITS 1nrzA 105 :IGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25802 # 1i24A.208.293 read from T0506.t2k.many.frag # found chain 1i24A in template set T0506 208 :KTGRWKITS 1i24A 284 :KAGEFRVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25803 # 1xd8A.208.172 read from T0506.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0506)G210 (1xd8A)G175 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1xd8A)G181 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KT 1xd8A 173 :NS T0506 211 :RWKIT 1xd8A 176 :SVRLG Number of specific fragments extracted= 2 number of extra gaps= 2 total=25805 # 2fqxA.208.212 read from T0506.t2k.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)T209 (2fqxA)G229 because T (delta_L) conformation "forbidden" or filtered. T0506 208 :K 2fqxA 228 :N T0506 210 :GRWKITS 2fqxA 230 :QDVWVIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25807 # 1q3iA.208.193 read from T0506.t2k.many.frag # found chain 1q3iA in template set Warning: unaligning (T0506)R211 (1q3iA)K575 because L (left) conformation "forbidden" or filtered. T0506 208 :KTG 1q3iA 572 :PTE T0506 212 :WKITS 1q3iA 576 :LCFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25809 # 1d2sA.208.49 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)W212 (1d2sA)W66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTGR 1d2sA 62 :PKDD T0506 213 :KIT 1d2sA 67 :FML Number of specific fragments extracted= 2 number of extra gaps= 2 total=25811 # 1ro7A.208.143 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)K208 (1ro7A)G144 because T (delta_L) conformation "forbidden" or filtered. T0506 209 :TGRWKITS 1ro7A 145 :YKEIYLSG Number of specific fragments extracted= 1 number of extra gaps= 1 total=25812 # 1y44A.208.260 read from T0506.t2k.many.frag # found chain 1y44A in template set T0506 208 :KTGRWKITS 1y44A 261 :RAKQLILTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=25813 # 1ok7A.208.331 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 208 :KTGRWKITS 1ok7A 332 :KCENVRMML Number of specific fragments extracted= 1 number of extra gaps= 0 total=25814 # 1yw3A.208.163 read from T0506.t2k.many.frag # found chain 1yw3A in template set Warning: unaligning (T0506)K213 (1yw3A)K169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1yw3A)A172 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTGRW 1yw3A 164 :LPTNW T0506 214 :IT 1yw3A 170 :MR Number of specific fragments extracted= 2 number of extra gaps= 2 total=25816 # 1ykdA.208.230 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)K208 (1ykdA)N288 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1ykdA)T293 because E (beta_S) conformation "forbidden" or filtered. T0506 209 :TGRW 1ykdA 289 :ADRS T0506 214 :ITS 1ykdA 294 :LWL Number of specific fragments extracted= 2 number of extra gaps= 2 total=25818 # 2nlrA.208.188 read from T0506.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)K208 (2nlrA)A189 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKITS 2nlrA 190 :ENDWYLTS Number of specific fragments extracted= 1 number of extra gaps= 1 total=25819 # 1gudA.208.216 read from T0506.t2k.many.frag # found chain 1gudA in training set T0506 208 :KTGRWKITS 1gudA 217 :KTGKVLVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25820 # 1j98A.208.69 read from T0506.t2k.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)S216 (1j98A)D78 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1j98A 70 :KYDHFDII Number of specific fragments extracted= 1 number of extra gaps= 1 total=25821 # 1nofA.208.161 read from T0506.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0506)G210 (1nofA)G194 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1nofA)S195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 because of BadResidue code BAD_PEPTIDE in next template residue (1nofA)A201 T0506 208 :KT 1nofA 192 :KF T0506 212 :WKIT 1nofA 196 :LKVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=25823 # 1vd6A.208.120 read from T0506.t2k.many.frag # found chain 1vd6A in template set Warning: unaligning (T0506)R211 (1vd6A)G124 because T (delta_L) conformation "forbidden" or filtered. T0506 208 :KTG 1vd6A 121 :GRE T0506 212 :WKITS 1vd6A 125 :VWVSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25825 # 1t6cA.208.135 read from T0506.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0506)G210 (1t6cA)G135 because S (epsilon) conformation "forbidden" or filtered. T0506 208 :KT 1t6cA 133 :PE T0506 211 :RWKITS 1t6cA 136 :EVCVVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25827 # 1lam.208.440 read from T0506.t2k.many.frag # found chain 1lam in training set T0506 208 :KTGRWKITS 1lam 441 :THPKWAHLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25828 # 1gxrA.208.233 read from T0506.t2k.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)T209 (1gxrA)T668 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1gxrA)G669 because S (epsilon) conformation "forbidden" or filtered. T0506 208 :K 1gxrA 667 :P T0506 211 :RWKITS 1gxrA 670 :EWLAVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25830 # 8abp.208.221 read from T0506.t2k.many.frag # found chain 8abp in training set Warning: unaligning (T0506)K208 (8abp)K222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (8abp)D225 because G (3-10) conformation "forbidden" or filtered. T0506 209 :TG 8abp 223 :AA T0506 212 :WKITS 8abp 226 :IIGIG Number of specific fragments extracted= 2 number of extra gaps= 2 total=25832 # 1rwhA.208.641 read from T0506.t2k.many.frag # found chain 1rwhA in training set T0506 208 :KTGRWKITS 1rwhA 642 :EGNKYSVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=25833 # 2fb5A.208.175 read from T0506.t2k.many.frag # found chain 2fb5A in template set T0506 208 :KTGRWKITS 2fb5A 176 :EKSDALILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25834 1v8bA expands to /projects/compbio/data/pdb/1v8b.pdb.gz 1v8bA:# 1v8bA.208.42 read from T0506.t2k.many.frag # adding 1v8bA to template set # found chain 1v8bA in template set Warning: unaligning (T0506)G210 (1v8bA)K45 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KT 1v8bA 43 :PL T0506 211 :RWKITS 1v8bA 46 :NAKITG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25836 # 1ig0A.208.211 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)S216 (1ig0A)Y220 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1ig0A 212 :NASYFKLC Number of specific fragments extracted= 1 number of extra gaps= 1 total=25837 # 1u02A.208.169 read from T0506.t2k.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)K208 (1u02A)G170 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1u02A)R172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1u02A)A174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1u02A)G178 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :T 1u02A 171 :E T0506 211 :R 1u02A 173 :P T0506 213 :KIT 1u02A 175 :IIA Number of specific fragments extracted= 3 number of extra gaps= 4 total=25840 # 1qddA.208.71 read from T0506.t2k.many.frag # found chain 1qddA in training set Warning: unaligning (T0506)K213 (1qddA)W77 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KTGRW 1qddA 72 :DDFNV T0506 214 :ITS 1qddA 78 :IGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25842 # 1gp0A.208.112 read from T0506.t2k.many.frag # found chain 1gp0A in training set T0506 208 :KTGRWKITS 1gp0A 1620 :PTNRPMLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25843 # 1umwA.208.149 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)W212 (1umwA)A520 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTGR 1umwA 516 :RTRS T0506 213 :KITS 1umwA 521 :IILH Number of specific fragments extracted= 2 number of extra gaps= 1 total=25845 # 1d2sA.209.50 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1d2sA 63 :KDDWFML T0506 217 :I 1d2sA 71 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25847 # 1a8y.209.278 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 209 :TGRWKITSI 1a8y 279 :NPDLSIIWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25848 # 1dp4A.209.232 read from T0506.t2k.many.frag # found chain 1dp4A in template set T0506 209 :TGRWKITSI 1dp4A 233 :GEDYVFFHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25849 # 1t6cA.209.136 read from T0506.t2k.many.frag # found chain 1t6cA in training set T0506 209 :TGRWKITSI 1t6cA 134 :EGEVCVVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25850 # 1yw3A.209.164 read from T0506.t2k.many.frag # found chain 1yw3A in template set Warning: unaligning (T0506)S216 (1yw3A)A172 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1yw3A 165 :PTNWKMR T0506 217 :I 1yw3A 173 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=25852 # 2fqxA.209.213 read from T0506.t2k.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)G210 (2fqxA)Q230 because P (beta_P) conformation "forbidden" or filtered. T0506 209 :T 2fqxA 229 :G T0506 211 :RWKITSI 2fqxA 231 :DVWVIGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25854 # 1xd8A.209.173 read from T0506.t2k.many.frag # found chain 1xd8A in template set Warning: unaligning (T0506)S216 (1xd8A)G181 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1xd8A 174 :SGSVRLG T0506 217 :I 1xd8A 182 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=25856 # 1gp0A.209.113 read from T0506.t2k.many.frag # found chain 1gp0A in training set T0506 209 :TGRWKITSI 1gp0A 1621 :TNRPMLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25857 # 1nrzA.209.98 read from T0506.t2k.many.frag # found chain 1nrzA in training set T0506 209 :TGRWKITSI 1nrzA 100 :IATLNIGGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25858 # 1ykdA.209.231 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)R211 (1ykdA)R291 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TG 1ykdA 289 :AD T0506 212 :WKITSI 1ykdA 292 :STLWLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25860 # 1y44A.209.261 read from T0506.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)S216 (1y44A)H269 because L (left) conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1y44A 262 :AKQLILT T0506 217 :I 1y44A 270 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=25862 # 1ig0A.209.212 read from T0506.t2k.many.frag # found chain 1ig0A in training set T0506 209 :TGRWKITSI 1ig0A 213 :ASYFKLCYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=25863 # 1j98A.209.70 read from T0506.t2k.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)R211 (1j98A)H73 because G (3-10) conformation "forbidden" or filtered. T0506 209 :TG 1j98A 71 :YD T0506 212 :WKITSI 1j98A 74 :FDIIDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25865 # 1nycA.209.51 read from T0506.t2k.many.frag # found chain 1nycA in training set T0506 209 :TGRWKITSI 1nycA 50 :HNQYHILFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25866 # 1ok7A.209.332 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 209 :TGRWKITSI 1ok7A 333 :CENVRMMLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25867 # 1i24A.209.294 read from T0506.t2k.many.frag # found chain 1i24A in template set T0506 209 :TGRWKITSI 1i24A 285 :AGEFRVFNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25868 # 1nofA.209.162 read from T0506.t2k.many.frag # found chain 1nofA in training set Warning: unaligning (T0506)S216 because of BadResidue code BAD_PEPTIDE in next template residue (1nofA)A201 Warning: unaligning (T0506)I217 because of BadResidue code BAD_PEPTIDE at template residue (1nofA)A201 T0506 209 :TGRWKIT 1nofA 193 :FGSLKVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=25869 # 1q3iA.209.194 read from T0506.t2k.many.frag # found chain 1q3iA in template set Warning: unaligning (T0506)R211 (1q3iA)K575 because L (left) conformation "forbidden" or filtered. T0506 209 :TG 1q3iA 573 :TE T0506 212 :WKITSI 1q3iA 576 :LCFVGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25871 # 1umwA.209.150 read from T0506.t2k.many.frag # found chain 1umwA in template set T0506 209 :TGRWKITSI 1umwA 517 :TRSAIILHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25872 # 1ro7A.209.144 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)S216 (1ro7A)G152 because T (delta_L) conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1ro7A 145 :YKEIYLS T0506 217 :I 1ro7A 153 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=25874 1qhtA expands to /projects/compbio/data/pdb/1qht.pdb.gz 1qhtA:# 1qhtA.209.530 read from T0506.t2k.many.frag # adding 1qhtA to template set # found chain 1qhtA in template set T0506 209 :TGRWKITSI 1qhtA 531 :KFGFKVLYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25875 # 1jftA.209.264 read from T0506.t2k.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)T209 (1jftA)P266 because C (cis) conformation "forbidden" or filtered. T0506 210 :GRWKITSI 1jftA 267 :QDVSLIGY Number of specific fragments extracted= 1 number of extra gaps= 1 total=25876 # 2d0oA.209.405 read from T0506.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0506)R211 (2d0oA)P408 because C (cis) conformation "forbidden" or filtered. T0506 209 :TG 2d0oA 406 :TR T0506 212 :WKITSI 2d0oA 409 :LAILDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=25878 # 2fb5A.209.176 read from T0506.t2k.many.frag # found chain 2fb5A in template set Warning: unaligning (T0506)W212 (2fb5A)A180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (2fb5A)L181 because E (beta_S) conformation "forbidden" or filtered. T0506 209 :TGR 2fb5A 177 :KSD T0506 214 :ITSI 2fb5A 182 :ILVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=25880 # 1rwhA.209.642 read from T0506.t2k.many.frag # found chain 1rwhA in training set T0506 209 :TGRWKITSI 1rwhA 643 :GNKYSVIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=25881 # 1gxrA.209.234 read from T0506.t2k.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)T209 (1gxrA)T668 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1gxrA)E670 because T (delta_L) conformation "forbidden" or filtered. T0506 210 :G 1gxrA 669 :G T0506 212 :WKITSI 1gxrA 671 :WLAVGM Number of specific fragments extracted= 2 number of extra gaps= 2 total=25883 # 2nlrA.209.189 read from T0506.t2k.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)T215 (2nlrA)T196 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2nlrA)S197 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKI 2nlrA 190 :ENDWYL T0506 217 :I 2nlrA 198 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=25885 # 1v8bA.209.43 read from T0506.t2k.many.frag # found chain 1v8bA in template set Warning: unaligning (T0506)G210 (1v8bA)K45 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1v8bA)N46 because T (delta_L) conformation "forbidden" or filtered. T0506 209 :T 1v8bA 44 :L T0506 212 :WKITSI 1v8bA 47 :AKITGC Number of specific fragments extracted= 2 number of extra gaps= 1 total=25887 2bwrA expands to /projects/compbio/data/pdb/2bwr.pdb.gz 2bwrA:Skipped atom 329, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 331, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 333, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 2bwrA Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 2bwrA Skipped atom 2429, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 2431, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 2433, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 2435, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 2538, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 2540, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 2542, because occupancy 0.400 <= existing 0.600 in 2bwrA Skipped atom 2604, because occupancy 0.500 <= existing 0.500 in 2bwrA Skipped atom 2606, because occupancy 0.500 <= existing 0.500 in 2bwrA Skipped atom 2673, because occupancy 0.500 <= existing 0.500 in 2bwrA Skipped atom 2831, because occupancy 0.300 <= existing 0.700 in 2bwrA Skipped atom 2833, because occupancy 0.300 <= existing 0.700 in 2bwrA Skipped atom 2835, because occupancy 0.300 <= existing 0.700 in 2bwrA Skipped atom 2893, because occupancy 0.200 <= existing 0.800 in 2bwrA # 2bwrA.209.346 read from T0506.t2k.many.frag # adding 2bwrA to template set # found chain 2bwrA in template set T0506 209 :TGRWKITSI 2bwrA 347 :DGCADIVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=25888 # 2ae5B.209.173 read from T0506.t2k.many.frag # found chain 2ae5B in template set Warning: unaligning (T0506)W212 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ae5B)N178 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ae5B)N178 T0506 209 :TGR 2ae5B 174 :VPT T0506 214 :ITSI 2ae5B 179 :IVYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25890 # 1qhtA.210.531 read from T0506.t2k.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)R211 (1qhtA)G533 because L (left) conformation "forbidden" or filtered. T0506 210 :G 1qhtA 532 :F T0506 212 :WKITSID 1qhtA 534 :FKVLYAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25892 # 1gp0A.210.114 read from T0506.t2k.many.frag # found chain 1gp0A in training set T0506 210 :GRWKITSID 1gp0A 1622 :NRPMLISLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25893 # 1d2sA.210.51 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 1d2sA 64 :DDWFML T0506 217 :ID 1d2sA 71 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25895 # 1t6cA.210.137 read from T0506.t2k.many.frag # found chain 1t6cA in training set T0506 210 :GRWKITSID 1t6cA 135 :GEVCVVDQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=25896 # 1j98A.210.71 read from T0506.t2k.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)R211 (1j98A)H73 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1j98A)D78 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :G 1j98A 72 :D T0506 212 :WKIT 1j98A 74 :FDII T0506 217 :ID 1j98A 79 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=25899 # 1a8y.210.279 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 210 :GRWKITSID 1a8y 280 :PDLSIIWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25900 # 1nycA.210.52 read from T0506.t2k.many.frag # found chain 1nycA in training set T0506 210 :GRWKITSID 1nycA 51 :NQYHILFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25901 # 1rwhA.210.643 read from T0506.t2k.many.frag # found chain 1rwhA in training set T0506 210 :GRWKITSID 1rwhA 644 :NKYSVIRND Number of specific fragments extracted= 1 number of extra gaps= 0 total=25902 # 1dp4A.210.233 read from T0506.t2k.many.frag # found chain 1dp4A in template set Warning: unaligning (T0506)D218 (1dp4A)D242 because D (zeta) conformation "forbidden" or filtered. T0506 210 :GRWKITSI 1dp4A 234 :EDYVFFHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=25903 # 1y44A.210.262 read from T0506.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)S216 (1y44A)H269 because L (left) conformation "forbidden" or filtered. T0506 210 :GRWKIT 1y44A 263 :KQLILT T0506 217 :ID 1y44A 270 :IS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25905 # 1umwA.210.151 read from T0506.t2k.many.frag # found chain 1umwA in template set T0506 210 :GRWKITSID 1umwA 518 :RSAIILHLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25906 # 1ro7A.210.145 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)G210 (1ro7A)K146 because G (3-10) conformation "forbidden" or filtered. T0506 211 :RWKITSID 1ro7A 147 :EIYLSGID Number of specific fragments extracted= 1 number of extra gaps= 1 total=25907 # 1ykdA.210.232 read from T0506.t2k.many.frag # found chain 1ykdA in template set T0506 210 :GRWKITSID 1ykdA 290 :DRSTLWLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=25908 # 1ig0A.210.213 read from T0506.t2k.many.frag # found chain 1ig0A in training set T0506 210 :GRWKITSID 1ig0A 214 :SYFKLCYMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25909 # 1nrzA.210.99 read from T0506.t2k.many.frag # found chain 1nrzA in training set T0506 210 :GRWKITSID 1nrzA 101 :ATLNIGGMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25910 1ux6A expands to /projects/compbio/data/pdb/1ux6.pdb.gz 1ux6A:# 1ux6A.210.267 read from T0506.t2k.many.frag # adding 1ux6A to template set # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 1ux6A 1070 :GQVRTL T0506 217 :ID 1ux6A 1077 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25912 # 2fqxA.210.214 read from T0506.t2k.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)G210 (2fqxA)Q230 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (2fqxA)W233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (2fqxA)D238 because T (delta_L) conformation "forbidden" or filtered. T0506 211 :RW 2fqxA 231 :DV T0506 214 :ITSI 2fqxA 234 :VIGV Number of specific fragments extracted= 2 number of extra gaps= 3 total=25914 # 1ok7A.210.333 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 210 :GRWKITSID 1ok7A 334 :ENVRMMLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25915 # 1xd8A.210.174 read from T0506.t2k.many.frag # found chain 1xd8A in template set T0506 210 :GRWKITSID 1xd8A 175 :GSVRLGGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=25916 # 2sak.210.58 read from T0506.t2k.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 2sak 74 :KEFRVV T0506 217 :ID 2sak 81 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25918 # 1yw3A.210.165 read from T0506.t2k.many.frag # found chain 1yw3A in template set Warning: unaligning (T0506)S216 (1yw3A)A172 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 1yw3A 166 :TNWKMR T0506 217 :ID 1yw3A 173 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=25920 # 2d0oA.210.406 read from T0506.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0506)R211 (2d0oA)P408 because C (cis) conformation "forbidden" or filtered. T0506 210 :G 2d0oA 407 :R T0506 212 :WKITSID 2d0oA 409 :LAILDLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25922 # 1h2wA.210.287 read from T0506.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S216 (1h2wA)T294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1h2wA)E296 because D (zeta) conformation "forbidden" or filtered. T0506 210 :GRWKIT 1h2wA 288 :GEYDYV T0506 217 :I 1h2wA 295 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=25924 # 1u4bA.210.523 read from T0506.t2k.many.frag # found chain 1u4bA in training set T0506 210 :GRWKITSID 1u4bA 820 :LQAHLLLQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25925 1kwiA expands to /projects/compbio/data/pdb/1kwi.pdb.gz 1kwiA:# 1kwiA.210.23 read from T0506.t2k.many.frag # adding 1kwiA to template set # found chain 1kwiA in template set Warning: unaligning (T0506)D218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwiA)G71 T0506 210 :GRWKITSI 1kwiA 53 :NLYRLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25926 # 1i24A.210.295 read from T0506.t2k.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)D218 (1i24A)F294 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKITSI 1i24A 286 :GEFRVFNQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=25927 # 2bkxA.210.125 read from T0506.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkxA)G132 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkxA)G132 T0506 210 :GRWKI 2bkxA 126 :TDIQL T0506 217 :ID 2bkxA 133 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=25929 # 1ifrA.210.6 read from T0506.t2k.many.frag # found chain 1ifrA in training set T0506 210 :GRWKITSID 1ifrA 438 :GRVAVEEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=25930 # 2ae5B.210.174 read from T0506.t2k.many.frag # found chain 2ae5B in template set Warning: unaligning (T0506)G210 (2ae5B)P175 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ae5B)N178 Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ae5B)N178 T0506 211 :R 2ae5B 176 :T T0506 214 :ITSID 2ae5B 179 :IVYAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=25932 # 1vjlA.210.84 read from T0506.t2k.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)R211 (1vjlA)K74 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :G 1vjlA 73 :D T0506 212 :WKITSID 1vjlA 75 :VIIHSLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25934 # 1qhtA.211.532 read from T0506.t2k.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)R211 (1qhtA)G533 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1qhtA)D540 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKITSI 1qhtA 534 :FKVLYA T0506 219 :P 1qhtA 541 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=25936 # 1gp0A.211.115 read from T0506.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0506)W212 (1gp0A)P1624 because P (beta_P) conformation "forbidden" or filtered. T0506 211 :R 1gp0A 1623 :R T0506 213 :KITSIDP 1gp0A 1625 :MLISLDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=25938 # 1nycA.211.53 read from T0506.t2k.many.frag # found chain 1nycA in training set T0506 211 :RWKITSIDP 1nycA 52 :QYHILFIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=25939 # 1d2sA.211.52 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)W212 (1d2sA)W66 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. T0506 211 :R 1d2sA 65 :D T0506 213 :KIT 1d2sA 67 :FML T0506 217 :ID 1d2sA 71 :LR Number of specific fragments extracted= 3 number of extra gaps= 3 total=25942 # 1rwhA.211.644 read from T0506.t2k.many.frag # found chain 1rwhA in training set T0506 211 :RWKITSIDP 1rwhA 645 :KYSVIRNDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25943 # 1ux6A.211.268 read from T0506.t2k.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :RWKIT 1ux6A 1071 :QVRTL T0506 217 :IDP 1ux6A 1077 :HDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25945 # 1t6cA.211.138 read from T0506.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0506)K213 (1t6cA)C138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1t6cA)D141 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1t6cA)G144 because L (left) conformation "forbidden" or filtered. T0506 211 :RW 1t6cA 136 :EV T0506 214 :IT 1t6cA 139 :VV T0506 217 :ID 1t6cA 142 :QG Number of specific fragments extracted= 3 number of extra gaps= 3 total=25948 # 1ig0A.211.214 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)S216 (1ig0A)Y220 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1ig0A)T222 because E (beta_S) conformation "forbidden" or filtered. T0506 211 :RWKIT 1ig0A 215 :YFKLC T0506 217 :I 1ig0A 221 :M T0506 219 :P 1ig0A 223 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=25951 # 1ykdA.211.233 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)R211 (1ykdA)R291 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKITSIDP 1ykdA 292 :STLWLIDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=25952 # 1ifrA.211.7 read from T0506.t2k.many.frag # found chain 1ifrA in training set T0506 211 :RWKITSIDP 1ifrA 439 :RVAVEEVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25953 # 1a8y.211.280 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 211 :RWKITSIDP 1a8y 281 :DLSIIWIDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=25954 # 1ro7A.211.146 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)K213 (1ro7A)Y149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T215 (1ro7A)S151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1ro7A)G152 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1ro7A)F155 because L (left) conformation "forbidden" or filtered. T0506 211 :RW 1ro7A 147 :EI T0506 214 :I 1ro7A 150 :L T0506 217 :ID 1ro7A 153 :ID Number of specific fragments extracted= 3 number of extra gaps= 3 total=25957 # 2sak.211.59 read from T0506.t2k.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :RWKIT 2sak 75 :EFRVV T0506 217 :IDP 2sak 81 :LDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25959 # 1y44A.211.263 read from T0506.t2k.many.frag # found chain 1y44A in template set T0506 211 :RWKITSIDP 1y44A 264 :QLILTHISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25960 # 1kwiA.211.24 read from T0506.t2k.many.frag # found chain 1kwiA in template set Warning: unaligning (T0506)D218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwiA)G71 T0506 211 :RWKITSI 1kwiA 54 :LYRLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=25961 # 2bkxA.211.126 read from T0506.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkxA)G132 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkxA)G132 T0506 211 :RWKI 2bkxA 127 :DIQL T0506 217 :IDP 2bkxA 133 :IGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25963 # 1dp4A.211.234 read from T0506.t2k.many.frag # found chain 1dp4A in template set T0506 211 :RWKITSIDP 1dp4A 235 :DYVFFHLDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=25964 # 1j98A.211.72 read from T0506.t2k.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)S216 (1j98A)D78 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :RWKIT 1j98A 73 :HFDII T0506 217 :IDP 1j98A 79 :ISP Number of specific fragments extracted= 2 number of extra gaps= 1 total=25966 # 1h2wA.211.288 read from T0506.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)D218 (1h2wA)E296 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1h2wA)G297 because S (epsilon) conformation "forbidden" or filtered. T0506 211 :RWKITSI 1h2wA 289 :EYDYVTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=25967 # 1vjlA.211.85 read from T0506.t2k.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)P219 (1vjlA)D82 because L (left) conformation "forbidden" or filtered. T0506 211 :RWKITSID 1vjlA 74 :KVIIHSLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=25968 # 1umwA.211.152 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)W212 (1umwA)A520 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1umwA)N527 because G (3-10) conformation "forbidden" or filtered. T0506 211 :R 1umwA 519 :S T0506 213 :KITSID 1umwA 521 :IILHLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=25970 1zsqA expands to /projects/compbio/data/pdb/1zsq.pdb.gz 1zsqA:# 1zsqA.211.197 read from T0506.t2k.many.frag # adding 1zsqA to template set # found chain 1zsqA in template set Warning: unaligning (T0506)D218 (1zsqA)H274 because P (beta_P) conformation "forbidden" or filtered. T0506 211 :RWKITSI 1zsqA 267 :IPVLSWI T0506 219 :P 1zsqA 275 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=25972 # 1ok7A.211.334 read from T0506.t2k.many.frag # found chain 1ok7A in training set T0506 211 :RWKITSIDP 1ok7A 335 :NVRMMLTDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=25973 # 2d0oA.211.407 read from T0506.t2k.many.frag # found chain 2d0oA in template set Warning: unaligning (T0506)R211 (2d0oA)P408 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (2d0oA)G415 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKITSI 2d0oA 409 :LAILDL T0506 219 :P 2d0oA 416 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=25975 # 1nrzA.211.100 read from T0506.t2k.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)D218 (1nrzA)A109 because P (beta_P) conformation "forbidden" or filtered. T0506 211 :RWKITSI 1nrzA 102 :TLNIGGM T0506 219 :P 1nrzA 110 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=25977 # 1r26A.211.67 read from T0506.t2k.many.frag # found chain 1r26A in training set Warning: unaligning (T0506)K213 (1r26A)K51 because P (beta_P) conformation "forbidden" or filtered. T0506 211 :RW 1r26A 49 :TV T0506 214 :ITSIDP 1r26A 52 :FAKVDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=25979 # 1crzA.211.173 read from T0506.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)D218 (1crzA)S187 because P (beta_P) conformation "forbidden" or filtered. T0506 211 :RWKITSI 1crzA 180 :PLMSPAW T0506 219 :P 1crzA 188 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=25981 # 1u4bA.211.524 read from T0506.t2k.many.frag # found chain 1u4bA in training set Warning: unaligning (T0506)P219 (1u4bA)H829 because T (delta_L) conformation "forbidden" or filtered. T0506 211 :RWKITSID 1u4bA 821 :QAHLLLQV Number of specific fragments extracted= 1 number of extra gaps= 1 total=25982 # 1gxrA.211.184 read from T0506.t2k.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)R211 (1gxrA)G618 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1gxrA)D623 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKIT 1gxrA 619 :ASCI T0506 217 :IDP 1gxrA 624 :ISN Number of specific fragments extracted= 2 number of extra gaps= 2 total=25984 2d13A expands to /projects/compbio/data/pdb/2d13.pdb.gz 2d13A:# 2d13A.211.140 read from T0506.t2k.many.frag # adding 2d13A to template set # found chain 2d13A in template set Warning: unaligning (T0506)K213 (2d13A)V143 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2d13A)A146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (2d13A)S148 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d13A)A149 because E (beta_S) conformation "forbidden" or filtered. T0506 211 :RW 2d13A 141 :KV T0506 214 :IT 2d13A 144 :FV T0506 217 :I 2d13A 147 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=25987 # 1ifrA.212.8 read from T0506.t2k.many.frag # found chain 1ifrA in training set T0506 212 :WKITSIDPD 1ifrA 440 :VAVEEVDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25988 # 1qhtA.212.533 read from T0506.t2k.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)D218 (1qhtA)D540 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKITSI 1qhtA 534 :FKVLYA T0506 219 :PD 1qhtA 541 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25990 # 1ux6A.212.269 read from T0506.t2k.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)K213 (1ux6A)R1073 because E (beta_S) conformation "forbidden" or filtered. T0506 212 :W 1ux6A 1072 :V T0506 214 :ITSIDPD 1ux6A 1074 :TLWHDPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=25992 # 2sak.212.60 read from T0506.t2k.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKIT 2sak 76 :FRVV T0506 217 :IDPD 2sak 81 :LDPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=25994 # 1gp0A.212.116 read from T0506.t2k.many.frag # found chain 1gp0A in training set T0506 212 :WKITSIDPD 1gp0A 1624 :PMLISLDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=25995 # 1nycA.212.54 read from T0506.t2k.many.frag # found chain 1nycA in training set T0506 212 :WKITSIDPD 1nycA 53 :YHILFIDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=25996 # 1zsqA.212.198 read from T0506.t2k.many.frag # found chain 1zsqA in template set T0506 212 :WKITSIDPD 1zsqA 268 :PVLSWIHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=25997 # 1crzA.212.174 read from T0506.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)K213 (1crzA)M182 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :W 1crzA 181 :L T0506 214 :ITSIDPD 1crzA 183 :SPAWSPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=25999 # 1rwhA.212.645 read from T0506.t2k.many.frag # found chain 1rwhA in training set T0506 212 :WKITSIDPD 1rwhA 646 :YSVIRNDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26000 # 1d2sA.212.53 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1d2sA)R72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1d2sA)G74 because T (delta_L) conformation "forbidden" or filtered. T0506 212 :WKIT 1d2sA 66 :WFML T0506 217 :I 1d2sA 71 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=26002 # 1ig0A.212.215 read from T0506.t2k.many.frag # found chain 1ig0A in training set T0506 212 :WKITSIDPD 1ig0A 216 :FKLCYMTPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26003 # 1ykdA.212.234 read from T0506.t2k.many.frag # found chain 1ykdA in template set T0506 212 :WKITSIDPD 1ykdA 292 :STLWLIDRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26004 # 1umwA.212.153 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)P219 (1umwA)N527 because G (3-10) conformation "forbidden" or filtered. T0506 212 :WKITSID 1umwA 520 :AIILHLS T0506 220 :D 1umwA 528 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26006 # 1y44A.212.264 read from T0506.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)K213 (1y44A)I266 because E (beta_S) conformation "forbidden" or filtered. T0506 212 :W 1y44A 265 :L T0506 214 :ITSIDPD 1y44A 267 :LTHISAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26008 # 1t6cA.212.139 read from T0506.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0506)S216 (1t6cA)D141 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1t6cA)G144 because L (left) conformation "forbidden" or filtered. T0506 212 :WKIT 1t6cA 137 :VCVV T0506 217 :ID 1t6cA 142 :QG T0506 220 :D 1t6cA 145 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26011 # 1r26A.212.68 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 212 :WKITSIDPD 1r26A 50 :VKFAKVDAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26012 # 1a8y.212.281 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 212 :WKITSIDPD 1a8y 282 :LSIIWIDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26013 1vqoT expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoT:# 1vqoT.212.60 read from T0506.t2k.many.frag # adding 1vqoT to template set # found chain 1vqoT in template set T0506 212 :WKITSIDPD 1vqoT 60 :GEVINVDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26014 # 1h2wA.212.289 read from T0506.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S216 (1h2wA)T294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1h2wA)E296 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1h2wA)G297 because S (epsilon) conformation "forbidden" or filtered. T0506 212 :WKIT 1h2wA 290 :YDYV T0506 217 :I 1h2wA 295 :N T0506 220 :D 1h2wA 298 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26017 # 1kwiA.212.25 read from T0506.t2k.many.frag # found chain 1kwiA in template set Warning: unaligning (T0506)D218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwiA)G71 T0506 212 :WKITSI 1kwiA 55 :YRLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26018 # 1ro7A.212.147 read from T0506.t2k.many.frag # found chain 1ro7A in training set Warning: unaligning (T0506)P219 (1ro7A)F155 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1ro7A)Y156 because L (left) conformation "forbidden" or filtered. T0506 212 :WKITSID 1ro7A 148 :IYLSGID Number of specific fragments extracted= 1 number of extra gaps= 1 total=26019 1tljA expands to /projects/compbio/data/pdb/1tlj.pdb.gz 1tljA:# 1tljA.212.128 read from T0506.t2k.many.frag # adding 1tljA to template set # found chain 1tljA in template set Warning: unaligning (T0506)K213 (1tljA)G130 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1tljA)A133 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :W 1tljA 129 :S T0506 214 :IT 1tljA 131 :IL T0506 217 :IDPD 1tljA 134 :TNQK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26022 # 1kt6A.212.103 read from T0506.t2k.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)W212 (1kt6A)H104 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1kt6A)W105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I217 (1kt6A)T109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 214 :ITS 1kt6A 106 :IID T0506 220 :D 1kt6A 112 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=26024 # 1qddA.212.75 read from T0506.t2k.many.frag # found chain 1qddA in training set T0506 212 :WKITSIDPD 1qddA 76 :VWIGLHDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26025 1wqwA expands to /projects/compbio/data/pdb/1wqw.pdb.gz 1wqwA:Skipped atom 6, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 8, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 10, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1033, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1334, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1505, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1507, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1509, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1551, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1553, because occupancy 0.500 <= existing 0.500 in 1wqwA Skipped atom 1555, because occupancy 0.500 <= existing 0.500 in 1wqwA # 1wqwA.212.201 read from T0506.t2k.many.frag # adding 1wqwA to template set # found chain 1wqwA in template set Warning: unaligning (T0506)W212 (1wqwA)G202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1wqwA 203 :IAE T0506 217 :IDPD 1wqwA 207 :IDDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26027 # 2bkxA.212.127 read from T0506.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkxA)G132 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkxA)G132 T0506 212 :WKI 2bkxA 128 :IQL T0506 217 :IDPD 2bkxA 133 :IGRN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26029 # 1vjlA.212.86 read from T0506.t2k.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)P219 (1vjlA)D82 because L (left) conformation "forbidden" or filtered. T0506 212 :WKITSID 1vjlA 75 :VIIHSLK T0506 220 :D 1vjlA 83 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=26031 # 1dp4A.212.235 read from T0506.t2k.many.frag # found chain 1dp4A in template set T0506 212 :WKITSIDPD 1dp4A 236 :YVFFHLDVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26032 # 2fb5A.212.179 read from T0506.t2k.many.frag # found chain 2fb5A in template set Warning: unaligning (T0506)W212 (2fb5A)A180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (2fb5A)S186 because P (beta_P) conformation "forbidden" or filtered. T0506 213 :KITSI 2fb5A 181 :LILVV T0506 219 :PD 2fb5A 187 :EE Number of specific fragments extracted= 2 number of extra gaps= 2 total=26034 # 2d13A.212.141 read from T0506.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0506)S216 (2d13A)A146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d13A)A149 because E (beta_S) conformation "forbidden" or filtered. T0506 212 :WKIT 2d13A 142 :VVFV T0506 217 :ID 2d13A 147 :VS T0506 220 :D 2d13A 150 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=26037 # 1ifrA.213.9 read from T0506.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0506)K213 (1ifrA)A441 because E (beta_S) conformation "forbidden" or filtered. T0506 214 :ITSIDPDG 1ifrA 442 :VEEVDEEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26038 # 1qhtA.213.534 read from T0506.t2k.many.frag # found chain 1qhtA in template set T0506 213 :KITSIDPDG 1qhtA 535 :KVLYADTDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26039 # 1ykdA.213.235 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)G221 (1ykdA)R301 because G (3-10) conformation "forbidden" or filtered. T0506 213 :KITSIDPD 1ykdA 293 :TLWLIDRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26040 # 1ux6A.213.270 read from T0506.t2k.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1ux6A 1073 :RTL T0506 217 :IDPDG 1ux6A 1077 :HDPRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26042 # 1zsqA.213.199 read from T0506.t2k.many.frag # found chain 1zsqA in template set T0506 213 :KITSIDPDG 1zsqA 269 :VLSWIHPES Number of specific fragments extracted= 1 number of extra gaps= 0 total=26043 # 1crzA.213.175 read from T0506.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)K213 (1crzA)M182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I214 (1crzA)S183 because L (left) conformation "forbidden" or filtered. T0506 215 :TSIDPDG 1crzA 184 :PAWSPDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26044 # 1vqoT.213.61 read from T0506.t2k.many.frag # found chain 1vqoT in template set T0506 213 :KITSIDPDG 1vqoT 61 :EVINVDLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26045 # 1nycA.213.55 read from T0506.t2k.many.frag # found chain 1nycA in training set T0506 213 :KITSIDPDG 1nycA 54 :HILFIDTAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26046 # 1ig0A.213.216 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D218 (1ig0A)T222 because E (beta_S) conformation "forbidden" or filtered. T0506 213 :KITSI 1ig0A 217 :KLCYM T0506 219 :PDG 1ig0A 223 :PTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26048 # 2sak.213.61 read from T0506.t2k.many.frag # found chain 2sak in training set Warning: unaligning (T0506)K213 (2sak)R77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :IT 2sak 78 :VV T0506 217 :IDPDG 2sak 81 :LDPSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=26050 # 1d2sA.213.54 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. T0506 213 :KIT 1d2sA 67 :FML T0506 217 :ID 1d2sA 71 :LR T0506 220 :DG 1d2sA 74 :GR Number of specific fragments extracted= 3 number of extra gaps= 2 total=26053 # 1wqwA.213.202 read from T0506.t2k.many.frag # found chain 1wqwA in template set T0506 213 :KITSIDPDG 1wqwA 203 :IAEDIDDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26054 # 1gp0A.213.117 read from T0506.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0506)S216 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1gp0A 1625 :MLI T0506 217 :IDPDG 1gp0A 1629 :LDKQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26056 1y96A expands to /projects/compbio/data/pdb/1y96.pdb.gz 1y96A:# 1y96A.213.32 read from T0506.t2k.many.frag # adding 1y96A to template set # found chain 1y96A in template set Warning: unaligning (T0506)G221 (1y96A)S41 because G (3-10) conformation "forbidden" or filtered. T0506 213 :KITSIDPD 1y96A 33 :WVLTTDPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26057 # 1kt6A.213.104 read from T0506.t2k.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)S216 (1kt6A)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I217 (1kt6A)T109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 213 :KIT 1kt6A 105 :WII T0506 220 :DG 1kt6A 112 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=26059 # 1umwA.213.154 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)P219 (1umwA)N527 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1umwA)G528 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1umwA)S529 because P (beta_P) conformation "forbidden" or filtered. T0506 213 :KITSID 1umwA 521 :IILHLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26060 # 1pbyB.213.137 read from T0506.t2k.many.frag # found chain 1pbyB in training set T0506 213 :KITSIDPDG 1pbyB 138 :TMLAWARDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26061 # 1rwhA.213.646 read from T0506.t2k.many.frag # found chain 1rwhA in training set Warning: unaligning (T0506)G221 (1rwhA)A655 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KITSIDPD 1rwhA 647 :SVIRNDAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26062 # 2d13A.213.142 read from T0506.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0506)S216 (2d13A)A146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d13A)A149 because E (beta_S) conformation "forbidden" or filtered. T0506 213 :KIT 2d13A 143 :VFV T0506 217 :ID 2d13A 147 :VS T0506 220 :DG 2d13A 150 :YG Number of specific fragments extracted= 3 number of extra gaps= 2 total=26065 # 1a8y.213.282 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 213 :KITSIDPDG 1a8y 283 :SIIWIDPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26066 1em2A expands to /projects/compbio/data/pdb/1em2.pdb.gz 1em2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1em2A.213.44 read from T0506.t2k.many.frag # adding 1em2A to template set # found chain 1em2A in template set Warning: unaligning (T0506)S216 (1em2A)K263 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1em2A)N265 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1em2A 260 :KFE T0506 217 :I 1em2A 264 :N T0506 219 :PDG 1em2A 266 :EYG Number of specific fragments extracted= 3 number of extra gaps= 2 total=26069 # 1yllA.213.141 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. T0506 213 :KITSID 1yllA 140 :LLLFAQ T0506 220 :DG 1yllA 147 :DG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26071 # 1h2wA.213.290 read from T0506.t2k.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S216 (1h2wA)T294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1h2wA)V299 because N (gamma') conformation "forbidden" or filtered. T0506 213 :KIT 1h2wA 291 :DYV T0506 217 :IDPD 1h2wA 295 :NEGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=26073 # 1r26A.213.69 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 213 :KITSIDPDG 1r26A 51 :KFAKVDADN Number of specific fragments extracted= 1 number of extra gaps= 0 total=26074 # 1i0vA.213.56 read from T0506.t2k.many.frag # found chain 1i0vA in training set T0506 213 :KITSIDPDG 1i0vA 57 :YEWPILSSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26075 # 2ae5B.213.177 read from T0506.t2k.many.frag # found chain 2ae5B in template set Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ae5B)N178 Warning: unaligning (T0506)D218 (2ae5B)D183 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :ITSI 2ae5B 179 :IVYA T0506 219 :PDG 2ae5B 184 :REG Number of specific fragments extracted= 2 number of extra gaps= 2 total=26077 # 1kwiA.213.26 read from T0506.t2k.many.frag # found chain 1kwiA in template set Warning: unaligning (T0506)K213 (1kwiA)R56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwiA)G71 T0506 214 :ITSI 1kwiA 57 :LLEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26078 # 1t6cA.213.140 read from T0506.t2k.many.frag # found chain 1t6cA in training set Warning: unaligning (T0506)D218 (1t6cA)G143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1t6cA)G144 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1t6cA)G145 because T (delta_L) conformation "forbidden" or filtered. T0506 213 :KITSI 1t6cA 138 :CVVDQ T0506 221 :G 1t6cA 146 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=26080 # 2bkxA.213.128 read from T0506.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkxA)G132 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkxA)G132 T0506 213 :KI 2bkxA 129 :QL T0506 217 :IDPDG 2bkxA 133 :IGRNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26082 # 1y44A.213.265 read from T0506.t2k.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)S216 (1y44A)H269 because L (left) conformation "forbidden" or filtered. T0506 213 :KIT 1y44A 266 :ILT T0506 217 :IDPDG 1y44A 270 :ISARY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26084 # 1pbyB.214.138 read from T0506.t2k.many.frag # found chain 1pbyB in training set T0506 214 :ITSIDPDGI 1pbyB 139 :MLAWARDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26085 # 1qhtA.214.535 read from T0506.t2k.many.frag # found chain 1qhtA in template set T0506 214 :ITSIDPDGI 1qhtA 536 :VLYADTDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26086 # 1ifrA.214.10 read from T0506.t2k.many.frag # found chain 1ifrA in training set T0506 214 :ITSIDPDGI 1ifrA 442 :VEEVDEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26087 # 1crzA.214.176 read from T0506.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)I214 (1crzA)S183 because L (left) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1crzA 184 :PAWSPDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26088 # 1ux6A.214.271 read from T0506.t2k.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :IT 1ux6A 1074 :TL T0506 217 :IDPDGI 1ux6A 1077 :HDPRHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26090 # 1ykdA.214.236 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)I222 (1ykdA)H302 because L (left) conformation "forbidden" or filtered. T0506 214 :ITSIDPDG 1ykdA 294 :LWLIDRDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26091 # 1wqwA.214.203 read from T0506.t2k.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :IT 1wqwA 204 :AE T0506 217 :IDPDGI 1wqwA 207 :IDDFGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26093 # 1y96A.214.33 read from T0506.t2k.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)S216 (1y96A)T36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1y96A)S41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. T0506 214 :IT 1y96A 34 :VL T0506 217 :IDPD 1y96A 37 :TDPV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26095 # 1vqoT.214.62 read from T0506.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)I222 (1vqoT)A70 because L (left) conformation "forbidden" or filtered. T0506 214 :ITSIDPDG 1vqoT 62 :VINVDLDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26096 # 1ig0A.214.217 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D218 (1ig0A)T222 because E (beta_S) conformation "forbidden" or filtered. T0506 214 :ITSI 1ig0A 218 :LCYM T0506 219 :PDGI 1ig0A 223 :PTDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26098 # 1em2A.214.45 read from T0506.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0506)D218 (1em2A)N265 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :ITSI 1em2A 261 :FEKN T0506 219 :PDGI 1em2A 266 :EYGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26100 # 1d2sA.214.55 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1d2sA)G74 because T (delta_L) conformation "forbidden" or filtered. T0506 214 :ITSID 1d2sA 68 :MLGLR T0506 221 :GI 1d2sA 75 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26102 # 1yllA.214.142 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. T0506 214 :ITSID 1yllA 141 :LLFAQ T0506 220 :DGI 1yllA 147 :DGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26104 # 1nycA.214.56 read from T0506.t2k.many.frag # found chain 1nycA in training set Warning: unaligning (T0506)G221 (1nycA)H62 because G (3-10) conformation "forbidden" or filtered. T0506 214 :ITSIDPD 1nycA 55 :ILFIDTA T0506 222 :I 1nycA 63 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=26106 # 1kt6A.214.105 read from T0506.t2k.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 214 :ITSI 1kt6A 106 :IIDT T0506 220 :DGI 1kt6A 112 :ETF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26108 # 1zsqA.214.200 read from T0506.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)I222 (1zsqA)Q278 because T (delta_L) conformation "forbidden" or filtered. T0506 214 :ITSIDPDG 1zsqA 270 :LSWIHPES Number of specific fragments extracted= 1 number of extra gaps= 1 total=26109 # 1gp0A.214.118 read from T0506.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0506)S216 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1gp0A)T1633 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1gp0A)C1634 because L (left) conformation "forbidden" or filtered. T0506 214 :IT 1gp0A 1626 :LI T0506 217 :IDPD 1gp0A 1629 :LDKQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=26111 # 2d13A.214.143 read from T0506.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0506)P219 (2d13A)A149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (2d13A)Y150 because P (beta_P) conformation "forbidden" or filtered. T0506 214 :ITSID 2d13A 144 :FVAVS T0506 221 :GI 2d13A 151 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26113 # 1km4A.214.178 read from T0506.t2k.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)S216 (1km4A)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1km4A)G183 because S (epsilon) conformation "forbidden" or filtered. T0506 214 :IT 1km4A 179 :SP T0506 217 :I 1km4A 182 :V T0506 219 :PDGI 1km4A 184 :AQGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=26116 # 2sak.214.62 read from T0506.t2k.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2sak)A85 because P (beta_P) conformation "forbidden" or filtered. T0506 214 :IT 2sak 78 :VV T0506 217 :IDPD 2sak 81 :LDPS T0506 222 :I 2sak 86 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=26119 # 1tljA.214.130 read from T0506.t2k.many.frag # found chain 1tljA in template set Warning: unaligning (T0506)S216 (1tljA)A133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1tljA)N135 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :IT 1tljA 131 :IL T0506 217 :I 1tljA 134 :T T0506 219 :PDGI 1tljA 136 :QKGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26122 # 2bkxA.214.129 read from T0506.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkxA)G132 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkxA)G132 T0506 214 :I 2bkxA 130 :L T0506 217 :IDPDGI 2bkxA 133 :IGRNGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26124 1tl2A expands to /projects/compbio/data/pdb/1tl2.pdb.gz 1tl2A:# 1tl2A.214.138 read from T0506.t2k.many.frag # adding 1tl2A to template set # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :IT 1tl2A 139 :FL T0506 217 :IDPDGI 1tl2A 142 :FHPNGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26126 # 1tl2A.214.185 read from T0506.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1tl2A)S190 because P (beta_P) conformation "forbidden" or filtered. T0506 214 :IT 1tl2A 186 :FL T0506 217 :I 1tl2A 189 :F T0506 219 :PDGI 1tl2A 191 :SVGT Number of specific fragments extracted= 3 number of extra gaps= 2 total=26129 # 2f02A.214.222 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)D218 (2f02A)G225 because S (epsilon) conformation "forbidden" or filtered. T0506 214 :ITSI 2f02A 221 :VISL T0506 219 :PDGI 2f02A 226 :KDGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26131 1rypL expands to /projects/compbio/data/pdb/1ryp.pdb.gz 1rypL:# 1rypL.214.176 read from T0506.t2k.many.frag # adding 1rypL to template set # found chain 1rypL in template set Warning: unaligning (T0506)G221 (1rypL)G184 because S (epsilon) conformation "forbidden" or filtered. T0506 214 :ITSIDPD 1rypL 177 :LYHVTED T0506 222 :I 1rypL 185 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=26133 # 1gxrA.214.187 read from T0506.t2k.many.frag # found chain 1gxrA in training set T0506 214 :ITSIDPDGI 1gxrA 621 :CIDISNDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26134 # 1umwA.214.155 read from T0506.t2k.many.frag # found chain 1umwA in template set Warning: unaligning (T0506)P219 (1umwA)N527 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1umwA)G528 because T (delta_L) conformation "forbidden" or filtered. T0506 214 :ITSID 1umwA 522 :ILHLS T0506 221 :GI 1umwA 529 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26136 # 1r26A.214.70 read from T0506.t2k.many.frag # found chain 1r26A in training set Warning: unaligning (T0506)G221 (1r26A)N59 because G (3-10) conformation "forbidden" or filtered. T0506 214 :ITSIDPD 1r26A 52 :FAKVDAD T0506 222 :I 1r26A 60 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=26138 1wycA expands to /projects/compbio/data/pdb/1wyc.pdb.gz 1wycA:# 1wycA.214.339 read from T0506.t2k.many.frag # adding 1wycA to template set # found chain 1wycA in template set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)G342 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)G342 Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. T0506 214 :I 1wycA 340 :V T0506 217 :IDP 1wycA 343 :IGI T0506 221 :GI 1wycA 347 :GQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=26141 # 1qhtA.215.536 read from T0506.t2k.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)D218 (1qhtA)D540 because Y (epsilon') conformation "forbidden" or filtered. T0506 215 :TSI 1qhtA 537 :LYA T0506 219 :PDGID 1qhtA 541 :TDGLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26143 # 1wqwA.215.204 read from T0506.t2k.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)D223 (1wqwA)L213 because P (beta_P) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1wqwA 205 :EDIDDFGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26144 # 1y96A.215.34 read from T0506.t2k.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)G221 (1y96A)S41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1y96A 35 :LTTDPV T0506 223 :D 1y96A 43 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=26146 # 1em2A.215.46 read from T0506.t2k.many.frag # found chain 1em2A in template set T0506 215 :TSIDPDGID 1em2A 262 :EKNNEYGDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26147 # 1pbyB.215.139 read from T0506.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)D223 (1pbyB)K148 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1pbyB 140 :LAWARDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26148 # 1vqoT.215.63 read from T0506.t2k.many.frag # found chain 1vqoT in template set T0506 215 :TSIDPDGID 1vqoT 63 :INVDLDKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26149 # 1yllA.215.143 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1yllA)A150 because P (beta_P) conformation "forbidden" or filtered. T0506 215 :TSID 1yllA 142 :LFAQ T0506 220 :DGI 1yllA 147 :DGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26151 # 1kt6A.215.106 read from T0506.t2k.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 215 :TSI 1kt6A 107 :IDT T0506 220 :DGID 1kt6A 112 :ETFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26153 # 2d13A.215.144 read from T0506.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0506)S216 (2d13A)A146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d13A)A149 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :T 2d13A 145 :V T0506 217 :ID 2d13A 147 :VS T0506 220 :DGID 2d13A 150 :YGLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=26156 # 1wycA.215.340 read from T0506.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)G342 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)G342 Warning: unaligning (T0506)D218 (1wycA)G344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 T0506 217 :I 1wycA 343 :I T0506 219 :P 1wycA 345 :I T0506 221 :GI 1wycA 347 :GQ Number of specific fragments extracted= 3 number of extra gaps= 4 total=26159 # 1ykdA.215.237 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)G221 (1ykdA)R301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1ykdA)H302 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1ykdA)E303 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1ykdA 295 :WLIDRD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26160 # 1ifrA.215.11 read from T0506.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0506)D223 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1ifrA 443 :EEVDEEGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26161 # 1d2sA.215.56 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1d2sA)R72 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1d2sA)G74 because T (delta_L) conformation "forbidden" or filtered. T0506 215 :T 1d2sA 69 :L T0506 217 :I 1d2sA 71 :L T0506 221 :GID 1d2sA 75 :RPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26164 # 1gp0A.215.119 read from T0506.t2k.many.frag # found chain 1gp0A in training set Warning: unaligning (T0506)G221 (1gp0A)T1633 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1gp0A)C1634 because L (left) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1gp0A 1627 :ISLDKQ T0506 223 :D 1gp0A 1635 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=26166 # 1crzA.215.177 read from T0506.t2k.many.frag # found chain 1crzA in template set T0506 215 :TSIDPDGID 1crzA 184 :PAWSPDGSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26167 # 1go3E.215.89 read from T0506.t2k.many.frag # found chain 1go3E in training set T0506 215 :TSIDPDGID 1go3E 90 :VDVVEFGSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26168 # 1tl2A.215.186 read from T0506.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F188 because Y (epsilon') conformation "forbidden" or filtered. T0506 215 :T 1tl2A 187 :L T0506 217 :IDPDGID 1tl2A 189 :FSSVGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26170 # 1tljA.215.131 read from T0506.t2k.many.frag # found chain 1tljA in template set Warning: unaligning (T0506)S216 (1tljA)A133 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1tljA)N135 because Y (epsilon') conformation "forbidden" or filtered. T0506 215 :T 1tljA 132 :L T0506 217 :I 1tljA 134 :T T0506 219 :PDGID 1tljA 136 :QKGVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26173 # 1zsqA.215.201 read from T0506.t2k.many.frag # found chain 1zsqA in template set T0506 215 :TSIDPDGID 1zsqA 271 :SWIHPESQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26174 # 1ig0A.215.218 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D223 (1ig0A)I227 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1ig0A 219 :CYMTPTDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26175 # 1qmyA.215.123 read from T0506.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)G221 (1qmyA)G158 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1qmyA)Y160 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1qmyA 152 :ACVTSN T0506 222 :I 1qmyA 159 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=26177 # 1ux6A.215.272 read from T0506.t2k.many.frag # found chain 1ux6A in template set T0506 215 :TSIDPDGID 1ux6A 1075 :LWHDPRHIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26178 2aukA expands to /projects/compbio/data/pdb/2auk.pdb.gz 2aukA:# 2aukA.215.139 read from T0506.t2k.many.frag # adding 2aukA to template set # found chain 2aukA in template set T0506 215 :TSIDPDGID 2aukA 140 :KIVDAQGND Number of specific fragments extracted= 1 number of extra gaps= 0 total=26179 # 1tl2A.215.139 read from T0506.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 215 :T 1tl2A 140 :L T0506 217 :IDPDGID 1tl2A 142 :FHPNGYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26181 # 2f02A.215.223 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)G221 (2f02A)G228 because S (epsilon) conformation "forbidden" or filtered. T0506 215 :TSIDPD 2f02A 222 :ISLGKD T0506 222 :ID 2f02A 229 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26183 1xmxA expands to /projects/compbio/data/pdb/1xmx.pdb.gz 1xmxA:# 1xmxA.215.115 read from T0506.t2k.many.frag # adding 1xmxA to template set # found chain 1xmxA in template set Warning: unaligning (T0506)D218 (1xmxA)E117 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 because of BadResidue code BAD_PEPTIDE in next template residue (1xmxA)D121 Warning: unaligning (T0506)I222 because of BadResidue code BAD_PEPTIDE at template residue (1xmxA)D121 T0506 215 :TSI 1xmxA 114 :FVV T0506 219 :PD 1xmxA 118 :PN T0506 223 :D 1xmxA 122 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=26186 # 1nycA.215.57 read from T0506.t2k.many.frag # found chain 1nycA in training set Warning: unaligning (T0506)G221 (1nycA)H62 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1nycA)Q63 because L (left) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1nycA 56 :LFIDTA T0506 223 :D 1nycA 64 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=26188 1tg7A expands to /projects/compbio/data/pdb/1tg7.pdb.gz 1tg7A:Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 4687, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 4689, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 4691, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6848, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6850, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6852, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6854, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6856, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6858, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6860, because occupancy 0.500 <= existing 0.500 in 1tg7A Skipped atom 6862, because occupancy 0.500 <= existing 0.500 in 1tg7A # 1tg7A.215.488 read from T0506.t2k.many.frag # adding 1tg7A to template set # found chain 1tg7A in template set Warning: unaligning (T0506)P219 (1tg7A)S533 because G (3-10) conformation "forbidden" or filtered. T0506 215 :TSID 1tg7A 529 :VEGS T0506 220 :DGID 1tg7A 534 :SGIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26190 # 1wthD.215.187 read from T0506.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 T0506 215 :TSID 1wthD 188 :VWQD T0506 221 :GID 1wthD 194 :GVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26192 # 2bkxA.215.130 read from T0506.t2k.many.frag # found chain 2bkxA in training set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkxA)G132 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkxA)G132 Warning: unaligning (T0506)D218 (2bkxA)G134 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkxA)G140 T0506 217 :I 2bkxA 133 :I T0506 219 :PDGI 2bkxA 135 :RNGH Number of specific fragments extracted= 2 number of extra gaps= 3 total=26194 # 1yllA.216.144 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SID 1yllA 143 :FAQ T0506 220 :DGIDL 1yllA 147 :DGVAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26196 # 1wycA.216.341 read from T0506.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)G342 Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 T0506 217 :IDP 1wycA 343 :IGI T0506 221 :GI 1wycA 347 :GQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=26198 # 1qhtA.216.537 read from T0506.t2k.many.frag # found chain 1qhtA in template set T0506 216 :SIDPDGIDL 1qhtA 538 :YADTDGLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26199 # 1go3E.216.90 read from T0506.t2k.many.frag # found chain 1go3E in training set T0506 216 :SIDPDGIDL 1go3E 91 :DVVEFGSFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26200 # 1em2A.216.47 read from T0506.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0506)D218 (1em2A)N265 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SI 1em2A 263 :KN T0506 219 :PDGIDL 1em2A 266 :EYGDTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26202 # 2f02A.216.224 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)I217 (2f02A)L224 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (2f02A)G225 because S (epsilon) conformation "forbidden" or filtered. T0506 216 :S 2f02A 223 :S T0506 219 :PDGIDL 2f02A 226 :KDGAIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26204 # 1wqwA.216.205 read from T0506.t2k.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGIDL 1wqwA 207 :IDDFGRLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26205 # 1tg7A.216.489 read from T0506.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0506)P219 (1tg7A)S533 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1tg7A)S537 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SID 1tg7A 530 :EGS T0506 220 :DGI 1tg7A 534 :SGI T0506 224 :L 1tg7A 538 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=26208 # 1pbyB.216.140 read from T0506.t2k.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)D218 (1pbyB)A143 because P (beta_P) conformation "forbidden" or filtered. T0506 216 :SI 1pbyB 141 :AW T0506 219 :PDGIDL 1pbyB 144 :RDGSKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26210 # 1vqoT.216.64 read from T0506.t2k.many.frag # found chain 1vqoT in template set T0506 216 :SIDPDGIDL 1vqoT 64 :NVDLDKAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26211 # 1y96A.216.35 read from T0506.t2k.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)S216 (1y96A)T36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1y96A)S41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1y96A)N43 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :IDPD 1y96A 37 :TDPV T0506 224 :L 1y96A 44 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=26213 # 1kt6A.216.107 read from T0506.t2k.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)I217 (1kt6A)T109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 216 :S 1kt6A 108 :D T0506 220 :DGIDL 1kt6A 112 :ETFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26215 # 1wthD.216.188 read from T0506.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)S216 (1wthD)W189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 T0506 217 :ID 1wthD 190 :QD T0506 221 :GIDL 1wthD 194 :GVNM Number of specific fragments extracted= 2 number of extra gaps= 2 total=26217 # 1tljA.216.132 read from T0506.t2k.many.frag # found chain 1tljA in template set T0506 216 :SIDPDGIDL 1tljA 133 :ATNQKGVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26218 # 1p30A.216.177 read from T0506.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)S216 (1p30A)N177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1p30A)T179 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1p30A)G182 because S (epsilon) conformation "forbidden" or filtered. T0506 217 :I 1p30A 178 :I T0506 219 :PD 1p30A 180 :KE T0506 222 :IDL 1p30A 183 :IQI Number of specific fragments extracted= 3 number of extra gaps= 3 total=26221 # 1d2sA.216.57 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S216 (1d2sA)G70 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1d2sA)G74 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1d2sA)R75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1d2sA)E77 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :ID 1d2sA 71 :LR T0506 222 :I 1d2sA 76 :P T0506 224 :L 1d2sA 78 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=26224 # 1ykdA.216.238 read from T0506.t2k.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)I222 (1ykdA)H302 because L (left) conformation "forbidden" or filtered. T0506 216 :SIDPDG 1ykdA 296 :LIDRDR T0506 223 :DL 1ykdA 303 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26226 # 1qmyA.216.124 read from T0506.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)D218 (1qmyA)T155 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SI 1qmyA 153 :CV T0506 219 :PDGIDL 1qmyA 156 :SNGWYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26228 # 1nkiA.216.31 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)D218 (1nkiA)W34 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SI 1nkiA 32 :AR T0506 219 :PDGIDL 1nkiA 35 :DQGAYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26230 # 2d13A.216.145 read from T0506.t2k.many.frag # found chain 2d13A in template set Warning: unaligning (T0506)S216 (2d13A)A146 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d13A)A149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (2d13A)N153 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :ID 2d13A 147 :VS T0506 220 :DGI 2d13A 150 :YGL T0506 224 :L 2d13A 154 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=26233 # 1crzA.216.178 read from T0506.t2k.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)D218 (1crzA)S187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1crzA)S191 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1crzA)K192 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SI 1crzA 185 :AW T0506 219 :PDG 1crzA 188 :PDG T0506 224 :L 1crzA 193 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=26236 # 1tl2A.216.187 read from T0506.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)D218 (1tl2A)S190 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1tl2A)L195 because P (beta_P) conformation "forbidden" or filtered. T0506 216 :SI 1tl2A 188 :FF T0506 219 :PDGI 1tl2A 191 :SVGT T0506 224 :L 1tl2A 196 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=26239 # 1yarA.216.139 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)S216 (1yarA)G140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1yarA)D142 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1yarA)G145 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :I 1yarA 141 :I T0506 219 :PD 1yarA 143 :QI T0506 222 :IDL 1yarA 146 :PRL Number of specific fragments extracted= 3 number of extra gaps= 3 total=26242 # 1u7iA.216.120 read from T0506.t2k.many.frag # found chain 1u7iA in training set T0506 216 :SIDPDGIDL 1u7iA 119 :LADRFGVSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26243 # 1ifrA.216.12 read from T0506.t2k.many.frag # found chain 1ifrA in training set Warning: unaligning (T0506)D223 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SIDPDGI 1ifrA 444 :EVDEEGK T0506 224 :L 1ifrA 452 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26245 # 1gxrA.216.189 read from T0506.t2k.many.frag # found chain 1gxrA in training set T0506 216 :SIDPDGIDL 1gxrA 623 :DISNDGTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26246 # 1c7kA.216.46 read from T0506.t2k.many.frag # found chain 1c7kA in training set Warning: unaligning (T0506)S216 (1c7kA)G47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1c7kA)Y54 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGI 1c7kA 48 :NDSRGS T0506 224 :L 1c7kA 55 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=26248 # 1gxuA.216.39 read from T0506.t2k.many.frag # found chain 1gxuA in training set Warning: unaligning (T0506)S216 (1gxuA)C40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1gxuA)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 217 :ID 1gxuA 41 :ND T0506 220 :DGIDL 1gxuA 44 :DGVEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26250 # 1ntvA.216.65 read from T0506.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)D218 (1ntvA)S90 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SI 1ntvA 88 :TI T0506 219 :PDGIDL 1ntvA 91 :FGGIKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26252 1wv3A expands to /projects/compbio/data/pdb/1wv3.pdb.gz 1wv3A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wv3A.216.164 read from T0506.t2k.many.frag # adding 1wv3A to template set # found chain 1wv3A in template set T0506 216 :SIDPDGIDL 1wv3A 165 :EVQADGLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26253 # 1yllA.217.145 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1yllA)A150 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :ID 1yllA 144 :AQ T0506 220 :DGI 1yllA 147 :DGV T0506 224 :LA 1yllA 151 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26256 # 2f02A.217.225 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)D218 (2f02A)G225 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2f02A)G228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (2f02A)I230 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 2f02A 224 :L T0506 219 :PD 2f02A 226 :KD T0506 222 :I 2f02A 229 :A T0506 224 :LA 2f02A 231 :AK Number of specific fragments extracted= 4 number of extra gaps= 3 total=26260 # 1tg7A.217.490 read from T0506.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0506)P219 (1tg7A)S533 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1tg7A)S534 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :ID 1tg7A 531 :GS T0506 221 :GIDLA 1tg7A 535 :GISSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26262 # 1wycA.217.342 read from T0506.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 T0506 217 :IDP 1wycA 343 :IGI T0506 221 :GI 1wycA 347 :GQ T0506 225 :A 1wycA 351 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=26265 # 1go3E.217.91 read from T0506.t2k.many.frag # found chain 1go3E in training set T0506 217 :IDPDGIDLA 1go3E 92 :VVEFGSFVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26266 # 1d2sA.217.58 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. T0506 217 :ID 1d2sA 71 :LR T0506 220 :DGIDLA 1d2sA 74 :GRPEIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26268 # 1wqwA.217.206 read from T0506.t2k.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)D223 (1wqwA)L213 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :IDPDGI 1wqwA 207 :IDDFGR T0506 224 :LA 1wqwA 214 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=26270 # 1nkiA.217.32 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)G221 (1nkiA)G37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1nkiA)A38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1nkiA)E41 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :IDPD 1nkiA 33 :RWDQ T0506 223 :DL 1nkiA 39 :YL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26272 # 1em2A.217.48 read from T0506.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0506)D218 (1em2A)N265 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :I 1em2A 264 :N T0506 219 :PDGIDLA 1em2A 266 :EYGDTVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26274 # 1qhtA.217.538 read from T0506.t2k.many.frag # found chain 1qhtA in template set T0506 217 :IDPDGIDLA 1qhtA 539 :ADTDGLHAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26275 # 1gxuA.217.40 read from T0506.t2k.many.frag # found chain 1gxuA in training set Warning: unaligning (T0506)P219 (1gxuA)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 217 :ID 1gxuA 41 :ND T0506 220 :DGIDLA 1gxuA 44 :DGVEVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26277 2fa8A expands to /projects/compbio/data/pdb/2fa8.pdb.gz 2fa8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 546, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 548, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 550, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 552, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 554, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 556, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 558, because occupancy 0.500 <= existing 0.500 in 2fa8A Skipped atom 560, because occupancy 0.500 <= existing 0.500 in 2fa8A # 2fa8A.217.46 read from T0506.t2k.many.frag # adding 2fa8A to template set # found chain 2fa8A in template set Warning: unaligning (T0506)D218 (2fa8A)T46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2fa8A)G47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (2fa8A)G48 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2fa8A)L49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (2fa8A)E51 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 2fa8A 45 :S T0506 222 :I 2fa8A 50 :F T0506 224 :LA 2fa8A 52 :IT Number of specific fragments extracted= 3 number of extra gaps= 2 total=26280 # 1txlA.217.108 read from T0506.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)P219 (1txlA)D111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1txlA)G112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1txlA)H117 because D (zeta) conformation "forbidden" or filtered. T0506 217 :ID 1txlA 109 :IE T0506 221 :GIDL 1txlA 113 :IVEF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26282 # 2ayh.217.150 read from T0506.t2k.many.frag # found chain 2ayh in training set T0506 217 :IDPDGIDLA 2ayh 151 :WQPGYIKWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26283 # 1qmyA.217.125 read from T0506.t2k.many.frag # found chain 1qmyA in template set T0506 217 :IDPDGIDLA 1qmyA 154 :VTSNGWYAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26284 1vraB expands to /projects/compbio/data/pdb/1vra.pdb.gz 1vraB:Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1702, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1704, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1817, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 1819, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2236, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2238, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2240, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2242, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2244, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2735, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2737, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2739, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2741, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2743, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2856, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2858, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2860, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2970, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2972, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2974, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2976, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2978, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2980, because occupancy 0.500 <= existing 0.500 in 1vraB Skipped atom 2982, because occupancy 0.500 <= existing 0.500 in 1vraB # 1vraB.217.143 read from T0506.t2k.many.frag # adding 1vraB to template set # found chain 1vraB in template set Warning: unaligning (T0506)G221 (1vraB)T344 because D (zeta) conformation "forbidden" or filtered. T0506 217 :IDPD 1vraB 340 :VNQE T0506 222 :IDLA 1vraB 345 :IDIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26286 # 1pbyB.217.141 read from T0506.t2k.many.frag # found chain 1pbyB in training set T0506 217 :IDPDGIDLA 1pbyB 142 :WARDGSKLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26287 # 1y96A.217.36 read from T0506.t2k.many.frag # found chain 1y96A in template set T0506 217 :IDPDGIDLA 1y96A 37 :TDPVSANIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26288 # 1kt6A.217.108 read from T0506.t2k.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 Warning: unaligning (T0506)D223 (1kt6A)A115 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 1kt6A 109 :T T0506 220 :DGI 1kt6A 112 :ETF T0506 224 :LA 1kt6A 116 :VQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=26291 # 1vqoT.217.65 read from T0506.t2k.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)I222 (1vqoT)A70 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1vqoT)V71 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :IDPDG 1vqoT 65 :VDLDK T0506 224 :LA 1vqoT 72 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26293 # 1tljA.217.133 read from T0506.t2k.many.frag # found chain 1tljA in template set Warning: unaligning (T0506)D218 (1tljA)N135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1tljA)L140 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :I 1tljA 134 :T T0506 219 :PDGI 1tljA 136 :QKGV T0506 224 :LA 1tljA 141 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26296 # 1kjlA.217.99 read from T0506.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0506)G221 (1kjlA)H208 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPD 1kjlA 204 :VEPD T0506 222 :IDLA 1kjlA 209 :FKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26298 # 1wv3A.217.165 read from T0506.t2k.many.frag # found chain 1wv3A in template set Warning: unaligning (T0506)D218 (1wv3A)Q167 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1wv3A)L174 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 1wv3A 166 :V T0506 219 :PDGIDL 1wv3A 168 :ADGLNV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26300 # 1wthD.217.189 read from T0506.t2k.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 Warning: unaligning (T0506)A225 (1wthD)M198 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :ID 1wthD 190 :QD T0506 221 :GIDL 1wthD 194 :GVNM Number of specific fragments extracted= 2 number of extra gaps= 2 total=26302 # 1wd3A.217.389 read from T0506.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)P219 (1wd3A)T409 because D (zeta) conformation "forbidden" or filtered. T0506 217 :ID 1wd3A 407 :VD T0506 220 :DGIDLA 1wd3A 410 :PGSYIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26304 # 1tl2A.217.188 read from T0506.t2k.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)D218 (1tl2A)S190 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :I 1tl2A 189 :F T0506 219 :PDGIDLA 1tl2A 191 :SVGTLFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26306 # 1jiwI.217.62 read from T0506.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0506)D218 (1jiwI)T64 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 1jiwI 63 :P T0506 219 :PDGIDLA 1jiwI 65 :PAGIALL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26308 # 1wrrA.217.134 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)D218 (1wrrA)E136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1wrrA)G137 because T (delta_L) conformation "forbidden" or filtered. T0506 217 :I 1wrrA 135 :V T0506 220 :DGIDLA 1wrrA 138 :KGIDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26310 # 1p30A.217.178 read from T0506.t2k.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)A225 (1p30A)G186 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGIDL 1p30A 178 :ITKEGIQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26311 # 1vkpA.217.167 read from T0506.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0506)P219 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1vkpA)V176 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :ID 1vkpA 168 :VD T0506 220 :DGIDL 1vkpA 171 :EGTCL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26313 # 2f02A.218.226 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)D218 (2f02A)G225 because S (epsilon) conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 2f02A 226 :KDGAIAKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=26314 # 1yllA.218.146 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :D 1yllA 145 :Q T0506 220 :DGIDLAS 1yllA 147 :DGVAISL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26316 # 1tg7A.218.491 read from T0506.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0506)P219 (1tg7A)S533 because G (3-10) conformation "forbidden" or filtered. T0506 218 :D 1tg7A 532 :S T0506 220 :DGIDLAS 1tg7A 534 :SGISSKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26318 # 1wycA.218.343 read from T0506.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D218 (1wycA)G344 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 T0506 219 :P 1wycA 345 :I T0506 221 :GI 1wycA 347 :GQ T0506 225 :AS 1wycA 351 :WL Number of specific fragments extracted= 3 number of extra gaps= 3 total=26321 # 1go3E.218.92 read from T0506.t2k.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)D218 (1go3E)V93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1go3E)G96 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PD 1go3E 94 :EF T0506 222 :IDLAS 1go3E 97 :SFVRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26323 # 1wqwA.218.207 read from T0506.t2k.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)D223 (1wqwA)L213 because P (beta_P) conformation "forbidden" or filtered. T0506 218 :DPDGI 1wqwA 208 :DDFGR T0506 224 :LAS 1wqwA 214 :IIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26325 # 2fa8A.218.47 read from T0506.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0506)P219 (2fa8A)G47 because L (left) conformation "forbidden" or filtered. T0506 218 :D 2fa8A 46 :T T0506 220 :DGIDLAS 2fa8A 48 :GLFEITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26327 # 1nkiA.218.33 read from T0506.t2k.many.frag # found chain 1nkiA in training set T0506 218 :DPDGIDLAS 1nkiA 34 :WDQGAYLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26328 # 1vraB.218.144 read from T0506.t2k.many.frag # found chain 1vraB in template set T0506 218 :DPDGIDLAS 1vraB 341 :NQETIDIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26329 # 1qmyA.218.126 read from T0506.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)A225 (1qmyA)I162 because D (zeta) conformation "forbidden" or filtered. T0506 218 :DPDGIDL 1qmyA 155 :TSNGWYA T0506 226 :S 1qmyA 163 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26331 # 1d2sA.218.59 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1d2sA)G74 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1d2sA)E77 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :D 1d2sA 72 :R T0506 221 :GI 1d2sA 75 :RP T0506 224 :LAS 1d2sA 78 :IQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26334 # 1gxuA.218.41 read from T0506.t2k.many.frag # found chain 1gxuA in training set Warning: unaligning (T0506)P219 (1gxuA)G43 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1gxuA)G45 because S (epsilon) conformation "forbidden" or filtered. T0506 218 :D 1gxuA 42 :D T0506 220 :D 1gxuA 44 :D T0506 222 :IDLAS 1gxuA 46 :VEVRL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26337 # 1txlA.218.109 read from T0506.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)D218 (1txlA)E110 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1txlA)D111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1txlA)G112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1txlA)H117 because D (zeta) conformation "forbidden" or filtered. T0506 221 :GIDL 1txlA 113 :IVEF T0506 226 :S 1txlA 118 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=26339 # 1em2A.218.49 read from T0506.t2k.many.frag # found chain 1em2A in template set Warning: unaligning (T0506)D218 (1em2A)N265 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 1em2A 266 :EYGDTVYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26340 # 1szwA.218.240 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)P219 (1szwA)V220 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :D 1szwA 219 :V T0506 220 :DGIDLAS 1szwA 221 :DGDALQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26342 1k3bA expands to /projects/compbio/data/pdb/1k3b.pdb.gz 1k3bA:# 1k3bA.218.63 read from T0506.t2k.many.frag # adding 1k3bA to template set # found chain 1k3bA in template set Warning: unaligning (T0506)D218 (1k3bA)Y64 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1k3bA)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1k3bA)E69 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :DGI 1k3bA 66 :QGF T0506 224 :LAS 1k3bA 70 :IVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26344 # 1vkpA.218.168 read from T0506.t2k.many.frag # found chain 1vkpA in training set Warning: unaligning (T0506)P219 (1vkpA)G170 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1vkpA)V176 because Y (epsilon') conformation "forbidden" or filtered. T0506 218 :D 1vkpA 169 :D T0506 220 :DGIDL 1vkpA 171 :EGTCL T0506 226 :S 1vkpA 177 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26347 # 1y96A.218.37 read from T0506.t2k.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. T0506 218 :DPDG 1y96A 38 :DPVS T0506 223 :DLAS 1y96A 43 :NIVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26349 # 1qhtA.218.539 read from T0506.t2k.many.frag # found chain 1qhtA in template set T0506 218 :DPDGIDLAS 1qhtA 540 :DTDGLHATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26350 # 1yarA.218.141 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)D223 (1yarA)R147 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :DPDGI 1yarA 142 :DQIGP T0506 224 :LAS 1yarA 148 :LFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26352 # 2ayh.218.151 read from T0506.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0506)D218 (2ayh)Q152 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 2ayh 153 :PGYIKWYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26353 2aenA expands to /projects/compbio/data/pdb/2aen.pdb.gz 2aenA:Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 159, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 434, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 436, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 438, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 440, because occupancy 0.500 <= existing 0.500 in 2aenA Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 2aenA # 2aenA.218.132 read from T0506.t2k.many.frag # adding 2aenA to template set # found chain 2aenA in template set T0506 218 :DPDGIDLAS 2aenA 192 :DLNNISIII Number of specific fragments extracted= 1 number of extra gaps= 0 total=26354 # 1qwnA.218.679 read from T0506.t2k.many.frag # found chain 1qwnA in training set T0506 218 :DPDGIDLAS 1qwnA 680 :VGNGPTLAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26355 # 1jiwI.218.63 read from T0506.t2k.many.frag # found chain 1jiwI in training set T0506 218 :DPDGIDLAS 1jiwI 64 :TPAGIALLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26356 # 1wv3A.218.166 read from T0506.t2k.many.frag # found chain 1wv3A in template set Warning: unaligning (T0506)D218 (1wv3A)Q167 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 1wv3A 168 :ADGLNVLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26357 # 1wd3A.218.390 read from T0506.t2k.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)P219 (1wd3A)T409 because D (zeta) conformation "forbidden" or filtered. T0506 218 :D 1wd3A 408 :D T0506 220 :DGIDLAS 1wd3A 410 :PGSYIRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26359 # 1ntvA.218.67 read from T0506.t2k.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)D218 (1ntvA)S90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1ntvA)F97 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PDGIDL 1ntvA 91 :FGGIKI T0506 226 :S 1ntvA 98 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=26361 # 1wrrA.218.135 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)D218 (1wrrA)E136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1wrrA)G137 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1wrrA)G139 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1wrrA)D141 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :D 1wrrA 138 :K T0506 222 :I 1wrrA 140 :I T0506 224 :LAS 1wrrA 142 :IKS Number of specific fragments extracted= 3 number of extra gaps= 3 total=26364 # 1kjlA.218.100 read from T0506.t2k.many.frag # found chain 1kjlA in template set Warning: unaligning (T0506)D223 (1kjlA)K210 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :DPDGI 1kjlA 205 :EPDHF T0506 224 :LAS 1kjlA 211 :VAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26366 # 2f1lA.218.116 read from T0506.t2k.many.frag # found chain 2f1lA in template set T0506 218 :DPDGIDLAS 2f1lA 105 :QLEGLKVID Number of specific fragments extracted= 1 number of extra gaps= 0 total=26367 # 2f02A.219.227 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)G221 (2f02A)G228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (2f02A)A229 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PD 2f02A 226 :KD T0506 223 :DLASA 2f02A 230 :IAKHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=26369 # 1yllA.219.147 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1yllA 147 :DGVAISL Number of specific fragments extracted= 1 number of extra gaps= 2 total=26370 # 1szwA.219.241 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)P219 (1szwA)V220 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 1szwA 221 :DGDALQLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26371 # 1go3E.219.93 read from T0506.t2k.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)D223 (1go3E)F98 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PDGI 1go3E 94 :EFGS T0506 224 :LAS 1go3E 99 :VRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26373 # 2fa8A.219.48 read from T0506.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0506)P219 (2fa8A)G47 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 2fa8A 48 :GLFEITVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26374 # 1nkiA.219.34 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)G221 (1nkiA)G37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 219 :PD 1nkiA 35 :DQ T0506 222 :IDLAS 1nkiA 38 :AYLEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26376 # 1wycA.219.344 read from T0506.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 Warning: unaligning (T0506)A225 (1wycA)W351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1wycA)D353 because D (zeta) conformation "forbidden" or filtered. T0506 219 :PDGI 1wycA 345 :IHGQ T0506 226 :S 1wycA 352 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=26378 # 1d2sA.219.60 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)P219 (1d2sA)D73 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 1d2sA 74 :GRPEIQLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=26379 # 1tg7A.219.492 read from T0506.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0506)P219 (1tg7A)S533 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1tg7A)S537 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1tg7A)V541 because D (zeta) conformation "forbidden" or filtered. T0506 220 :DGI 1tg7A 534 :SGI T0506 224 :LAS 1tg7A 538 :SKK Number of specific fragments extracted= 2 number of extra gaps= 3 total=26381 # 1vraB.219.145 read from T0506.t2k.many.frag # found chain 1vraB in template set Warning: unaligning (T0506)G221 (1vraB)T344 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1vraB)G350 because S (epsilon) conformation "forbidden" or filtered. T0506 219 :PD 1vraB 342 :QE T0506 222 :IDLAS 1vraB 345 :IDIAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26383 # 1qmyA.219.127 read from T0506.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)A225 (1qmyA)I162 because D (zeta) conformation "forbidden" or filtered. T0506 219 :PDGIDL 1qmyA 156 :SNGWYA T0506 226 :SA 1qmyA 163 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26385 # 1jiwI.219.64 read from T0506.t2k.many.frag # found chain 1jiwI in training set T0506 219 :PDGIDLASA 1jiwI 65 :PAGIALLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=26386 # 1m0wA.219.264 read from T0506.t2k.many.frag # found chain 1m0wA in training set T0506 219 :PDGIDLASA 1m0wA 265 :DKTGKLFIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=26387 # 1k3bA.219.64 read from T0506.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)P219 (1k3bA)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1k3bA 66 :QGFEIVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=26388 2b59B expands to /projects/compbio/data/pdb/2b59.pdb.gz 2b59B:# 2b59B.219.29 read from T0506.t2k.many.frag # adding 2b59B to template set # found chain 2b59B in template set Warning: unaligning (T0506)P219 (2b59B)K30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (2b59B)A31 because P (beta_P) conformation "forbidden" or filtered. T0506 221 :GIDLASA 2b59B 32 :GFKVEIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26389 # 2f1lA.219.117 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)D223 (2f1lA)K110 because P (beta_P) conformation "forbidden" or filtered. T0506 219 :PDGI 2f1lA 106 :LEGL T0506 224 :LASA 2f1lA 111 :VIDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=26391 # 1txlA.219.110 read from T0506.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)P219 (1txlA)D111 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1txlA)G112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1txlA)H117 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1txlA)N119 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :GIDL 1txlA 113 :IVEF T0506 226 :S 1txlA 118 :R Number of specific fragments extracted= 2 number of extra gaps= 3 total=26393 # 2ayh.219.152 read from T0506.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0506)G221 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (2ayh)K157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (2ayh)Y159 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2ayh)D161 because L (left) conformation "forbidden" or filtered. T0506 219 :PD 2ayh 153 :PG T0506 222 :I 2ayh 156 :I T0506 224 :L 2ayh 158 :W T0506 226 :S 2ayh 160 :V Number of specific fragments extracted= 4 number of extra gaps= 4 total=26397 # 1wqwA.219.208 read from T0506.t2k.many.frag # found chain 1wqwA in template set T0506 219 :PDGIDLASA 1wqwA 209 :DFGRLIIRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26398 # 1o4yA.219.195 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)A227 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 1o4yA 212 :PFTLEYYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=26399 # 2aenA.219.133 read from T0506.t2k.many.frag # found chain 2aenA in template set Warning: unaligning (T0506)G221 (2aenA)N195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2aenA)H201 because G (3-10) conformation "forbidden" or filtered. T0506 219 :PD 2aenA 193 :LN T0506 222 :IDLAS 2aenA 196 :ISIII Number of specific fragments extracted= 2 number of extra gaps= 2 total=26401 # 1gxuA.219.42 read from T0506.t2k.many.frag # found chain 1gxuA in training set Warning: unaligning (T0506)P219 (1gxuA)G43 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 1gxuA 44 :DGVEVRLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26402 # 1yarA.219.142 read from T0506.t2k.many.frag # found chain 1yarA in template set Warning: unaligning (T0506)A225 (1yarA)F149 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PDGIDL 1yarA 143 :QIGPRL T0506 226 :SA 1yarA 150 :DC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26404 # 1wrrA.219.136 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)P219 (1wrrA)G137 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1wrrA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1wrrA 138 :KGIDIKS Number of specific fragments extracted= 1 number of extra gaps= 2 total=26405 # 2f9hA.219.55 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)P219 (2f9hA)A53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (2f9hA)E54 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2f9hA)G61 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :GIDLAS 2f9hA 55 :GDHLKI Number of specific fragments extracted= 1 number of extra gaps= 2 total=26406 # 1wv3A.219.167 read from T0506.t2k.many.frag # found chain 1wv3A in template set T0506 219 :PDGIDLASA 1wv3A 168 :ADGLNVLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26407 # 1qwnA.219.680 read from T0506.t2k.many.frag # found chain 1qwnA in training set Warning: unaligning (T0506)P219 (1qwnA)G681 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 1qwnA 682 :NGPTLAFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26408 # 1s2oA.219.65 read from T0506.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0506)P219 (1s2oA)A66 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1s2oA)V67 because L (left) conformation "forbidden" or filtered. T0506 221 :GIDLASA 1s2oA 68 :GSEIYHP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26409 # 1em2A.219.50 read from T0506.t2k.many.frag # found chain 1em2A in template set T0506 219 :PDGIDLASA 1em2A 266 :EYGDTVYTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26410 # 1v5vA.219.326 read from T0506.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0506)P219 (1v5vA)R327 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1v5vA)E328 because P (beta_P) conformation "forbidden" or filtered. T0506 221 :GIDLASA 1v5vA 329 :GYKVYAN Number of specific fragments extracted= 1 number of extra gaps= 1 total=26411 # 2f02A.220.228 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 2f02A 227 :DGAIAKH T0506 228 :S 2f02A 235 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26413 # 1yllA.220.148 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1yllA)G155 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1yllA 147 :DGVAISL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26414 # 1szwA.220.242 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)S228 (1szwA)G229 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 1szwA 221 :DGDALQLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26415 # 2fa8A.220.49 read from T0506.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0506)A227 (2fa8A)D55 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 2fa8A 48 :GLFEITV T0506 228 :S 2fa8A 56 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26417 # 1d2sA.220.61 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)G221 (1d2sA)R75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1d2sA)N82 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :D 1d2sA 74 :G T0506 222 :IDLASA 1d2sA 76 :PEIQLH Number of specific fragments extracted= 2 number of extra gaps= 2 total=26419 # 1go3E.220.94 read from T0506.t2k.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1go3E 95 :FGSFVRL T0506 228 :S 1go3E 103 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=26421 # 1nkiA.220.35 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1nkiA 36 :QGAYLEL T0506 228 :S 1nkiA 44 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=26423 # 1jiwI.220.65 read from T0506.t2k.many.frag # found chain 1jiwI in training set T0506 220 :DGIDLASAS 1jiwI 66 :AGIALLERG Number of specific fragments extracted= 1 number of extra gaps= 0 total=26424 # 1qmyA.220.128 read from T0506.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)D223 (1qmyA)Y160 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :DGI 1qmyA 157 :NGW T0506 224 :LASAS 1qmyA 161 :AIDDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26426 # 2b59B.220.30 read from T0506.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0506)D223 (2b59B)K34 because P (beta_P) conformation "forbidden" or filtered. T0506 220 :DGI 2b59B 31 :AGF T0506 224 :LASAS 2b59B 35 :VEIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26428 # 1txlA.220.111 read from T0506.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)A225 (1txlA)H117 because D (zeta) conformation "forbidden" or filtered. T0506 220 :DGIDL 1txlA 112 :GIVEF T0506 226 :SAS 1txlA 118 :RNN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26430 # 1k3bA.220.65 read from T0506.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)I222 (1k3bA)F68 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :DG 1k3bA 66 :QG T0506 223 :DLASAS 1k3bA 69 :EIVLND Number of specific fragments extracted= 2 number of extra gaps= 1 total=26432 # 1wycA.220.345 read from T0506.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 Warning: unaligning (T0506)A227 (1wycA)D353 because D (zeta) conformation "forbidden" or filtered. T0506 221 :GI 1wycA 347 :GQ T0506 225 :AS 1wycA 351 :WL T0506 228 :S 1wycA 354 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=26435 # 1o4yA.220.196 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)A227 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1o4yA 213 :FTLEYYI T0506 228 :S 1o4yA 221 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26437 # 1tg7A.220.493 read from T0506.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0506)D223 (1tg7A)S537 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :DGI 1tg7A 534 :SGI T0506 224 :LASAS 1tg7A 538 :SKKVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26439 # 1m0wA.220.265 read from T0506.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0506)D223 (1m0wA)K269 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1m0wA)F271 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :DGI 1m0wA 266 :KTG T0506 224 :L 1m0wA 270 :L T0506 226 :SAS 1m0wA 272 :IRD Number of specific fragments extracted= 3 number of extra gaps= 2 total=26442 # 2ayh.220.153 read from T0506.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0506)A227 (2ayh)D161 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 2ayh 154 :GYIKWYV T0506 228 :S 2ayh 162 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26444 # 2f1lA.220.118 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)A225 (2f1lA)I112 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :DGIDL 2f1lA 107 :EGLKV T0506 226 :SAS 2f1lA 113 :DQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26446 # 1vraB.220.146 read from T0506.t2k.many.frag # found chain 1vraB in template set Warning: unaligning (T0506)A227 (1vraB)G350 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1vraB 343 :ETIDIAI T0506 228 :S 1vraB 351 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=26448 # 1jakA.220.97 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)G221 (1jakA)G93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1jakA)Y94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1jakA)G99 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :D 1jakA 92 :E T0506 223 :DLAS 1jakA 95 :RLDS T0506 228 :S 1jakA 100 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=26451 # 1s2oA.220.66 read from T0506.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0506)D220 (1s2oA)V67 because L (left) conformation "forbidden" or filtered. T0506 221 :GIDLASAS 1s2oA 68 :GSEIYHPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26452 # 1g6sA.220.354 read from T0506.t2k.many.frag # found chain 1g6sA in training set T0506 220 :DGIDLASAS 1g6sA 355 :VGAEVEEGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26453 # 1ntvA.220.69 read from T0506.t2k.many.frag # found chain 1ntvA in training set T0506 220 :DGIDLASAS 1ntvA 92 :GGIKIFDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26454 # 1v5vA.220.327 read from T0506.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0506)D223 (1v5vA)K331 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1v5vA)N335 because L (left) conformation "forbidden" or filtered. T0506 220 :DGI 1v5vA 328 :EGY T0506 224 :LAS 1v5vA 332 :VYA T0506 228 :S 1v5vA 336 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=26457 # 2f9hA.220.56 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)A227 (2f9hA)G61 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 2f9hA 54 :EGDHLKI T0506 228 :S 2f9hA 62 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=26459 # 1tueB.220.162 read from T0506.t2k.many.frag # found chain 1tueB in template set Warning: unaligning (T0506)D223 (1tueB)Y163 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1tueB)G168 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGI 1tueB 160 :RGL T0506 224 :LASA 1tueB 164 :YVKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=26461 # 1wrrA.220.137 read from T0506.t2k.many.frag # found chain 1wrrA in training set Warning: unaligning (T0506)A227 (1wrrA)S145 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1wrrA 138 :KGIDIKS T0506 228 :S 1wrrA 146 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26463 1huxA expands to /projects/compbio/data/pdb/1hux.pdb.gz 1huxA:# 1huxA.220.105 read from T0506.t2k.many.frag # adding 1huxA to template set # found chain 1huxA in template set Warning: unaligning (T0506)D220 (1huxA)Q106 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1huxA)D107 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLASAS 1huxA 108 :VKVIHVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=26464 2f69A expands to /projects/compbio/data/pdb/2f69.pdb.gz 2f69A:Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 476, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 478, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 482, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 484, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 494, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 496, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 498, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 500, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 502, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 504, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 506, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1129, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1198, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1713, because occupancy 0.500 <= existing 0.500 in 2f69A Skipped atom 1715, because occupancy 0.500 <= existing 0.500 in 2f69A # 2f69A.220.72 read from T0506.t2k.many.frag # adding 2f69A to template set # found chain 2f69A in template set Warning: unaligning (T0506)D220 (2f69A)G178 because T (delta_L) conformation "forbidden" or filtered. T0506 221 :GIDLASAS 2f69A 179 :RPHFELMP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26465 1sacA expands to /projects/compbio/data/pdb/1sac.pdb.gz 1sacA:# 1sacA.220.185 read from T0506.t2k.many.frag # adding 1sacA to template set # found chain 1sacA in template set Warning: unaligning (T0506)A227 (1sacA)R193 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1sacA 186 :QALNYEI T0506 228 :S 1sacA 194 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26467 # 2f02A.221.229 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)G221 (2f02A)G228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2f02A)D235 because G (3-10) conformation "forbidden" or filtered. T0506 222 :IDLAS 2f02A 229 :AIAKH T0506 229 :D 2f02A 236 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=26469 # 1szwA.221.243 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)D223 (1szwA)A224 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GI 1szwA 222 :GD T0506 224 :LASASD 1szwA 225 :LQLAGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26471 # 1yllA.221.149 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)D223 (1yllA)A150 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. T0506 221 :GI 1yllA 148 :GV T0506 224 :LAS 1yllA 151 :ISL T0506 228 :SD 1yllA 155 :GQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=26474 # 1nkiA.221.36 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)G221 (1nkiA)G37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1nkiA)A38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1nkiA)L42 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1nkiA)L45 because P (beta_P) conformation "forbidden" or filtered. T0506 223 :DLA 1nkiA 39 :YLE T0506 228 :S 1nkiA 44 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=26476 # 1go3E.221.95 read from T0506.t2k.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1go3E)L104 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1go3E 96 :GSFVRL T0506 228 :S 1go3E 103 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=26478 # 2fa8A.221.50 read from T0506.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0506)G221 (2fa8A)L49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2fa8A)D55 because L (left) conformation "forbidden" or filtered. T0506 222 :IDLAS 2fa8A 50 :FEITV T0506 228 :SD 2fa8A 56 :GT Number of specific fragments extracted= 2 number of extra gaps= 2 total=26480 # 1d2sA.221.62 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S228 (1d2sA)N82 because Y (epsilon') conformation "forbidden" or filtered. T0506 221 :GIDLASA 1d2sA 75 :RPEIQLH T0506 229 :D 1d2sA 83 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=26482 # 1k3bA.221.66 read from T0506.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1k3bA)Y75 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1k3bA 67 :GFEIVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26483 # 1txlA.221.112 read from T0506.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)A227 (1txlA)N119 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1txlA 113 :IVEFHR T0506 228 :SD 1txlA 120 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26485 # 2b59B.221.31 read from T0506.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0506)D223 (2b59B)K34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2b59B)G39 because T (delta_L) conformation "forbidden" or filtered. T0506 221 :GI 2b59B 32 :GF T0506 224 :LASA 2b59B 35 :VEIV T0506 229 :D 2b59B 40 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26488 # 1jiwI.221.66 read from T0506.t2k.many.frag # found chain 1jiwI in training set Warning: unaligning (T0506)D223 (1jiwI)A69 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GI 1jiwI 67 :GI T0506 224 :LASASD 1jiwI 70 :LLERGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26490 # 1qmyA.221.129 read from T0506.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)D223 (1qmyA)Y160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1qmyA)I162 because D (zeta) conformation "forbidden" or filtered. T0506 221 :GI 1qmyA 158 :GW T0506 224 :L 1qmyA 161 :A T0506 226 :SASD 1qmyA 163 :DDED Number of specific fragments extracted= 3 number of extra gaps= 2 total=26493 # 1g6sA.221.355 read from T0506.t2k.many.frag # found chain 1g6sA in training set T0506 221 :GIDLASASD 1g6sA 356 :GAEVEEGHD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26494 # 2ayh.221.154 read from T0506.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0506)G221 (2ayh)Y155 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLASASD 2ayh 156 :IKWYVDGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26495 # 1m0wA.221.266 read from T0506.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0506)G221 (1m0wA)T267 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1m0wA)G268 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :DLASASD 1m0wA 269 :KLFIRDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26496 # 2f1lA.221.119 read from T0506.t2k.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)A225 (2f1lA)I112 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2f1lA)R116 because T (delta_L) conformation "forbidden" or filtered. T0506 221 :GIDL 2f1lA 108 :GLKV T0506 226 :SAS 2f1lA 113 :DQG Number of specific fragments extracted= 2 number of extra gaps= 2 total=26498 # 1o4yA.221.197 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)G221 (1o4yA)T214 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1o4yA)G221 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLAS 1o4yA 215 :LEYYI T0506 229 :D 1o4yA 222 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=26500 # 1vraB.221.147 read from T0506.t2k.many.frag # found chain 1vraB in template set T0506 221 :GIDLASASD 1vraB 344 :TIDIAIGPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26501 # 2f9hA.221.57 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)A227 (2f9hA)G61 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :GIDLAS 2f9hA 55 :GDHLKI T0506 228 :SD 2f9hA 62 :DT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26503 # 1k0mA.221.63 read from T0506.t2k.many.frag # found chain 1k0mA in training set Warning: unaligning (T0506)I222 (1k0mA)P65 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1k0mA)F66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1k0mA)G70 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :G 1k0mA 64 :L T0506 224 :LAS 1k0mA 67 :LLY T0506 228 :SD 1k0mA 71 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26506 # 1jakA.221.98 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)G221 (1jakA)G93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1jakA)G99 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLAS 1jakA 94 :YRLDS T0506 228 :SD 1jakA 100 :PA Number of specific fragments extracted= 2 number of extra gaps= 2 total=26508 # 2a6zA.221.169 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)G221 (2a6zA)L175 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (2a6zA)Q179 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2a6zA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2a6zA)N182 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDL 2a6zA 176 :LKV T0506 226 :S 2a6zA 180 :V T0506 229 :D 2a6zA 183 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=26511 # 1xodA.221.80 read from T0506.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)L224 (1xodA)W89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1xodA)G92 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :GID 1xodA 86 :FHH T0506 225 :AS 1xodA 90 :RI T0506 228 :SD 1xodA 93 :DK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26514 # 1wycA.221.346 read from T0506.t2k.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 Warning: unaligning (T0506)A225 (1wycA)W351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1wycA)D353 because D (zeta) conformation "forbidden" or filtered. T0506 221 :GI 1wycA 347 :GQ T0506 226 :S 1wycA 352 :L T0506 228 :SD 1wycA 354 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26517 # 1v5vA.221.328 read from T0506.t2k.many.frag # found chain 1v5vA in training set Warning: unaligning (T0506)A227 (1v5vA)N335 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1v5vA)E337 because P (beta_P) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1v5vA 329 :GYKVYA T0506 228 :S 1v5vA 336 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=26519 # 1ntvA.221.70 read from T0506.t2k.many.frag # found chain 1ntvA in training set T0506 221 :GIDLASASD 1ntvA 93 :GIKIFDEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26520 # 1tueB.221.163 read from T0506.t2k.many.frag # found chain 1tueB in template set Warning: unaligning (T0506)D223 (1tueB)Y163 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1tueB)V165 because P (beta_P) conformation "forbidden" or filtered. T0506 221 :GI 1tueB 161 :GL T0506 224 :L 1tueB 164 :Y T0506 226 :SASD 1tueB 166 :KEGY Number of specific fragments extracted= 3 number of extra gaps= 2 total=26523 # 1s2oA.221.67 read from T0506.t2k.many.frag # found chain 1s2oA in training set Warning: unaligning (T0506)D223 (1s2oA)E70 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GI 1s2oA 68 :GS T0506 224 :LASASD 1s2oA 71 :IYHPEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26525 1utyA expands to /projects/compbio/data/pdb/1uty.pdb.gz 1utyA:Skipped atom 463, because occupancy 0.350 <= existing 0.650 in 1utyA Skipped atom 465, because occupancy 0.350 <= existing 0.650 in 1utyA Skipped atom 467, because occupancy 0.350 <= existing 0.650 in 1utyA Skipped atom 469, because occupancy 0.350 <= existing 0.650 in 1utyA # 1utyA.221.33 read from T0506.t2k.many.frag # adding 1utyA to template set # found chain 1utyA in template set Warning: unaligning (T0506)G221 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1utyA)C35 Warning: unaligning (T0506)I222 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1utyA)C35 T0506 223 :DLASASD 1utyA 36 :QIKIGRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26526 # 1xksA.221.395 read from T0506.t2k.many.frag # found chain 1xksA in template set T0506 221 :GIDLASASD 1xksA 460 :VPIIFSRNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26527 # 2f02A.222.230 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)D223 (2f02A)I230 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :I 2f02A 229 :A T0506 224 :LASASDL 2f02A 231 :AKHHDQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26529 # 1nkiA.222.37 read from T0506.t2k.many.frag # found chain 1nkiA in training set T0506 222 :IDLASASDL 1nkiA 38 :AYLELGSLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26530 # 1szwA.222.244 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)D229 (1szwA)R230 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLASAS 1szwA 223 :DALQLAG T0506 230 :L 1szwA 231 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=26532 # 1yllA.222.150 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1yllA)G155 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLAS 1yllA 149 :VAISL T0506 229 :DL 1yllA 156 :QP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26534 # 2fa8A.222.51 read from T0506.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0506)A227 (2fa8A)D55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2fa8A)G56 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLAS 2fa8A 50 :FEITV T0506 229 :DL 2fa8A 57 :TI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26536 # 1go3E.222.96 read from T0506.t2k.many.frag # found chain 1go3E in training set T0506 222 :IDLASASDL 1go3E 97 :SFVRLGPLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26537 # 1g6sA.222.356 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLASASD 1g6sA 357 :AEVEEGHD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26538 1oo0A expands to /projects/compbio/data/pdb/1oo0.pdb.gz 1oo0A:# 1oo0A.222.88 read from T0506.t2k.many.frag # adding 1oo0A to template set # found chain 1oo0A in template set T0506 222 :IDLASASDL 1oo0A 89 :LEIVIGDEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26539 # 1k3bA.222.67 read from T0506.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)I222 (1k3bA)F68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1k3bA)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. T0506 224 :LAS 1k3bA 70 :IVL T0506 229 :DL 1k3bA 75 :YK Number of specific fragments extracted= 2 number of extra gaps= 2 total=26541 # 1d2sA.222.63 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S228 (1d2sA)N82 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLASA 1d2sA 76 :PEIQLH T0506 229 :DL 1d2sA 83 :HW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26543 # 1rcqA.222.283 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)D223 (1rcqA)L285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1rcqA)D289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1rcqA)K291 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :I 1rcqA 284 :T T0506 224 :LAS 1rcqA 286 :VFI T0506 228 :S 1rcqA 290 :G T0506 230 :L 1rcqA 292 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=26547 # 1txlA.222.113 read from T0506.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)A225 (1txlA)H117 because D (zeta) conformation "forbidden" or filtered. T0506 222 :IDL 1txlA 114 :VEF T0506 226 :SASDL 1txlA 118 :RNNET Number of specific fragments extracted= 2 number of extra gaps= 1 total=26549 # 1utyA.222.34 read from T0506.t2k.many.frag # found chain 1utyA in template set Warning: unaligning (T0506)I222 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1utyA)C35 Warning: unaligning (T0506)A227 (1utyA)G40 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLAS 1utyA 36 :QIKI T0506 228 :SDL 1utyA 41 :RVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26551 # 2a6zA.222.170 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)D223 (2a6zA)K177 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2a6zA)K183 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :I 2a6zA 176 :L T0506 224 :LASAS 2a6zA 178 :VQVDN T0506 230 :L 2a6zA 184 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26554 # 2b59B.222.32 read from T0506.t2k.many.frag # found chain 2b59B in template set T0506 222 :IDLASASDL 2b59B 33 :FKVEIVGTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26555 # 1nh0A.222.10 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 T0506 222 :IDLAS 1nh0A 11 :VTIKI T0506 229 :DL 1nh0A 18 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26557 # 2ayh.222.155 read from T0506.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0506)A227 (2ayh)D161 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2ayh)G162 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2ayh)V163 because P (beta_P) conformation "forbidden" or filtered. T0506 222 :IDLAS 2ayh 156 :IKWYV T0506 230 :L 2ayh 164 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26559 # 1xodA.222.81 read from T0506.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)L224 (1xodA)W89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1xodA)R90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1xodA)K94 because P (beta_P) conformation "forbidden" or filtered. T0506 222 :ID 1xodA 87 :HH T0506 226 :SAS 1xodA 91 :IGD T0506 230 :L 1xodA 95 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=26562 1mbmA expands to /projects/compbio/data/pdb/1mbm.pdb.gz 1mbmA:# 1mbmA.222.40 read from T0506.t2k.many.frag # adding 1mbmA to template set # found chain 1mbmA in template set Warning: unaligning (T0506)A227 (1mbmA)G52 because S (epsilon) conformation "forbidden" or filtered. T0506 222 :IDLAS 1mbmA 47 :ATLKI T0506 228 :SDL 1mbmA 53 :DAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=26564 # 1m0wA.222.267 read from T0506.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0506)L230 (1m0wA)E276 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLASASD 1m0wA 268 :GKLFIRDT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26565 # 1k0mA.222.64 read from T0506.t2k.many.frag # found chain 1k0mA in training set Warning: unaligning (T0506)I222 (1k0mA)P65 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1k0mA)L68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k0mA)T71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1k0mA)E72 because E (beta_S) conformation "forbidden" or filtered. T0506 223 :DL 1k0mA 66 :FL T0506 226 :SA 1k0mA 69 :YG T0506 230 :L 1k0mA 73 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=26568 # 1vraB.222.148 read from T0506.t2k.many.frag # found chain 1vraB in template set Warning: unaligning (T0506)D223 (1vraB)D346 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1vraB)P351 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1vraB)I352 because P (beta_P) conformation "forbidden" or filtered. T0506 222 :I 1vraB 345 :I T0506 224 :LASA 1vraB 347 :IAIG T0506 230 :L 1vraB 353 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26571 # 1qmyA.222.130 read from T0506.t2k.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)A225 (1qmyA)I162 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1qmyA)D164 because S (epsilon) conformation "forbidden" or filtered. T0506 222 :IDL 1qmyA 159 :WYA T0506 226 :S 1qmyA 163 :D T0506 228 :SDL 1qmyA 165 :EDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=26574 # 1hxn.222.128 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. T0506 222 :IDLAS 1hxn 344 :LHIMA T0506 228 :SDL 1hxn 350 :RRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26576 # 1jiwI.222.67 read from T0506.t2k.many.frag # found chain 1jiwI in training set T0506 222 :IDLASASDL 1jiwI 68 :IALLERGGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26577 # 1jtgB.222.146 read from T0506.t2k.many.frag # found chain 1jtgB in training set Warning: unaligning (T0506)D229 (1jtgB)G154 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLASAS 1jtgB 147 :AHLWFTD T0506 230 :L 1jtgB 155 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26579 # 1o4yA.222.198 read from T0506.t2k.many.frag # found chain 1o4yA in training set Warning: unaligning (T0506)A225 (1o4yA)Y218 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1o4yA)D220 because L (left) conformation "forbidden" or filtered. T0506 222 :IDL 1o4yA 215 :LEY T0506 226 :S 1o4yA 219 :I T0506 228 :SDL 1o4yA 221 :GVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26582 # 2f9hA.222.58 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)A225 (2f9hA)K59 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2f9hA)T63 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :IDL 2f9hA 56 :DHL T0506 226 :SAS 2f9hA 60 :IGD T0506 230 :L 2f9hA 64 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=26585 # 1xksA.222.396 read from T0506.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)L230 (1xksA)G469 because S (epsilon) conformation "forbidden" or filtered. T0506 222 :IDLASASD 1xksA 461 :PIIFSRNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26586 # 1rg8A.222.68 read from T0506.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0506)L230 (1rg8A)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLASASD 1rg8A 63 :QYLAMDTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26587 # 2f02A.223.231 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A225 (2f02A)K232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DL 2f02A 230 :IA T0506 226 :S 2f02A 233 :H T0506 228 :SDLA 2f02A 235 :DQFY Number of specific fragments extracted= 3 number of extra gaps= 2 total=26590 # 1oo0A.223.89 read from T0506.t2k.many.frag # found chain 1oo0A in template set Warning: unaligning (T0506)A227 (1oo0A)G94 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DLAS 1oo0A 90 :EIVI T0506 228 :SDLA 1oo0A 95 :DEHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26592 # 1nkiA.223.38 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DLAS 1nkiA 39 :YLEL T0506 228 :SDLA 1nkiA 44 :SLWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26594 # 1g6sA.223.357 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLASASD 1g6sA 358 :EVEEGHD T0506 231 :A 1g6sA 366 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=26596 # 1szwA.223.245 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)D223 (1szwA)A224 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LASASDLA 1szwA 225 :LQLAGRGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26597 # 1rcqA.223.284 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)A227 (1rcqA)D289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1rcqA)G290 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1rcqA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLAS 1rcqA 285 :LVFI T0506 229 :DL 1rcqA 291 :KP Number of specific fragments extracted= 2 number of extra gaps= 2 total=26599 # 1d2sA.223.64 read from T0506.t2k.many.frag # found chain 1d2sA in training set T0506 223 :DLASASDLA 1d2sA 77 :EIQLHNHWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26600 # 2a6zA.223.171 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)A227 (2a6zA)D181 because L (left) conformation "forbidden" or filtered. T0506 223 :DLAS 2a6zA 177 :KVQV T0506 228 :SDLA 2a6zA 182 :NKVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=26602 # 1nh0A.223.11 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 T0506 223 :DLAS 1nh0A 12 :TIKI T0506 229 :DLA 1nh0A 18 :QLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26604 # 1utyA.223.35 read from T0506.t2k.many.frag # found chain 1utyA in template set Warning: unaligning (T0506)A227 (1utyA)G40 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLAS 1utyA 36 :QIKI T0506 228 :SDLA 1utyA 41 :RVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26606 # 1xodA.223.82 read from T0506.t2k.many.frag # found chain 1xodA in training set T0506 223 :DLASASDLA 1xodA 88 :HWRIGDKKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26607 # 2fa8A.223.52 read from T0506.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0506)D223 (2fa8A)E51 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2fa8A)D55 because L (left) conformation "forbidden" or filtered. T0506 224 :LAS 2fa8A 52 :ITV T0506 228 :SDLA 2fa8A 56 :GTII Number of specific fragments extracted= 2 number of extra gaps= 2 total=26609 # 2b59B.223.33 read from T0506.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0506)D229 (2b59B)T40 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLASAS 2b59B 34 :KVEIVG T0506 230 :LA 2b59B 41 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26611 # 1k3bA.223.68 read from T0506.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. T0506 223 :DLAS 1k3bA 69 :EIVL T0506 229 :DLA 1k3bA 75 :YKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26613 # 1yllA.223.151 read from T0506.t2k.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1yllA)G155 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :DLAS 1yllA 150 :AISL T0506 229 :DLA 1yllA 156 :QPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26615 # 1mbmA.223.41 read from T0506.t2k.many.frag # found chain 1mbmA in template set Warning: unaligning (T0506)S228 (1mbmA)D53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1mbmA)A54 because P (beta_P) conformation "forbidden" or filtered. T0506 223 :DLASA 1mbmA 48 :TLKIG T0506 230 :LA 1mbmA 55 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=26617 # 1jakA.223.100 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)A227 (1jakA)G99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1jakA)G102 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DLAS 1jakA 95 :RLDS T0506 228 :SD 1jakA 100 :PA T0506 231 :A 1jakA 103 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=26620 # 1m0wA.223.268 read from T0506.t2k.many.frag # found chain 1m0wA in training set T0506 223 :DLASASDLA 1m0wA 269 :KLFIRDTEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=26621 # 2f9hA.223.59 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)D223 (2f9hA)H57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (2f9hA)K59 because N (gamma') conformation "forbidden" or filtered. T0506 224 :L 2f9hA 58 :L T0506 226 :SASDLA 2f9hA 60 :IGDTNY Number of specific fragments extracted= 2 number of extra gaps= 2 total=26623 1k8kD expands to /projects/compbio/data/pdb/1k8k.pdb.gz 1k8kD:# 1k8kD.223.152 read from T0506.t2k.many.frag # adding 1k8kD to template set # found chain 1k8kD in template set Warning: unaligning (T0506)A227 (1k8kD)K157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1k8kD)R160 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1k8kD)V161 because E (beta_S) conformation "forbidden" or filtered. T0506 223 :DLAS 1k8kD 153 :YVES T0506 228 :SD 1k8kD 158 :KD Number of specific fragments extracted= 2 number of extra gaps= 2 total=26625 # 1ok7A.223.281 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)D229 (1ok7A)N288 because L (left) conformation "forbidden" or filtered. T0506 223 :DLASAS 1ok7A 282 :RLYVSE T0506 230 :LA 1ok7A 289 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26627 # 2ayh.223.156 read from T0506.t2k.many.frag # found chain 2ayh in training set Warning: unaligning (T0506)A225 (2ayh)Y159 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2ayh)D161 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2ayh)G162 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2ayh)V163 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (2ayh)K165 because G (3-10) conformation "forbidden" or filtered. T0506 223 :DL 2ayh 157 :KW T0506 226 :S 2ayh 160 :V T0506 230 :L 2ayh 164 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=26630 # 1go3E.223.97 read from T0506.t2k.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)S226 (1go3E)L101 because G (3-10) conformation "forbidden" or filtered. T0506 223 :DLA 1go3E 98 :FVR T0506 227 :ASDLA 1go3E 102 :GPLDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26632 # 1txlA.223.114 read from T0506.t2k.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)D223 (1txlA)E115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1txlA)H117 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1txlA)E121 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :L 1txlA 116 :F T0506 226 :SAS 1txlA 118 :RNN T0506 230 :LA 1txlA 122 :TT Number of specific fragments extracted= 3 number of extra gaps= 3 total=26635 # 1xksA.223.397 read from T0506.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)D223 (1xksA)I462 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1xksA)F464 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1xksA)G469 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1xksA)L470 because P (beta_P) conformation "forbidden" or filtered. T0506 224 :L 1xksA 463 :I T0506 226 :SASD 1xksA 465 :SRNS Number of specific fragments extracted= 2 number of extra gaps= 3 total=26637 1vqoE expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoE:# 1vqoE.223.39 read from T0506.t2k.many.frag # adding 1vqoE to template set # found chain 1vqoE in template set Warning: unaligning (T0506)D223 (1vqoE)D39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1vqoE)S41 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :L 1vqoE 40 :V T0506 226 :SASDLA 1vqoE 42 :VDGDTV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26639 # 1hxn.223.129 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DLAS 1hxn 345 :HIMA T0506 228 :SDLA 1hxn 350 :RRLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26641 # 1k0mA.223.65 read from T0506.t2k.many.frag # found chain 1k0mA in training set Warning: unaligning (T0506)A225 (1k0mA)L68 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1k0mA)H74 because E (beta_S) conformation "forbidden" or filtered. T0506 223 :DL 1k0mA 66 :FL T0506 226 :SASDL 1k0mA 69 :YGTEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=26643 # 1rg8A.223.69 read from T0506.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0506)D223 (1rg8A)Y64 because P (beta_P) conformation "forbidden" or filtered. T0506 224 :LASASDLA 1rg8A 65 :LAMDTDGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26644 # 1jtgB.223.147 read from T0506.t2k.many.frag # found chain 1jtgB in training set Warning: unaligning (T0506)A227 (1jtgB)T152 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1jtgB)D153 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1jtgB)G154 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :DLAS 1jtgB 148 :HLWF T0506 230 :LA 1jtgB 155 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26646 # 2f02A.224.232 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 224 :LAS 2f02A 231 :AKH T0506 228 :SDLAR 2f02A 235 :DQFYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26648 # 1g6sA.224.358 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASASD 1g6sA 359 :VEEGHD T0506 231 :AR 1g6sA 366 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26650 # 1oo0A.224.90 read from T0506.t2k.many.frag # found chain 1oo0A in template set Warning: unaligning (T0506)A227 (1oo0A)G94 because S (epsilon) conformation "forbidden" or filtered. T0506 224 :LAS 1oo0A 91 :IVI T0506 228 :SDLAR 1oo0A 95 :DEHIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26652 # 1nh0A.224.12 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LAS 1nh0A 13 :IKI T0506 229 :DL 1nh0A 18 :QL T0506 232 :R 1nh0A 21 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=26655 # 2a6zA.224.172 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)A227 (2a6zA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2a6zA)N182 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2a6zA)K183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (2a6zA)F186 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LAS 2a6zA 178 :VQV T0506 230 :LA 2a6zA 184 :VC Number of specific fragments extracted= 2 number of extra gaps= 2 total=26657 # 1rcqA.224.285 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)A227 (1rcqA)D289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1rcqA)G290 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1rcqA)K291 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1rcqA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LAS 1rcqA 286 :VFI T0506 230 :L 1rcqA 292 :P T0506 232 :R 1rcqA 294 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=26660 # 1nkiA.224.39 read from T0506.t2k.many.frag # found chain 1nkiA in training set T0506 224 :LASASDLAR 1nkiA 40 :LELGSLWLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=26661 # 1szwA.224.246 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)A231 (1szwA)S232 because P (beta_P) conformation "forbidden" or filtered. T0506 224 :LASASDL 1szwA 225 :LQLAGRG T0506 232 :R 1szwA 233 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=26663 # 1xodA.224.83 read from T0506.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASASDLA 1xodA 89 :WRIGDKKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26664 # 1jakA.224.101 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)A227 (1jakA)G99 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LAS 1jakA 96 :LDS T0506 228 :SDLAR 1jakA 100 :PAGVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26666 # 1utyA.224.36 read from T0506.t2k.many.frag # found chain 1utyA in template set Warning: unaligning (T0506)A227 (1utyA)G40 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LAS 1utyA 37 :IKI T0506 228 :SDLAR 1utyA 41 :RVVAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26668 # 1mbmA.224.42 read from T0506.t2k.many.frag # found chain 1mbmA in template set Warning: unaligning (T0506)A227 (1mbmA)G52 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1mbmA)A54 because P (beta_P) conformation "forbidden" or filtered. T0506 224 :LAS 1mbmA 49 :LKI T0506 228 :S 1mbmA 53 :D T0506 230 :LAR 1mbmA 55 :MLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=26671 # 1d2sA.224.65 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)A225 (1d2sA)Q79 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1d2sA)N82 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :L 1d2sA 78 :I T0506 226 :SA 1d2sA 80 :LH T0506 229 :DLAR 1d2sA 83 :HWAQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=26674 # 1k8kD.224.153 read from T0506.t2k.many.frag # found chain 1k8kD in template set Warning: unaligning (T0506)L230 (1k8kD)R160 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASASD 1k8kD 154 :VESKKD T0506 231 :AR 1k8kD 161 :VT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26676 # 1vqoE.224.40 read from T0506.t2k.many.frag # found chain 1vqoE in template set Warning: unaligning (T0506)S228 (1vqoE)G44 because S (epsilon) conformation "forbidden" or filtered. T0506 224 :LASA 1vqoE 40 :VSVD T0506 229 :DLAR 1vqoE 45 :DTVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26678 # 1ok7A.224.282 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)S226 (1ok7A)V285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ok7A)N288 because L (left) conformation "forbidden" or filtered. T0506 224 :LA 1ok7A 283 :LY T0506 227 :AS 1ok7A 286 :SE T0506 230 :LAR 1ok7A 289 :QLK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26681 # 1uwfA.224.74 read from T0506.t2k.many.frag # found chain 1uwfA in training set Warning: unaligning (T0506)A227 (1uwfA)S78 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1uwfA)Y82 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LAS 1uwfA 75 :VKY T0506 228 :SDL 1uwfA 79 :GSS T0506 232 :R 1uwfA 83 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=26684 # 1hxn.224.130 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A225 (1hxn)M347 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. T0506 224 :L 1hxn 346 :I T0506 226 :S 1hxn 348 :A T0506 228 :SDLAR 1hxn 350 :RRLWW Number of specific fragments extracted= 3 number of extra gaps= 2 total=26687 # 1k3bA.224.69 read from T0506.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. T0506 224 :LAS 1k3bA 70 :IVL T0506 229 :DLAR 1k3bA 75 :YKWF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26689 # 2f9hA.224.60 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)A227 (2f9hA)G61 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (2f9hA)Y65 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LAS 2f9hA 58 :LKI T0506 228 :SDL 2f9hA 62 :DTN T0506 232 :R 2f9hA 66 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26692 # 2b59B.224.34 read from T0506.t2k.many.frag # found chain 2b59B in template set Warning: unaligning (T0506)A227 (2b59B)V38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2b59B)G39 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2b59B)T40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (2b59B)Y43 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LAS 2b59B 35 :VEI T0506 230 :LA 2b59B 41 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=26694 # 1k0mA.224.66 read from T0506.t2k.many.frag # found chain 1k0mA in training set Warning: unaligning (T0506)S228 (1k0mA)T71 because G (3-10) conformation "forbidden" or filtered. T0506 224 :LASA 1k0mA 67 :LLYG T0506 229 :DLAR 1k0mA 72 :EVHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26696 2bf5A expands to /projects/compbio/data/pdb/2bf5.pdb.gz 2bf5A:# 2bf5A.224.82 read from T0506.t2k.many.frag # adding 2bf5A to template set # found chain 2bf5A in template set Warning: unaligning (T0506)L224 because of BadResidue code BAD_PEPTIDE in next template residue (2bf5A)Q88 Warning: unaligning (T0506)A225 because of BadResidue code BAD_PEPTIDE at template residue (2bf5A)Q88 Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SASD 2bf5A 89 :ADED T0506 231 :AR 2bf5A 94 :IR Number of specific fragments extracted= 2 number of extra gaps= 2 total=26698 # 1sacA.224.72 read from T0506.t2k.many.frag # found chain 1sacA in template set Warning: unaligning (T0506)A227 (1sacA)G76 because L (left) conformation "forbidden" or filtered. T0506 224 :LAS 1sacA 73 :LYI T0506 228 :SDLAR 1sacA 77 :RHKVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26700 # 1igqA.224.37 read from T0506.t2k.many.frag # found chain 1igqA in training set T0506 224 :LASASDLAR 1igqA 334 :LKYEDDGQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26701 1dmlA expands to /projects/compbio/data/pdb/1dml.pdb.gz 1dmlA:# 1dmlA.224.211 read from T0506.t2k.many.frag # adding 1dmlA to template set # found chain 1dmlA in template set T0506 224 :LASASDLAR 1dmlA 212 :VFTTSTCVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26702 # 2fa8A.224.53 read from T0506.t2k.many.frag # found chain 2fa8A in template set Warning: unaligning (T0506)A227 (2fa8A)D55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2fa8A)G56 because T (delta_L) conformation "forbidden" or filtered. T0506 224 :LAS 2fa8A 52 :ITV T0506 229 :DLAR 2fa8A 57 :TIIW Number of specific fragments extracted= 2 number of extra gaps= 1 total=26704 # 1rg8A.224.70 read from T0506.t2k.many.frag # found chain 1rg8A in training set Warning: unaligning (T0506)L230 (1rg8A)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 224 :LASASD 1rg8A 65 :LAMDTD T0506 231 :AR 1rg8A 72 :LL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26706 # 1m0wA.224.269 read from T0506.t2k.many.frag # found chain 1m0wA in training set Warning: unaligning (T0506)S226 (1m0wA)I272 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1m0wA)E276 because T (delta_L) conformation "forbidden" or filtered. T0506 224 :LA 1m0wA 270 :LF T0506 227 :ASD 1m0wA 273 :RDT T0506 231 :AR 1m0wA 277 :QE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26709 # 1xksA.224.398 read from T0506.t2k.many.frag # found chain 1xksA in template set T0506 224 :LASASDLAR 1xksA 463 :IFSRNSGLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26710 # 2f02A.225.233 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2f02A)D235 because G (3-10) conformation "forbidden" or filtered. T0506 225 :AS 2f02A 232 :KH T0506 229 :DLARL 2f02A 236 :QFYRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26712 # 1g6sA.225.359 read from T0506.t2k.many.frag # found chain 1g6sA in training set T0506 225 :ASASDLARL 1g6sA 360 :EEGHDYIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26713 # 1nh0A.225.13 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :AS 1nh0A 14 :KI T0506 229 :DLAR 1nh0A 18 :QLKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=26715 # 1oo0A.225.91 read from T0506.t2k.many.frag # found chain 1oo0A in template set Warning: unaligning (T0506)A227 (1oo0A)G94 because S (epsilon) conformation "forbidden" or filtered. T0506 225 :AS 1oo0A 92 :VI T0506 228 :SDLARL 1oo0A 95 :DEHISF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26717 # 2a6zA.225.173 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)A225 (2a6zA)Q179 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (2a6zA)Q187 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SASDLAR 2a6zA 180 :VDNKVCF Number of specific fragments extracted= 1 number of extra gaps= 2 total=26718 # 1rcqA.225.286 read from T0506.t2k.many.frag # found chain 1rcqA in training set T0506 225 :ASASDLARL 1rcqA 287 :FIDGKPGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26719 # 1xodA.225.84 read from T0506.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :ASASDLA 1xodA 90 :RIGDKKF T0506 233 :L 1xodA 98 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=26721 # 1nkiA.225.40 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1nkiA)L45 because P (beta_P) conformation "forbidden" or filtered. T0506 225 :AS 1nkiA 41 :EL T0506 228 :S 1nkiA 44 :S T0506 230 :LARL 1nkiA 46 :WLCL Number of specific fragments extracted= 3 number of extra gaps= 2 total=26724 # 1jakA.225.102 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)A227 (1jakA)G99 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :AS 1jakA 97 :DS T0506 228 :SDLARL 1jakA 100 :PAGVTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26726 # 1mbmA.225.43 read from T0506.t2k.many.frag # found chain 1mbmA in template set Warning: unaligning (T0506)A227 (1mbmA)G52 because S (epsilon) conformation "forbidden" or filtered. T0506 225 :AS 1mbmA 50 :KI T0506 228 :SDLARL 1mbmA 53 :DAMLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26728 # 1szwA.225.247 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)S228 (1szwA)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1szwA)R230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1szwA)F234 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :ASA 1szwA 226 :QLA T0506 230 :LAR 1szwA 231 :GSW Number of specific fragments extracted= 2 number of extra gaps= 2 total=26730 # 1utyA.225.37 read from T0506.t2k.many.frag # found chain 1utyA in template set T0506 225 :ASASDLARL 1utyA 38 :KIGRVVAFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26731 # 1vqoE.225.41 read from T0506.t2k.many.frag # found chain 1vqoE in template set Warning: unaligning (T0506)A225 (1vqoE)S41 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1vqoE)G44 because S (epsilon) conformation "forbidden" or filtered. T0506 226 :SA 1vqoE 42 :VD T0506 229 :DLARL 1vqoE 45 :DTVVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=26733 # 1k8kD.225.154 read from T0506.t2k.many.frag # found chain 1k8kD in template set Warning: unaligning (T0506)A227 (1k8kD)K157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1k8kD)R160 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :AS 1k8kD 155 :ES T0506 228 :SD 1k8kD 158 :KD T0506 231 :ARL 1k8kD 161 :VTV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26736 # 1hxn.225.131 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A231 (1hxn)W353 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :ASASDL 1hxn 347 :MAGRRL T0506 232 :RL 1hxn 354 :WL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26738 # 1ts9A.225.65 read from T0506.t2k.many.frag # found chain 1ts9A in training set T0506 225 :ASASDLARL 1ts9A 66 :WYKGKIMRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26739 # 1ok7A.225.283 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)S226 (1ok7A)V285 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ok7A)N288 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1ok7A)L290 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :A 1ok7A 284 :Y T0506 227 :AS 1ok7A 286 :SE T0506 230 :L 1ok7A 289 :Q T0506 232 :RL 1ok7A 291 :KI Number of specific fragments extracted= 4 number of extra gaps= 3 total=26743 # 1uwfA.225.75 read from T0506.t2k.many.frag # found chain 1uwfA in training set Warning: unaligning (T0506)A227 (1uwfA)S78 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1uwfA)G79 because T (delta_L) conformation "forbidden" or filtered. T0506 225 :AS 1uwfA 76 :KY T0506 229 :DLARL 1uwfA 80 :SSYPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26745 # 1dmlA.225.212 read from T0506.t2k.many.frag # found chain 1dmlA in template set T0506 225 :ASASDLARL 1dmlA 213 :FTTSTCVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26746 2bwfA expands to /projects/compbio/data/pdb/2bwf.pdb.gz 2bwfA:# 2bwfA.225.9 read from T0506.t2k.many.frag # adding 2bwfA to template set # found chain 2bwfA in template set Warning: unaligning (T0506)A227 (2bwfA)G10 because S (epsilon) conformation "forbidden" or filtered. T0506 225 :AS 2bwfA 8 :KS T0506 228 :SDLARL 2bwfA 11 :QDKWEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26748 # 2bf5A.225.83 read from T0506.t2k.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)A225 because of BadResidue code BAD_PEPTIDE at template residue (2bf5A)Q88 Warning: unaligning (T0506)A227 (2bf5A)D90 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 2bf5A 89 :A T0506 228 :SDLARL 2bf5A 91 :EDQIRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26750 # 2a9sA.225.129 read from T0506.t2k.many.frag # found chain 2a9sA in template set T0506 225 :ASASDLARL 2a9sA 128 :ARNGNVLHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26751 # 1d2sA.225.66 read from T0506.t2k.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)S228 (1d2sA)N82 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :ASA 1d2sA 79 :QLH T0506 229 :DLARL 1d2sA 83 :HWAQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26753 1zdyA expands to /projects/compbio/data/pdb/1zdy.pdb.gz 1zdyA:# 1zdyA.225.165 read from T0506.t2k.many.frag # adding 1zdyA to template set # found chain 1zdyA in template set Warning: unaligning (T0506)D229 (1zdyA)R170 because L (left) conformation "forbidden" or filtered. T0506 225 :ASAS 1zdyA 166 :DYKK T0506 230 :LARL 1zdyA 171 :QVNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=26755 1ze3D expands to /projects/compbio/data/pdb/1ze3.pdb.gz 1ze3D:Skipped atom 2680, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2682, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2684, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2686, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 2688, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 3234, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3236, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3238, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3246, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3248, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3250, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3252, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3254, because occupancy 0.200 <= existing 0.800 in 1ze3D Skipped atom 3285, because occupancy 0.500 <= existing 0.500 in 1ze3D Skipped atom 3287, because occupancy 0.500 <= existing 0.500 in 1ze3D # 1ze3D.225.104 read from T0506.t2k.many.frag # adding 1ze3D to template set # found chain 1ze3D in template set T0506 225 :ASASDLARL 1ze3D 105 :DVGQQRLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=26756 # 1k3bA.225.70 read from T0506.t2k.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1k3bA)A79 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :AS 1k3bA 71 :VL T0506 229 :DLAR 1k3bA 75 :YKWF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26758 # 1sacA.225.73 read from T0506.t2k.many.frag # found chain 1sacA in template set Warning: unaligning (T0506)S226 (1sacA)I75 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1sacA)R77 because T (delta_L) conformation "forbidden" or filtered. T0506 225 :A 1sacA 74 :Y T0506 227 :A 1sacA 76 :G T0506 229 :DLARL 1sacA 78 :HKVTS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26761 # 2f9hA.225.61 read from T0506.t2k.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)A227 (2f9hA)G61 because S (epsilon) conformation "forbidden" or filtered. T0506 225 :AS 2f9hA 59 :KI T0506 228 :SDLARL 2f9hA 62 :DTNYTI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26763 # 1xniA.225.88 read from T0506.t2k.many.frag # found chain 1xniA in template set Warning: unaligning (T0506)A227 (1xniA)E1575 because L (left) conformation "forbidden" or filtered. T0506 225 :AS 1xniA 1573 :EK T0506 228 :SDLARL 1xniA 1576 :GQRKWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26765 # 1xksA.225.399 read from T0506.t2k.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)A231 (1xksA)L470 because P (beta_P) conformation "forbidden" or filtered. T0506 225 :ASASDL 1xksA 464 :FSRNSG T0506 232 :RL 1xksA 471 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26767 # 1g6sA.226.360 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SASD 1g6sA 361 :EGHD T0506 231 :ARLW 1g6sA 366 :IRIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26769 # 2f02A.226.234 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2f02A)Q236 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :S 2f02A 233 :H T0506 228 :S 2f02A 235 :D T0506 230 :LARLW 2f02A 237 :FYRVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26772 # 1oo0A.226.92 read from T0506.t2k.many.frag # found chain 1oo0A in template set T0506 226 :SASDLARLW 1oo0A 93 :IGDEHISFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26773 # 1nh0A.226.14 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 1nh0A 15 :I T0506 229 :DL 1nh0A 18 :QL T0506 232 :R 1nh0A 21 :E T0506 234 :W 1nh0A 23 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=26777 # 1rcqA.226.287 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)A227 (1rcqA)D289 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1rcqA)G290 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1rcqA)K291 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1rcqA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 1rcqA 288 :I T0506 230 :L 1rcqA 292 :P T0506 232 :RLW 1rcqA 294 :RLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=26780 # 2a6zA.226.174 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)A227 (2a6zA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2a6zA)N182 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (2a6zA)K183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (2a6zA)F186 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (2a6zA)Q187 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 2a6zA 180 :V T0506 230 :LA 2a6zA 184 :VC T0506 234 :W 2a6zA 188 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26783 # 1jakA.226.103 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)A227 (1jakA)G99 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1jakA)G102 because S (epsilon) conformation "forbidden" or filtered. T0506 226 :S 1jakA 98 :S T0506 228 :SD 1jakA 100 :PA T0506 231 :ARLW 1jakA 103 :VTIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=26786 # 1ts9A.226.66 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)A227 (1ts9A)K68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1ts9A)G69 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :S 1ts9A 67 :Y T0506 229 :DLARLW 1ts9A 70 :KIMRIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26788 # 2a9sA.226.130 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)D229 (2a9sA)N132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (2a9sA)L134 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2a9sA)E137 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :SAS 2a9sA 129 :RNG T0506 230 :L 2a9sA 133 :V T0506 232 :RL 2a9sA 135 :HH Number of specific fragments extracted= 3 number of extra gaps= 3 total=26791 # 1k8kD.226.155 read from T0506.t2k.many.frag # found chain 1k8kD in template set Warning: unaligning (T0506)L230 (1k8kD)R160 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SASD 1k8kD 156 :SKKD T0506 231 :ARLW 1k8kD 161 :VTVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26793 # 1szwA.226.248 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)S228 (1szwA)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1szwA)R230 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SA 1szwA 227 :LA T0506 230 :LARLW 1szwA 231 :GSWFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26795 # 2bf5A.226.84 read from T0506.t2k.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)A227 (2bf5A)D90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 2bf5A 89 :A T0506 228 :SDLARL 2bf5A 91 :EDQIRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26797 # 1vqoE.226.42 read from T0506.t2k.many.frag # found chain 1vqoE in template set T0506 226 :SASDLARLW 1vqoE 42 :VDGDTVVIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26798 # 1nkiA.226.41 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 226 :S 1nkiA 42 :L T0506 228 :SDLARLW 1nkiA 44 :SLWLCLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26800 # 1ze3D.226.105 read from T0506.t2k.many.frag # found chain 1ze3D in template set T0506 226 :SASDLARLW 1ze3D 106 :VGQQRLNLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26801 # 1xodA.226.85 read from T0506.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)A227 (1xodA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1xodA)F96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 1xodA 91 :I T0506 228 :SDL 1xodA 93 :DKK T0506 233 :LW 1xodA 98 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=26804 # 1dmlA.226.213 read from T0506.t2k.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)S226 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :ASDLARLW 1dmlA 215 :TSTCVTFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=26805 # 1uwfA.226.76 read from T0506.t2k.many.frag # found chain 1uwfA in training set Warning: unaligning (T0506)W234 (1uwfA)P85 because C (cis) conformation "forbidden" or filtered. T0506 226 :SASDLARL 1uwfA 77 :YSGSSYPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26806 # 1kafA.226.81 read from T0506.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0506)A231 (1kafA)V190 because E (beta_S) conformation "forbidden" or filtered. T0506 226 :SASDL 1kafA 185 :AKNGN T0506 232 :RLW 1kafA 191 :YLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26808 # 1ok7A.226.284 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)D229 (1ok7A)N288 because L (left) conformation "forbidden" or filtered. T0506 226 :SAS 1ok7A 285 :VSE T0506 230 :LARLW 1ok7A 289 :QLKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26810 # 1e2wA.226.198 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)S228 (1e2wA)G201 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :SA 1e2wA 199 :AN T0506 229 :DLARLW 1e2wA 202 :EVVVDK Number of specific fragments extracted= 2 number of extra gaps= 1 total=26812 # 1utyA.226.38 read from T0506.t2k.many.frag # found chain 1utyA in template set T0506 226 :SASDLARLW 1utyA 39 :IGRVVAFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26813 # 1zdyA.226.166 read from T0506.t2k.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)D229 (1zdyA)R170 because L (left) conformation "forbidden" or filtered. T0506 226 :SAS 1zdyA 167 :YKK T0506 230 :LARLW 1zdyA 171 :QVNLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=26815 1s12A expands to /projects/compbio/data/pdb/1s12.pdb.gz 1s12A:# 1s12A.226.46 read from T0506.t2k.many.frag # adding 1s12A to template set # found chain 1s12A in template set Warning: unaligning (T0506)A227 (1s12A)E48 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1s12A)L52 because E (beta_S) conformation "forbidden" or filtered. T0506 226 :S 1s12A 47 :K T0506 228 :SDL 1s12A 49 :SGY T0506 232 :RLW 1s12A 53 :KVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26818 # 1hxn.226.132 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. T0506 226 :S 1hxn 348 :A T0506 228 :SDLARLW 1hxn 350 :RRLWWLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26820 # 2bwfA.226.10 read from T0506.t2k.many.frag # found chain 2bwfA in template set Warning: unaligning (T0506)A227 (2bwfA)G10 because S (epsilon) conformation "forbidden" or filtered. T0506 226 :S 2bwfA 9 :S T0506 228 :SDLARLW 2bwfA 11 :QDKWEVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26822 # 1mbmA.226.44 read from T0506.t2k.many.frag # found chain 1mbmA in template set Warning: unaligning (T0506)D229 (1mbmA)A54 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :SAS 1mbmA 51 :IGD T0506 230 :LARLW 1mbmA 55 :MLTLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26824 1y43B expands to /projects/compbio/data/pdb/1y43.pdb.gz 1y43B:# 1y43B.226.82 read from T0506.t2k.many.frag # adding 1y43B to template set # found chain 1y43B in template set Warning: unaligning (T0506)S228 (1y43B)G85 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :SA 1y43B 83 :TT T0506 229 :DLARLW 1y43B 86 :QSVTHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26826 # 1ig0A.226.229 read from T0506.t2k.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D229 (1ig0A)N233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1ig0A)L236 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :SAS 1ig0A 230 :IKK T0506 231 :A 1ig0A 235 :T T0506 233 :LW 1ig0A 237 :IE Number of specific fragments extracted= 3 number of extra gaps= 2 total=26829 # 1xniA.226.89 read from T0506.t2k.many.frag # found chain 1xniA in template set T0506 226 :SASDLARLW 1xniA 1574 :KEGQRKWYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26830 # 1g6sA.227.361 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)A231 (1g6sA)I366 because E (beta_S) conformation "forbidden" or filtered. T0506 227 :ASDL 1g6sA 362 :GHDY T0506 232 :RLWF 1g6sA 367 :RITP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26832 # 2f02A.227.235 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 227 :ASDLARLWF 2f02A 234 :HDQFYRVKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26833 # 1oo0A.227.93 read from T0506.t2k.many.frag # found chain 1oo0A in template set T0506 227 :ASDLARLWF 1oo0A 94 :GDEHISFTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26834 # 1nh0A.227.15 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)D229 (1nh0A)Q18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :L 1nh0A 19 :L T0506 232 :R 1nh0A 21 :E T0506 234 :WF 1nh0A 23 :LL Number of specific fragments extracted= 3 number of extra gaps= 3 total=26837 # 2a9sA.227.131 read from T0506.t2k.many.frag # found chain 2a9sA in template set T0506 227 :ASDLARLWF 2a9sA 130 :NGNVLHHEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=26838 # 1ts9A.227.67 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)D229 (1ts9A)K70 because E (beta_S) conformation "forbidden" or filtered. T0506 227 :AS 1ts9A 68 :KG T0506 230 :LARLWF 1ts9A 71 :IMRIKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26840 # 1k8kD.227.156 read from T0506.t2k.many.frag # found chain 1k8kD in template set Warning: unaligning (T0506)L230 (1k8kD)R160 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :ASD 1k8kD 157 :KKD T0506 231 :ARLWF 1k8kD 161 :VTVVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26842 # 1rcqA.227.288 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)A227 (1rcqA)D289 because L (left) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1rcqA 290 :GKPGRLVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=26843 # 1jakA.227.104 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)L230 (1jakA)G102 because S (epsilon) conformation "forbidden" or filtered. T0506 227 :ASD 1jakA 99 :GPA T0506 231 :ARLWF 1jakA 103 :VTITA Number of specific fragments extracted= 2 number of extra gaps= 1 total=26845 # 1s12A.227.47 read from T0506.t2k.many.frag # found chain 1s12A in template set Warning: unaligning (T0506)A227 (1s12A)E48 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1s12A 49 :SGYLKVKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26846 # 2bf5A.227.85 read from T0506.t2k.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)A227 (2bf5A)D90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SDLARL 2bf5A 91 :EDQIRF T0506 235 :F 2bf5A 98 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=26848 # 1vqoE.227.43 read from T0506.t2k.many.frag # found chain 1vqoE in template set Warning: unaligning (T0506)S228 (1vqoE)G44 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1vqoE)V47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F235 (1vqoE)S51 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :A 1vqoE 43 :D T0506 229 :DL 1vqoE 45 :DT T0506 232 :RLW 1vqoE 48 :VIE Number of specific fragments extracted= 3 number of extra gaps= 3 total=26851 # 1y43B.227.83 read from T0506.t2k.many.frag # found chain 1y43B in template set Warning: unaligning (T0506)A227 (1y43B)T84 because G (3-10) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1y43B 85 :GQSVTHTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=26852 # 2a6zA.227.175 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)A227 (2a6zA)D181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2a6zA)N182 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (2a6zA)F186 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLA 2a6zA 183 :KVC T0506 233 :LWF 2a6zA 187 :QTR Number of specific fragments extracted= 2 number of extra gaps= 2 total=26854 1qysA expands to /projects/compbio/data/pdb/1qys.pdb.gz 1qysA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1qysA.227.10 read from T0506.t2k.many.frag # adding 1qysA to template set # found chain 1qysA in template set Warning: unaligning (T0506)D229 (1qysA)N13 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1qysA)D18 because D (zeta) conformation "forbidden" or filtered. T0506 227 :AS 1qysA 11 :DD T0506 230 :LARL 1qysA 14 :GKNF T0506 235 :F 1qysA 19 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=26857 # 1szwA.227.249 read from T0506.t2k.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)S228 (1szwA)G229 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1szwA)R230 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1szwA)F234 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :A 1szwA 228 :A T0506 230 :LAR 1szwA 231 :GSW T0506 234 :WF 1szwA 235 :VA Number of specific fragments extracted= 3 number of extra gaps= 2 total=26860 # 1e2wA.227.199 read from T0506.t2k.many.frag # found chain 1e2wA in training set T0506 227 :ASDLARLWF 1e2wA 200 :NGEVVVDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26861 # 1ze3D.227.106 read from T0506.t2k.many.frag # found chain 1ze3D in template set T0506 227 :ASDLARLWF 1ze3D 107 :GQQRLNLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26862 # 1dmlA.227.214 read from T0506.t2k.many.frag # found chain 1dmlA in template set T0506 227 :ASDLARLWF 1dmlA 215 :TSTCVTFAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=26863 # 1kafA.227.82 read from T0506.t2k.many.frag # found chain 1kafA in training set Warning: unaligning (T0506)D229 (1kafA)G188 because T (delta_L) conformation "forbidden" or filtered. T0506 227 :AS 1kafA 186 :KN T0506 230 :LARLWF 1kafA 189 :NVYLDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=26865 # 1tg7A.227.500 read from T0506.t2k.many.frag # found chain 1tg7A in template set T0506 227 :ASDLARLWF 1tg7A 541 :VGKALVVAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=26866 # 1whzA.227.32 read from T0506.t2k.many.frag # found chain 1whzA in training set T0506 227 :ASDLARLWF 1whzA 33 :HPDGRIVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26867 # 1ok7A.227.285 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)A227 (1ok7A)S286 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ok7A)N288 because L (left) conformation "forbidden" or filtered. T0506 228 :S 1ok7A 287 :E T0506 230 :LARLWF 1ok7A 289 :QLKITA Number of specific fragments extracted= 2 number of extra gaps= 2 total=26869 # 1zdyA.227.167 read from T0506.t2k.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)D229 (1zdyA)R170 because L (left) conformation "forbidden" or filtered. T0506 227 :AS 1zdyA 168 :KK T0506 230 :LARLWF 1zdyA 171 :QVNLYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=26871 # 1hxn.227.133 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1hxn 350 :RRLWWLDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26872 # 1uwfA.227.77 read from T0506.t2k.many.frag # found chain 1uwfA in training set Warning: unaligning (T0506)A227 (1uwfA)S78 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1uwfA)G79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1uwfA)P85 because C (cis) conformation "forbidden" or filtered. T0506 229 :DLARL 1uwfA 80 :SSYPF T0506 235 :F 1uwfA 86 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=26874 # 1gtkA.227.267 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)D229 (1gtkA)Q270 because E (beta_S) conformation "forbidden" or filtered. T0506 227 :AS 1gtkA 268 :GS T0506 230 :LARLWF 1gtkA 271 :IIRGER Number of specific fragments extracted= 2 number of extra gaps= 1 total=26876 # 1utyA.227.39 read from T0506.t2k.many.frag # found chain 1utyA in template set T0506 227 :ASDLARLWF 1utyA 40 :GRVVAFKPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26877 # 1xodA.227.86 read from T0506.t2k.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)A227 (1xodA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SDLA 1xodA 93 :DKKF T0506 233 :LWF 1xodA 98 :LTF Number of specific fragments extracted= 2 number of extra gaps= 2 total=26879 # 1nkiA.227.42 read from T0506.t2k.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1nkiA 44 :SLWLCLSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26880 # 1g6sA.228.362 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SD 1g6sA 363 :HD T0506 231 :ARLWFA 1g6sA 366 :IRITPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26882 # 2f02A.228.236 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 228 :SDLARLWFA 2f02A 235 :DQFYRVKIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=26883 # 2a9sA.228.132 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)D229 (2a9sA)N132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (2a9sA)R139 because D (zeta) conformation "forbidden" or filtered. T0506 228 :S 2a9sA 131 :G T0506 230 :LARLWF 2a9sA 133 :VLHHEM Number of specific fragments extracted= 2 number of extra gaps= 2 total=26885 # 1oo0A.228.94 read from T0506.t2k.many.frag # found chain 1oo0A in template set T0506 228 :SDLARLWFA 1oo0A 95 :DEHISFTTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26886 # 1ts9A.228.68 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)S228 (1ts9A)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ts9A)K70 because E (beta_S) conformation "forbidden" or filtered. T0506 230 :LARLWFA 1ts9A 71 :IMRIKGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26887 # 1nh0A.228.16 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 229 :DL 1nh0A 18 :QL T0506 232 :RLWF 1nh0A 21 :EALL Number of specific fragments extracted= 2 number of extra gaps= 3 total=26889 # 1qysA.228.11 read from T0506.t2k.many.frag # found chain 1qysA in template set Warning: unaligning (T0506)D229 (1qysA)N13 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1qysA)G14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1qysA)K15 because D (zeta) conformation "forbidden" or filtered. T0506 228 :S 1qysA 12 :D T0506 232 :RLWFA 1qysA 16 :NFDYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26891 # 1vqoE.228.44 read from T0506.t2k.many.frag # found chain 1vqoE in template set T0506 228 :SDLARLWFA 1vqoE 44 :GDTVVIESD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26892 # 1y43B.228.84 read from T0506.t2k.many.frag # found chain 1y43B in template set Warning: unaligning (T0506)S228 (1y43B)G85 because T (delta_L) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1y43B 86 :QSVTHTFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26893 # 1k8kD.228.157 read from T0506.t2k.many.frag # found chain 1k8kD in template set T0506 228 :SDLARLWFA 1k8kD 158 :KDRVTVVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=26894 # 1s12A.228.48 read from T0506.t2k.many.frag # found chain 1s12A in template set T0506 228 :SDLARLWFA 1s12A 49 :SGYLKVKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26895 # 1whzA.228.33 read from T0506.t2k.many.frag # found chain 1whzA in training set Warning: unaligning (T0506)A231 (1whzA)R37 because P (beta_P) conformation "forbidden" or filtered. T0506 228 :SDL 1whzA 34 :PDG T0506 232 :RLWFA 1whzA 38 :IVVVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=26897 # 1tg7A.228.501 read from T0506.t2k.many.frag # found chain 1tg7A in template set T0506 228 :SDLARLWFA 1tg7A 542 :GKALVVAWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=26898 # 1e2wA.228.200 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)S228 (1e2wA)G201 because T (delta_L) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1e2wA 202 :EVVVDKIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26899 # 1dmlA.228.215 read from T0506.t2k.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)A231 (1dmlA)V219 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1dmlA)R224 because S (epsilon) conformation "forbidden" or filtered. T0506 228 :SDL 1dmlA 216 :STC T0506 232 :RLWF 1dmlA 220 :TFAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=26901 # 1gtkA.228.268 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)D229 (1gtkA)Q270 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1gtkA)G274 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :S 1gtkA 269 :S T0506 230 :LAR 1gtkA 271 :IIR T0506 234 :WFA 1gtkA 275 :ERR Number of specific fragments extracted= 3 number of extra gaps= 2 total=26904 # 1rcqA.228.289 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)A231 (1rcqA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SDL 1rcqA 290 :GKP T0506 232 :RLWFA 1rcqA 294 :RLVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26906 1r7lA expands to /projects/compbio/data/pdb/1r7l.pdb.gz 1r7lA:# 1r7lA.228.34 read from T0506.t2k.many.frag # adding 1r7lA to template set # found chain 1r7lA in template set Warning: unaligning (T0506)S228 (1r7lA)D27 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1r7lA)R31 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLA 1r7lA 28 :GRY T0506 233 :LWFA 1r7lA 32 :LGIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=26908 # 2bf5A.228.86 read from T0506.t2k.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SD 2bf5A 91 :ED T0506 231 :ARLWFA 2bf5A 94 :IRFYFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26910 # 2igd.228.13 read from T0506.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0506)L233 (2igd)G19 because S (epsilon) conformation "forbidden" or filtered. T0506 228 :SDLAR 2igd 14 :GKTLK T0506 234 :WFA 2igd 20 :ETT Number of specific fragments extracted= 2 number of extra gaps= 1 total=26912 # 1gwmA.228.94 read from T0506.t2k.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)W234 (1gwmA)I101 because D (zeta) conformation "forbidden" or filtered. T0506 228 :SDLARL 1gwmA 95 :DEYVTY T0506 235 :FA 1gwmA 102 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=26914 # 1zsqA.228.88 read from T0506.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)S228 (1zsqA)I158 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1zsqA)R159 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWFA 1zsqA 160 :NLRFAHK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26915 # 1hxn.228.134 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)S228 (1hxn)R350 because G (3-10) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1hxn 351 :RLWWLDLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26916 # 2a6zA.228.176 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)S228 (2a6zA)N182 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (2a6zA)F186 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2a6zA)T188 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLA 2a6zA 183 :KVC T0506 233 :L 2a6zA 187 :Q T0506 235 :FA 2a6zA 189 :RK Number of specific fragments extracted= 3 number of extra gaps= 3 total=26919 # 1jakA.228.105 read from T0506.t2k.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)A231 (1jakA)V103 because E (beta_S) conformation "forbidden" or filtered. T0506 228 :SDL 1jakA 100 :PAG T0506 232 :RLWFA 1jakA 104 :TITAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=26921 # 1uwfA.228.78 read from T0506.t2k.many.frag # found chain 1uwfA in training set Warning: unaligning (T0506)S228 (1uwfA)G79 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1uwfA)Y82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1uwfA)P85 because C (cis) conformation "forbidden" or filtered. T0506 229 :DL 1uwfA 80 :SS T0506 232 :RL 1uwfA 83 :PF T0506 235 :FA 1uwfA 86 :TT Number of specific fragments extracted= 3 number of extra gaps= 3 total=26924 1wruA expands to /projects/compbio/data/pdb/1wru.pdb.gz 1wruA:# 1wruA.228.188 read from T0506.t2k.many.frag # adding 1wruA to template set # found chain 1wruA in template set T0506 228 :SDLARLWFA 1wruA 189 :ENLLTLDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=26925 # 1ok7A.228.286 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)D229 (1ok7A)N288 because L (left) conformation "forbidden" or filtered. T0506 228 :S 1ok7A 287 :E T0506 230 :LARLWFA 1ok7A 289 :QLKITAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=26927 # 1zdyA.228.168 read from T0506.t2k.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)S228 (1zdyA)K169 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1zdyA)R170 because L (left) conformation "forbidden" or filtered. T0506 230 :LARLWFA 1zdyA 171 :QVNLYFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26928 1gmeA expands to /projects/compbio/data/pdb/1gme.pdb.gz 1gmeA:# 1gmeA.228.126 read from T0506.t2k.many.frag # adding 1gmeA to template set # found chain 1gmeA in template set Warning: unaligning (T0506)S228 (1gmeA)N127 because L (left) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1gmeA 128 :GVLTVTVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=26929 # 1g6sA.229.363 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :D 1g6sA 364 :D T0506 231 :ARLWFAE 1g6sA 366 :IRITPPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=26931 # 2a9sA.229.133 read from T0506.t2k.many.frag # found chain 2a9sA in template set T0506 229 :DLARLWFAE 2a9sA 132 :NVLHHEMRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=26932 # 1oo0A.229.95 read from T0506.t2k.many.frag # found chain 1oo0A in template set T0506 229 :DLARLWFAE 1oo0A 96 :EHISFTTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=26933 # 1ts9A.229.69 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)D229 (1ts9A)K70 because E (beta_S) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1ts9A 71 :IMRIKGDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26934 # 2f02A.229.237 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 229 :DLARLWFAE 2f02A 236 :QFYRVKIPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26935 # 1nh0A.229.17 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)D229 (1nh0A)Q18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1nh0A)L23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 230 :LAR 1nh0A 19 :LKE T0506 235 :F 1nh0A 24 :L T0506 237 :E 1nh0A 26 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=26938 # 1qysA.229.12 read from T0506.t2k.many.frag # found chain 1qysA in template set Warning: unaligning (T0506)D229 (1qysA)N13 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1qysA)K15 because D (zeta) conformation "forbidden" or filtered. T0506 230 :L 1qysA 14 :G T0506 232 :RLWFAE 1qysA 16 :NFDYTY Number of specific fragments extracted= 2 number of extra gaps= 2 total=26940 # 1y43B.229.85 read from T0506.t2k.many.frag # found chain 1y43B in template set Warning: unaligning (T0506)E237 (1y43B)G94 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1y43B 86 :QSVTHTFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26941 # 1vqoE.229.45 read from T0506.t2k.many.frag # found chain 1vqoE in template set Warning: unaligning (T0506)E237 (1vqoE)E53 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1vqoE 45 :DTVVIESD Number of specific fragments extracted= 1 number of extra gaps= 1 total=26942 # 1gtkA.229.269 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)L233 (1gtkA)G274 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLAR 1gtkA 270 :QIIR T0506 234 :WFAE 1gtkA 275 :ERRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=26944 # 1tg7A.229.502 read from T0506.t2k.many.frag # found chain 1tg7A in template set T0506 229 :DLARLWFAE 1tg7A 543 :KALVVAWDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=26945 # 1whzA.229.34 read from T0506.t2k.many.frag # found chain 1whzA in training set T0506 229 :DLARLWFAE 1whzA 35 :DGRIVVVPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=26946 # 1zsqA.229.89 read from T0506.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)A236 (1zsqA)K166 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLARLWF 1zsqA 159 :RNLRFAH T0506 237 :E 1zsqA 167 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=26948 # 1s12A.229.49 read from T0506.t2k.many.frag # found chain 1s12A in template set Warning: unaligning (T0506)A231 (1s12A)L52 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1s12A)E58 because L (left) conformation "forbidden" or filtered. T0506 229 :DL 1s12A 50 :GY T0506 232 :RLWFA 1s12A 53 :KVKFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=26950 # 1r7lA.229.35 read from T0506.t2k.many.frag # found chain 1r7lA in template set Warning: unaligning (T0506)D229 (1r7lA)G28 because T (delta_L) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1r7lA 29 :RYRLGIPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=26951 # 1hxn.229.135 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A231 (1hxn)W353 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1hxn)L355 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DL 1hxn 351 :RL T0506 232 :R 1hxn 354 :W T0506 234 :WFAE 1hxn 356 :DLKS Number of specific fragments extracted= 3 number of extra gaps= 2 total=26954 # 1e2wA.229.201 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)D229 (1e2wA)E202 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1e2wA)A210 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :LARLWFA 1e2wA 203 :VVVDKIP Number of specific fragments extracted= 1 number of extra gaps= 2 total=26955 # 2igd.229.14 read from T0506.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0506)A231 (2igd)L17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (2igd)G19 because S (epsilon) conformation "forbidden" or filtered. T0506 229 :DL 2igd 15 :KT T0506 232 :R 2igd 18 :K T0506 234 :WFAE 2igd 20 :ETTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=26958 # 1gwmA.229.95 read from T0506.t2k.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)R232 (1gwmA)T99 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLA 1gwmA 96 :EYV T0506 233 :LWFAE 1gwmA 100 :YILDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26960 # 1dmlA.229.216 read from T0506.t2k.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)E237 (1dmlA)E225 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1dmlA 217 :TCVTFAAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=26961 # 1wruA.229.189 read from T0506.t2k.many.frag # found chain 1wruA in template set Warning: unaligning (T0506)A236 (1wruA)E197 because E (beta_S) conformation "forbidden" or filtered. T0506 229 :DLARLWF 1wruA 190 :NLLTLDF T0506 237 :E 1wruA 198 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=26963 # 2bf5A.229.87 read from T0506.t2k.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (2bf5A)I94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :D 2bf5A 92 :D T0506 232 :RL 2bf5A 95 :RF T0506 235 :FAE 2bf5A 98 :FDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=26966 # 1k8kD.229.158 read from T0506.t2k.many.frag # found chain 1k8kD in template set T0506 229 :DLARLWFAE 1k8kD 159 :DRVTVVFST Number of specific fragments extracted= 1 number of extra gaps= 0 total=26967 # 1rcqA.229.290 read from T0506.t2k.many.frag # found chain 1rcqA in training set Warning: unaligning (T0506)A231 (1rcqA)G293 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DL 1rcqA 291 :KP T0506 232 :RLWFAE 1rcqA 294 :RLVGRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=26969 # 2a6zA.229.177 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)D229 (2a6zA)K183 because E (beta_S) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 2a6zA 184 :VCFQTRKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=26970 # 1vfjA.229.56 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)A236 (1vfjA)G64 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLARLWF 1vfjA 57 :EKVRLEI T0506 237 :E 1vfjA 65 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=26972 # 1gmeA.229.127 read from T0506.t2k.many.frag # found chain 1gmeA in template set Warning: unaligning (T0506)D229 (1gmeA)G128 because T (delta_L) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1gmeA 129 :VLTVTVPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26973 # 1ok7A.229.287 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)D229 (1ok7A)N288 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1ok7A)N295 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1ok7A)N296 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWF 1ok7A 289 :QLKITA Number of specific fragments extracted= 1 number of extra gaps= 2 total=26974 # 1zdyA.229.169 read from T0506.t2k.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)A236 (1zdyA)S177 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLARLWF 1zdyA 170 :RQVNLYF T0506 237 :E 1zdyA 178 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=26976 # 1vlyA.229.159 read from T0506.t2k.many.frag # found chain 1vlyA in training set T0506 229 :DLARLWFAE 1vlyA 148 :ATTLLWFEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26977 # 2a9sA.230.134 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)A236 (2a9sA)R139 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (2a9sA)G141 because S (epsilon) conformation "forbidden" or filtered. T0506 230 :LARLWF 2a9sA 133 :VLHHEM T0506 237 :E 2a9sA 140 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=26979 # 1g6sA.230.364 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :ARLWFAER 1g6sA 366 :IRITPPEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=26980 # 1oo0A.230.96 read from T0506.t2k.many.frag # found chain 1oo0A in template set Warning: unaligning (T0506)F235 (1oo0A)T102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1oo0A)K104 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :LARLW 1oo0A 97 :HISFT T0506 236 :A 1oo0A 103 :S T0506 238 :R 1oo0A 105 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=26983 # 1ts9A.230.70 read from T0506.t2k.many.frag # found chain 1ts9A in training set T0506 230 :LARLWFAER 1ts9A 71 :IMRIKGDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26984 # 1nh0A.230.18 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 230 :L 1nh0A 19 :L T0506 232 :R 1nh0A 21 :E T0506 234 :WF 1nh0A 23 :LL T0506 237 :ER 1nh0A 26 :TG Number of specific fragments extracted= 4 number of extra gaps= 3 total=26988 # 1tg7A.230.503 read from T0506.t2k.many.frag # found chain 1tg7A in template set Warning: unaligning (T0506)R232 (1tg7A)V546 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :LA 1tg7A 544 :AL T0506 233 :LWFAER 1tg7A 547 :VAWDVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=26990 # 1qysA.230.13 read from T0506.t2k.many.frag # found chain 1qysA in template set Warning: unaligning (T0506)L230 (1qysA)G14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1qysA)K15 because D (zeta) conformation "forbidden" or filtered. T0506 232 :RLWFAER 1qysA 16 :NFDYTYT Number of specific fragments extracted= 1 number of extra gaps= 1 total=26991 # 2f02A.230.238 read from T0506.t2k.many.frag # found chain 2f02A in template set T0506 230 :LARLWFAER 2f02A 237 :FYRVKIPTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=26992 # 1y43B.230.86 read from T0506.t2k.many.frag # found chain 1y43B in template set Warning: unaligning (T0506)E237 (1y43B)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1y43B)N95 because L (left) conformation "forbidden" or filtered. T0506 230 :LARLWFA 1y43B 87 :SVTHTFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=26993 # 1gtkA.230.270 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)E237 (1gtkA)G278 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWFA 1gtkA 271 :IIRGERR T0506 238 :R 1gtkA 279 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=26995 # 1vqoE.230.46 read from T0506.t2k.many.frag # found chain 1vqoE in template set Warning: unaligning (T0506)F235 (1vqoE)S51 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLW 1vqoE 46 :TVVIE T0506 236 :AER 1vqoE 52 :DED Number of specific fragments extracted= 2 number of extra gaps= 1 total=26997 # 1whzA.230.35 read from T0506.t2k.many.frag # found chain 1whzA in training set T0506 230 :LARLWFAER 1whzA 36 :GRIVVVPFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=26998 # 1zsqA.230.90 read from T0506.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)A231 (1zsqA)L161 because E (beta_S) conformation "forbidden" or filtered. T0506 230 :L 1zsqA 160 :N T0506 232 :RLWFAER 1zsqA 162 :RFAHKPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27000 # 1s12A.230.50 read from T0506.t2k.many.frag # found chain 1s12A in template set Warning: unaligning (T0506)A236 (1s12A)E57 because E (beta_S) conformation "forbidden" or filtered. T0506 230 :LARLWF 1s12A 51 :YLKVKF T0506 237 :ER 1s12A 58 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27002 # 1e2wA.230.202 read from T0506.t2k.many.frag # found chain 1e2wA in training set T0506 230 :LARLWFAER 1e2wA 203 :VVVDKIPAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27003 # 2igd.230.15 read from T0506.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0506)L233 (2igd)G19 because S (epsilon) conformation "forbidden" or filtered. T0506 230 :LAR 2igd 16 :TLK T0506 234 :WFAER 2igd 20 :ETTTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27005 # 1hxn.230.136 read from T0506.t2k.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)R238 (1hxn)G360 because S (epsilon) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1hxn 352 :LWWLDLKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=27006 # 1gwmA.230.96 read from T0506.t2k.many.frag # found chain 1gwmA in training set T0506 230 :LARLWFAER 1gwmA 97 :YVTYILDVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27007 # 1k8kD.230.159 read from T0506.t2k.many.frag # found chain 1k8kD in template set T0506 230 :LARLWFAER 1k8kD 160 :RVTVVFSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27008 # 1r7lA.230.36 read from T0506.t2k.many.frag # found chain 1r7lA in template set T0506 230 :LARLWFAER 1r7lA 29 :RYRLGIPLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27009 # 1vfjA.230.57 read from T0506.t2k.many.frag # found chain 1vfjA in training set T0506 230 :LARLWFAER 1vfjA 58 :KVRLEIGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27010 # 1gmeA.230.128 read from T0506.t2k.many.frag # found chain 1gmeA in template set Warning: unaligning (T0506)E237 (1gmeA)K136 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :LARLWFA 1gmeA 129 :VLTVTVP T0506 238 :R 1gmeA 137 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=27012 # 2a6zA.230.178 read from T0506.t2k.many.frag # found chain 2a6zA in template set Warning: unaligning (T0506)W234 (2a6zA)T188 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARL 2a6zA 184 :VCFQ T0506 235 :FAER 2a6zA 189 :RKVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27014 # 1zdyA.230.170 read from T0506.t2k.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)A236 (1zdyA)S177 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWF 1zdyA 171 :QVNLYF T0506 237 :ER 1zdyA 178 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27016 # 1vlyA.230.160 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)R238 (1vlyA)P157 because C (cis) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1vlyA 149 :TTLLWFEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=27017 # 1e42A.230.169 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 230 :LARLWFAER 1e42A 849 :ELQFQIKEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27018 # 1dmlA.230.217 read from T0506.t2k.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)R238 (1dmlA)E226 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1dmlA 218 :CVTFAARE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27019 # 2bf5A.230.88 read from T0506.t2k.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (2bf5A)I94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RL 2bf5A 95 :RF T0506 235 :FAER 2bf5A 98 :FDKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27021 # 1ok7A.230.288 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)E237 (1ok7A)N296 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWFA 1ok7A 289 :QLKITAN T0506 238 :R 1ok7A 297 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27023 1yt5A expands to /projects/compbio/data/pdb/1yt5.pdb.gz 1yt5A:# 1yt5A.230.231 read from T0506.t2k.many.frag # adding 1yt5A to template set # found chain 1yt5A in template set Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :ARLWFAER 1yt5A 233 :VRILRPPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27024 # 2a9sA.231.135 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)A236 (2a9sA)R139 because D (zeta) conformation "forbidden" or filtered. T0506 231 :ARLWF 2a9sA 134 :LHHEM T0506 237 :ERV 2a9sA 140 :YGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27026 # 1g6sA.231.365 read from T0506.t2k.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)A236 (1g6sA)P371 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARLWF 1g6sA 366 :IRITP T0506 237 :ERV 1g6sA 372 :EKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27028 # 1oo0A.231.97 read from T0506.t2k.many.frag # found chain 1oo0A in template set Warning: unaligning (T0506)A236 (1oo0A)S103 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARLWF 1oo0A 98 :ISFTT T0506 237 :ERV 1oo0A 104 :KTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27030 # 1nh0A.231.19 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 232 :R 1nh0A 21 :E T0506 234 :WF 1nh0A 23 :LL T0506 237 :ERV 1nh0A 26 :TGA Number of specific fragments extracted= 3 number of extra gaps= 3 total=27033 # 1gtkA.231.271 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)L233 (1gtkA)G274 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1gtkA)R277 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1gtkA)G278 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :AR 1gtkA 272 :IR T0506 234 :WF 1gtkA 275 :ER T0506 238 :RV 1gtkA 279 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27036 # 1zsqA.231.91 read from T0506.t2k.many.frag # found chain 1zsqA in template set T0506 231 :ARLWFAERV 1zsqA 161 :LRFAHKPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27037 # 1ts9A.231.71 read from T0506.t2k.many.frag # found chain 1ts9A in training set T0506 231 :ARLWFAERV 1ts9A 72 :MRIKGDLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27038 # 1whzA.231.36 read from T0506.t2k.many.frag # found chain 1whzA in training set T0506 231 :ARLWFAERV 1whzA 37 :RIVVVPFHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27039 # 1k8kD.231.160 read from T0506.t2k.many.frag # found chain 1k8kD in template set Warning: unaligning (T0506)A236 (1k8kD)S166 because N (gamma') conformation "forbidden" or filtered. T0506 231 :ARLWF 1k8kD 161 :VTVVF T0506 237 :ERV 1k8kD 167 :TVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27041 # 1qysA.231.14 read from T0506.t2k.many.frag # found chain 1qysA in template set Warning: unaligning (T0506)A236 (1qysA)T20 because E (beta_S) conformation "forbidden" or filtered. T0506 231 :ARLWF 1qysA 15 :KNFDY T0506 237 :ERV 1qysA 21 :YTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27043 # 1tg7A.231.504 read from T0506.t2k.many.frag # found chain 1tg7A in template set T0506 231 :ARLWFAERV 1tg7A 545 :LVVAWDVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=27044 # 1y43B.231.87 read from T0506.t2k.many.frag # found chain 1y43B in template set Warning: unaligning (T0506)E237 (1y43B)G94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1y43B)N95 because L (left) conformation "forbidden" or filtered. T0506 231 :ARLWFA 1y43B 88 :VTHTFS T0506 239 :V 1y43B 96 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27046 # 1gweA.231.298 read from T0506.t2k.many.frag # found chain 1gweA in training set Warning: unaligning (T0506)A231 (1gweA)G299 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RLWFAERV 1gweA 300 :TLTLNRNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27047 # 1vfjA.231.58 read from T0506.t2k.many.frag # found chain 1vfjA in training set T0506 231 :ARLWFAERV 1vfjA 59 :VRLEIGVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27048 # 2igd.231.16 read from T0506.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0506)L233 (2igd)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)F235 (2igd)T21 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :AR 2igd 17 :LK T0506 234 :W 2igd 20 :E T0506 236 :AERV 2igd 22 :TTKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27051 # 1s12A.231.51 read from T0506.t2k.many.frag # found chain 1s12A in template set T0506 231 :ARLWFAERV 1s12A 52 :LKVKFEELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27052 # 1e2wA.231.203 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)E237 (1e2wA)A210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1e2wA)G211 because T (delta_L) conformation "forbidden" or filtered. T0506 231 :ARLWFA 1e2wA 204 :VVDKIP T0506 239 :V 1e2wA 212 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=27054 # 1gwmA.231.97 read from T0506.t2k.many.frag # found chain 1gwmA in training set T0506 231 :ARLWFAERV 1gwmA 98 :VTYILDVDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27055 # 1e42A.231.170 read from T0506.t2k.many.frag # found chain 1e42A in training set Warning: unaligning (T0506)A231 (1e42A)L850 because E (beta_S) conformation "forbidden" or filtered. T0506 232 :RLWFAERV 1e42A 851 :QFQIKECH Number of specific fragments extracted= 1 number of extra gaps= 1 total=27056 1cby expands to /projects/compbio/data/pdb/1cby.pdb.gz 1cby:Warning: there is no chain 1cby will retry with 1cbyA Skipped atom 1559, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1561, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1563, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1565, because occupancy 0.500 <= existing 0.500 in 1cby Skipped atom 1567, because occupancy 0.500 <= existing 0.500 in 1cby # 1cby.231.221 read from T0506.t2k.many.frag # adding 1cby to template set # found chain 1cby in template set Warning: unaligning (T0506)E237 (1cby)S228 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARLWFA 1cby 222 :LVQALH T0506 238 :RV 1cby 229 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27058 # 1vqoE.231.47 read from T0506.t2k.many.frag # found chain 1vqoE in template set T0506 231 :ARLWFAERV 1vqoE 47 :VVIESDEDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27059 # 1ok7A.231.289 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)E237 (1ok7A)N296 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :ARLWFA 1ok7A 290 :LKITAN T0506 238 :RV 1ok7A 297 :PE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27061 # 1r7lA.231.37 read from T0506.t2k.many.frag # found chain 1r7lA in template set T0506 231 :ARLWFAERV 1r7lA 30 :YRLGIPLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27062 # 1gmeA.231.129 read from T0506.t2k.many.frag # found chain 1gmeA in template set Warning: unaligning (T0506)A231 (1gmeA)L130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1gmeA)K136 because P (beta_P) conformation "forbidden" or filtered. T0506 232 :RLWFA 1gmeA 131 :TVTVP T0506 238 :RV 1gmeA 137 :AE Number of specific fragments extracted= 2 number of extra gaps= 2 total=27064 # 1k92A.231.244 read from T0506.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0506)F235 (1k92A)N249 because L (left) conformation "forbidden" or filtered. T0506 231 :ARLW 1k92A 245 :PVAL T0506 236 :AERV 1k92A 250 :GKTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27066 # 2f02A.231.239 read from T0506.t2k.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)E237 (2f02A)T244 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARLWFA 2f02A 238 :YRVKIP T0506 238 :RV 2f02A 245 :IQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27068 # 1zdyA.231.171 read from T0506.t2k.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)A236 (1zdyA)S177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1zdyA)E178 because L (left) conformation "forbidden" or filtered. T0506 231 :ARLWF 1zdyA 172 :VNLYF T0506 238 :RV 1zdyA 179 :LS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27070 # 1h4aX.231.99 read from T0506.t2k.many.frag # found chain 1h4aX in training set T0506 231 :ARLWFAERV 1h4aX 101 :QMIEFTEDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27071 # 1vlyA.231.161 read from T0506.t2k.many.frag # found chain 1vlyA in training set Warning: unaligning (T0506)R238 (1vlyA)P157 because C (cis) conformation "forbidden" or filtered. T0506 231 :ARLWFAE 1vlyA 150 :TLLWFEH T0506 239 :V 1vlyA 158 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=27073 1h7sA expands to /projects/compbio/data/pdb/1h7s.pdb.gz 1h7sA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1h7sA.231.211 read from T0506.t2k.many.frag # adding 1h7sA to template set # found chain 1h7sA in template set Warning: unaligning (T0506)R232 (1h7sA)P213 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :A 1h7sA 212 :Q T0506 233 :L 1h7sA 214 :V T0506 235 :FAERV 1h7sA 216 :CTGGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27076 # 2a9sA.232.136 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)A236 (2a9sA)R139 because D (zeta) conformation "forbidden" or filtered. T0506 232 :RLWF 2a9sA 135 :HHEM T0506 237 :ERVE 2a9sA 140 :YGDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27078 # 1gweA.232.299 read from T0506.t2k.many.frag # found chain 1gweA in training set T0506 232 :RLWFAERVE 1gweA 300 :TLTLNRNPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27079 # 1gtkA.232.272 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)L233 (1gtkA)G274 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1gtkA)R277 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1gtkA)G278 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :R 1gtkA 273 :R T0506 234 :WF 1gtkA 275 :ER T0506 238 :RVE 1gtkA 279 :APQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=27082 # 1whzA.232.37 read from T0506.t2k.many.frag # found chain 1whzA in training set T0506 232 :RLWFAERVE 1whzA 38 :IVVVPFHSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27083 # 1k8kD.232.161 read from T0506.t2k.many.frag # found chain 1k8kD in template set T0506 232 :RLWFAERVE 1k8kD 162 :TVVFSTVFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27084 # 1zsqA.232.92 read from T0506.t2k.many.frag # found chain 1zsqA in template set T0506 232 :RLWFAERVE 1zsqA 162 :RFAHKPEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27085 # 1vfjA.232.59 read from T0506.t2k.many.frag # found chain 1vfjA in training set T0506 232 :RLWFAERVE 1vfjA 60 :RLEIGVSEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27086 # 2igd.232.17 read from T0506.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0506)L233 (2igd)G19 because S (epsilon) conformation "forbidden" or filtered. T0506 232 :R 2igd 18 :K T0506 234 :WFAERVE 2igd 20 :ETTTKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27088 # 1qysA.232.15 read from T0506.t2k.many.frag # found chain 1qysA in template set Warning: unaligning (T0506)W234 (1qysA)D18 because D (zeta) conformation "forbidden" or filtered. T0506 232 :RL 1qysA 16 :NF T0506 235 :FAERVE 1qysA 19 :YTYTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27090 # 1h7sA.232.212 read from T0506.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0506)R238 (1h7sA)G219 because T (delta_L) conformation "forbidden" or filtered. T0506 232 :RLWFAE 1h7sA 213 :PVVCTG T0506 239 :VE 1h7sA 220 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27092 # 1oo0A.232.98 read from T0506.t2k.many.frag # found chain 1oo0A in template set T0506 232 :RLWFAERVE 1oo0A 99 :SFTTSKTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27093 # 1nh0A.232.20 read from T0506.t2k.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 232 :RLWF 1nh0A 21 :EALL T0506 237 :ERVE 1nh0A 26 :TGAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27095 # 1gwmA.232.98 read from T0506.t2k.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)E237 (1gwmA)V104 because D (zeta) conformation "forbidden" or filtered. T0506 232 :RLWFA 1gwmA 99 :TYILD T0506 238 :RVE 1gwmA 105 :DFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27097 # 1e42A.232.171 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 232 :RLWFAERVE 1e42A 851 :QFQIKECHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27098 # 1cby.232.222 read from T0506.t2k.many.frag # found chain 1cby in template set Warning: unaligning (T0506)A236 (1cby)H227 because D (zeta) conformation "forbidden" or filtered. T0506 232 :RLWF 1cby 223 :VQAL T0506 237 :ERVE 1cby 228 :SSNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27100 # 1vqoB.232.161 read from T0506.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0506)V239 (1vqoB)G168 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1vqoB)G169 because S (epsilon) conformation "forbidden" or filtered. T0506 232 :RLWFAER 1vqoB 161 :VMETRVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27101 # 1ok7A.232.290 read from T0506.t2k.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)E237 (1ok7A)N296 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RLWFA 1ok7A 291 :KITAN T0506 238 :RVE 1ok7A 297 :PEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27103 # 1g6sA.232.366 read from T0506.t2k.many.frag # found chain 1g6sA in training set T0506 232 :RLWFAERVE 1g6sA 367 :RITPPEKLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27104 # 1s12A.232.52 read from T0506.t2k.many.frag # found chain 1s12A in template set Warning: unaligning (T0506)A236 (1s12A)E57 because E (beta_S) conformation "forbidden" or filtered. T0506 232 :RLWF 1s12A 53 :KVKF T0506 237 :ERVE 1s12A 58 :ELEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27106 # 1ts9A.232.72 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)E240 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RLWFAERV 1ts9A 73 :RIKGDLIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27107 # 1rkuA.232.123 read from T0506.t2k.many.frag # found chain 1rkuA in training set Warning: unaligning (T0506)R232 (1rkuA)V123 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1rkuA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1rkuA)Q129 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WFAE 1rkuA 125 :YQLR T0506 239 :VE 1rkuA 130 :KD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27109 # 1c7nA.232.328 read from T0506.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)F235 (1c7nA)F332 because G (3-10) conformation "forbidden" or filtered. T0506 232 :RLW 1c7nA 329 :WID T0506 236 :AERVE 1c7nA 333 :RALKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27111 # 1y43B.232.88 read from T0506.t2k.many.frag # found chain 1y43B in template set Warning: unaligning (T0506)E237 (1y43B)G94 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RLWFA 1y43B 89 :THTFS T0506 238 :RVE 1y43B 95 :NVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27113 # 1k92A.232.245 read from T0506.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0506)R232 (1k92A)V246 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1k92A)G250 because T (delta_L) conformation "forbidden" or filtered. T0506 233 :LWF 1k92A 247 :ALN T0506 237 :ERVE 1k92A 251 :KTFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=27115 # 1fm0D.232.17 read from T0506.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)L233 (1fm0D)T19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1fm0D)A22 because P (beta_P) conformation "forbidden" or filtered. T0506 232 :R 1fm0D 18 :A T0506 234 :WF 1fm0D 20 :EV T0506 237 :ERVE 1fm0D 23 :ADFP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27118 # 1tg7A.232.505 read from T0506.t2k.many.frag # found chain 1tg7A in template set T0506 232 :RLWFAERVE 1tg7A 546 :VVAWDVSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27119 # 1r7lA.232.38 read from T0506.t2k.many.frag # found chain 1r7lA in template set T0506 232 :RLWFAERVE 1r7lA 31 :RLGIPLYSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27120 # 1e2wA.232.204 read from T0506.t2k.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)W234 (1e2wA)K207 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1e2wA)A210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1e2wA)G211 because T (delta_L) conformation "forbidden" or filtered. T0506 232 :RL 1e2wA 205 :VD T0506 235 :FA 1e2wA 208 :IP T0506 239 :VE 1e2wA 212 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=27123 # 1jyhA.232.95 read from T0506.t2k.many.frag # found chain 1jyhA in training set Warning: unaligning (T0506)A236 (1jyhA)R100 because E (beta_S) conformation "forbidden" or filtered. T0506 232 :RLWF 1jyhA 96 :VAVA T0506 237 :ERVE 1jyhA 101 :VVGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27125 # 2cveA.232.162 read from T0506.t2k.many.frag # found chain 2cveA in template set Warning: unaligning (T0506)R232 (2cveA)R163 because P (beta_P) conformation "forbidden" or filtered. T0506 233 :LWFAERVE 2cveA 164 :FALLLPKP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27126 # 2a9sA.233.137 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)A236 (2a9sA)R139 because D (zeta) conformation "forbidden" or filtered. T0506 233 :LWF 2a9sA 136 :HEM T0506 237 :ERVET 2a9sA 140 :YGDIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27128 # 1gtkA.233.273 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)L233 (1gtkA)G274 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WFAERVET 1gtkA 275 :ERRGAPQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=27129 # 1gweA.233.300 read from T0506.t2k.many.frag # found chain 1gweA in training set T0506 233 :LWFAERVET 1gweA 301 :LTLNRNPEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27130 # 1h7sA.233.213 read from T0506.t2k.many.frag # found chain 1h7sA in template set T0506 233 :LWFAERVET 1h7sA 214 :VVCTGGSPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27131 # 1whzA.233.38 read from T0506.t2k.many.frag # found chain 1whzA in training set T0506 233 :LWFAERVET 1whzA 39 :VVVPFHSGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27132 # 2igd.233.18 read from T0506.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0506)L233 (2igd)G19 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (2igd)T23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T241 (2igd)D27 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WFA 2igd 20 :ETT T0506 238 :RVE 2igd 24 :KAV Number of specific fragments extracted= 2 number of extra gaps= 3 total=27134 # 1k8kD.233.162 read from T0506.t2k.many.frag # found chain 1k8kD in template set T0506 233 :LWFAERVET 1k8kD 163 :VVFSTVFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27135 # 1vqoB.233.162 read from T0506.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0506)R238 (1vqoB)G167 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1vqoB)G168 because S (epsilon) conformation "forbidden" or filtered. T0506 233 :LWFAE 1vqoB 162 :METRV T0506 240 :ET 1vqoB 169 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27137 # 1fm0D.233.18 read from T0506.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)L233 (1fm0D)T19 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1fm0D)A22 because P (beta_P) conformation "forbidden" or filtered. T0506 234 :WF 1fm0D 20 :EV T0506 237 :ERVET 1fm0D 23 :ADFPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27139 # 1qysA.233.16 read from T0506.t2k.many.frag # found chain 1qysA in template set Warning: unaligning (T0506)A236 (1qysA)T20 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T241 (1qysA)T25 because G (3-10) conformation "forbidden" or filtered. T0506 233 :LWF 1qysA 17 :FDY T0506 237 :ERVE 1qysA 21 :YTVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27141 # 1zsqA.233.93 read from T0506.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)A236 (1zsqA)K166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1zsqA)R170 because L (left) conformation "forbidden" or filtered. T0506 233 :LWF 1zsqA 163 :FAH T0506 237 :ERV 1zsqA 167 :PEG T0506 241 :T 1zsqA 171 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=27144 # 1rkuA.233.124 read from T0506.t2k.many.frag # found chain 1rkuA in training set Warning: unaligning (T0506)L233 (1rkuA)G124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1rkuA)L127 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1rkuA)Q129 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1rkuA)D131 because L (left) conformation "forbidden" or filtered. T0506 234 :WF 1rkuA 125 :YQ T0506 237 :E 1rkuA 128 :R T0506 239 :V 1rkuA 130 :K T0506 241 :T 1rkuA 132 :P Number of specific fragments extracted= 4 number of extra gaps= 4 total=27148 # 1vfjA.233.60 read from T0506.t2k.many.frag # found chain 1vfjA in training set T0506 233 :LWFAERVET 1vfjA 61 :LEIGVSEPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27149 # 1e42A.233.172 read from T0506.t2k.many.frag # found chain 1e42A in training set Warning: unaligning (T0506)V239 (1e42A)H858 because G (3-10) conformation "forbidden" or filtered. T0506 233 :LWFAER 1e42A 852 :FQIKEC T0506 240 :ET 1e42A 859 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=27151 # 1jl0A.233.254 read from T0506.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0506)A236 (1jl0A)N258 because G (3-10) conformation "forbidden" or filtered. T0506 233 :LWF 1jl0A 255 :FET T0506 237 :ERVET 1jl0A 259 :LSQTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27153 # 1jyhA.233.96 read from T0506.t2k.many.frag # found chain 1jyhA in training set Warning: unaligning (T0506)V239 (1jyhA)G103 because S (epsilon) conformation "forbidden" or filtered. T0506 233 :LWFAER 1jyhA 97 :AVARVV T0506 240 :ET 1jyhA 104 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27155 2f1fA expands to /projects/compbio/data/pdb/2f1f.pdb.gz 2f1fA:# 2f1fA.233.122 read from T0506.t2k.many.frag # adding 2f1fA to template set # found chain 2f1fA in template set Warning: unaligning (T0506)E237 (2f1fA)G126 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :LWFA 2f1fA 122 :VQLA T0506 238 :RVET 2f1fA 127 :TSGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27157 # 3bamA.233.107 read from T0506.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0506)A236 (3bamA)E111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (3bamA)T114 because G (3-10) conformation "forbidden" or filtered. T0506 233 :LWF 3bamA 108 :VGM T0506 237 :ER 3bamA 112 :FE T0506 240 :ET 3bamA 115 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=27160 # 2cveA.233.163 read from T0506.t2k.many.frag # found chain 2cveA in template set Warning: unaligning (T0506)A236 (2cveA)L167 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (2cveA)L168 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :LWF 2cveA 164 :FAL T0506 238 :RVET 2cveA 169 :PKPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27162 # 1cby.233.223 read from T0506.t2k.many.frag # found chain 1cby in template set T0506 233 :LWFAERVET 1cby 224 :QALHSSNAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27163 # 1k92A.233.246 read from T0506.t2k.many.frag # found chain 1k92A in training set Warning: unaligning (T0506)F235 (1k92A)N249 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1k92A)G250 because T (delta_L) conformation "forbidden" or filtered. T0506 233 :LW 1k92A 247 :AL T0506 237 :ERVET 1k92A 251 :KTFSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27165 1knyA expands to /projects/compbio/data/pdb/1kny.pdb.gz 1knyA:# 1knyA.233.63 read from T0506.t2k.many.frag # adding 1knyA to template set # found chain 1knyA in template set Warning: unaligning (T0506)L233 (1knyA)F64 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1knyA)W68 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WFA 1knyA 65 :SHE T0506 238 :RVET 1knyA 69 :TTGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=27167 1ydxA expands to /projects/compbio/data/pdb/1ydx.pdb.gz 1ydxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ydxA.233.159 read from T0506.t2k.many.frag # adding 1ydxA to template set # found chain 1ydxA in template set T0506 233 :LWFAERVET 1ydxA 137 :IPFTSNKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27168 # 1c7nA.233.329 read from T0506.t2k.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)V239 (1c7nA)K336 because L (left) conformation "forbidden" or filtered. T0506 233 :LWFAER 1c7nA 330 :IDFRAL T0506 240 :ET 1c7nA 337 :MD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27170 # 1ts9A.233.73 read from T0506.t2k.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)E240 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :LWFAERV 1ts9A 74 :IKGDLIN T0506 241 :T 1ts9A 82 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=27172 # 1gwmA.233.99 read from T0506.t2k.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)R238 (1gwmA)D105 because G (3-10) conformation "forbidden" or filtered. T0506 233 :LWFAE 1gwmA 100 :YILDV T0506 239 :VET 1gwmA 106 :FDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27174 # 1jx4A.233.108 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 233 :LWFAERVET 1jx4A 109 :LDISDKVRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27175 # 1sh8A.233.98 read from T0506.t2k.many.frag # found chain 1sh8A in training set T0506 233 :LWFAERVET 1sh8A 97 :VEARLDAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=27176 2b9dA expands to /projects/compbio/data/pdb/2b9d.pdb.gz 2b9dA:# 2b9dA.233.19 read from T0506.t2k.many.frag # adding 2b9dA to template set # found chain 2b9dA in template set Warning: unaligning (T0506)A236 (2b9dA)L64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (2b9dA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :LWF 2b9dA 61 :LTV T0506 238 :RVET 2b9dA 66 :DHSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27178 # 1vmbA.233.80 read from T0506.t2k.many.frag # found chain 1vmbA in training set T0506 233 :LWFAERVET 1vmbA 69 :IYFRCDGQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27179 # 2a9sA.234.138 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)R238 (2a9sA)G141 because S (epsilon) conformation "forbidden" or filtered. T0506 234 :WFAE 2a9sA 137 :EMRY T0506 239 :VETL 2a9sA 142 :DIGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27181 # 1gweA.234.301 read from T0506.t2k.many.frag # found chain 1gweA in training set Warning: unaligning (T0506)A236 (1gweA)N304 because G (3-10) conformation "forbidden" or filtered. T0506 234 :WF 1gweA 302 :TL T0506 237 :ERVETL 1gweA 305 :RNPENH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27183 # 1gtkA.234.274 read from T0506.t2k.many.frag # found chain 1gtkA in training set T0506 234 :WFAERVETL 1gtkA 275 :ERRGAPQDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27184 # 1h7sA.234.214 read from T0506.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0506)W234 (1h7sA)V215 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :FAERVETL 1h7sA 216 :CTGGSPSI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27185 # 2igd.234.19 read from T0506.t2k.many.frag # found chain 2igd in training set T0506 234 :WFAERVETL 2igd 20 :ETTTKAVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27186 # 1fm0D.234.19 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 234 :WFAERVETL 1fm0D 20 :EVAADFPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27187 # 1jx4A.234.109 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 234 :WFAERVETL 1jx4A 110 :DISDKVRDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27188 # 1vqoB.234.163 read from T0506.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0506)E240 (1vqoB)G169 because S (epsilon) conformation "forbidden" or filtered. T0506 234 :WFAERV 1vqoB 163 :ETRVGG T0506 241 :TL 1vqoB 170 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27190 # 1e42A.234.173 read from T0506.t2k.many.frag # found chain 1e42A in training set Warning: unaligning (T0506)E237 (1e42A)E856 because L (left) conformation "forbidden" or filtered. T0506 234 :WFA 1e42A 853 :QIK T0506 238 :RVETL 1e42A 857 :CHLNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27192 # 1k8kD.234.163 read from T0506.t2k.many.frag # found chain 1k8kD in template set Warning: unaligning (T0506)A236 (1k8kD)S166 because N (gamma') conformation "forbidden" or filtered. T0506 234 :WF 1k8kD 164 :VF T0506 237 :ERVETL 1k8kD 167 :TVFKDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27194 # 1lkkA.234.72 read from T0506.t2k.many.frag # found chain 1lkkA in training set T0506 234 :WFAERVETL 1lkkA 194 :SPRITFPGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27195 1zy9A expands to /projects/compbio/data/pdb/1zy9.pdb.gz 1zy9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 859, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 865, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 867, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 1zy9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3225, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3229, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3231, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3233, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 3235, because occupancy 0.500 <= existing 0.500 in 1zy9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 4018, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4022, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4024, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4026, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4028, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4116, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4120, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4122, because occupancy 0.500 <= existing 0.500 in 1zy9A Skipped atom 4124, because occupancy 0.500 <= existing 0.500 in 1zy9A # 1zy9A.234.243 read from T0506.t2k.many.frag # adding 1zy9A to template set # found chain 1zy9A in template set Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE in next template residue (1zy9A)D236 Warning: unaligning (T0506)R238 because of BadResidue code BAD_PEPTIDE at template residue (1zy9A)D236 Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)F237 Warning: unaligning (T0506)E240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zy9A)S239 Warning: unaligning (T0506)T241 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)S239 T0506 234 :WFA 1zy9A 232 :VTR T0506 242 :L 1zy9A 240 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27197 # 1s99A.234.120 read from T0506.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0506)E237 (1s99A)M124 because P (beta_P) conformation "forbidden" or filtered. T0506 234 :WFA 1s99A 121 :LYP T0506 238 :RVETL 1s99A 125 :NEPDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27199 # 2f1fA.234.123 read from T0506.t2k.many.frag # found chain 2f1fA in template set T0506 234 :WFAERVETL 2f1fA 123 :QLAGTSGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27200 # 1vmbA.234.81 read from T0506.t2k.many.frag # found chain 1vmbA in training set Warning: unaligning (T0506)E237 (1vmbA)C73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1vmbA)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 234 :WFA 1vmbA 70 :YFR T0506 238 :R 1vmbA 74 :D T0506 240 :ETL 1vmbA 76 :QNL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27203 # 3bamA.234.108 read from T0506.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0506)A236 (3bamA)E111 because E (beta_S) conformation "forbidden" or filtered. T0506 234 :WF 3bamA 109 :GM T0506 237 :ERVETL 3bamA 112 :FETGNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27205 # 1jl0A.234.255 read from T0506.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0506)F235 (1jl0A)T257 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1jl0A)N258 because G (3-10) conformation "forbidden" or filtered. T0506 234 :W 1jl0A 256 :E T0506 237 :ERVETL 1jl0A 259 :LSQTSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27207 # 1wehA.234.78 read from T0506.t2k.many.frag # found chain 1wehA in training set Warning: unaligning (T0506)R238 (1wehA)P83 because P (beta_P) conformation "forbidden" or filtered. T0506 234 :WFAE 1wehA 79 :DLEL T0506 239 :VETL 1wehA 84 :AATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27209 # 1vfjA.234.61 read from T0506.t2k.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)A236 (1vfjA)G64 because P (beta_P) conformation "forbidden" or filtered. T0506 234 :WF 1vfjA 62 :EI T0506 237 :ERVETL 1vfjA 65 :VSEPFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27211 # 1qysA.234.17 read from T0506.t2k.many.frag # found chain 1qysA in template set Warning: unaligning (T0506)L242 (1qysA)E26 because T (delta_L) conformation "forbidden" or filtered. T0506 234 :WFAERVET 1qysA 18 :DYTYTVTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27212 # 1jyhA.234.97 read from T0506.t2k.many.frag # found chain 1jyhA in training set Warning: unaligning (T0506)V239 (1jyhA)G103 because S (epsilon) conformation "forbidden" or filtered. T0506 234 :WFAER 1jyhA 98 :VARVV T0506 240 :ETL 1jyhA 104 :DDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27214 # 1j27A.234.55 read from T0506.t2k.many.frag # found chain 1j27A in training set Warning: unaligning (T0506)W234 (1j27A)G56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F235 (1j27A)F57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1j27A)G61 because Y (epsilon') conformation "forbidden" or filtered. T0506 236 :AER 1j27A 58 :TLL T0506 240 :ETL 1j27A 62 :NDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=27216 # 1whzA.234.39 read from T0506.t2k.many.frag # found chain 1whzA in training set Warning: unaligning (T0506)L242 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1whzA)P49 T0506 234 :WFAERVET 1whzA 40 :VVPFHSGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27217 # 2a6hE.234.73 read from T0506.t2k.many.frag # found chain 2a6hE in template set Warning: unaligning (T0506)T241 because of BadResidue code BAD_PEPTIDE in next template residue (2a6hE)E82 Warning: unaligning (T0506)L242 because of BadResidue code BAD_PEPTIDE at template residue (2a6hE)E82 T0506 234 :WFAERVE 2a6hE 74 :VFGENLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27218 # 2cveA.234.164 read from T0506.t2k.many.frag # found chain 2cveA in template set Warning: unaligning (T0506)A236 (2cveA)L167 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (2cveA)L168 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WF 2cveA 165 :AL T0506 238 :RVETL 2cveA 169 :PKPER Number of specific fragments extracted= 2 number of extra gaps= 1 total=27220 # 2b9dA.234.20 read from T0506.t2k.many.frag # found chain 2b9dA in template set Warning: unaligning (T0506)A236 (2b9dA)L64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (2b9dA)A65 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WF 2b9dA 62 :TV T0506 238 :RVETL 2b9dA 66 :DHSAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27222 2av4A expands to /projects/compbio/data/pdb/2av4.pdb.gz 2av4A:# 2av4A.234.120 read from T0506.t2k.many.frag # adding 2av4A to template set # found chain 2av4A in template set T0506 234 :WFAERVETL 2av4A 119 :KINWPMNNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27223 # 1n13A.234.21 read from T0506.t2k.many.frag # found chain 1n13A in training set Warning: unaligning (T0506)W234 (1n13A)A22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1n13A)S24 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :F 1n13A 23 :G T0506 237 :ERVETL 1n13A 25 :SEGETP Number of specific fragments extracted= 2 number of extra gaps= 2 total=27225 # 1zsqA.234.94 read from T0506.t2k.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)E240 (1zsqA)R170 because L (left) conformation "forbidden" or filtered. T0506 234 :WFAERV 1zsqA 164 :AHKPEG T0506 241 :TL 1zsqA 171 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27227 # 1r0mA.234.140 read from T0506.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0506)T241 (1r0mA)D148 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WFAERVE 1r0mA 141 :VSLGIQA T0506 242 :L 1r0mA 149 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=27229 # 2a9sA.235.139 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)A236 (2a9sA)R139 because D (zeta) conformation "forbidden" or filtered. T0506 235 :F 2a9sA 138 :M T0506 237 :ERVETLK 2a9sA 140 :YGDIGRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27231 # 2igd.235.20 read from T0506.t2k.many.frag # found chain 2igd in training set T0506 235 :FAERVETLK 2igd 21 :TTTKAVDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27232 # 1lkkA.235.73 read from T0506.t2k.many.frag # found chain 1lkkA in training set T0506 235 :FAERVETLK 1lkkA 195 :PRITFPGLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27233 # 1jx4A.235.110 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 235 :FAERVETLK 1jx4A 111 :ISDKVRDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27234 # 1gweA.235.302 read from T0506.t2k.many.frag # found chain 1gweA in training set Warning: unaligning (T0506)T241 (1gweA)N309 because D (zeta) conformation "forbidden" or filtered. T0506 235 :FAERVE 1gweA 303 :LNRNPE T0506 242 :LK 1gweA 310 :HF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27236 # 1h7sA.235.215 read from T0506.t2k.many.frag # found chain 1h7sA in template set Warning: unaligning (T0506)R238 (1h7sA)G219 because T (delta_L) conformation "forbidden" or filtered. T0506 235 :FAE 1h7sA 216 :CTG T0506 239 :VETLK 1h7sA 220 :SPSIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27238 # 1zy9A.235.244 read from T0506.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE in next template residue (1zy9A)D236 Warning: unaligning (T0506)R238 because of BadResidue code BAD_PEPTIDE at template residue (1zy9A)D236 Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)F237 Warning: unaligning (T0506)E240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zy9A)S239 Warning: unaligning (T0506)T241 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)S239 T0506 235 :FA 1zy9A 233 :TR T0506 242 :LK 1zy9A 240 :VE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27240 # 1gtkA.235.275 read from T0506.t2k.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)R238 (1gtkA)A279 because P (beta_P) conformation "forbidden" or filtered. T0506 235 :FAE 1gtkA 276 :RRG T0506 239 :VETLK 1gtkA 280 :PQDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27242 # 2av4A.235.121 read from T0506.t2k.many.frag # found chain 2av4A in template set Warning: unaligning (T0506)A236 (2av4A)N121 because G (3-10) conformation "forbidden" or filtered. T0506 235 :F 2av4A 120 :I T0506 237 :ERVETLK 2av4A 122 :WPMNNKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27244 # 1fm0D.235.20 read from T0506.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)A236 (1fm0D)A22 because P (beta_P) conformation "forbidden" or filtered. T0506 235 :F 1fm0D 21 :V T0506 237 :ERVETLK 1fm0D 23 :ADFPTVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27246 # 1vqoB.235.164 read from T0506.t2k.many.frag # found chain 1vqoB in template set Warning: unaligning (T0506)R238 (1vqoB)G167 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1vqoB)G168 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1vqoB)G169 because S (epsilon) conformation "forbidden" or filtered. T0506 235 :FAE 1vqoB 164 :TRV T0506 241 :TLK 1vqoB 170 :SVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27248 # 4ubpB.235.102 read from T0506.t2k.many.frag # found chain 4ubpB in training set Warning: unaligning (T0506)A236 (4ubpB)N104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (4ubpB)G105 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :F 4ubpB 103 :T T0506 238 :RVETLK 4ubpB 106 :SVDNKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27250 # 1s99A.235.121 read from T0506.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0506)R238 (1s99A)N125 because L (left) conformation "forbidden" or filtered. T0506 235 :FAE 1s99A 122 :YPM T0506 239 :VETLK 1s99A 126 :EPDYM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27252 # 1j27A.235.56 read from T0506.t2k.many.frag # found chain 1j27A in training set Warning: unaligning (T0506)E237 (1j27A)L59 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :FA 1j27A 57 :FT T0506 238 :RVETLK 1j27A 60 :LGNDPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27254 # 3bamA.235.109 read from T0506.t2k.many.frag # found chain 3bamA in training set Warning: unaligning (T0506)E240 (3bamA)G115 because P (beta_P) conformation "forbidden" or filtered. T0506 235 :FAERV 3bamA 110 :MEFET T0506 241 :TLK 3bamA 116 :NIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27256 # 1e42A.235.174 read from T0506.t2k.many.frag # found chain 1e42A in training set Warning: unaligning (T0506)E240 (1e42A)L859 because P (beta_P) conformation "forbidden" or filtered. T0506 235 :FAERV 1e42A 854 :IKECH T0506 241 :TLK 1e42A 860 :NAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27258 # 1vmbA.235.82 read from T0506.t2k.many.frag # found chain 1vmbA in training set Warning: unaligning (T0506)E237 (1vmbA)C73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1vmbA)D74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1vmbA)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 235 :FA 1vmbA 71 :FR T0506 240 :ETLK 1vmbA 76 :QNLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27260 1ik9A expands to /projects/compbio/data/pdb/1ik9.pdb.gz 1ik9A:# 1ik9A.235.111 read from T0506.t2k.many.frag # adding 1ik9A to template set # found chain 1ik9A in template set T0506 235 :FAERVETLK 1ik9A 112 :NLEKVENPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27261 # 1n13A.235.22 read from T0506.t2k.many.frag # found chain 1n13A in training set Warning: unaligning (T0506)E237 (1n13A)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1n13A)G27 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :FA 1n13A 23 :GS T0506 238 :R 1n13A 26 :E T0506 240 :ETLK 1n13A 28 :ETPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27264 # 1r0mA.235.141 read from T0506.t2k.many.frag # found chain 1r0mA in training set Warning: unaligning (T0506)A236 (1r0mA)L143 because E (beta_S) conformation "forbidden" or filtered. T0506 235 :F 1r0mA 142 :S T0506 237 :ERVETLK 1r0mA 144 :GIQADEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27266 # 1wehA.235.79 read from T0506.t2k.many.frag # found chain 1wehA in training set T0506 235 :FAERVETLK 1wehA 80 :LELPAATLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27267 # 2f1fA.235.124 read from T0506.t2k.many.frag # found chain 2f1fA in template set Warning: unaligning (T0506)E237 (2f1fA)G126 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :FA 2f1fA 124 :LA T0506 238 :RVETLK 2f1fA 127 :TSGKLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27269 # 1nar.235.194 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 235 :FAERVETLK 1nar 195 :QQKPVSTDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27270 # 1w8sA.235.202 read from T0506.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)E237 (1w8sA)P205 because P (beta_P) conformation "forbidden" or filtered. T0506 235 :FA 1w8sA 203 :GG T0506 238 :RVETLK 1w8sA 206 :KTKTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27272 # 1jl0A.235.256 read from T0506.t2k.many.frag # found chain 1jl0A in training set Warning: unaligning (T0506)A236 (1jl0A)N258 because G (3-10) conformation "forbidden" or filtered. T0506 235 :F 1jl0A 257 :T T0506 237 :ERVETLK 1jl0A 259 :LSQTSYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27274 1vq3A expands to /projects/compbio/data/pdb/1vq3.pdb.gz 1vq3A:# 1vq3A.235.58 read from T0506.t2k.many.frag # adding 1vq3A to template set # found chain 1vq3A in template set T0506 235 :FAERVETLK 1vq3A 47 :LEVEAENKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27275 1p7tA expands to /projects/compbio/data/pdb/1p7t.pdb.gz 1p7tA:Bad short name: OD for alphabet: pdb_atoms # 1p7tA.235.70 read from T0506.t2k.many.frag # adding 1p7tA to template set # found chain 1p7tA in template set Warning: unaligning (T0506)E237 (1p7tA)G73 because S (epsilon) conformation "forbidden" or filtered. T0506 235 :FA 1p7tA 71 :NP T0506 238 :RVETLK 1p7tA 74 :PVKDKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27277 # 2aeuA.235.300 read from T0506.t2k.many.frag # found chain 2aeuA in template set Warning: unaligning (T0506)E237 (2aeuA)R303 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :FA 2aeuA 301 :IK T0506 238 :RVETLK 2aeuA 304 :VYKDDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27279 1i7nA expands to /projects/compbio/data/pdb/1i7n.pdb.gz 1i7nA:# 1i7nA.235.280 read from T0506.t2k.many.frag # adding 1i7nA to template set # found chain 1i7nA in template set Warning: unaligning (T0506)R238 (1i7nA)I396 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1i7nA)G397 because S (epsilon) conformation "forbidden" or filtered. T0506 235 :FAE 1i7nA 393 :MPL T0506 240 :ETLK 1i7nA 398 :EHQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27281 # 1k8kD.235.164 read from T0506.t2k.many.frag # found chain 1k8kD in template set T0506 235 :FAERVETLK 1k8kD 165 :FSTVFKDDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27282 # 2igd.236.21 read from T0506.t2k.many.frag # found chain 2igd in training set T0506 236 :AERVETLKQ 2igd 22 :TTKAVDAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=27283 # 1lkkA.236.74 read from T0506.t2k.many.frag # found chain 1lkkA in training set T0506 236 :AERVETLKQ 1lkkA 196 :RITFPGLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27284 # 4ubpB.236.103 read from T0506.t2k.many.frag # found chain 4ubpB in training set T0506 236 :AERVETLKQ 4ubpB 104 :NGSVDNKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27285 # 2a9sA.236.140 read from T0506.t2k.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)T241 (2a9sA)G144 because S (epsilon) conformation "forbidden" or filtered. T0506 236 :AERVE 2a9sA 139 :RYGDI T0506 242 :LKQ 2a9sA 145 :RTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27287 # 1jx4A.236.111 read from T0506.t2k.many.frag # found chain 1jx4A in training set T0506 236 :AERVETLKQ 1jx4A 112 :SDKVRDYRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27288 # 1zy9A.236.245 read from T0506.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE in next template residue (1zy9A)D236 Warning: unaligning (T0506)R238 because of BadResidue code BAD_PEPTIDE at template residue (1zy9A)D236 Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)F237 Warning: unaligning (T0506)E240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zy9A)S239 Warning: unaligning (T0506)T241 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)S239 T0506 236 :A 1zy9A 234 :R T0506 242 :LKQ 1zy9A 240 :VEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27290 # 1ik9A.236.112 read from T0506.t2k.many.frag # found chain 1ik9A in template set T0506 236 :AERVETLKQ 1ik9A 113 :LEKVENPAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27291 # 2av4A.236.122 read from T0506.t2k.many.frag # found chain 2av4A in template set T0506 236 :AERVETLKQ 2av4A 121 :NWPMNNKQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27292 # 1j27A.236.57 read from T0506.t2k.many.frag # found chain 1j27A in training set Warning: unaligning (T0506)E237 (1j27A)L59 because Y (epsilon') conformation "forbidden" or filtered. T0506 236 :A 1j27A 58 :T T0506 238 :RVETLKQ 1j27A 60 :LGNDPAW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27294 # 1p7tA.236.71 read from T0506.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0506)E237 (1p7tA)G73 because S (epsilon) conformation "forbidden" or filtered. T0506 236 :A 1p7tA 72 :P T0506 238 :RVETLKQ 1p7tA 74 :PVKDKAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27296 # 1fm0D.236.21 read from T0506.t2k.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)A236 (1fm0D)A22 because P (beta_P) conformation "forbidden" or filtered. T0506 237 :ERVETLKQ 1fm0D 23 :ADFPTVEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27297 # 1nar.236.195 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 236 :AERVETLKQ 1nar 196 :QKPVSTDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27298 # 1s99A.236.122 read from T0506.t2k.many.frag # found chain 1s99A in training set Warning: unaligning (T0506)E237 (1s99A)M124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1s99A)N125 because L (left) conformation "forbidden" or filtered. T0506 236 :A 1s99A 123 :P T0506 239 :VETLKQ 1s99A 126 :EPDYMG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27300 # 1h7sA.236.216 read from T0506.t2k.many.frag # found chain 1h7sA in template set T0506 236 :AERVETLKQ 1h7sA 217 :TGGSPSIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27301 # 1r6wA.236.109 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 236 :AERVETLKQ 1r6wA 108 :PLCNGDPDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27302 # 1pu6A.236.160 read from T0506.t2k.many.frag # found chain 1pu6A in training set Warning: unaligning (T0506)A236 (1pu6A)G161 because T (delta_L) conformation "forbidden" or filtered. T0506 237 :ERVETLKQ 1pu6A 162 :IEIEDYDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27303 1uw4B expands to /projects/compbio/data/pdb/1uw4.pdb.gz 1uw4B:# 1uw4B.236.219 read from T0506.t2k.many.frag # adding 1uw4B to template set # found chain 1uw4B in template set T0506 236 :AERVETLKQ 1uw4B 987 :IKLCNSLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27304 # 1w8sA.236.203 read from T0506.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)E237 (1w8sA)P205 because P (beta_P) conformation "forbidden" or filtered. T0506 236 :A 1w8sA 204 :G T0506 238 :RVETLKQ 1w8sA 206 :KTKTEED Number of specific fragments extracted= 2 number of extra gaps= 1 total=27306 1di1A expands to /projects/compbio/data/pdb/1di1.pdb.gz 1di1A:# 1di1A.236.147 read from T0506.t2k.many.frag # adding 1di1A to template set # found chain 1di1A in template set T0506 236 :AERVETLKQ 1di1A 187 :RLSIHELGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27307 # 1o8bA.236.172 read from T0506.t2k.many.frag # found chain 1o8bA in training set Warning: unaligning (T0506)A236 (1o8bA)G173 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1o8bA)M174 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1o8bA)E175 because D (zeta) conformation "forbidden" or filtered. T0506 239 :VETLKQ 1o8bA 176 :ILDPIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27308 1y60A expands to /projects/compbio/data/pdb/1y60.pdb.gz 1y60A:Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1y60A Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1y60A # 1y60A.236.119 read from T0506.t2k.many.frag # adding 1y60A to template set # found chain 1y60A in template set Warning: unaligning (T0506)A236 (1y60A)H121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1y60A)E123 because G (3-10) conformation "forbidden" or filtered. T0506 237 :E 1y60A 122 :W T0506 239 :VETLKQ 1y60A 124 :AADDAK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27310 # 1gweA.236.303 read from T0506.t2k.many.frag # found chain 1gweA in training set T0506 236 :AERVETLKQ 1gweA 304 :NRNPENHFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27311 # 1r0mA.236.142 read from T0506.t2k.many.frag # found chain 1r0mA in training set T0506 236 :AERVETLKQ 1r0mA 143 :LGIQADEQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27312 # 1e42A.236.175 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 236 :AERVETLKQ 1e42A 855 :KECHLNADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27313 # 1ta8A.236.257 read from T0506.t2k.many.frag # found chain 1ta8A in training set T0506 236 :AERVETLKQ 1ta8A 258 :RQLCQSIDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27314 # 1i7nA.236.281 read from T0506.t2k.many.frag # found chain 1i7nA in template set T0506 236 :AERVETLKQ 1i7nA 394 :PLIGEHQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27315 # 7odcA.236.198 read from T0506.t2k.many.frag # found chain 7odcA in training set T0506 236 :AERVETLKQ 7odcA 199 :GSGCTDPDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27316 # 1go3F.236.89 read from T0506.t2k.many.frag # found chain 1go3F in training set T0506 236 :AERVETLKQ 1go3F 90 :RELPENAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27317 1jr2A expands to /projects/compbio/data/pdb/1jr2.pdb.gz 1jr2A:Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 51, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1456, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1458, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1460, because occupancy 0.500 <= existing 0.500 in 1jr2A Skipped atom 1462, because occupancy 0.500 <= existing 0.500 in 1jr2A # 1jr2A.236.136 read from T0506.t2k.many.frag # adding 1jr2A to template set # found chain 1jr2A in template set Warning: unaligning (T0506)A236 (1jr2A)G116 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jr2A)C119 Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 Warning: unaligning (T0506)T241 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :E 1jr2A 117 :E T0506 240 :E 1jr2A 120 :G T0506 242 :LKQ 1jr2A 122 :AEK Number of specific fragments extracted= 3 number of extra gaps= 3 total=27320 # 1n13A.236.23 read from T0506.t2k.many.frag # found chain 1n13A in training set Warning: unaligning (T0506)A236 (1n13A)S24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1n13A)S25 because Y (epsilon') conformation "forbidden" or filtered. T0506 238 :RVETLKQ 1n13A 26 :EGETPLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=27321 # 1uw4B.237.220 read from T0506.t2k.many.frag # found chain 1uw4B in template set T0506 237 :ERVETLKQF 1uw4B 988 :KLCNSLEES Number of specific fragments extracted= 1 number of extra gaps= 0 total=27322 # 1nar.237.196 read from T0506.t2k.many.frag # found chain 1nar in training set Warning: unaligning (T0506)E237 (1nar)K197 because E (beta_S) conformation "forbidden" or filtered. T0506 238 :RVETLKQF 1nar 198 :PVSTDDAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27323 # 2av4A.237.123 read from T0506.t2k.many.frag # found chain 2av4A in template set T0506 237 :ERVETLKQF 2av4A 122 :WPMNNKQEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27324 # 1p7tA.237.72 read from T0506.t2k.many.frag # found chain 1p7tA in template set Warning: unaligning (T0506)E237 (1p7tA)G73 because S (epsilon) conformation "forbidden" or filtered. T0506 238 :RVETLKQF 1p7tA 74 :PVKDKAAY Number of specific fragments extracted= 1 number of extra gaps= 1 total=27325 # 1ik9A.237.113 read from T0506.t2k.many.frag # found chain 1ik9A in template set Warning: unaligning (T0506)E237 (1ik9A)E114 because E (beta_S) conformation "forbidden" or filtered. T0506 238 :RVETLKQF 1ik9A 115 :KVENPAEV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27326 # 4ubpB.237.104 read from T0506.t2k.many.frag # found chain 4ubpB in training set T0506 237 :ERVETLKQF 4ubpB 105 :GSVDNKELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27327 # 1lkkA.237.75 read from T0506.t2k.many.frag # found chain 1lkkA in training set T0506 237 :ERVETLKQF 1lkkA 197 :ITFPGLHEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27328 # 2igd.237.22 read from T0506.t2k.many.frag # found chain 2igd in training set Warning: unaligning (T0506)T241 (2igd)D27 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :ERVE 2igd 23 :TKAV T0506 242 :LKQF 2igd 28 :AETA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27330 # 1r6wA.237.110 read from T0506.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0506)E237 (1r6wA)L109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1r6wA)G112 because S (epsilon) conformation "forbidden" or filtered. T0506 238 :RV 1r6wA 110 :CN T0506 241 :TLKQF 1r6wA 113 :DPDDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27332 # 1w8sA.237.204 read from T0506.t2k.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)R238 (1w8sA)K206 because P (beta_P) conformation "forbidden" or filtered. T0506 237 :E 1w8sA 205 :P T0506 239 :VETLKQF 1w8sA 207 :TKTEEDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27334 # 1go3F.237.90 read from T0506.t2k.many.frag # found chain 1go3F in training set Warning: unaligning (T0506)E237 (1go3F)E91 because P (beta_P) conformation "forbidden" or filtered. T0506 238 :RVETLKQF 1go3F 92 :LPENAEEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27335 # 1zy9A.237.246 read from T0506.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE in next template residue (1zy9A)D236 Warning: unaligning (T0506)R238 because of BadResidue code BAD_PEPTIDE at template residue (1zy9A)D236 Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)F237 Warning: unaligning (T0506)E240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zy9A)S239 Warning: unaligning (T0506)T241 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)S239 T0506 242 :LKQF 1zy9A 240 :VEEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=27336 1r8gA expands to /projects/compbio/data/pdb/1r8g.pdb.gz 1r8gA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1r8gA.237.195 read from T0506.t2k.many.frag # adding 1r8gA to template set # found chain 1r8gA in template set Warning: unaligning (T0506)T241 (1r8gA)N200 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :ERVE 1r8gA 196 :PWVS T0506 242 :LKQF 1r8gA 201 :WQQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27338 # 1di1A.237.148 read from T0506.t2k.many.frag # found chain 1di1A in template set Warning: unaligning (T0506)R238 (1di1A)S189 because P (beta_P) conformation "forbidden" or filtered. T0506 237 :E 1di1A 188 :L T0506 239 :VETLKQF 1di1A 190 :IHELGHY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27340 1ry9A expands to /projects/compbio/data/pdb/1ry9.pdb.gz 1ry9A:# 1ry9A.237.118 read from T0506.t2k.many.frag # adding 1ry9A to template set # found chain 1ry9A in template set T0506 237 :ERVETLKQF 1ry9A 107 :DYVHDGIVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27341 # 1pu6A.237.161 read from T0506.t2k.many.frag # found chain 1pu6A in training set T0506 237 :ERVETLKQF 1pu6A 162 :IEIEDYDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27342 # 1jr2A.237.137 read from T0506.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0506)R238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jr2A)C119 Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 Warning: unaligning (T0506)T241 (1jr2A)N121 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :E 1jr2A 117 :E T0506 240 :E 1jr2A 120 :G T0506 242 :LKQF 1jr2A 122 :AEKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27345 1okcA expands to /projects/compbio/data/pdb/1okc.pdb.gz 1okcA:# 1okcA.237.247 read from T0506.t2k.many.frag # adding 1okcA to template set # found chain 1okcA in template set Warning: unaligning (T0506)T241 (1okcA)G252 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :ERVE 1okcA 248 :IMYT T0506 242 :LKQF 1okcA 253 :TVDC Number of specific fragments extracted= 2 number of extra gaps= 1 total=27347 # 1y60A.237.120 read from T0506.t2k.many.frag # found chain 1y60A in template set T0506 237 :ERVETLKQF 1y60A 122 :WEAADDAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27348 # 1ta8A.237.258 read from T0506.t2k.many.frag # found chain 1ta8A in training set T0506 237 :ERVETLKQF 1ta8A 259 :QLCQSIDEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27349 # 1i7nA.237.282 read from T0506.t2k.many.frag # found chain 1i7nA in template set Warning: unaligning (T0506)R238 (1i7nA)I396 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :E 1i7nA 395 :L T0506 239 :VETLKQF 1i7nA 397 :GEHQVED Number of specific fragments extracted= 2 number of extra gaps= 1 total=27351 # 1o8bA.237.173 read from T0506.t2k.many.frag # found chain 1o8bA in training set Warning: unaligning (T0506)R238 (1o8bA)E175 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T241 (1o8bA)D178 because D (zeta) conformation "forbidden" or filtered. T0506 237 :E 1o8bA 174 :M T0506 239 :VE 1o8bA 176 :IL T0506 242 :LKQF 1o8bA 179 :PIAM Number of specific fragments extracted= 3 number of extra gaps= 2 total=27354 # 1r0mA.237.143 read from T0506.t2k.many.frag # found chain 1r0mA in training set T0506 237 :ERVETLKQF 1r0mA 144 :GIQADEQAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27355 # 1j27A.237.58 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 237 :ERVETLKQF 1j27A 59 :LLGNDPAWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27356 # 1hf2A.237.15 read from T0506.t2k.many.frag # found chain 1hf2A in template set T0506 237 :ERVETLKQF 1hf2A 16 :KDYQNLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27357 1zvdA expands to /projects/compbio/data/pdb/1zvd.pdb.gz 1zvdA:Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 104, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 106, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 108, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 110, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 112, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 114, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 116, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 1zvdA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1552, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1556, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1558, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1560, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1562, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1564, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1566, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1696, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1700, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 1702, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2319, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2323, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2325, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2327, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2329, because occupancy 0.500 <= existing 0.500 in 1zvdA Skipped atom 2331, because occupancy 0.500 <= existing 0.500 in 1zvdA # 1zvdA.237.354 read from T0506.t2k.many.frag # adding 1zvdA to template set # found chain 1zvdA in template set Warning: unaligning (T0506)E237 (1zvdA)P723 because P (beta_P) conformation "forbidden" or filtered. T0506 238 :RVETLKQF 1zvdA 724 :PYESYEKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27358 # 1fm0D.237.22 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 237 :ERVETLKQF 1fm0D 23 :ADFPTVEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27359 # 2a9sA.237.141 read from T0506.t2k.many.frag # found chain 2a9sA in template set T0506 237 :ERVETLKQF 2a9sA 140 :YGDIGRTEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27360 # 1oi7A.237.270 read from T0506.t2k.many.frag # found chain 1oi7A in training set T0506 237 :ERVETLKQF 1oi7A 271 :PVADTIDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27361 # 1nnfA.237.169 read from T0506.t2k.many.frag # found chain 1nnfA in training set T0506 237 :ERVETLKQF 1nnfA 170 :KLYAKNSVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27362 # 1p7tA.238.73 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 238 :RVETLKQFE 1p7tA 74 :PVKDKAAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27363 # 1i7nA.238.283 read from T0506.t2k.many.frag # found chain 1i7nA in template set T0506 238 :RVETLKQFE 1i7nA 396 :IGEHQVEDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27364 # 1r6wA.238.111 read from T0506.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0506)E240 (1r6wA)G112 because S (epsilon) conformation "forbidden" or filtered. T0506 238 :RV 1r6wA 110 :CN T0506 241 :TLKQFE 1r6wA 113 :DPDDLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27366 # 2av4A.238.124 read from T0506.t2k.many.frag # found chain 2av4A in template set T0506 238 :RVETLKQFE 2av4A 123 :PMNNKQEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27367 # 1ik9A.238.114 read from T0506.t2k.many.frag # found chain 1ik9A in template set T0506 238 :RVETLKQFE 1ik9A 115 :KVENPAEVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27368 # 1uw4B.238.221 read from T0506.t2k.many.frag # found chain 1uw4B in template set T0506 238 :RVETLKQFE 1uw4B 989 :LCNSLEESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27369 # 1nar.238.197 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 238 :RVETLKQFE 1nar 198 :PVSTDDAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27370 1va6A expands to /projects/compbio/data/pdb/1va6.pdb.gz 1va6A:# 1va6A.238.251 read from T0506.t2k.many.frag # adding 1va6A to template set # found chain 1va6A in template set T0506 238 :RVETLKQFE 1va6A 252 :TFNDLYEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27371 # 2igd.238.23 read from T0506.t2k.many.frag # found chain 2igd in training set T0506 238 :RVETLKQFE 2igd 24 :KAVDAETAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27372 # 4ubpB.238.105 read from T0506.t2k.many.frag # found chain 4ubpB in training set T0506 238 :RVETLKQFE 4ubpB 106 :SVDNKELIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27373 # 1di1A.238.149 read from T0506.t2k.many.frag # found chain 1di1A in template set Warning: unaligning (T0506)R238 (1di1A)S189 because P (beta_P) conformation "forbidden" or filtered. T0506 239 :VETLKQFE 1di1A 190 :IHELGHYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27374 # 1okcA.238.248 read from T0506.t2k.many.frag # found chain 1okcA in template set T0506 238 :RVETLKQFE 1okcA 249 :MYTGTVDCW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27375 # 1zy9A.238.247 read from T0506.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0506)R238 because of BadResidue code BAD_PEPTIDE at template residue (1zy9A)D236 Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)F237 Warning: unaligning (T0506)E240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zy9A)S239 Warning: unaligning (T0506)T241 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)S239 T0506 242 :LKQFE 1zy9A 240 :VEEMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27376 # 1w8sA.238.205 read from T0506.t2k.many.frag # found chain 1w8sA in template set T0506 238 :RVETLKQFE 1w8sA 206 :KTKTEEDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27377 # 1ry9A.238.119 read from T0506.t2k.many.frag # found chain 1ry9A in template set T0506 238 :RVETLKQFE 1ry9A 108 :YVHDGIVFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27378 # 1kjqA.238.368 read from T0506.t2k.many.frag # found chain 1kjqA in training set T0506 238 :RVETLKQFE 1kjqA 370 :TAESVVDAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27379 # 1u02A.238.207 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 238 :RVETLKQFE 1u02A 208 :HVADYIEMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27380 # 1r8gA.238.196 read from T0506.t2k.many.frag # found chain 1r8gA in template set T0506 238 :RVETLKQFE 1r8gA 197 :WVSNWQQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27381 # 1jr2A.238.138 read from T0506.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0506)R238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jr2A)C119 Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 T0506 240 :ETLKQFE 1jr2A 120 :GNAEKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=27382 # 1lkkA.238.76 read from T0506.t2k.many.frag # found chain 1lkkA in training set T0506 238 :RVETLKQFE 1lkkA 198 :TFPGLHELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27383 # 1j27A.238.59 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 238 :RVETLKQFE 1j27A 60 :LGNDPAWVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27384 # 1e42A.238.177 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 238 :RVETLKQFE 1e42A 857 :CHLNADTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27385 # 1ta8A.238.259 read from T0506.t2k.many.frag # found chain 1ta8A in training set Warning: unaligning (T0506)T241 (1ta8A)S263 because Y (epsilon') conformation "forbidden" or filtered. T0506 238 :RVE 1ta8A 260 :LCQ T0506 242 :LKQFE 1ta8A 264 :IDEVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=27387 # 1y60A.238.121 read from T0506.t2k.many.frag # found chain 1y60A in template set T0506 238 :RVETLKQFE 1y60A 123 :EAADDAKIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27388 # 1xubA.238.145 read from T0506.t2k.many.frag # found chain 1xubA in training set Warning: unaligning (T0506)E240 (1xubA)G128 because L (left) conformation "forbidden" or filtered. T0506 238 :RV 1xubA 126 :AL T0506 241 :TLKQFE 1xubA 129 :RDAELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27390 # 1o8bA.238.174 read from T0506.t2k.many.frag # found chain 1o8bA in training set T0506 238 :RVETLKQFE 1o8bA 175 :EILDPIAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=27391 # 2bg5A.238.304 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 238 :RVETLKQFE 2bg5A 554 :NMSEAREIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27392 # 7odcA.238.200 read from T0506.t2k.many.frag # found chain 7odcA in training set T0506 238 :RVETLKQFE 7odcA 201 :GCTDPDTFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27393 # 1uocA.238.178 read from T0506.t2k.many.frag # found chain 1uocA in template set T0506 238 :RVETLKQFE 1uocA 179 :MPNNKEDFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27394 # 1fm0D.238.23 read from T0506.t2k.many.frag # found chain 1fm0D in training set T0506 238 :RVETLKQFE 1fm0D 24 :DFPTVEALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27395 # 1p7tA.239.74 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 239 :VETLKQFEK 1p7tA 75 :VKDKAAYKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27396 # 1r6wA.239.112 read from T0506.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0506)E240 (1r6wA)G112 because S (epsilon) conformation "forbidden" or filtered. T0506 239 :V 1r6wA 111 :N T0506 241 :TLKQFEK 1r6wA 113 :DPDDLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27398 # 1uw4B.239.222 read from T0506.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0506)T241 (1uw4B)S992 because Y (epsilon') conformation "forbidden" or filtered. T0506 239 :VE 1uw4B 990 :CN T0506 242 :LKQFEK 1uw4B 993 :LEESIR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27400 # 1u02A.239.208 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 239 :VETLKQFEK 1u02A 209 :VADYIEMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27401 # 1di1A.239.150 read from T0506.t2k.many.frag # found chain 1di1A in template set T0506 239 :VETLKQFEK 1di1A 190 :IHELGHYLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27402 # 1kjqA.239.369 read from T0506.t2k.many.frag # found chain 1kjqA in training set T0506 239 :VETLKQFEK 1kjqA 371 :AESVVDAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27403 # 2bg5A.239.305 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 239 :VETLKQFEK 2bg5A 555 :MSEAREIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27404 # 1zy9A.239.248 read from T0506.t2k.many.frag # found chain 1zy9A in template set Warning: unaligning (T0506)V239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)F237 Warning: unaligning (T0506)E240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zy9A)S239 Warning: unaligning (T0506)T241 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zy9A)S239 T0506 242 :LKQFEK 1zy9A 240 :VEEMAK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27405 # 1vk9A.239.133 read from T0506.t2k.many.frag # found chain 1vk9A in template set T0506 239 :VETLKQFEK 1vk9A 122 :MDDPEEIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27406 # 1ta8A.239.260 read from T0506.t2k.many.frag # found chain 1ta8A in training set Warning: unaligning (T0506)T241 (1ta8A)S263 because Y (epsilon') conformation "forbidden" or filtered. T0506 239 :VE 1ta8A 261 :CQ T0506 242 :LKQFEK 1ta8A 264 :IDEVWA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27408 # 1va6A.239.252 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 239 :VETLKQFEK 1va6A 253 :FNDLYEYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27409 # 1r8gA.239.197 read from T0506.t2k.many.frag # found chain 1r8gA in template set T0506 239 :VETLKQFEK 1r8gA 198 :VSNWQQFEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27410 # 1v2xA.239.78 read from T0506.t2k.many.frag # found chain 1v2xA in training set T0506 239 :VETLKQFEK 1v2xA 79 :HPDLHEAFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27411 # 1ik9A.239.115 read from T0506.t2k.many.frag # found chain 1ik9A in template set T0506 239 :VETLKQFEK 1ik9A 116 :VENPAEVIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27412 # 1okcA.239.249 read from T0506.t2k.many.frag # found chain 1okcA in template set T0506 239 :VETLKQFEK 1okcA 250 :YTGTVDCWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27413 # 1lkkA.239.77 read from T0506.t2k.many.frag # found chain 1lkkA in training set T0506 239 :VETLKQFEK 1lkkA 199 :FPGLHELVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27414 # 1i7nA.239.284 read from T0506.t2k.many.frag # found chain 1i7nA in template set T0506 239 :VETLKQFEK 1i7nA 397 :GEHQVEDRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27415 # 1jr2A.239.139 read from T0506.t2k.many.frag # found chain 1jr2A in template set Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jr2A)C119 T0506 240 :ETLKQFEK 1jr2A 120 :GNAEKLAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27416 # 1e42A.239.178 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 239 :VETLKQFEK 1e42A 858 :HLNADTVSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27417 1kjnA expands to /projects/compbio/data/pdb/1kjn.pdb.gz 1kjnA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1kjnA.239.138 read from T0506.t2k.many.frag # adding 1kjnA to template set # found chain 1kjnA in template set T0506 239 :VETLKQFEK 1kjnA 139 :HHNPAPLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27418 # 1uocA.239.179 read from T0506.t2k.many.frag # found chain 1uocA in template set T0506 239 :VETLKQFEK 1uocA 180 :PNNKEDFEW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27419 1m4zA expands to /projects/compbio/data/pdb/1m4z.pdb.gz 1m4zA:# 1m4zA.239.200 read from T0506.t2k.many.frag # adding 1m4zA to template set # found chain 1m4zA in template set Warning: unaligning (T0506)E240 (1m4zA)V199 because P (beta_P) conformation "forbidden" or filtered. T0506 239 :V 1m4zA 198 :K T0506 241 :TLKQFEK 1m4zA 200 :EPREAQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27421 # 1nar.239.198 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 239 :VETLKQFEK 1nar 199 :VSTDDAFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27422 # 1w8sA.239.206 read from T0506.t2k.many.frag # found chain 1w8sA in template set T0506 239 :VETLKQFEK 1w8sA 207 :TKTEEDFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27423 # 1j27A.239.60 read from T0506.t2k.many.frag # found chain 1j27A in training set Warning: unaligning (T0506)V239 (1j27A)G61 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :ETLKQFEK 1j27A 62 :NDPAWVEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27424 # 1o8bA.239.175 read from T0506.t2k.many.frag # found chain 1o8bA in training set T0506 239 :VETLKQFEK 1o8bA 176 :ILDPIAMEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27425 # 1oi7A.239.272 read from T0506.t2k.many.frag # found chain 1oi7A in training set T0506 239 :VETLKQFEK 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27426 # 1xubA.239.146 read from T0506.t2k.many.frag # found chain 1xubA in training set Warning: unaligning (T0506)E240 (1xubA)G128 because L (left) conformation "forbidden" or filtered. T0506 239 :V 1xubA 127 :L T0506 241 :TLKQFEK 1xubA 129 :RDAELLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27428 # 1hf2A.239.17 read from T0506.t2k.many.frag # found chain 1hf2A in template set T0506 239 :VETLKQFEK 1hf2A 18 :YQNLEEVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27429 # 2az4A.239.233 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 239 :VETLKQFEK 2az4A 234 :VVSEEDLVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27430 # 1u02A.240.209 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 240 :ETLKQFEKA 1u02A 210 :ADYIEMRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27431 # 1va6A.240.253 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 240 :ETLKQFEKA 1va6A 254 :NDLYEYVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27432 # 1p7tA.240.75 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 240 :ETLKQFEKA 1p7tA 76 :KDKAAYKSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27433 # 2bg5A.240.306 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 240 :ETLKQFEKA 2bg5A 556 :SEAREIEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27434 # 1uw4B.240.223 read from T0506.t2k.many.frag # found chain 1uw4B in template set Warning: unaligning (T0506)T241 (1uw4B)S992 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :E 1uw4B 991 :N T0506 242 :LKQFEKA 1uw4B 993 :LEESIRQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27436 # 1r6wA.240.113 read from T0506.t2k.many.frag # found chain 1r6wA in training set Warning: unaligning (T0506)E240 (1r6wA)G112 because S (epsilon) conformation "forbidden" or filtered. T0506 241 :TLKQFEKA 1r6wA 113 :DPDDLILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=27437 # 1v2xA.240.79 read from T0506.t2k.many.frag # found chain 1v2xA in training set Warning: unaligning (T0506)T241 (1v2xA)D81 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :E 1v2xA 80 :P T0506 242 :LKQFEKA 1v2xA 82 :LHEAFRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27439 # 1kjqA.240.370 read from T0506.t2k.many.frag # found chain 1kjqA in training set T0506 240 :ETLKQFEKA 1kjqA 372 :ESVVDAIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=27440 # 1m4zA.240.201 read from T0506.t2k.many.frag # found chain 1m4zA in template set T0506 240 :ETLKQFEKA 1m4zA 199 :VEPREAQEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27441 # 1i7nA.240.285 read from T0506.t2k.many.frag # found chain 1i7nA in template set T0506 240 :ETLKQFEKA 1i7nA 398 :EHQVEDRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27442 # 1kjnA.240.139 read from T0506.t2k.many.frag # found chain 1kjnA in template set T0506 240 :ETLKQFEKA 1kjnA 140 :HNPAPLRVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27443 # 1e42A.240.179 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 240 :ETLKQFEKA 1e42A 859 :LNADTVSSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27444 # 1nar.240.199 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 240 :ETLKQFEKA 1nar 200 :STDDAFVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27445 # 1ta8A.240.261 read from T0506.t2k.many.frag # found chain 1ta8A in training set T0506 240 :ETLKQFEKA 1ta8A 262 :QSIDEVWAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27446 # 1j27A.240.61 read from T0506.t2k.many.frag # found chain 1j27A in training set T0506 240 :ETLKQFEKA 1j27A 62 :NDPAWVEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=27447 # 1ik9A.240.116 read from T0506.t2k.many.frag # found chain 1ik9A in template set Warning: unaligning (T0506)T241 (1ik9A)N118 because D (zeta) conformation "forbidden" or filtered. T0506 240 :E 1ik9A 117 :E T0506 242 :LKQFEKA 1ik9A 119 :PAEVIRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27449 # 1w8sA.240.207 read from T0506.t2k.many.frag # found chain 1w8sA in template set T0506 240 :ETLKQFEKA 1w8sA 208 :KTEEDFLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27450 1floA expands to /projects/compbio/data/pdb/1flo.pdb.gz 1floA:# 1floA.240.82 read from T0506.t2k.many.frag # adding 1floA to template set # found chain 1floA in template set T0506 240 :ETLKQFEKA 1floA 84 :QKATILEAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27451 # 1byi.240.181 read from T0506.t2k.many.frag # found chain 1byi in training set Warning: unaligning (T0506)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1byi)K182 Warning: unaligning (T0506)T241 because of BadResidue code BAD_PEPTIDE at template residue (1byi)R183 T0506 242 :LKQFEKA 1byi 184 :HAEYMTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27452 # 1vk9A.240.134 read from T0506.t2k.many.frag # found chain 1vk9A in template set T0506 240 :ETLKQFEKA 1vk9A 123 :DDPEEIIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27453 # 1w2yA.240.212 read from T0506.t2k.many.frag # found chain 1w2yA in training set T0506 240 :ETLKQFEKA 1w2yA 213 :LDFDTIYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27454 # 1di1A.240.151 read from T0506.t2k.many.frag # found chain 1di1A in template set T0506 240 :ETLKQFEKA 1di1A 191 :HELGHYLEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27455 1pyaB expands to /projects/compbio/data/pdb/1pya.pdb.gz 1pyaB:# 1pyaB.240.193 read from T0506.t2k.many.frag # adding 1pyaB to template set # found chain 1pyaB in template set T0506 240 :ETLKQFEKA 1pyaB 276 :LTPDKDMEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27456 # 2igd.240.25 read from T0506.t2k.many.frag # found chain 2igd in training set T0506 240 :ETLKQFEKA 2igd 26 :VDAETAEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27457 # 1r8gA.240.198 read from T0506.t2k.many.frag # found chain 1r8gA in template set Warning: unaligning (T0506)T241 (1r8gA)N200 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :E 1r8gA 199 :S T0506 242 :LKQFEKA 1r8gA 201 :WQQFEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27459 # 1zvdA.240.357 read from T0506.t2k.many.frag # found chain 1zvdA in template set Warning: unaligning (T0506)T241 (1zvdA)S727 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :E 1zvdA 726 :E T0506 242 :LKQFEKA 1zvdA 728 :YEKLYEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27461 # 1uocA.240.180 read from T0506.t2k.many.frag # found chain 1uocA in template set T0506 240 :ETLKQFEKA 1uocA 181 :NNKEDFEWW Number of specific fragments extracted= 1 number of extra gaps= 0 total=27462 2bw4A expands to /projects/compbio/data/pdb/2bw4.pdb.gz 2bw4A:Skipped atom 69, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 71, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 106, because occupancy 0.230 <= existing 0.770 in 2bw4A Skipped atom 110, because occupancy 0.230 <= existing 0.770 in 2bw4A Skipped atom 112, because occupancy 0.230 <= existing 0.770 in 2bw4A Skipped atom 114, because occupancy 0.230 <= existing 0.770 in 2bw4A Skipped atom 124, because occupancy 0.300 <= existing 0.370 in 2bw4A Skipped atom 127, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 131, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 133, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 135, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 162, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 164, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 166, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 168, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 170, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 172, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 174, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 176, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 178, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 180, because occupancy 0.290 <= existing 0.700 in 2bw4A Skipped atom 182, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 184, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 186, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 188, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 190, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 196, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 198, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 222, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 224, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 226, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 329, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 333, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 335, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 337, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 367, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 369, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 371, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 373, because occupancy 0.300 <= existing 0.700 in 2bw4A Skipped atom 400, because occupancy 0.300 <= existing 0.300 in 2bw4A Skipped atom 402, because occupancy 0.300 <= existing 0.300 in 2bw4A Skipped atom 436, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 440, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 442, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 444, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 446, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 448, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 450, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 452, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 507, because occupancy 0.080 <= existing 0.920 in 2bw4A Skipped atom 511, because occupancy 0.080 <= existing 0.920 in 2bw4A Skipped atom 513, because occupancy 0.080 <= existing 0.920 in 2bw4A Skipped atom 515, because occupancy 0.080 <= existing 0.920 in 2bw4A Skipped atom 517, because occupancy 0.080 <= existing 0.920 in 2bw4A Skipped atom 573, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 575, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 577, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 579, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 581, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 583, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 585, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 597, because occupancy 0.360 <= existing 0.400 in 2bw4A Skipped atom 602, because occupancy 0.360 <= existing 0.400 in 2bw4A Skipped atom 605, because occupancy 0.360 <= existing 0.400 in 2bw4A Skipped atom 608, because occupancy 0.360 <= existing 0.400 in 2bw4A Skipped atom 611, because occupancy 0.360 <= existing 0.400 in 2bw4A Skipped atom 647, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 651, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 653, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 655, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 657, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 704, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 708, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 710, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 712, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 714, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 716, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 718, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 720, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 747, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 751, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 753, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 755, because occupancy 0.200 <= existing 0.800 in 2bw4A Skipped atom 781, because occupancy 0.380 <= existing 0.620 in 2bw4A Skipped atom 785, because occupancy 0.380 <= existing 0.620 in 2bw4A Skipped atom 787, because occupancy 0.380 <= existing 0.620 in 2bw4A Skipped atom 789, because occupancy 0.380 <= existing 0.620 in 2bw4A Skipped atom 804, because occupancy 0.360 <= existing 0.640 in 2bw4A Skipped atom 806, because occupancy 0.360 <= existing 0.640 in 2bw4A Skipped atom 808, because occupancy 0.360 <= existing 0.640 in 2bw4A Skipped atom 841, because occupancy 0.270 <= existing 0.500 in 2bw4A Skipped atom 843, because occupancy 0.270 <= existing 0.500 in 2bw4A Skipped atom 845, because occupancy 0.270 <= existing 0.500 in 2bw4A Skipped atom 894, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 896, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 898, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 900, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 902, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 904, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 906, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 908, because occupancy 0.340 <= existing 0.660 in 2bw4A Skipped atom 1040, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 1044, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 1046, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 1048, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 1050, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 1052, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 1166, because occupancy 0.200 <= existing 0.500 in 2bw4A Skipped atom 1171, because occupancy 0.200 <= existing 0.500 in 2bw4A Skipped atom 1174, because occupancy 0.200 <= existing 0.500 in 2bw4A Skipped atom 1177, because occupancy 0.200 <= existing 0.500 in 2bw4A Skipped atom 1180, because occupancy 0.200 <= existing 0.500 in 2bw4A Skipped atom 1346, because occupancy 0.380 <= existing 0.620 in 2bw4A Skipped atom 1380, because occupancy 0.330 <= existing 0.360 in 2bw4A Skipped atom 1384, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1385, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1387, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1388, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1390, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1391, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1393, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1394, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1396, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1397, because occupancy 0.330 <= existing 0.330 in 2bw4A Skipped atom 1400, because occupancy 0.390 <= existing 0.610 in 2bw4A Skipped atom 1404, because occupancy 0.390 <= existing 0.610 in 2bw4A Skipped atom 1406, because occupancy 0.390 <= existing 0.610 in 2bw4A Skipped atom 1408, because occupancy 0.390 <= existing 0.610 in 2bw4A Skipped atom 1615, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1617, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1619, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1621, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1623, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1625, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1627, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1629, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1631, because occupancy 0.350 <= existing 0.650 in 2bw4A Skipped atom 1633, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1635, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1637, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1639, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1641, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1643, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1645, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1647, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1649, because occupancy 0.490 <= existing 0.510 in 2bw4A Skipped atom 1651, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1653, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1655, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1657, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1659, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1661, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1663, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1665, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1667, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1669, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1671, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1673, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1675, because occupancy 0.400 <= existing 0.400 in 2bw4A Skipped atom 1677, because occupancy 0.400 <= existing 0.400 in 2bw4A Skipped atom 1679, because occupancy 0.460 <= existing 0.540 in 2bw4A Skipped atom 1681, because occupancy 0.460 <= existing 0.540 in 2bw4A Skipped atom 1683, because occupancy 0.400 <= existing 0.400 in 2bw4A Skipped atom 1685, because occupancy 0.200 <= existing 0.400 in 2bw4A Skipped atom 1687, because occupancy 0.200 <= existing 0.400 in 2bw4A Skipped atom 1689, because occupancy 0.200 <= existing 0.400 in 2bw4A Skipped atom 1691, because occupancy 0.200 <= existing 0.400 in 2bw4A Skipped atom 1693, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 1695, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 1697, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 1699, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 1701, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 1703, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 1705, because occupancy 0.280 <= existing 0.720 in 2bw4A Skipped atom 1753, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1755, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1757, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1759, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1761, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1763, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1765, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1767, because occupancy 0.480 <= existing 0.520 in 2bw4A Skipped atom 1998, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 2002, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 2004, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 2006, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 2008, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 2010, because occupancy 0.320 <= existing 0.680 in 2bw4A Skipped atom 2091, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2095, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2097, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2099, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2101, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2103, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2105, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2107, because occupancy 0.330 <= existing 0.670 in 2bw4A Skipped atom 2268, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 2272, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 2274, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 2276, because occupancy 0.500 <= existing 0.500 in 2bw4A Skipped atom 2278, because occupancy 0.200 <= existing 0.200 in 2bw4A Skipped atom 2280, because occupancy 0.200 <= existing 0.200 in 2bw4A Skipped atom 2282, because occupancy 0.200 <= existing 0.200 in 2bw4A Skipped atom 2284, because occupancy 0.200 <= existing 0.200 in 2bw4A Skipped atom 2321, because occupancy 0.370 <= existing 0.630 in 2bw4A Skipped atom 2323, because occupancy 0.370 <= existing 0.630 in 2bw4A Skipped atom 2325, because occupancy 0.370 <= existing 0.630 in 2bw4A Skipped atom 2360, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2362, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2364, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2366, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2368, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2370, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2372, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2374, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2376, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2378, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2380, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2382, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2384, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2386, because occupancy 0.450 <= existing 0.550 in 2bw4A Skipped atom 2536, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2538, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2540, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2542, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2544, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2633, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2637, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2639, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2641, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2643, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2645, because occupancy 0.400 <= existing 0.600 in 2bw4A Skipped atom 2699, because occupancy 0.410 <= existing 0.590 in 2bw4A Skipped atom 2701, because occupancy 0.410 <= existing 0.590 in 2bw4A Skipped atom 2703, because occupancy 0.410 <= existing 0.590 in 2bw4A Skipped atom 2705, because occupancy 0.410 <= existing 0.590 in 2bw4A Skipped atom 2719, because occupancy 0.370 <= existing 0.630 in 2bw4A Skipped atom 2721, because occupancy 0.370 <= existing 0.630 in 2bw4A Skipped atom 2728, because occupancy 0.290 <= existing 0.710 in 2bw4A Skipped atom 2732, because occupancy 0.290 <= existing 0.710 in 2bw4A Skipped atom 2734, because occupancy 0.290 <= existing 0.300 in 2bw4A Skipped atom 2736, because occupancy 0.290 <= existing 0.300 in 2bw4A Skipped atom 2738, because occupancy 0.290 <= existing 0.300 in 2bw4A Skipped atom 2740, because occupancy 0.290 <= existing 0.300 in 2bw4A Skipped atom 2781, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 2785, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 2787, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 2789, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 2791, because occupancy 0.440 <= existing 0.560 in 2bw4A Skipped atom 2849, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2851, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2853, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2855, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2857, because occupancy 0.300 <= existing 0.300 in 2bw4A Skipped atom 2859, because occupancy 0.300 <= existing 0.300 in 2bw4A Skipped atom 2861, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2863, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2865, because occupancy 0.300 <= existing 0.300 in 2bw4A Skipped atom 2867, because occupancy 0.300 <= existing 0.300 in 2bw4A Skipped atom 2869, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2871, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2873, because occupancy 0.300 <= existing 0.500 in 2bw4A Skipped atom 2875, because occupancy 0.300 <= existing 0.300 in 2bw4A # 2bw4A.240.196 read from T0506.t2k.many.frag # adding 2bw4A to template set # found chain 2bw4A in template set T0506 240 :ETLKQFEKA 2bw4A 197 :ETPGEAYED Number of specific fragments extracted= 1 number of extra gaps= 0 total=27463 # 1mswD.240.472 read from T0506.t2k.many.frag # found chain 1mswD in template set Warning: unaligning (T0506)E240 (1mswD)V473 because E (beta_S) conformation "forbidden" or filtered. T0506 241 :TLKQFEKA 1mswD 474 :PFPERIKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27464 # 2az4A.240.234 read from T0506.t2k.many.frag # found chain 2az4A in template set Warning: unaligning (T0506)T241 (2az4A)S236 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :E 2az4A 235 :V T0506 242 :LKQFEKA 2az4A 237 :EEDLVQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=27466 # 1u02A.241.210 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 241 :TLKQFEKAL 1u02A 211 :DYIEMRKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27467 # 1m4zA.241.202 read from T0506.t2k.many.frag # found chain 1m4zA in template set T0506 241 :TLKQFEKAL 1m4zA 200 :EPREAQEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27468 # 1i7nA.241.286 read from T0506.t2k.many.frag # found chain 1i7nA in template set T0506 241 :TLKQFEKAL 1i7nA 399 :HQVEDRQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27469 # 1va6A.241.254 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 241 :TLKQFEKAL 1va6A 255 :DLYEYVAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27470 # 1v2xA.241.80 read from T0506.t2k.many.frag # found chain 1v2xA in training set T0506 241 :TLKQFEKAL 1v2xA 81 :DLHEAFRFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27471 # 1p7tA.241.76 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 241 :TLKQFEKAL 1p7tA 77 :DKAAYKSFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27472 # 1gu7A.241.203 read from T0506.t2k.many.frag # found chain 1gu7A in training set T0506 241 :TLKQFEKAL 1gu7A 226 :NLDEVVASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27473 # 1kjqA.241.371 read from T0506.t2k.many.frag # found chain 1kjqA in training set T0506 241 :TLKQFEKAL 1kjqA 373 :SVVDAIERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27474 # 1byi.241.182 read from T0506.t2k.many.frag # found chain 1byi in training set Warning: unaligning (T0506)T241 because of BadResidue code BAD_PEPTIDE at template residue (1byi)R183 T0506 242 :LKQFEKAL 1byi 184 :HAEYMTTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27475 # 1ta8A.241.262 read from T0506.t2k.many.frag # found chain 1ta8A in training set Warning: unaligning (T0506)T241 (1ta8A)S263 because Y (epsilon') conformation "forbidden" or filtered. T0506 242 :LKQFEKAL 1ta8A 264 :IDEVWAYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27476 # 1nar.241.200 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 241 :TLKQFEKAL 1nar 201 :TDDAFVEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27477 # 1r6wA.241.114 read from T0506.t2k.many.frag # found chain 1r6wA in training set T0506 241 :TLKQFEKAL 1r6wA 113 :DPDDLILKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27478 # 2bg5A.241.307 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 241 :TLKQFEKAL 2bg5A 557 :EAREIEKMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27479 # 1ik9A.241.117 read from T0506.t2k.many.frag # found chain 1ik9A in template set T0506 241 :TLKQFEKAL 1ik9A 118 :NPAEVIREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27480 # 1w2yA.241.213 read from T0506.t2k.many.frag # found chain 1w2yA in training set T0506 241 :TLKQFEKAL 1w2yA 214 :DFDTIYKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27481 # 1w8sA.241.208 read from T0506.t2k.many.frag # found chain 1w8sA in template set T0506 241 :TLKQFEKAL 1w8sA 209 :TEEDFLKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27482 # 1uw4B.241.224 read from T0506.t2k.many.frag # found chain 1uw4B in template set T0506 241 :TLKQFEKAL 1uw4B 992 :SLEESIRQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27483 # 1e42A.241.180 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 241 :TLKQFEKAL 1e42A 860 :NADTVSSKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27484 # 1qg8A.241.240 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 241 :TLKQFEKAL 1qg8A 242 :NCRELRESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27485 # 1kjnA.241.140 read from T0506.t2k.many.frag # found chain 1kjnA in template set T0506 241 :TLKQFEKAL 1kjnA 141 :NPAPLRVRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27486 # 1cs1A.241.367 read from T0506.t2k.many.frag # found chain 1cs1A in training set T0506 241 :TLKQFEKAL 1cs1A 368 :DGEDLIADL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27487 # 2az4A.241.235 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 241 :TLKQFEKAL 2az4A 236 :SEEDLVQHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27488 # 1pyaB.241.194 read from T0506.t2k.many.frag # found chain 1pyaB in template set T0506 241 :TLKQFEKAL 1pyaB 277 :TPDKDMEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27489 1u9tA expands to /projects/compbio/data/pdb/1u9t.pdb.gz 1u9tA:# 1u9tA.241.335 read from T0506.t2k.many.frag # adding 1u9tA to template set # found chain 1u9tA in template set T0506 241 :TLKQFEKAL 1u9tA 324 :EQAQWRKQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27490 # 1hf2A.241.19 read from T0506.t2k.many.frag # found chain 1hf2A in template set T0506 241 :TLKQFEKAL 1hf2A 20 :NLEEVLNAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27491 # 1nd4A.241.165 read from T0506.t2k.many.frag # found chain 1nd4A in template set T0506 241 :TLKQFEKAL 1nd4A 166 :APAELFARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27492 # 1usgA.241.180 read from T0506.t2k.many.frag # found chain 1usgA in training set T0506 241 :TLKQFEKAL 1usgA 181 :DFSALIARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27493 # 1mswD.241.473 read from T0506.t2k.many.frag # found chain 1mswD in template set T0506 241 :TLKQFEKAL 1mswD 474 :PFPERIKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27494 1gw5S expands to /projects/compbio/data/pdb/1gw5.pdb.gz 1gw5S:# 1gw5S.241.126 read from T0506.t2k.many.frag # adding 1gw5S to template set # found chain 1gw5S in template set T0506 241 :TLKQFEKAL 1gw5S 127 :SQTKVLKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27495 # 1floA.241.83 read from T0506.t2k.many.frag # found chain 1floA in template set T0506 241 :TLKQFEKAL 1floA 85 :KATILEASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27496 # 1m4zA.242.203 read from T0506.t2k.many.frag # found chain 1m4zA in template set T0506 242 :LKQFEKALA 1m4zA 201 :PREAQEYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27497 # 1u02A.242.211 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 242 :LKQFEKALA 1u02A 212 :YIEMRKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27498 # 1i7nA.242.287 read from T0506.t2k.many.frag # found chain 1i7nA in template set T0506 242 :LKQFEKALA 1i7nA 400 :QVEDRQLIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27499 # 1va6A.242.255 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 242 :LKQFEKALA 1va6A 256 :LYEYVAGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27500 # 1w2yA.242.214 read from T0506.t2k.many.frag # found chain 1w2yA in training set T0506 242 :LKQFEKALA 1w2yA 215 :FDTIYKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27501 # 1u9tA.242.336 read from T0506.t2k.many.frag # found chain 1u9tA in template set T0506 242 :LKQFEKALA 1u9tA 325 :QAQWRKQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27502 # 1v2xA.242.81 read from T0506.t2k.many.frag # found chain 1v2xA in training set T0506 242 :LKQFEKALA 1v2xA 82 :LHEAFRFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27503 # 2bg5A.242.308 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 242 :LKQFEKALA 2bg5A 558 :AREIEKMMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27504 # 1gu7A.242.204 read from T0506.t2k.many.frag # found chain 1gu7A in training set T0506 242 :LKQFEKALA 1gu7A 227 :LDEVVASLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27505 # 1p7tA.242.77 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 242 :LKQFEKALA 1p7tA 78 :KAAYKSFLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27506 # 1byi.242.183 read from T0506.t2k.many.frag # found chain 1byi in training set T0506 242 :LKQFEKALA 1byi 184 :HAEYMTTLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27507 # 1ta8A.242.263 read from T0506.t2k.many.frag # found chain 1ta8A in training set T0506 242 :LKQFEKALA 1ta8A 264 :IDEVWAYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27508 # 1floA.242.84 read from T0506.t2k.many.frag # found chain 1floA in template set T0506 242 :LKQFEKALA 1floA 86 :ATILEASLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27509 # 1qg8A.242.241 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 242 :LKQFEKALA 1qg8A 243 :CRELRESLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27510 # 1nar.242.201 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 242 :LKQFEKALA 1nar 202 :DDAFVEIFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27511 # 2az4A.242.236 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 242 :LKQFEKALA 2az4A 237 :EEDLVQHLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27512 # 1gw5S.242.127 read from T0506.t2k.many.frag # found chain 1gw5S in template set T0506 242 :LKQFEKALA 1gw5S 128 :QTKVLKQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27513 2cxaA expands to /projects/compbio/data/pdb/2cxa.pdb.gz 2cxaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 297, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 301, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 305, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 742, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 744, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1144, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1146, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1148, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1150, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1152, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1154, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1156, because occupancy 0.500 <= existing 0.500 in 2cxaA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cxaA.242.220 read from T0506.t2k.many.frag # adding 2cxaA to template set # found chain 2cxaA in template set T0506 242 :LKQFEKALA 2cxaA 204 :RRDYLNYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27514 # 1pyaB.242.195 read from T0506.t2k.many.frag # found chain 1pyaB in template set T0506 242 :LKQFEKALA 1pyaB 278 :PDKDMEIME Number of specific fragments extracted= 1 number of extra gaps= 0 total=27515 # 1kjqA.242.372 read from T0506.t2k.many.frag # found chain 1kjqA in training set T0506 242 :LKQFEKALA 1kjqA 374 :VVDAIERAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27516 # 1ccwA.242.100 read from T0506.t2k.many.frag # found chain 1ccwA in training set T0506 242 :LKQFEKALA 1ccwA 101 :WPDVEKRFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27517 # 1r26A.242.110 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 242 :LKQFEKALA 1r26A 92 :PGMLRQKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27518 # 1zvdA.242.359 read from T0506.t2k.many.frag # found chain 1zvdA in template set T0506 242 :LKQFEKALA 1zvdA 728 :YEKLYEKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27519 # 1w8sA.242.209 read from T0506.t2k.many.frag # found chain 1w8sA in template set T0506 242 :LKQFEKALA 1w8sA 210 :EEDFLKQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27520 # 1mswD.242.474 read from T0506.t2k.many.frag # found chain 1mswD in template set T0506 242 :LKQFEKALA 1mswD 475 :FPERIKFIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27521 # 1cs1A.242.368 read from T0506.t2k.many.frag # found chain 1cs1A in training set T0506 242 :LKQFEKALA 1cs1A 369 :GEDLIADLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27522 # 1e42A.242.181 read from T0506.t2k.many.frag # found chain 1e42A in training set T0506 242 :LKQFEKALA 1e42A 861 :ADTVSSKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27523 # 1i60A.242.226 read from T0506.t2k.many.frag # found chain 1i60A in training set T0506 242 :LKQFEKALA 1i60A 227 :LDAHLSALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27524 2f6lA expands to /projects/compbio/data/pdb/2f6l.pdb.gz 2f6lA:Skipped atom 54, because occupancy 0.300 <= existing 0.700 in 2f6lA Skipped atom 56, because occupancy 0.300 <= existing 0.700 in 2f6lA Skipped atom 58, because occupancy 0.300 <= existing 0.700 in 2f6lA Skipped atom 60, because occupancy 0.300 <= existing 0.700 in 2f6lA Skipped atom 220, because occupancy 0.400 <= existing 0.600 in 2f6lA Skipped atom 222, because occupancy 0.400 <= existing 0.600 in 2f6lA Skipped atom 224, because occupancy 0.400 <= existing 0.600 in 2f6lA Skipped atom 226, because occupancy 0.400 <= existing 0.600 in 2f6lA Skipped atom 228, because occupancy 0.400 <= existing 0.600 in 2f6lA Skipped atom 230, because occupancy 0.400 <= existing 0.600 in 2f6lA Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 268, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 270, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 328, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 366, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 430, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 432, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 434, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 436, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 572, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 574, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 576, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 578, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 580, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 582, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 856, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 895, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 897, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 1134, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 1136, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 2f6lA Skipped atom 1144, because occupancy 0.500 <= existing 0.500 in 2f6lA # 2f6lA.242.96 read from T0506.t2k.many.frag # adding 2f6lA to template set # found chain 2f6lA in template set T0506 242 :LKQFEKALA 2f6lA 130 :LSASRSAID Number of specific fragments extracted= 1 number of extra gaps= 0 total=27525 # 1nd4A.242.166 read from T0506.t2k.many.frag # found chain 1nd4A in template set T0506 242 :LKQFEKALA 1nd4A 167 :PAELFARLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27526 # 1m4zA.243.204 read from T0506.t2k.many.frag # found chain 1m4zA in template set T0506 243 :KQFEKALAQ 1m4zA 202 :REAQEYLKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27527 # 1u9tA.243.337 read from T0506.t2k.many.frag # found chain 1u9tA in template set T0506 243 :KQFEKALAQ 1u9tA 326 :AQWRKQIAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27528 # 1w2yA.243.215 read from T0506.t2k.many.frag # found chain 1w2yA in training set T0506 243 :KQFEKALAQ 1w2yA 216 :DTIYKKLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27529 # 1i7nA.243.288 read from T0506.t2k.many.frag # found chain 1i7nA in template set T0506 243 :KQFEKALAQ 1i7nA 401 :VEDRQLITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27530 # 1gu7A.243.205 read from T0506.t2k.many.frag # found chain 1gu7A in training set T0506 243 :KQFEKALAQ 1gu7A 228 :DEVVASLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27531 # 1floA.243.85 read from T0506.t2k.many.frag # found chain 1floA in template set T0506 243 :KQFEKALAQ 1floA 87 :TILEASLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27532 # 1r26A.243.111 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 243 :KQFEKALAQ 1r26A 93 :GMLRQKLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27533 # 1va6A.243.256 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 243 :KQFEKALAQ 1va6A 257 :YEYVAGLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27534 # 1qg8A.243.242 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 243 :KQFEKALAQ 1qg8A 244 :RELRESLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27535 # 1gw5S.243.128 read from T0506.t2k.many.frag # found chain 1gw5S in template set T0506 243 :KQFEKALAQ 1gw5S 129 :TKVLKQLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27536 # 2az4A.243.237 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 243 :KQFEKALAQ 2az4A 238 :EDLVQHLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27537 # 1u02A.243.212 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 243 :KQFEKALAQ 1u02A 213 :IEMRKILKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27538 # 1v2xA.243.82 read from T0506.t2k.many.frag # found chain 1v2xA in training set T0506 243 :KQFEKALAQ 1v2xA 83 :HEAFRFLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27539 # 2cxaA.243.221 read from T0506.t2k.many.frag # found chain 2cxaA in template set T0506 243 :KQFEKALAQ 2cxaA 205 :RDYLNYLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27540 # 2bg5A.243.309 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 243 :KQFEKALAQ 2bg5A 559 :REIEKMMKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27541 # 1i60A.243.227 read from T0506.t2k.many.frag # found chain 1i60A in training set T0506 243 :KQFEKALAQ 1i60A 228 :DAHLSALKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27542 # 1byi.243.184 read from T0506.t2k.many.frag # found chain 1byi in training set T0506 243 :KQFEKALAQ 1byi 185 :AEYMTTLTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27543 # 1ccwA.243.101 read from T0506.t2k.many.frag # found chain 1ccwA in training set T0506 243 :KQFEKALAQ 1ccwA 102 :PDVEKRFKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27544 # 1g8mA.243.569 read from T0506.t2k.many.frag # found chain 1g8mA in training set T0506 243 :KQFEKALAQ 1g8mA 570 :EVVIEACNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27545 # 2f6lA.243.97 read from T0506.t2k.many.frag # found chain 2f6lA in template set T0506 243 :KQFEKALAQ 2f6lA 131 :SASRSAIDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27546 # 1p7tA.243.78 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 243 :KQFEKALAQ 1p7tA 79 :AAYKSFLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27547 1ynpA expands to /projects/compbio/data/pdb/1ynp.pdb.gz 1ynpA:Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1243, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1674, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1676, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1678, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1933, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1935, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1961, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1991, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1993, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 1995, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 2073, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 2075, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 2244, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 2246, because occupancy 0.500 <= existing 0.500 in 1ynpA Skipped atom 2248, because occupancy 0.500 <= existing 0.500 in 1ynpA # 1ynpA.243.147 read from T0506.t2k.many.frag # adding 1ynpA to template set # found chain 1ynpA in template set T0506 243 :KQFEKALAQ 1ynpA 128 :DETIEAFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27548 # 1vmhA.243.69 read from T0506.t2k.many.frag # found chain 1vmhA in training set T0506 243 :KQFEKALAQ 1vmhA 58 :DVTRDILVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27549 # 1c7kA.243.118 read from T0506.t2k.many.frag # found chain 1c7kA in training set T0506 243 :KQFEKALAQ 1c7kA 119 :AQERSRVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27550 # 1a8y.243.336 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 243 :KQFEKALAQ 1a8y 337 :EELEDWLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=27551 # 1zvdA.243.360 read from T0506.t2k.many.frag # found chain 1zvdA in template set T0506 243 :KQFEKALAQ 1zvdA 729 :EKLYEKLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27552 # 1vr7A.243.101 read from T0506.t2k.many.frag # found chain 1vr7A in training set T0506 243 :KQFEKALAQ 1vr7A 90 :WKAFEHLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27553 # 1wy5A.243.69 read from T0506.t2k.many.frag # found chain 1wy5A in template set T0506 243 :KQFEKALAQ 1wy5A 70 :ERDEEFCKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27554 2a1iA expands to /projects/compbio/data/pdb/2a1i.pdb.gz 2a1iA:# 2a1iA.243.97 read from T0506.t2k.many.frag # adding 2a1iA to template set # found chain 2a1iA in template set T0506 243 :KQFEKALAQ 2a1iA 179 :QQALKELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27555 # 1cs1A.243.369 read from T0506.t2k.many.frag # found chain 1cs1A in training set T0506 243 :KQFEKALAQ 1cs1A 370 :EDLIADLEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27556 # 1m4zA.244.205 read from T0506.t2k.many.frag # found chain 1m4zA in template set T0506 244 :QFEKALAQL 1m4zA 203 :EAQEYLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27557 # 1floA.244.86 read from T0506.t2k.many.frag # found chain 1floA in template set T0506 244 :QFEKALAQL 1floA 88 :ILEASLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27558 # 1u9tA.244.338 read from T0506.t2k.many.frag # found chain 1u9tA in template set T0506 244 :QFEKALAQL 1u9tA 327 :QWRKQIASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27559 # 1w2yA.244.216 read from T0506.t2k.many.frag # found chain 1w2yA in training set T0506 244 :QFEKALAQL 1w2yA 217 :TIYKKLEEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27560 # 1va6A.244.257 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 244 :QFEKALAQL 1va6A 258 :EYVAGLKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27561 # 2cxaA.244.222 read from T0506.t2k.many.frag # found chain 2cxaA in template set T0506 244 :QFEKALAQL 2cxaA 206 :DYLNYLNQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27562 # 1gu7A.244.206 read from T0506.t2k.many.frag # found chain 1gu7A in training set T0506 244 :QFEKALAQL 1gu7A 229 :EVVASLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27563 # 1qg8A.244.243 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 244 :QFEKALAQL 1qg8A 245 :ELRESLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27564 # 2az4A.244.238 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 244 :QFEKALAQL 2az4A 239 :DLVQHLVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27565 # 1r26A.244.112 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 244 :QFEKALAQL 1r26A 94 :MLRQKLRDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27566 # 1ccwA.244.102 read from T0506.t2k.many.frag # found chain 1ccwA in training set T0506 244 :QFEKALAQL 1ccwA 103 :DVEKRFKDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27567 2f2gA expands to /projects/compbio/data/pdb/2f2g.pdb.gz 2f2gA:Skipped atom 187, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 189, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 191, because occupancy 0.350 <= existing 0.650 in 2f2gA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1217, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1219, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1221, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1223, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1345, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1347, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1349, because occupancy 0.350 <= existing 0.650 in 2f2gA Skipped atom 1351, because occupancy 0.350 <= existing 0.650 in 2f2gA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2f2gA.244.113 read from T0506.t2k.many.frag # adding 2f2gA to template set # found chain 2f2gA in template set T0506 244 :QFEKALAQL 2f2gA 114 :EYGRFLEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27568 # 1i60A.244.228 read from T0506.t2k.many.frag # found chain 1i60A in training set T0506 244 :QFEKALAQL 1i60A 229 :AHLSALKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27569 # 1gw5S.244.129 read from T0506.t2k.many.frag # found chain 1gw5S in template set T0506 244 :QFEKALAQL 1gw5S 130 :KVLKQLLML Number of specific fragments extracted= 1 number of extra gaps= 0 total=27570 # 2bg5A.244.310 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 244 :QFEKALAQL 2bg5A 560 :EIEKMMKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27571 # 1vmhA.244.70 read from T0506.t2k.many.frag # found chain 1vmhA in training set T0506 244 :QFEKALAQL 1vmhA 59 :VTRDILVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27572 # 1u02A.244.213 read from T0506.t2k.many.frag # found chain 1u02A in template set T0506 244 :QFEKALAQL 1u02A 214 :EMRKILKFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27573 # 1nar.244.203 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 244 :QFEKALAQL 1nar 204 :AFVEIFKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27574 # 1a8y.244.337 read from T0506.t2k.many.frag # found chain 1a8y in template set T0506 244 :QFEKALAQL 1a8y 338 :ELEDWLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27575 # 1vgjA.244.138 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 244 :QFEKALAQL 1vgjA 139 :GLTMKLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27576 # 1vr7A.244.102 read from T0506.t2k.many.frag # found chain 1vr7A in training set T0506 244 :QFEKALAQL 1vr7A 91 :KAFEHLKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27577 # 1p7tA.244.79 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 244 :QFEKALAQL 1p7tA 80 :AYKSFLREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27578 # 1o6dA.244.81 read from T0506.t2k.many.frag # found chain 1o6dA in training set T0506 244 :QFEKALAQL 1o6dA 80 :EFADFLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27579 # 2a1iA.244.98 read from T0506.t2k.many.frag # found chain 2a1iA in template set T0506 244 :QFEKALAQL 2a1iA 180 :QALKELAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27580 # 1ynpA.244.148 read from T0506.t2k.many.frag # found chain 1ynpA in template set T0506 244 :QFEKALAQL 1ynpA 129 :ETIEAFEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27581 # 1zvdA.244.361 read from T0506.t2k.many.frag # found chain 1zvdA in template set T0506 244 :QFEKALAQL 1zvdA 730 :KLYEKLLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27582 # 1wy5A.244.70 read from T0506.t2k.many.frag # found chain 1wy5A in template set T0506 244 :QFEKALAQL 1wy5A 71 :RDEEFCKEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27583 # 1c7kA.244.119 read from T0506.t2k.many.frag # found chain 1c7kA in training set T0506 244 :QFEKALAQL 1c7kA 120 :QERSRVNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27584 # 1v2xA.244.83 read from T0506.t2k.many.frag # found chain 1v2xA in training set T0506 244 :QFEKALAQL 1v2xA 84 :EAFRFLKER Number of specific fragments extracted= 1 number of extra gaps= 0 total=27585 # 1byi.244.185 read from T0506.t2k.many.frag # found chain 1byi in training set T0506 244 :QFEKALAQL 1byi 186 :EYMTTLTRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27586 # 1m4zA.245.206 read from T0506.t2k.many.frag # found chain 1m4zA in template set T0506 245 :FEKALAQLL 1m4zA 204 :AQEYLKDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27587 # 1floA.245.87 read from T0506.t2k.many.frag # found chain 1floA in template set Warning: unaligning (T0506)L253 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 T0506 245 :FEKALAQL 1floA 89 :LEASLKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27588 # 1w2yA.245.217 read from T0506.t2k.many.frag # found chain 1w2yA in training set T0506 245 :FEKALAQLL 1w2yA 218 :IYKKLEECY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27589 # 2cxaA.245.223 read from T0506.t2k.many.frag # found chain 2cxaA in template set T0506 245 :FEKALAQLL 2cxaA 207 :YLNYLNQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27590 # 1va6A.245.258 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 245 :FEKALAQLL 1va6A 259 :YVAGLKQAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27591 # 2bg5A.245.311 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 245 :FEKALAQLL 2bg5A 561 :IEKMMKDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27592 # 1u9tA.245.339 read from T0506.t2k.many.frag # found chain 1u9tA in template set T0506 245 :FEKALAQLL 1u9tA 328 :WRKQIASLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27593 # 1vgjA.245.139 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 245 :FEKALAQLL 1vgjA 140 :LTMKLKELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27594 # 2f2gA.245.114 read from T0506.t2k.many.frag # found chain 2f2gA in template set T0506 245 :FEKALAQLL 2f2gA 115 :YGRFLEDLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27595 # 1r26A.245.113 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 245 :FEKALAQLL 1r26A 95 :LRQKLRDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=27596 # 2az4A.245.239 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 245 :FEKALAQLL 2az4A 240 :LVQHLVRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27597 # 1gu7A.245.207 read from T0506.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0506)L253 (1gu7A)G238 because T (delta_L) conformation "forbidden" or filtered. T0506 245 :FEKALAQL 1gu7A 230 :VVASLKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27598 # 1o6dA.245.82 read from T0506.t2k.many.frag # found chain 1o6dA in training set T0506 245 :FEKALAQLL 1o6dA 81 :FADFLKDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27599 # 1vr7A.245.103 read from T0506.t2k.many.frag # found chain 1vr7A in training set T0506 245 :FEKALAQLL 1vr7A 92 :AFEHLKKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27600 # 1a8y.245.338 read from T0506.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0506)L253 because last residue in template chain is (1a8y)L347 T0506 245 :FEKALAQL 1a8y 339 :LEDWLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27601 2bfdB expands to /projects/compbio/data/pdb/2bfd.pdb.gz 2bfdB:Skipped atom 3416, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3418, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3420, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3422, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3424, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3426, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3428, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3430, because occupancy 0.410 <= existing 0.590 in 2bfdB Skipped atom 3513, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3515, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3517, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3519, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3521, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3523, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3525, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3527, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 3666, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3667, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3669, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3670, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3672, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3673, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3675, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3676, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3678, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3679, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3681, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3682, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3684, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3685, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3687, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3688, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3690, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3691, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3693, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3694, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3696, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 3697, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4347, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4349, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4351, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4353, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4355, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4357, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4359, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4361, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4363, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4365, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4396, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4397, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4399, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4400, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4402, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4403, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4405, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4406, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4408, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4409, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4411, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4412, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4414, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4415, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4417, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4418, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4420, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4421, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4423, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4424, because occupancy 0.330 <= existing 0.330 in 2bfdB Skipped atom 4441, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4443, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4445, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4447, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4449, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4451, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4511, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4513, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4515, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4517, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4519, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4521, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 4788, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 4790, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 4792, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 4794, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 4796, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 4798, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 4800, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 4802, because occupancy 0.280 <= existing 0.720 in 2bfdB Skipped atom 5140, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5142, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5144, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5146, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5148, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5150, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5152, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5154, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5156, because occupancy 0.440 <= existing 0.560 in 2bfdB Skipped atom 5436, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5438, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5440, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5442, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5444, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5446, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5448, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5450, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5452, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5454, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5456, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5558, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5560, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5562, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5564, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5566, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5568, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5593, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5595, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5597, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5599, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5601, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5603, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5619, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5621, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5623, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5625, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5627, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5629, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5631, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5633, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5635, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5725, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5727, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5729, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5731, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5733, because occupancy 0.500 <= existing 0.500 in 2bfdB Skipped atom 5735, because occupancy 0.500 <= existing 0.500 in 2bfdB # 2bfdB.245.334 read from T0506.t2k.many.frag # adding 2bfdB to template set # found chain 2bfdB in template set T0506 245 :FEKALAQLL 2bfdB 332 :CYDALRKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27602 # 1tn6B.245.77 read from T0506.t2k.many.frag # found chain 1tn6B in training set T0506 245 :FEKALAQLL 1tn6B 578 :HFHYLKRGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27603 # 1qg8A.245.244 read from T0506.t2k.many.frag # found chain 1qg8A in training set Warning: unaligning (T0506)L253 (1qg8A)G254 because L (left) conformation "forbidden" or filtered. T0506 245 :FEKALAQL 1qg8A 246 :LRESLKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27604 # 1ccwA.245.103 read from T0506.t2k.many.frag # found chain 1ccwA in training set T0506 245 :FEKALAQLL 1ccwA 104 :VEKRFKDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27605 1lw7A expands to /projects/compbio/data/pdb/1lw7.pdb.gz 1lw7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1lw7A.245.95 read from T0506.t2k.many.frag # adding 1lw7A to template set # found chain 1lw7A in template set T0506 245 :FEKALAQLL 1lw7A 152 :WSEAVKTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=27606 # 1nar.245.204 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 245 :FEKALAQLL 1nar 205 :FVEIFKSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27607 # 1wy5A.245.71 read from T0506.t2k.many.frag # found chain 1wy5A in template set T0506 245 :FEKALAQLL 1wy5A 72 :DEEFCKEFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27608 1ckmA expands to /projects/compbio/data/pdb/1ckm.pdb.gz 1ckmA:# 1ckmA.245.198 read from T0506.t2k.many.frag # adding 1ckmA to template set # found chain 1ckmA in template set T0506 245 :FEKALAQLL 1ckmA 199 :IKDHLKKAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27609 2b1eA expands to /projects/compbio/data/pdb/2b1e.pdb.gz 2b1eA:# 2b1eA.245.554 read from T0506.t2k.many.frag # adding 2b1eA to template set # found chain 2b1eA in template set T0506 245 :FEKALAQLL 2b1eA 614 :LTTVLNQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27610 # 1w9hA.245.263 read from T0506.t2k.many.frag # found chain 1w9hA in template set T0506 245 :FEKALAQLL 1w9hA 264 :ETKILKETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27611 # 2a1iA.245.99 read from T0506.t2k.many.frag # found chain 2a1iA in template set T0506 245 :FEKALAQLL 2a1iA 181 :ALKELAKMC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27612 # 1p7tA.245.80 read from T0506.t2k.many.frag # found chain 1p7tA in template set T0506 245 :FEKALAQLL 1p7tA 81 :YKSFLRELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27613 # 1ualA.245.252 read from T0506.t2k.many.frag # found chain 1ualA in training set T0506 245 :FEKALAQLL 1ualA 233 :QRKLLKEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=27614 # 1dfmA.245.147 read from T0506.t2k.many.frag # found chain 1dfmA in training set T0506 245 :FEKALAQLL 1dfmA 148 :AQNQLNSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27615 1k8kE expands to /projects/compbio/data/pdb/1k8k.pdb.gz 1k8kE:# 1k8kE.245.90 read from T0506.t2k.many.frag # adding 1k8kE to template set # found chain 1k8kE in template set T0506 245 :FEKALAQLL 1k8kE 91 :GEKEMYTLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=27616 # 1m4zA.246.207 read from T0506.t2k.many.frag # found chain 1m4zA in template set T0506 246 :EKALAQLLK 1m4zA 205 :QEYLKDLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27617 # 1floA.246.88 read from T0506.t2k.many.frag # found chain 1floA in template set Warning: unaligning (T0506)L253 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 Warning: unaligning (T0506)K254 because of BadResidue code BAD_PEPTIDE at template residue (1floA)P98 T0506 246 :EKALAQL 1floA 90 :EASLKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27618 # 1w2yA.246.218 read from T0506.t2k.many.frag # found chain 1w2yA in training set T0506 246 :EKALAQLLK 1w2yA 219 :YKKLEECYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27619 # 1u9tA.246.340 read from T0506.t2k.many.frag # found chain 1u9tA in template set T0506 246 :EKALAQLLK 1u9tA 329 :RKQIASLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27620 # 2f2gA.246.115 read from T0506.t2k.many.frag # found chain 2f2gA in template set Warning: unaligning (T0506)K254 (2f2gA)S124 because P (beta_P) conformation "forbidden" or filtered. T0506 246 :EKALAQLL 2f2gA 116 :GRFLEDLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=27621 # 1r26A.246.114 read from T0506.t2k.many.frag # found chain 1r26A in training set T0506 246 :EKALAQLLK 1r26A 96 :RQKLRDIIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27622 # 1vgjA.246.140 read from T0506.t2k.many.frag # found chain 1vgjA in template set T0506 246 :EKALAQLLK 1vgjA 141 :TMKLKELAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27623 # 1va6A.246.259 read from T0506.t2k.many.frag # found chain 1va6A in template set T0506 246 :EKALAQLLK 1va6A 260 :VAGLKQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27624 # 2cxaA.246.224 read from T0506.t2k.many.frag # found chain 2cxaA in template set T0506 246 :EKALAQLLK 2cxaA 208 :LNYLNQMRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27625 # 2bg5A.246.312 read from T0506.t2k.many.frag # found chain 2bg5A in template set T0506 246 :EKALAQLLK 2bg5A 562 :EKMMKDVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27626 # 2az4A.246.240 read from T0506.t2k.many.frag # found chain 2az4A in template set T0506 246 :EKALAQLLK 2az4A 241 :VQHLVRLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27627 # 2bfdB.246.335 read from T0506.t2k.many.frag # found chain 2bfdB in template set T0506 246 :EKALAQLLK 2bfdB 333 :YDALRKMIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27628 # 1gu7A.246.208 read from T0506.t2k.many.frag # found chain 1gu7A in training set Warning: unaligning (T0506)K254 (1gu7A)A239 because P (beta_P) conformation "forbidden" or filtered. T0506 246 :EKALAQLL 1gu7A 231 :VASLKELG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27629 # 1qg8A.246.245 read from T0506.t2k.many.frag # found chain 1qg8A in training set T0506 246 :EKALAQLLK 1qg8A 247 :RESLKKLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27630 # 1nar.246.205 read from T0506.t2k.many.frag # found chain 1nar in training set T0506 246 :EKALAQLLK 1nar 206 :VEIFKSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27631 # 1ccwA.246.104 read from T0506.t2k.many.frag # found chain 1ccwA in training set Warning: unaligning (T0506)K254 (1ccwA)Y113 because P (beta_P) conformation "forbidden" or filtered. T0506 246 :EKALAQLL 1ccwA 105 :EKRFKDMG Number of specific fragments extracted= 1 number of extra gaps= 1 total=27632 # 1o6dA.246.83 read from T0506.t2k.many.frag # found chain 1o6dA in training set T0506 246 :EKALAQLLK 1o6dA 82 :ADFLKDLEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27633 # 1tn6B.246.78 read from T0506.t2k.many.frag # found chain 1tn6B in training set T0506 246 :EKALAQLLK 1tn6B 579 :FHYLKRGLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27634 # 2a1iA.246.100 read from T0506.t2k.many.frag # found chain 2a1iA in template set T0506 246 :EKALAQLLK 2a1iA 182 :LKELAKMCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27635 # 1vr7A.246.104 read from T0506.t2k.many.frag # found chain 1vr7A in training set Warning: unaligning (T0506)K254 (1vr7A)K101 because L (left) conformation "forbidden" or filtered. T0506 246 :EKALAQLL 1vr7A 93 :FEHLKKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27636 # 1a8y.246.339 read from T0506.t2k.many.frag # found chain 1a8y in template set Warning: unaligning (T0506)L253 because last residue in template chain is (1a8y)L347 T0506 246 :EKALAQL 1a8y 340 :EDWLEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27637 2b4jC expands to /projects/compbio/data/pdb/2b4j.pdb.gz 2b4jC:# 2b4jC.246.29 read from T0506.t2k.many.frag # adding 2b4jC to template set # found chain 2b4jC in template set T0506 246 :EKALAQLLK 2b4jC 374 :IEALDELAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27638 # 1wy5A.246.72 read from T0506.t2k.many.frag # found chain 1wy5A in template set T0506 246 :EKALAQLLK 1wy5A 73 :EEFCKEFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27639 # 1w9hA.246.264 read from T0506.t2k.many.frag # found chain 1w9hA in template set T0506 246 :EKALAQLLK 1w9hA 265 :TKILKETVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27640 # 2fa8A.246.76 read from T0506.t2k.many.frag # found chain 2fa8A in template set T0506 246 :EKALAQLLK 2fa8A 75 :KQRIRDLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=27641 1y93A expands to /projects/compbio/data/pdb/1y93.pdb.gz 1y93A:# 1y93A.246.150 read from T0506.t2k.many.frag # adding 1y93A to template set # found chain 1y93A in template set Warning: unaligning (T0506)K254 (1y93A)G263 because S (epsilon) conformation "forbidden" or filtered. T0506 246 :EKALAQLL 1y93A 255 :IRGIQSLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=27642 # 1qftA.246.148 read from T0506.t2k.many.frag # found chain 1qftA in training set T0506 246 :EKALAQLLK 1qftA 149 :LNKFNEYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27643 # 2b1eA.246.555 read from T0506.t2k.many.frag # found chain 2b1eA in template set T0506 246 :EKALAQLLK 2b1eA 615 :TTVLNQLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27644 # 2pth.246.183 read from T0506.t2k.many.frag # found chain 2pth in training set Warning: unaligning (T0506)L253 (2pth)K191 because T (delta_L) conformation "forbidden" or filtered. T0506 246 :EKALAQL 2pth 184 :TNRLHAF T0506 254 :K 2pth 192 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=27646 # 1k8kE.246.91 read from T0506.t2k.many.frag # found chain 1k8kE in template set T0506 246 :EKALAQLLK 1k8kE 92 :EKEMYTLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27647 # command:# Reading fragments from alignment file # Attempting to read fragment alignments from file T0506.t04.many.frag with CODEWEIGHT bystroff filtering # adding to alignment library if long or multiple fragments 1v4aA expands to /projects/compbio/data/pdb/1v4a.pdb.gz 1v4aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0506 read from T0506.t04.many.frag # 1v4aA.1.14 read from T0506.t04.many.frag # adding 1v4aA to template set # found chain 1v4aA in template set Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. T0506 1 :MLDVAPP 1v4aA 15 :VVERLPE T0506 9 :I 1v4aA 23 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27649 # 1wlqC.1.99 read from T0506.t04.many.frag # found chain 1wlqC in template set Warning: unaligning (T0506)P6 (1wlqC)K272 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1wlqC)S274 because Y (epsilon') conformation "forbidden" or filtered. T0506 1 :MLDVA 1wlqC 267 :NVPTF T0506 7 :P 1wlqC 273 :D T0506 9 :I 1wlqC 275 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=27652 1kkeA expands to /projects/compbio/data/pdb/1kke.pdb.gz 1kkeA:# 1kkeA.1.124 read from T0506.t04.many.frag # adding 1kkeA to template set # found chain 1kkeA in template set Warning: unaligning (T0506)D3 (1kkeA)T372 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V4 (1kkeA)G373 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0506 1 :ML 1kkeA 370 :FV T0506 5 :APP 1kkeA 374 :LLP T0506 9 :I 1kkeA 378 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27655 # 1tvgA.1.26 read from T0506.t04.many.frag # found chain 1tvgA in training set T0506 1 :MLDVAPPVI 1tvgA 17 :LATSSDEKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=27656 # 1d02A.1.100 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)M1 (1d02A)R101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L2 (1d02A)Q102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1d02A)V106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1d02A)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVA 1d02A 103 :DGW T0506 7 :P 1d02A 107 :E T0506 9 :I 1d02A 109 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=27659 # 2dpmA.1.205 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)D3 (2dpmA)S208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2dpmA)H211 because Y (epsilon') conformation "forbidden" or filtered. T0506 1 :ML 2dpmA 206 :FT T0506 4 :VA 2dpmA 209 :YT T0506 7 :PVI 2dpmA 212 :EGF Number of specific fragments extracted= 3 number of extra gaps= 2 total=27662 1skz expands to /projects/compbio/data/pdb/1skz.pdb.gz 1skz:Warning: there is no chain 1skz will retry with 1skzA # 1skz.1.53 read from T0506.t04.many.frag # adding 1skz to template set # found chain 1skz in template set T0506 1 :MLDVAPPVI 1skz 54 :RLEPMKATC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27663 # 1ursA.1.105 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)D3 (1ursA)P108 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1ursA)G112 because T (delta_L) conformation "forbidden" or filtered. T0506 1 :ML 1ursA 106 :MA T0506 4 :VAP 1ursA 109 :VPS T0506 8 :VI 1ursA 113 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27666 # 1b3aA.1.9 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)D3 (1b3aA)A13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1b3aA)R17 because E (beta_S) conformation "forbidden" or filtered. T0506 1 :ML 1b3aA 11 :CF T0506 4 :VAP 1b3aA 14 :YIA T0506 8 :VI 1b3aA 18 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27669 # 1tt7A.1.72 read from T0506.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)D3 (1tt7A)S75 because E (beta_S) conformation "forbidden" or filtered. T0506 1 :ML 1tt7A 73 :VV T0506 4 :VAPPVI 1tt7A 76 :SNDPRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27671 # 1zn6A.1.60 read from T0506.t04.many.frag # found chain 1zn6A in template set T0506 1 :MLDVAPPVI 1zn6A 61 :RWGMIPPGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27672 # 1eokA.1.15 read from T0506.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0506)P6 (1eokA)N21 because L (left) conformation "forbidden" or filtered. T0506 1 :MLDVA 1eokA 16 :ITDGR T0506 7 :PVI 1eokA 22 :PTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27674 # 1tl9A.1.68 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P6 (1tl9A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1tl9A)D100 because L (left) conformation "forbidden" or filtered. T0506 1 :MLDVA 1tl9A 94 :NPQFI T0506 8 :VI 1tl9A 101 :GA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27676 # 1o7iA.1.92 read from T0506.t04.many.frag # found chain 1o7iA in training set Warning: unaligning (T0506)D3 (1o7iA)E95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1o7iA)G100 because T (delta_L) conformation "forbidden" or filtered. T0506 1 :ML 1o7iA 93 :IA T0506 4 :VAPP 1o7iA 96 :ASED T0506 9 :I 1o7iA 101 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=27679 # 1ib2A.1.8 read from T0506.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)P6 (1ib2A)Y841 because D (zeta) conformation "forbidden" or filtered. T0506 1 :MLDVA 1ib2A 836 :FRNNR T0506 7 :PVI 1ib2A 842 :PNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27681 1tffA expands to /projects/compbio/data/pdb/1tff.pdb.gz 1tffA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tffA.1.4 read from T0506.t04.many.frag # adding 1tffA to template set # found chain 1tffA in template set Warning: unaligning (T0506)D3 because first residue in template chain is (1tffA)N7 T0506 4 :VAPPVI 1tffA 8 :LISEKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27682 # 1v54A.1.167 read from T0506.t04.many.frag # found chain 1v54A in training set T0506 1 :MLDVAPPVI 1v54A 168 :IINMKPPAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=27683 # 1rdqE.1.29 read from T0506.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0506)P6 (1rdqE)Q35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1rdqE)N36 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1rdqE)A38 because Y (epsilon') conformation "forbidden" or filtered. T0506 1 :MLDVA 1rdqE 30 :WETPS T0506 8 :V 1rdqE 37 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=27685 # 1d02A.1.62 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)P6 (1d02A)N68 because D (zeta) conformation "forbidden" or filtered. T0506 1 :MLDVA 1d02A 63 :IKEIF T0506 7 :PVI 1d02A 69 :PLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27687 1fleI expands to /projects/compbio/data/pdb/1fle.pdb.gz 1fleI:# 1fleI.1.24 read from T0506.t04.many.frag # adding 1fleI to template set # found chain 1fleI in template set Warning: unaligning (T0506)P7 (1fleI)R31 because G (3-10) conformation "forbidden" or filtered. T0506 1 :MLDVAP 1fleI 25 :MLNPPN T0506 8 :VI 1fleI 32 :CL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27689 1yk4A expands to /projects/compbio/data/pdb/1yk4.pdb.gz 1yk4A:Skipped atom 15, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 19, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 21, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 23, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 25, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 27, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 77, because occupancy 0.130 <= existing 0.610 in 1yk4A Skipped atom 78, because occupancy 0.260 <= existing 0.610 in 1yk4A Skipped atom 80, because occupancy 0.130 <= existing 0.610 in 1yk4A Skipped atom 81, because occupancy 0.260 <= existing 0.610 in 1yk4A Skipped atom 106, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 108, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 128, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 130, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 132, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 134, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 136, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 138, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 140, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 142, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 166, because occupancy 0.380 <= existing 0.620 in 1yk4A Skipped atom 323, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 325, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 327, because occupancy 0.220 <= existing 0.780 in 1yk4A Skipped atom 398, because occupancy 0.360 <= existing 0.590 in 1yk4A Skipped atom 399, because occupancy 0.060 <= existing 0.590 in 1yk4A Skipped atom 401, because occupancy 0.360 <= existing 0.590 in 1yk4A Skipped atom 402, because occupancy 0.060 <= existing 0.590 in 1yk4A Skipped atom 565, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 567, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 569, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 571, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 573, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 575, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 577, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 579, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 589, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 591, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 593, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 595, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 597, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 599, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 601, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 603, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 613, because occupancy 0.490 <= existing 0.510 in 1yk4A Skipped atom 666, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 670, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 672, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 674, because occupancy 0.340 <= existing 0.660 in 1yk4A Skipped atom 822, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 824, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 826, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 828, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 830, because occupancy 0.390 <= existing 0.610 in 1yk4A Skipped atom 843, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 847, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 849, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 851, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 853, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 855, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 857, because occupancy 0.260 <= existing 0.740 in 1yk4A Skipped atom 859, because occupancy 0.260 <= existing 0.740 in 1yk4A # 1yk4A.1.18 read from T0506.t04.many.frag # adding 1yk4A to template set # found chain 1yk4A in template set Warning: unaligning (T0506)V4 (1yk4A)G23 because T (delta_L) conformation "forbidden" or filtered. T0506 1 :MLD 1yk4A 20 :PDN T0506 5 :APPVI 1yk4A 24 :ISPGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27691 # 1zb1A.1.324 read from T0506.t04.many.frag # found chain 1zb1A in template set Warning: unaligning (T0506)D3 (1zb1A)E322 because E (beta_S) conformation "forbidden" or filtered. T0506 1 :ML 1zb1A 320 :YH T0506 4 :VAPPVI 1zb1A 323 :SVPAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27693 # 1w23A.1.122 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)V4 (1w23A)S126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1w23A)Q128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w23A)S129 because Y (epsilon') conformation "forbidden" or filtered. T0506 1 :MLD 1w23A 123 :KAN T0506 5 :A 1w23A 127 :Y T0506 8 :VI 1w23A 130 :IP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27696 1ufaA expands to /projects/compbio/data/pdb/1ufa.pdb.gz 1ufaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ufaA.1.299 read from T0506.t04.many.frag # adding 1ufaA to template set # found chain 1ufaA in template set Warning: unaligning (T0506)P6 (1ufaA)H305 because E (beta_S) conformation "forbidden" or filtered. T0506 1 :MLDVA 1ufaA 300 :HWRVT T0506 7 :PVI 1ufaA 306 :RKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27698 # 1hbnB.1.57 read from T0506.t04.many.frag # found chain 1hbnB in training set Warning: unaligning (T0506)L2 (1hbnB)A60 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A5 (1hbnB)G63 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1hbnB)G64 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1hbnB)A66 because T (delta_L) conformation "forbidden" or filtered. T0506 1 :M 1hbnB 59 :T T0506 3 :DV 1hbnB 61 :KV T0506 7 :P 1hbnB 65 :P T0506 9 :I 1hbnB 67 :C Number of specific fragments extracted= 4 number of extra gaps= 3 total=27702 1esc expands to /projects/compbio/data/pdb/1esc.pdb.gz 1esc:Warning: there is no chain 1esc will retry with 1escA # 1esc.1.127 read from T0506.t04.many.frag # adding 1esc to template set # found chain 1esc in template set Warning: unaligning (T0506)L2 (1esc)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 1 :M 1esc 128 :P T0506 3 :DVAPPVI 1esc 130 :DPVDGDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27704 # 1wraA.1.106 read from T0506.t04.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)V4 because of BadResidue code BAD_PEPTIDE in next template residue (1wraA)S137 Warning: unaligning (T0506)A5 because of BadResidue code BAD_PEPTIDE at template residue (1wraA)S137 T0506 1 :MLD 1wraA 133 :LKK T0506 6 :PPVI 1wraA 138 :DSRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27706 1yozA expands to /projects/compbio/data/pdb/1yoz.pdb.gz 1yozA:# 1yozA.1.12 read from T0506.t04.many.frag # adding 1yozA to template set # found chain 1yozA in template set Warning: unaligning (T0506)P6 (1yozA)R26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1yozA)G27 because L (left) conformation "forbidden" or filtered. T0506 1 :MLDVA 1yozA 21 :MGEII T0506 8 :VI 1yozA 28 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27708 # 1rjuV.1.18 read from T0506.t04.many.frag # found chain 1rjuV in training set Warning: unaligning (T0506)M1 (1rjuV)S19 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1rjuV)G25 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1rjuV)N27 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVAP 1rjuV 20 :CSCPT T0506 8 :V 1rjuV 26 :C Number of specific fragments extracted= 2 number of extra gaps= 3 total=27710 # 1cnv.1.39 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)M1 (1cnv)G40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1cnv)K45 because D (zeta) conformation "forbidden" or filtered. T0506 2 :LDVA 1cnv 41 :CEIR T0506 7 :PVI 1cnv 46 :PEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27712 # 1v4aA.2.15 read from T0506.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0506)V4 (1v4aA)R18 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. T0506 2 :LD 1v4aA 16 :VE T0506 5 :APP 1v4aA 19 :LPE T0506 9 :IT 1v4aA 23 :LA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27715 # 1kkeA.2.125 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)D3 (1kkeA)T372 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0506 2 :L 1kkeA 371 :V T0506 4 :VAPP 1kkeA 373 :GLLP T0506 9 :IT 1kkeA 378 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27718 # 1tl9A.2.69 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P6 (1tl9A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1tl9A)D100 because L (left) conformation "forbidden" or filtered. T0506 2 :LDVA 1tl9A 95 :PQFI T0506 8 :VIT 1tl9A 101 :GAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27720 # 1d02A.2.101 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)L2 (1d02A)Q102 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1d02A)V106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1d02A)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVA 1d02A 103 :DGW T0506 7 :P 1d02A 107 :E T0506 9 :IT 1d02A 109 :KD Number of specific fragments extracted= 3 number of extra gaps= 3 total=27723 # 1skz.2.54 read from T0506.t04.many.frag # found chain 1skz in template set T0506 2 :LDVAPPVIT 1skz 55 :LEPMKATCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27724 # 1wlqC.2.100 read from T0506.t04.many.frag # found chain 1wlqC in template set Warning: unaligning (T0506)P6 (1wlqC)K272 because E (beta_S) conformation "forbidden" or filtered. T0506 2 :LDVA 1wlqC 268 :VPTF T0506 7 :PVIT 1wlqC 273 :DSIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27726 # 1v04A.2.99 read from T0506.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0506)P6 (1v04A)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1v04A)N105 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LDVA 1v04A 100 :LEII T0506 8 :VIT 1v04A 106 :TLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27728 # 1ursA.2.106 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)P7 (1ursA)G112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T10 (1ursA)N115 because D (zeta) conformation "forbidden" or filtered. T0506 2 :LDVAP 1ursA 107 :APVPS T0506 8 :VI 1ursA 113 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=27730 # 1zn6A.2.61 read from T0506.t04.many.frag # found chain 1zn6A in template set T0506 2 :LDVAPPVIT 1zn6A 62 :WGMIPPGTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27731 # 1tvgA.2.27 read from T0506.t04.many.frag # found chain 1tvgA in training set Warning: unaligning (T0506)A5 (1tvgA)S21 because D (zeta) conformation "forbidden" or filtered. T0506 2 :LDV 1tvgA 18 :ATS T0506 6 :PPVIT 1tvgA 22 :DEKHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27733 # 1b3aA.2.10 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)D3 (1b3aA)A13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1b3aA)R17 because E (beta_S) conformation "forbidden" or filtered. T0506 2 :L 1b3aA 12 :F T0506 4 :VAP 1b3aA 14 :YIA T0506 8 :VIT 1b3aA 18 :PLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27736 # 1ib2A.2.9 read from T0506.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)V4 (1ib2A)N839 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1ib2A)Y841 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1ib2A)N843 because G (3-10) conformation "forbidden" or filtered. T0506 2 :LD 1ib2A 837 :RN T0506 5 :A 1ib2A 840 :R T0506 7 :P 1ib2A 842 :P T0506 9 :IT 1ib2A 844 :LQ Number of specific fragments extracted= 4 number of extra gaps= 3 total=27740 # 1oygA.2.34 read from T0506.t04.many.frag # found chain 1oygA in training set T0506 2 :LDVAPPVIT 1oygA 61 :EKYQVPEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27741 # 2dpmA.2.206 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)P6 (2dpmA)H211 because Y (epsilon') conformation "forbidden" or filtered. T0506 2 :LDVA 2dpmA 207 :TSYT T0506 7 :PVIT 2dpmA 212 :EGFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27743 # 1yk4A.2.19 read from T0506.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0506)V8 (1yk4A)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :LDVAPP 1yk4A 21 :DNGISP T0506 9 :IT 1yk4A 28 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27745 # 1tffA.2.5 read from T0506.t04.many.frag # found chain 1tffA in template set Warning: unaligning (T0506)D3 because first residue in template chain is (1tffA)N7 T0506 4 :VAPPVIT 1tffA 8 :LISEKCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27746 # 1tt7A.2.73 read from T0506.t04.many.frag # found chain 1tt7A in template set T0506 2 :LDVAPPVIT 1tt7A 74 :VSSNDPRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27747 # 1yozA.2.13 read from T0506.t04.many.frag # found chain 1yozA in template set Warning: unaligning (T0506)P6 (1yozA)R26 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1yozA)G27 because L (left) conformation "forbidden" or filtered. T0506 2 :LDVA 1yozA 22 :GEII T0506 8 :VIT 1yozA 28 :EKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27749 # 1rdqE.2.30 read from T0506.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0506)D3 (1rdqE)T32 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1rdqE)Q35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1rdqE)N36 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1rdqE)T37 because G (3-10) conformation "forbidden" or filtered. T0506 2 :L 1rdqE 31 :E T0506 4 :VA 1rdqE 33 :PS T0506 9 :IT 1rdqE 38 :AQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=27752 # 1eokA.2.16 read from T0506.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0506)V4 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1eokA)N21 because L (left) conformation "forbidden" or filtered. T0506 2 :LD 1eokA 17 :TD T0506 5 :A 1eokA 20 :R T0506 7 :PVIT 1eokA 22 :PTFK Number of specific fragments extracted= 3 number of extra gaps= 2 total=27755 # 1o7iA.2.93 read from T0506.t04.many.frag # found chain 1o7iA in training set Warning: unaligning (T0506)D3 (1o7iA)E95 because P (beta_P) conformation "forbidden" or filtered. T0506 2 :L 1o7iA 94 :A T0506 4 :VAPPVIT 1o7iA 96 :ASEDGFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27757 # 1ufaA.2.300 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)P6 (1ufaA)H305 because E (beta_S) conformation "forbidden" or filtered. T0506 2 :LDVA 1ufaA 301 :WRVT T0506 7 :PVIT 1ufaA 306 :RKAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27759 # 1xszA.2.145 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 2 :LDVAPPVIT 1xszA 144 :TDLHNPSIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27760 # 1v54A.2.168 read from T0506.t04.many.frag # found chain 1v54A in training set T0506 2 :LDVAPPVIT 1v54A 169 :INMKPPAMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27761 # 1w23A.2.123 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)V4 (1w23A)S126 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A5 (1w23A)Y127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1w23A)Q128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w23A)S129 because Y (epsilon') conformation "forbidden" or filtered. T0506 2 :LD 1w23A 124 :AN T0506 8 :VIT 1w23A 130 :IPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27763 # 1mixA.2.58 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)P7 (1mixA)G258 because T (delta_L) conformation "forbidden" or filtered. T0506 2 :LDVAP 1mixA 253 :QKHKP T0506 8 :VIT 1mixA 259 :FLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27765 # 1iicA.2.22 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)D3 (1iicA)G57 because Y (epsilon') conformation "forbidden" or filtered. T0506 2 :L 1iicA 56 :E T0506 4 :VAPPVIT 1iicA 58 :PIDKPKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27767 # 1iuaA.2.28 read from T0506.t04.many.frag # found chain 1iuaA in training set T0506 2 :LDVAPPVIT 1iuaA 29 :VAAARPGLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27768 # 1zb1A.2.325 read from T0506.t04.many.frag # found chain 1zb1A in template set Warning: unaligning (T0506)A5 (1zb1A)V324 because D (zeta) conformation "forbidden" or filtered. T0506 2 :LDV 1zb1A 321 :HES T0506 6 :PPVIT 1zb1A 325 :PAVVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27770 # 1d02A.2.63 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)P6 (1d02A)N68 because D (zeta) conformation "forbidden" or filtered. T0506 2 :LDVA 1d02A 64 :KEIF T0506 7 :PVIT 1d02A 69 :PLID Number of specific fragments extracted= 2 number of extra gaps= 1 total=27772 # 1kkeA.3.126 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0506 3 :DVAPP 1kkeA 372 :TGLLP T0506 9 :ITP 1kkeA 378 :LLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27774 # 1v4aA.3.16 read from T0506.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0506)V4 (1v4aA)R18 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. T0506 3 :D 1v4aA 17 :E T0506 5 :APP 1v4aA 19 :LPE T0506 9 :ITP 1v4aA 23 :LAE Number of specific fragments extracted= 3 number of extra gaps= 2 total=27777 # 1tl9A.3.70 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P6 (1tl9A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1tl9A)D100 because L (left) conformation "forbidden" or filtered. T0506 3 :DVA 1tl9A 96 :QFI T0506 8 :VITP 1tl9A 101 :GATR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27779 # 1skz.3.55 read from T0506.t04.many.frag # found chain 1skz in template set T0506 3 :DVAPPVITP 1skz 56 :EPMKATCDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27780 # 1oygA.3.35 read from T0506.t04.many.frag # found chain 1oygA in training set T0506 3 :DVAPPVITP 1oygA 62 :KYQVPEFDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27781 # 1iicA.3.23 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)D3 (1iicA)G57 because Y (epsilon') conformation "forbidden" or filtered. T0506 4 :VAPPVITP 1iicA 58 :PIDKPKTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27782 # 1yk4A.3.20 read from T0506.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0506)V8 (1yk4A)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVAPP 1yk4A 22 :NGISP T0506 9 :ITP 1yk4A 28 :TKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27784 # 1ufaA.3.301 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)A5 (1ufaA)T304 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1ufaA)H305 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :DV 1ufaA 302 :RV T0506 7 :PVITP 1ufaA 306 :RKADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27786 # 1ursA.3.107 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)P7 (1ursA)G112 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVAP 1ursA 108 :PVPS T0506 8 :VITP 1ursA 113 :VLNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27788 # 1d02A.3.102 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)P6 (1d02A)V106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1d02A)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVA 1d02A 103 :DGW T0506 7 :P 1d02A 107 :E T0506 9 :ITP 1d02A 109 :KDP Number of specific fragments extracted= 3 number of extra gaps= 2 total=27791 # 1wlqC.3.101 read from T0506.t04.many.frag # found chain 1wlqC in template set Warning: unaligning (T0506)P6 (1wlqC)K272 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :DVA 1wlqC 269 :PTF T0506 7 :PVITP 1wlqC 273 :DSIKR Number of specific fragments extracted= 2 number of extra gaps= 1 total=27793 # 1zn6A.3.62 read from T0506.t04.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)D3 (1zn6A)G63 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A5 (1zn6A)I65 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :V 1zn6A 64 :M T0506 6 :PPVITP 1zn6A 66 :PPGTRP Number of specific fragments extracted= 2 number of extra gaps= 2 total=27795 2bayA expands to /projects/compbio/data/pdb/2bay.pdb.gz 2bayA:Skipped atom 52, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 54, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 56, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 58, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 78, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 80, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 82, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 2bayA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 2bayA # 2bayA.3.41 read from T0506.t04.many.frag # adding 2bayA to template set # found chain 2bayA in template set Warning: unaligning (T0506)A5 (2bayA)T41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (2bayA)N42 because L (left) conformation "forbidden" or filtered. T0506 3 :DV 2bayA 39 :PI T0506 7 :PVITP 2bayA 43 :EPLSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27797 # 1b3aA.3.11 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)D3 (1b3aA)A13 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1b3aA)R17 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VAP 1b3aA 14 :YIA T0506 8 :VITP 1b3aA 18 :PLPR Number of specific fragments extracted= 2 number of extra gaps= 2 total=27799 # 1tvgA.3.28 read from T0506.t04.many.frag # found chain 1tvgA in training set Warning: unaligning (T0506)A5 (1tvgA)S21 because D (zeta) conformation "forbidden" or filtered. T0506 3 :DV 1tvgA 19 :TS T0506 6 :PPVITP 1tvgA 22 :DEKHPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27801 # 1v04A.3.100 read from T0506.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0506)D3 (1v04A)E101 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1v04A)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1v04A)N105 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VA 1v04A 102 :II T0506 8 :VITP 1v04A 106 :TLDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27803 1jmuB expands to /projects/compbio/data/pdb/1jmu.pdb.gz 1jmuB:# 1jmuB.3.277 read from T0506.t04.many.frag # adding 1jmuB to template set # found chain 1jmuB in template set Warning: unaligning (T0506)V4 (1jmuB)Y321 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A5 (1jmuB)N322 because D (zeta) conformation "forbidden" or filtered. T0506 3 :D 1jmuB 320 :D T0506 6 :PPVITP 1jmuB 323 :VRTLKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27805 # 1lvmA.3.0 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)D3 because first residue in template chain is (1lvmA)G-8 Warning: unaligning (T0506)P7 (1lvmA)H-4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1lvmA)H-3 because L (left) conformation "forbidden" or filtered. T0506 4 :VAP 1lvmA -7 :HHH T0506 9 :ITP 1lvmA -2 :HHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27807 # 1rdqE.3.31 read from T0506.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0506)P6 (1rdqE)Q35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1rdqE)N36 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1rdqE)T37 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVA 1rdqE 32 :TPS T0506 9 :ITP 1rdqE 38 :AQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27809 # 1ib2A.3.10 read from T0506.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)P6 (1ib2A)Y841 because D (zeta) conformation "forbidden" or filtered. T0506 3 :DVA 1ib2A 838 :NNR T0506 7 :PVITP 1ib2A 842 :PNLQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27811 # 1z6mA.3.2 read from T0506.t04.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6mA)D2 Warning: unaligning (T0506)A5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6mA)D2 T0506 3 :D 1z6mA 0 :A T0506 6 :PPVITP 1z6mA 3 :ISVIDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27813 # 2dpmA.3.207 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)P6 (2dpmA)H211 because Y (epsilon') conformation "forbidden" or filtered. T0506 3 :DVA 2dpmA 208 :SYT T0506 7 :PVITP 2dpmA 212 :EGFSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27815 # 1eokA.3.17 read from T0506.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0506)V4 (1eokA)G19 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1eokA)N21 because L (left) conformation "forbidden" or filtered. T0506 3 :D 1eokA 18 :D T0506 5 :A 1eokA 20 :R T0506 7 :PVITP 1eokA 22 :PTFKL Number of specific fragments extracted= 3 number of extra gaps= 2 total=27818 # 1tffA.3.6 read from T0506.t04.many.frag # found chain 1tffA in template set Warning: unaligning (T0506)D3 because first residue in template chain is (1tffA)N7 T0506 4 :VAPPVITP 1tffA 8 :LISEKCDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27819 # 1mixA.3.59 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)P7 (1mixA)G258 because T (delta_L) conformation "forbidden" or filtered. T0506 3 :DVAP 1mixA 254 :KHKP T0506 8 :VITP 1mixA 259 :FLEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27821 # 1w23A.3.124 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)A5 (1w23A)Y127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1w23A)Q128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w23A)S129 because Y (epsilon') conformation "forbidden" or filtered. T0506 3 :DV 1w23A 125 :NS T0506 8 :VITP 1w23A 130 :IPDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=27823 # 1iuaA.3.29 read from T0506.t04.many.frag # found chain 1iuaA in training set Warning: unaligning (T0506)A5 (1iuaA)A32 because L (left) conformation "forbidden" or filtered. T0506 3 :DV 1iuaA 30 :AA T0506 6 :PPVITP 1iuaA 33 :RPGLPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=27825 # 1fl0A.3.41 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)P7 (1fl0A)N195 because G (3-10) conformation "forbidden" or filtered. T0506 3 :DVAP 1fl0A 191 :SGLV T0506 8 :VITP 1fl0A 196 :HVPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27827 # 1xszA.3.146 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 3 :DVAPPVITP 1xszA 145 :DLHNPSIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27828 # 1wraA.3.108 read from T0506.t04.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)V4 because of BadResidue code BAD_PEPTIDE in next template residue (1wraA)S137 Warning: unaligning (T0506)A5 because of BadResidue code BAD_PEPTIDE at template residue (1wraA)S137 Warning: unaligning (T0506)P11 (1wraA)N143 because E (beta_S) conformation "forbidden" or filtered. T0506 3 :D 1wraA 135 :K T0506 6 :PPVIT 1wraA 138 :DSRIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27830 # 1v4aA.4.17 read from T0506.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. T0506 4 :VAPP 1v4aA 18 :RLPE T0506 9 :ITPR 1v4aA 23 :LAEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27832 # 1iicA.4.24 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 4 :VAPPVITPR 1iicA 58 :PIDKPKTPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27833 # 1kkeA.4.127 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)A5 (1kkeA)L374 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0506 4 :V 1kkeA 373 :G T0506 6 :PP 1kkeA 375 :LP T0506 9 :ITPR 1kkeA 378 :LLTG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27836 # 1tl9A.4.71 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P6 (1tl9A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1tl9A)D100 because L (left) conformation "forbidden" or filtered. T0506 4 :VA 1tl9A 97 :FI T0506 8 :VITPR 1tl9A 101 :GATRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=27838 # 1oygA.4.36 read from T0506.t04.many.frag # found chain 1oygA in training set T0506 4 :VAPPVITPR 1oygA 63 :YQVPEFDSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27839 # 1yk4A.4.21 read from T0506.t04.many.frag # found chain 1yk4A in template set T0506 4 :VAPPVITPR 1yk4A 23 :GISPGTKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27840 # 1ursA.4.108 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)P7 (1ursA)G112 because T (delta_L) conformation "forbidden" or filtered. T0506 4 :VAP 1ursA 109 :VPS T0506 8 :VITPR 1ursA 113 :VLNTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=27842 # 1z6mA.4.3 read from T0506.t04.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)V4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6mA)D2 Warning: unaligning (T0506)A5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6mA)D2 T0506 6 :PPVITPR 1z6mA 3 :ISVIDAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=27843 # 1skz.4.56 read from T0506.t04.many.frag # found chain 1skz in template set T0506 4 :VAPPVITPR 1skz 57 :PMKATCDIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27844 # 2bayA.4.42 read from T0506.t04.many.frag # found chain 2bayA in template set Warning: unaligning (T0506)P6 (2bayA)N42 because L (left) conformation "forbidden" or filtered. T0506 4 :VA 2bayA 40 :IT T0506 7 :PVITPR 2bayA 43 :EPLSIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27846 # 1zn6A.4.63 read from T0506.t04.many.frag # found chain 1zn6A in template set T0506 4 :VAPPVITPR 1zn6A 64 :MIPPGTRPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27847 # 1b3aA.4.12 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)P7 (1b3aA)R17 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VAP 1b3aA 14 :YIA T0506 8 :VITPR 1b3aA 18 :PLPRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27849 # 1ufaA.4.302 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)A5 (1ufaA)T304 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1ufaA)H305 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :V 1ufaA 303 :V T0506 7 :PVITPR 1ufaA 306 :RKADLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27851 # 1lvmA.4.1 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)P7 (1lvmA)H-4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1lvmA)H-3 because L (left) conformation "forbidden" or filtered. T0506 4 :VAP 1lvmA -7 :HHH T0506 9 :ITPR 1lvmA -2 :HHGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27853 # 1tvgA.4.29 read from T0506.t04.many.frag # found chain 1tvgA in training set Warning: unaligning (T0506)A5 (1tvgA)S21 because D (zeta) conformation "forbidden" or filtered. T0506 4 :V 1tvgA 20 :S T0506 6 :PPVITPR 1tvgA 22 :DEKHPPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27855 # 1d02A.4.103 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)P6 (1d02A)V106 because Y (epsilon') conformation "forbidden" or filtered. T0506 4 :VA 1d02A 104 :GW T0506 7 :PVITPR 1d02A 107 :EGKDPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27857 # 1fl0A.4.42 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)P7 (1fl0A)N195 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1fl0A)H196 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VAP 1fl0A 192 :GLV T0506 9 :ITPR 1fl0A 197 :VPLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27859 # 1jmuB.4.278 read from T0506.t04.many.frag # found chain 1jmuB in template set Warning: unaligning (T0506)A5 (1jmuB)N322 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1jmuB)D329 because G (3-10) conformation "forbidden" or filtered. T0506 4 :V 1jmuB 321 :Y T0506 6 :PPVITP 1jmuB 323 :VRTLKI Number of specific fragments extracted= 2 number of extra gaps= 2 total=27861 # 1ijyA.4.102 read from T0506.t04.many.frag # found chain 1ijyA in training set T0506 4 :VAPPVITPR 1ijyA 101 :AWPDRMRCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27862 # 1ib2A.4.11 read from T0506.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)P6 (1ib2A)Y841 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1ib2A)N843 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VA 1ib2A 839 :NR T0506 7 :P 1ib2A 842 :P T0506 9 :ITPR 1ib2A 844 :LQLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=27865 1t34H expands to /projects/compbio/data/pdb/1t34.pdb.gz 1t34H:Skipped atom 6668, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6670, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6672, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6674, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6676, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6678, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6680, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6682, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6684, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6686, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6688, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6690, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6692, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6694, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6696, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6698, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6700, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6702, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6704, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6706, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6708, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6710, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6712, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6714, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6716, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6718, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6720, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6722, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6724, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6726, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6728, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6730, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6732, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6734, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6736, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6738, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6740, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6742, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6744, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6746, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6748, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6750, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6752, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6754, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6756, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6758, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6760, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6762, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6764, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6766, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6768, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6770, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6772, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6774, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6776, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6778, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6780, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6782, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6784, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6786, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6788, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6790, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6792, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6794, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6796, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6798, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6800, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6802, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6804, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6806, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6808, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6810, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6812, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6814, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6816, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6818, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6820, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6822, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6824, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6826, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6828, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6830, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6832, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6834, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6836, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6838, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6840, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6842, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6844, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6846, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6848, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6850, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6852, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6854, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6856, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6858, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6860, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6862, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6864, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6866, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6868, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6870, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6872, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6874, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6876, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6878, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6880, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6882, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6884, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6886, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6888, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6890, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6892, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6894, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6896, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6898, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6900, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6902, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6904, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6906, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6908, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6910, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6912, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6914, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6916, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6918, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6920, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6922, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6924, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6926, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6928, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6930, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6932, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6934, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6936, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6938, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6940, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6942, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6944, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6946, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6948, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6950, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6952, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6954, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6956, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6958, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6960, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6962, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6964, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6966, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6968, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6970, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6972, because occupancy 0.500 <= existing 0.500 in 1t34H Skipped atom 6974, because occupancy 0.500 <= existing 0.500 in 1t34H # 1t34H.4.0 read from T0506.t04.many.frag # adding 1t34H to template set # found chain 1t34H in template set Warning: unaligning (T0506)V4 because first residue in template chain is (1t34H)C7 Warning: unaligning (T0506)P6 (1t34H)G9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R12 (1t34H)I15 because L (left) conformation "forbidden" or filtered. T0506 5 :A 1t34H 8 :F T0506 7 :PVITP 1t34H 10 :GRIDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=27867 # 1s4nA.4.85 read from T0506.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0506)P6 (1s4nA)F182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1s4nA)G183 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VA 1s4nA 180 :VK T0506 8 :VITPR 1s4nA 184 :ILPKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27869 # 2bmoA.4.1 read from T0506.t04.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)A5 because first residue in template chain is (2bmoA)Y3 Warning: unaligning (T0506)P7 (2bmoA)N5 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 2bmoA 4 :Q T0506 8 :VITPR 2bmoA 6 :LVSEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27871 # 1wlqC.4.102 read from T0506.t04.many.frag # found chain 1wlqC in template set Warning: unaligning (T0506)P6 (1wlqC)K272 because E (beta_S) conformation "forbidden" or filtered. T0506 4 :VA 1wlqC 270 :TF T0506 7 :PVITPR 1wlqC 273 :DSIKRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27873 # 1mixA.4.60 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)P7 (1mixA)G258 because T (delta_L) conformation "forbidden" or filtered. T0506 4 :VAP 1mixA 255 :HKP T0506 8 :VITPR 1mixA 259 :FLELK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27875 # 1v04A.4.101 read from T0506.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0506)P6 (1v04A)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1v04A)N105 because G (3-10) conformation "forbidden" or filtered. T0506 4 :VA 1v04A 102 :II T0506 8 :VITPR 1v04A 106 :TLDIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=27877 # 1rdqE.4.32 read from T0506.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0506)P6 (1rdqE)Q35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1rdqE)N36 because L (left) conformation "forbidden" or filtered. T0506 4 :VA 1rdqE 33 :PS T0506 8 :VITPR 1rdqE 37 :TAQLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27879 # 2dpmA.4.208 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)P6 (2dpmA)H211 because Y (epsilon') conformation "forbidden" or filtered. T0506 4 :VA 2dpmA 209 :YT T0506 7 :PVITPR 2dpmA 212 :EGFSFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27881 # 1eokA.4.18 read from T0506.t04.many.frag # found chain 1eokA in training set Warning: unaligning (T0506)A5 (1eokA)R20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1eokA)N21 because L (left) conformation "forbidden" or filtered. T0506 4 :V 1eokA 19 :G T0506 7 :PVITPR 1eokA 22 :PTFKLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=27883 # 1tca.4.247 read from T0506.t04.many.frag # found chain 1tca in training set T0506 4 :VAPPVITPR 1tca 248 :ARSADYGIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=27884 # 1iicA.5.25 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)G13 (1iicA)D67 because G (3-10) conformation "forbidden" or filtered. T0506 5 :APPVITPR 1iicA 59 :IDKPKTPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=27885 # 1v4aA.5.18 read from T0506.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0506)A5 (1v4aA)L19 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. T0506 6 :PP 1v4aA 20 :PE T0506 9 :ITPRG 1v4aA 23 :LAEES Number of specific fragments extracted= 2 number of extra gaps= 2 total=27887 # 1yk4A.5.22 read from T0506.t04.many.frag # found chain 1yk4A in template set T0506 5 :APPVITPRG 1yk4A 24 :ISPGTKFED Number of specific fragments extracted= 1 number of extra gaps= 0 total=27888 # 1kkeA.5.128 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. T0506 5 :APP 1kkeA 374 :LLP T0506 9 :ITPRG 1kkeA 378 :LLTGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27890 # 1tl9A.5.72 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P6 (1tl9A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1tl9A)D100 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1tl9A)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1tl9A)D106 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1tl9A 98 :I T0506 9 :ITPR 1tl9A 102 :ATRT Number of specific fragments extracted= 2 number of extra gaps= 2 total=27892 # 2bayA.5.43 read from T0506.t04.many.frag # found chain 2bayA in template set Warning: unaligning (T0506)P6 (2bayA)N42 because L (left) conformation "forbidden" or filtered. T0506 5 :A 2bayA 41 :T T0506 7 :PVITPRG 2bayA 43 :EPLSIEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27894 # 1oygA.5.37 read from T0506.t04.many.frag # found chain 1oygA in training set T0506 5 :APPVITPRG 1oygA 64 :QVPEFDSST Number of specific fragments extracted= 1 number of extra gaps= 0 total=27895 # 1skz.5.57 read from T0506.t04.many.frag # found chain 1skz in template set T0506 5 :APPVITPRG 1skz 58 :MKATCDISE Number of specific fragments extracted= 1 number of extra gaps= 0 total=27896 # 1lvmA.5.2 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)P7 (1lvmA)H-4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1lvmA)H-3 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1lvmA)S3 because G (3-10) conformation "forbidden" or filtered. T0506 5 :AP 1lvmA -6 :HH T0506 9 :ITPR 1lvmA -2 :HHGE Number of specific fragments extracted= 2 number of extra gaps= 2 total=27898 # 1crzA.5.39 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)P6 (1crzA)F47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1crzA)N48 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1crzA)R54 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1crzA 46 :K T0506 8 :VITPR 1crzA 49 :PLDRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27900 # 1ufaA.5.303 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)P6 (1ufaA)H305 because E (beta_S) conformation "forbidden" or filtered. T0506 5 :A 1ufaA 304 :T T0506 7 :PVITPRG 1ufaA 306 :RKADLAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27902 # 1b3aA.5.13 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)P7 (1b3aA)R17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1b3aA)H23 because G (3-10) conformation "forbidden" or filtered. T0506 5 :AP 1b3aA 15 :IA T0506 8 :VITPR 1b3aA 18 :PLPRA Number of specific fragments extracted= 2 number of extra gaps= 2 total=27904 # 1zn6A.5.64 read from T0506.t04.many.frag # found chain 1zn6A in template set T0506 5 :APPVITPRG 1zn6A 65 :IPPGTRPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=27905 1reqB expands to /projects/compbio/data/pdb/1req.pdb.gz 1reqB:# 1reqB.5.70 read from T0506.t04.many.frag # adding 1reqB to template set # found chain 1reqB in template set T0506 5 :APPVITPRG 1reqB 72 :IVPMYRPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27906 # 1ursA.5.109 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)P7 (1ursA)G112 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1ursA)L118 because G (3-10) conformation "forbidden" or filtered. T0506 5 :AP 1ursA 110 :PS T0506 8 :VITPR 1ursA 113 :VLNTG Number of specific fragments extracted= 2 number of extra gaps= 2 total=27908 # 1s4nA.5.86 read from T0506.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0506)A5 (1s4nA)K181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P6 (1s4nA)F182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1s4nA)G183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1s4nA)H189 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1s4nA 184 :ILPKE Number of specific fragments extracted= 1 number of extra gaps= 2 total=27909 # 1ijyA.5.103 read from T0506.t04.many.frag # found chain 1ijyA in training set T0506 5 :APPVITPRG 1ijyA 102 :WPDRMRCDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=27910 # 1fl0A.5.43 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)P7 (1fl0A)N195 because G (3-10) conformation "forbidden" or filtered. T0506 5 :AP 1fl0A 193 :LV T0506 8 :VITPRG 1fl0A 196 :HVPLEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=27912 # 1z6mA.5.4 read from T0506.t04.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)A5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6mA)D2 Warning: unaligning (T0506)G13 (1z6mA)K10 because G (3-10) conformation "forbidden" or filtered. T0506 6 :PPVITPR 1z6mA 3 :ISVIDAT Number of specific fragments extracted= 1 number of extra gaps= 2 total=27913 # 1l8aA.5.58 read from T0506.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)P6 (1l8aA)I60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1l8aA)E67 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1l8aA 59 :Y T0506 7 :PVITPR 1l8aA 61 :NTIPVE Number of specific fragments extracted= 2 number of extra gaps= 2 total=27915 # 1w23A.5.126 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)P6 (1w23A)Q128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w23A)S129 because Y (epsilon') conformation "forbidden" or filtered. T0506 5 :A 1w23A 127 :Y T0506 8 :VITPRG 1w23A 130 :IPDFSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27917 # 1tvgA.5.30 read from T0506.t04.many.frag # found chain 1tvgA in training set T0506 5 :APPVITPRG 1tvgA 21 :SDEKHPPEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=27918 # 1t34H.5.1 read from T0506.t04.many.frag # found chain 1t34H in template set Warning: unaligning (T0506)P6 (1t34H)G9 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1t34H)R11 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1t34H)I12 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 1t34H 8 :F T0506 7 :P 1t34H 10 :G T0506 10 :TPRG 1t34H 13 :DRIG Number of specific fragments extracted= 3 number of extra gaps= 2 total=27921 # 2blkA.5.5 read from T0506.t04.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)P6 (2blkA)T7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2blkA)N8 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (2blkA)M14 because G (3-10) conformation "forbidden" or filtered. T0506 5 :A 2blkA 6 :L T0506 8 :VITPR 2blkA 9 :AFSIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=27923 # 1ib2A.5.12 read from T0506.t04.many.frag # found chain 1ib2A in template set Warning: unaligning (T0506)P6 (1ib2A)Y841 because D (zeta) conformation "forbidden" or filtered. T0506 5 :A 1ib2A 840 :R T0506 7 :PVITPRG 1ib2A 842 :PNLQLRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=27925 # 1d02A.5.104 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)P6 (1d02A)V106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1d02A)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 5 :A 1d02A 105 :W T0506 7 :P 1d02A 107 :E T0506 9 :ITPRG 1d02A 109 :KDPSA Number of specific fragments extracted= 3 number of extra gaps= 2 total=27928 # 1tca.5.248 read from T0506.t04.many.frag # found chain 1tca in training set T0506 5 :APPVITPRG 1tca 249 :RSADYGITD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27929 2d28C expands to /projects/compbio/data/pdb/2d28.pdb.gz 2d28C:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2d28C.5.62 read from T0506.t04.many.frag # adding 2d28C to template set # found chain 2d28C in template set Warning: unaligning (T0506)A5 (2d28C)G63 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (2d28C)Q71 because G (3-10) conformation "forbidden" or filtered. T0506 6 :PPVITPR 2d28C 64 :LPLVDAR Number of specific fragments extracted= 1 number of extra gaps= 2 total=27930 # 2dpmA.5.209 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)P6 (2dpmA)H211 because Y (epsilon') conformation "forbidden" or filtered. T0506 5 :A 2dpmA 210 :T T0506 7 :PVITPRG 2dpmA 212 :EGFSFAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=27932 1pgl1 expands to /projects/compbio/data/pdb/1pgl.pdb.gz 1pgl1:# 1pgl1.5.77 read from T0506.t04.many.frag # adding 1pgl1 to template set # found chain 1pgl1 in template set T0506 5 :APPVITPRG 1pgl1 78 :GNAAVKRSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=27933 # 1iicA.6.26 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)G13 (1iicA)D67 because G (3-10) conformation "forbidden" or filtered. T0506 6 :PPVITPR 1iicA 60 :DKPKTPE T0506 14 :T 1iicA 68 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=27935 # 1crzA.6.40 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)P6 (1crzA)F47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1crzA)N48 because D (zeta) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1crzA 49 :PLDRARL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27936 # 1v4aA.6.19 read from T0506.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. T0506 6 :PP 1v4aA 20 :PE T0506 9 :ITPRGT 1v4aA 23 :LAEESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27938 # 2bayA.6.44 read from T0506.t04.many.frag # found chain 2bayA in template set Warning: unaligning (T0506)P6 (2bayA)N42 because L (left) conformation "forbidden" or filtered. T0506 7 :PVITPRGT 2bayA 43 :EPLSIEEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=27939 # 1reqB.6.71 read from T0506.t04.many.frag # found chain 1reqB in template set T0506 6 :PPVITPRGT 1reqB 73 :VPMYRPKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=27940 # 1lvmA.6.3 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)P7 (1lvmA)H-4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1lvmA)H-3 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1lvmA)S3 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 1lvmA -5 :H T0506 9 :ITPR 1lvmA -2 :HHGE T0506 14 :T 1lvmA 4 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=27943 # 1tl9A.6.73 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P6 (1tl9A)V99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1tl9A)D100 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1tl9A)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1tl9A)D106 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1tl9A 102 :ATRT T0506 14 :T 1tl9A 107 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=27945 # 1kkeA.6.129 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1kkeA)T383 because G (3-10) conformation "forbidden" or filtered. T0506 6 :PP 1kkeA 375 :LP T0506 9 :ITPRG 1kkeA 378 :LLTGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=27947 # 1skz.6.58 read from T0506.t04.many.frag # found chain 1skz in template set T0506 6 :PPVITPRGT 1skz 59 :KATCDISEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27948 # 1yk4A.6.23 read from T0506.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0506)V8 (1yk4A)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 6 :PP 1yk4A 25 :SP T0506 9 :ITPRGT 1yk4A 28 :TKFEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=27950 # 1b3aA.6.14 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)P7 (1b3aA)R17 because E (beta_S) conformation "forbidden" or filtered. T0506 6 :P 1b3aA 16 :A T0506 8 :VITPRGT 1b3aA 18 :PLPRAHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=27952 # 1s4nA.6.87 read from T0506.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0506)P6 (1s4nA)F182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1s4nA)G183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1s4nA)W190 because D (zeta) conformation "forbidden" or filtered. T0506 8 :VITPRG 1s4nA 184 :ILPKEH Number of specific fragments extracted= 1 number of extra gaps= 2 total=27953 1vr0A expands to /projects/compbio/data/pdb/1vr0.pdb.gz 1vr0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vr0A.6.20 read from T0506.t04.many.frag # adding 1vr0A to template set # found chain 1vr0A in template set Warning: unaligning (T0506)P7 (1vr0A)D10 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 1vr0A 9 :A T0506 8 :VITPRGT 1vr0A 11 :DIKEEKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=27955 # 2d28C.6.63 read from T0506.t04.many.frag # found chain 2d28C in template set T0506 6 :PPVITPRGT 2d28C 64 :LPLVDARQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27956 # 1oygA.6.38 read from T0506.t04.many.frag # found chain 1oygA in training set T0506 6 :PPVITPRGT 1oygA 65 :VPEFDSSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=27957 # 1ufaA.6.304 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)P6 (1ufaA)H305 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1ufaA)E312 because G (3-10) conformation "forbidden" or filtered. T0506 7 :PVITPR 1ufaA 306 :RKADLA T0506 14 :T 1ufaA 313 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=27959 # 1ijyA.6.104 read from T0506.t04.many.frag # found chain 1ijyA in training set T0506 6 :PPVITPRGT 1ijyA 103 :PDRMRCDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=27960 # 1l8aA.6.59 read from T0506.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)P6 (1l8aA)I60 because Y (epsilon') conformation "forbidden" or filtered. T0506 7 :PVITPRGT 1l8aA 61 :NTIPVEEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=27961 # 1ursA.6.110 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)P7 (1ursA)G112 because T (delta_L) conformation "forbidden" or filtered. T0506 6 :P 1ursA 111 :S T0506 8 :VITPRGT 1ursA 113 :VLNTGLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=27963 # 1zn6A.6.65 read from T0506.t04.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)G13 (1zn6A)K73 because G (3-10) conformation "forbidden" or filtered. T0506 6 :PPVITPR 1zn6A 66 :PPGTRPE T0506 14 :T 1zn6A 74 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=27965 # 1w23A.6.127 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)P6 (1w23A)Q128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1w23A)S129 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRGT 1w23A 130 :IPDFSEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=27966 2a74B expands to /projects/compbio/data/pdb/2a74.pdb.gz 2a74B:# 2a74B.6.4 read from T0506.t04.many.frag # adding 2a74B to template set # found chain 2a74B in template set Warning: unaligning (T0506)P6 because of BadResidue code BAD_PEPTIDE in next template residue (2a74B)D732 Warning: unaligning (T0506)P7 because of BadResidue code BAD_PEPTIDE at template residue (2a74B)D732 Warning: unaligning (T0506)G13 (2a74B)N738 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 2a74B 733 :IIAEE T0506 14 :T 2a74B 739 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=27968 # 1z6mA.6.5 read from T0506.t04.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)G13 (1z6mA)K10 because G (3-10) conformation "forbidden" or filtered. T0506 6 :PPVITPR 1z6mA 3 :ISVIDAT T0506 14 :T 1z6mA 11 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=27970 1ux5A expands to /projects/compbio/data/pdb/1ux5.pdb.gz 1ux5A:# 1ux5A.6.139 read from T0506.t04.many.frag # adding 1ux5A to template set # found chain 1ux5A in template set Warning: unaligning (T0506)P7 (1ux5A)G1490 because T (delta_L) conformation "forbidden" or filtered. T0506 6 :P 1ux5A 1489 :E T0506 8 :VITPRGT 1ux5A 1491 :VRNLEDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=27972 # 1txlA.6.40 read from T0506.t04.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)P6 (1txlA)N41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1txlA)G42 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1txlA)F44 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :V 1txlA 43 :V T0506 10 :TPRGT 1txlA 45 :DDANV Number of specific fragments extracted= 2 number of extra gaps= 2 total=27974 # 1fl0A.6.44 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)P7 (1fl0A)N195 because G (3-10) conformation "forbidden" or filtered. T0506 6 :P 1fl0A 194 :V T0506 8 :VITPRGT 1fl0A 196 :HVPLEQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=27976 # 1yllA.6.5 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P6 (1yllA)L4 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1yllA)R5 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1yllA)D11 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1yllA 6 :ILRAV T0506 14 :T 1yllA 12 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=27978 # 1tca.6.249 read from T0506.t04.many.frag # found chain 1tca in training set T0506 6 :PPVITPRGT 1tca 250 :SADYGITDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=27979 # 1c5eA.6.62 read from T0506.t04.many.frag # found chain 1c5eA in training set Warning: unaligning (T0506)P6 (1c5eA)S77 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (1c5eA)G78 because S (epsilon) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1c5eA 79 :TFRYEDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=27980 # 2blkA.6.6 read from T0506.t04.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)P6 (2blkA)T7 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P7 (2blkA)N8 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGT 2blkA 9 :AFSINML Number of specific fragments extracted= 1 number of extra gaps= 1 total=27981 # 1iicA.7.27 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 7 :PVITPRGTK 1iicA 61 :KPKTPEDIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=27982 # 1crzA.7.41 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)P7 (1crzA)N48 because D (zeta) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1crzA 49 :PLDRARLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27983 # 2bayA.7.45 read from T0506.t04.many.frag # found chain 2bayA in template set T0506 7 :PVITPRGTK 2bayA 43 :EPLSIEEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=27984 # 1v4aA.7.20 read from T0506.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1v4aA)S27 because G (3-10) conformation "forbidden" or filtered. T0506 7 :P 1v4aA 21 :E T0506 9 :ITPR 1v4aA 23 :LAEE T0506 14 :TK 1v4aA 28 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=27987 # 1reqB.7.72 read from T0506.t04.many.frag # found chain 1reqB in template set T0506 7 :PVITPRGTK 1reqB 74 :PMYRPKDAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=27988 # 1lvmA.7.4 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)P7 (1lvmA)H-4 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1lvmA)H-3 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1lvmA)S3 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1lvmA -2 :HHGE T0506 14 :TK 1lvmA 4 :LF Number of specific fragments extracted= 2 number of extra gaps= 2 total=27990 # 1vr0A.7.21 read from T0506.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0506)P7 (1vr0A)D10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1vr0A)K16 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1vr0A 11 :DIKEE T0506 14 :TK 1vr0A 17 :VK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27992 # 1yllA.7.6 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P7 (1yllA)R5 because E (beta_S) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1yllA 6 :ILRAVDYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=27993 # 1b3aA.7.15 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)P7 (1b3aA)R17 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1b3aA)H23 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1b3aA 18 :PLPRA T0506 14 :TK 1b3aA 24 :IK Number of specific fragments extracted= 2 number of extra gaps= 2 total=27995 # 1ijyA.7.105 read from T0506.t04.many.frag # found chain 1ijyA in training set Warning: unaligning (T0506)K15 (1ijyA)P112 because P (beta_P) conformation "forbidden" or filtered. T0506 7 :PVITPRGT 1ijyA 104 :DRMRCDRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=27996 # 1tl9A.7.74 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)P7 (1tl9A)D100 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)V8 (1tl9A)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1tl9A)D106 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1tl9A 102 :ATRT T0506 14 :TK 1tl9A 107 :IC Number of specific fragments extracted= 2 number of extra gaps= 2 total=27998 # 1yk4A.7.24 read from T0506.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0506)V8 (1yk4A)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 7 :P 1yk4A 26 :P T0506 9 :ITPRGTK 1yk4A 28 :TKFEDLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28000 # 2d28C.7.64 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)G13 (2d28C)Q71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2d28C)G73 because P (beta_P) conformation "forbidden" or filtered. T0506 7 :PVITPR 2d28C 65 :PLVDAR T0506 14 :T 2d28C 72 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=28002 # 1ufaA.7.305 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)G13 (1ufaA)E312 because G (3-10) conformation "forbidden" or filtered. T0506 7 :PVITPR 1ufaA 306 :RKADLA T0506 14 :TK 1ufaA 313 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28004 # 1l8aA.7.60 read from T0506.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)K15 (1l8aA)P69 because P (beta_P) conformation "forbidden" or filtered. T0506 7 :PVITPRGT 1l8aA 61 :NTIPVEEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28005 # 2evrA.7.164 read from T0506.t04.many.frag # found chain 2evrA in template set T0506 7 :PVITPRGTK 2evrA 153 :QPITIAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28006 # 1e4cP.7.42 read from T0506.t04.many.frag # found chain 1e4cP in training set T0506 7 :PVITPRGTK 1e4cP 43 :TGIPYEKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28007 # 1c5eA.7.63 read from T0506.t04.many.frag # found chain 1c5eA in training set T0506 7 :PVITPRGTK 1c5eA 78 :GTFRYEDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28008 # 1ux5A.7.140 read from T0506.t04.many.frag # found chain 1ux5A in template set Warning: unaligning (T0506)P7 (1ux5A)G1490 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)I9 (1ux5A)R1492 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1ux5A)D1496 because G (3-10) conformation "forbidden" or filtered. T0506 8 :V 1ux5A 1491 :V T0506 10 :TPR 1ux5A 1493 :NLE T0506 14 :TK 1ux5A 1497 :AK Number of specific fragments extracted= 3 number of extra gaps= 3 total=28011 # 1z6mA.7.6 read from T0506.t04.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)G13 (1z6mA)K10 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1z6mA)N12 because E (beta_S) conformation "forbidden" or filtered. T0506 7 :PVITPR 1z6mA 4 :SVIDAT T0506 14 :T 1z6mA 11 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=28013 # 1kkeA.7.130 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1kkeA)T383 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1kkeA)E384 because P (beta_P) conformation "forbidden" or filtered. T0506 7 :P 1kkeA 376 :P T0506 9 :ITPRG 1kkeA 378 :LLTGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=28015 # 1skz.7.59 read from T0506.t04.many.frag # found chain 1skz in template set T0506 7 :PVITPRGTK 1skz 60 :ATCDISECP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28016 # 1oygA.7.39 read from T0506.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0506)G13 (1oygA)T72 because G (3-10) conformation "forbidden" or filtered. T0506 7 :PVITPR 1oygA 66 :PEFDSS T0506 14 :TK 1oygA 73 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28018 1nv8A expands to /projects/compbio/data/pdb/1nv8.pdb.gz 1nv8A:Skipped atom 799, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 801, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1199, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1201, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1630, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1634, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 1nv8A Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 1nv8A # 1nv8A.7.45 read from T0506.t04.many.frag # adding 1nv8A to template set # found chain 1nv8A in template set Warning: unaligning (T0506)V8 (1nv8A)G45 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1nv8A)D50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1nv8A)F52 because G (3-10) conformation "forbidden" or filtered. T0506 7 :P 1nv8A 44 :L T0506 9 :ITPR 1nv8A 46 :IRKE T0506 14 :T 1nv8A 51 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=28021 # 1txlA.7.41 read from T0506.t04.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)P7 (1txlA)G42 because T (delta_L) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1txlA 43 :VFDDANVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28022 # 1zn6A.7.66 read from T0506.t04.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)G13 (1zn6A)K73 because G (3-10) conformation "forbidden" or filtered. T0506 7 :PVITPR 1zn6A 67 :PGTRPE T0506 14 :TK 1zn6A 74 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28024 # 2a74B.7.5 read from T0506.t04.many.frag # found chain 2a74B in template set Warning: unaligning (T0506)P7 because of BadResidue code BAD_PEPTIDE at template residue (2a74B)D732 T0506 8 :VITPRGTK 2a74B 733 :IIAEENIV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28025 # 1w23A.7.128 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)P7 (1w23A)S129 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1w23A 130 :IPDFSEFQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28026 # 2pspA.7.8 read from T0506.t04.many.frag # found chain 2pspA in template set T0506 7 :PVITPRGTK 2pspA 9 :SRQDPKNRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28027 # 2blkA.7.7 read from T0506.t04.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)P7 (2blkA)N8 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 2blkA 9 :AFSINMLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28028 # 1iicA.8.28 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)I16 (1iicA)D70 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1iicA 62 :PKTPEDIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28029 # 1crzA.8.42 read from T0506.t04.many.frag # found chain 1crzA in template set T0506 8 :VITPRGTKI 1crzA 49 :PLDRARLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28030 # 1reqB.8.73 read from T0506.t04.many.frag # found chain 1reqB in template set T0506 8 :VITPRGTKI 1reqB 75 :MYRPKDAPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28031 # 1lvmA.8.5 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)V8 (1lvmA)H-3 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1lvmA)S3 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1lvmA -2 :HHGE T0506 14 :TKI 1lvmA 4 :LFK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28033 # 1vr0A.8.22 read from T0506.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0506)V8 (1vr0A)D11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1vr0A)K16 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1vr0A)N19 because T (delta_L) conformation "forbidden" or filtered. T0506 9 :ITPR 1vr0A 12 :IKEE T0506 14 :TK 1vr0A 17 :VK Number of specific fragments extracted= 2 number of extra gaps= 3 total=28035 # 1yllA.8.7 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)K15 (1yllA)P13 because P (beta_P) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1yllA 6 :ILRAVDY T0506 16 :I 1yllA 14 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=28037 # 2d28C.8.65 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)G13 (2d28C)Q71 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2d28C)G73 because P (beta_P) conformation "forbidden" or filtered. T0506 8 :VITPR 2d28C 66 :LVDAR T0506 14 :T 2d28C 72 :L T0506 16 :I 2d28C 74 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=28040 # 1v4aA.8.21 read from T0506.t04.many.frag # found chain 1v4aA in template set Warning: unaligning (T0506)V8 (1v4aA)P22 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1v4aA)S27 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1v4aA 23 :LAEE T0506 14 :TKI 1v4aA 28 :LSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28042 # 2bayA.8.46 read from T0506.t04.many.frag # found chain 2bayA in template set T0506 8 :VITPRGTKI 2bayA 44 :PLSIEEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28043 # 1ijyA.8.106 read from T0506.t04.many.frag # found chain 1ijyA in training set Warning: unaligning (T0506)K15 (1ijyA)P112 because P (beta_P) conformation "forbidden" or filtered. T0506 8 :VITPRGT 1ijyA 105 :RMRCDRL T0506 16 :I 1ijyA 113 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28045 # 1tl9A.8.75 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)G13 (1tl9A)D106 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1tl9A 101 :GATRT T0506 14 :TKI 1tl9A 107 :ICQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28047 # 1yk4A.8.25 read from T0506.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0506)V8 (1yk4A)G27 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1yk4A)D32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1yk4A)P34 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPR 1yk4A 28 :TKFE T0506 14 :T 1yk4A 33 :L T0506 16 :I 1yk4A 35 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=28050 # 1e4cP.8.43 read from T0506.t04.many.frag # found chain 1e4cP in training set T0506 8 :VITPRGTKI 1e4cP 44 :GIPYEKLTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28051 # 1ufaA.8.306 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)G13 (1ufaA)E312 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1ufaA)A314 because P (beta_P) conformation "forbidden" or filtered. T0506 8 :VITPR 1ufaA 307 :KADLA T0506 14 :T 1ufaA 313 :K T0506 16 :I 1ufaA 315 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=28054 # 1ux5A.8.141 read from T0506.t04.many.frag # found chain 1ux5A in template set Warning: unaligning (T0506)G13 (1ux5A)D1496 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1ux5A 1491 :VRNLE T0506 14 :TKI 1ux5A 1497 :AKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28056 # 2pspA.8.9 read from T0506.t04.many.frag # found chain 2pspA in template set T0506 8 :VITPRGTKI 2pspA 10 :RQDPKNRVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28057 # 1nv8A.8.46 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)V8 (1nv8A)G45 because L (left) conformation "forbidden" or filtered. T0506 9 :ITPRGTKI 1nv8A 46 :IRKEDLFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28058 # 1l8aA.8.61 read from T0506.t04.many.frag # found chain 1l8aA in template set T0506 8 :VITPRGTKI 1l8aA 62 :TIPVEEQPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28059 # 1skz.8.60 read from T0506.t04.many.frag # found chain 1skz in template set T0506 8 :VITPRGTKI 1skz 61 :TCDISECPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28060 # 1w23A.8.129 read from T0506.t04.many.frag # found chain 1w23A in training set T0506 8 :VITPRGTKI 1w23A 130 :IPDFSEFQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28061 # 1b3aA.8.16 read from T0506.t04.many.frag # found chain 1b3aA in training set Warning: unaligning (T0506)I16 (1b3aA)E26 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRGTK 1b3aA 18 :PLPRAHIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28062 1uzeA expands to /projects/compbio/data/pdb/1uze.pdb.gz 1uzeA:# 1uzeA.8.64 read from T0506.t04.many.frag # adding 1uzeA to template set # found chain 1uzeA in template set T0506 8 :VITPRGTKI 1uzeA 101 :KFDVNQLQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28063 # 1fl0A.8.46 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)G13 (1fl0A)Q201 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1fl0A 196 :HVPLE T0506 14 :TKI 1fl0A 202 :MQN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28065 # 1wpbA.8.91 read from T0506.t04.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)S90 Warning: unaligning (T0506)I9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 10 :TPRGTKI 1wpbA 92 :DERRVTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28066 # 1kkeA.8.131 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)V8 (1kkeA)P377 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1kkeA)T383 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPRG 1kkeA 378 :LLTGD T0506 15 :KI 1kkeA 384 :EP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28068 # 1rdqE.8.36 read from T0506.t04.many.frag # found chain 1rdqE in training set Warning: unaligning (T0506)I9 (1rdqE)A38 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :V 1rdqE 37 :T T0506 10 :TPRGTKI 1rdqE 39 :QLDQFDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28070 # 2evrA.8.165 read from T0506.t04.many.frag # found chain 2evrA in template set T0506 8 :VITPRGTKI 2evrA 154 :PITIAELVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28071 # 1z6mA.8.7 read from T0506.t04.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)G13 (1z6mA)K10 because G (3-10) conformation "forbidden" or filtered. T0506 8 :VITPR 1z6mA 5 :VIDAT T0506 14 :TKI 1z6mA 11 :VNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28073 # 1vpsA.8.168 read from T0506.t04.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)K15 (1vpsA)V207 because Y (epsilon') conformation "forbidden" or filtered. T0506 8 :VITPRGT 1vpsA 200 :DMVNKDQ T0506 16 :I 1vpsA 208 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=28075 # 1txlA.8.42 read from T0506.t04.many.frag # found chain 1txlA in training set T0506 8 :VITPRGTKI 1txlA 43 :VFDDANVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28076 # 1iicA.9.29 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 9 :ITPRGTKIE 1iicA 63 :KTPEDISDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28077 # 1crzA.9.43 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)I16 (1crzA)Q57 because Y (epsilon') conformation "forbidden" or filtered. T0506 9 :ITPRGTK 1crzA 50 :LDRARLP T0506 17 :E 1crzA 58 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=28079 # 1reqB.9.74 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)E17 (1reqB)K84 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPRGTKI 1reqB 76 :YRPKDAPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28080 # 1lvmA.9.6 read from T0506.t04.many.frag # found chain 1lvmA in training set T0506 9 :ITPRGTKIE 1lvmA -2 :HHGESLFKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28081 # 2d28C.9.66 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)G13 (2d28C)Q71 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 2d28C 67 :VDAR T0506 14 :TKIE 2d28C 72 :LGDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28083 # 1yllA.9.8 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)G13 (1yllA)D11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1yllA)P13 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPR 1yllA 7 :LRAV T0506 14 :T 1yllA 12 :Y T0506 16 :IE 1yllA 14 :RM Number of specific fragments extracted= 3 number of extra gaps= 2 total=28086 # 1vr0A.9.23 read from T0506.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0506)I16 (1vr0A)N19 because T (delta_L) conformation "forbidden" or filtered. T0506 9 :ITPRGTK 1vr0A 12 :IKEEKVK T0506 17 :E 1vr0A 20 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=28088 # 2bayA.9.47 read from T0506.t04.many.frag # found chain 2bayA in template set T0506 9 :ITPRGTKIE 2bayA 45 :LSIEEIVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28089 # 1v4aA.9.22 read from T0506.t04.many.frag # found chain 1v4aA in template set T0506 9 :ITPRGTKIE 1v4aA 23 :LAEESLSAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28090 # 1ufaA.9.307 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)G13 (1ufaA)E312 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1ufaA)A314 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1ufaA)Y316 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPR 1ufaA 308 :ADLA T0506 14 :T 1ufaA 313 :K T0506 16 :I 1ufaA 315 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=28093 # 2pspA.9.10 read from T0506.t04.many.frag # found chain 2pspA in template set T0506 9 :ITPRGTKIE 2pspA 11 :QDPKNRVNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28094 # 1skz.9.61 read from T0506.t04.many.frag # found chain 1skz in template set Warning: unaligning (T0506)E17 (1skz)G70 because T (delta_L) conformation "forbidden" or filtered. T0506 9 :ITPRGTKI 1skz 62 :CDISECPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28095 # 1ijyA.9.107 read from T0506.t04.many.frag # found chain 1ijyA in training set Warning: unaligning (T0506)K15 (1ijyA)P112 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPRGT 1ijyA 106 :MRCDRL T0506 16 :IE 1ijyA 113 :EQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28097 # 1ux5A.9.142 read from T0506.t04.many.frag # found chain 1ux5A in template set T0506 9 :ITPRGTKIE 1ux5A 1492 :RNLEDAKPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28098 # 1yk4A.9.26 read from T0506.t04.many.frag # found chain 1yk4A in template set Warning: unaligning (T0506)K15 (1yk4A)P34 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPRGT 1yk4A 28 :TKFEDL T0506 16 :IE 1yk4A 35 :DD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28100 # 1tl9A.9.76 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)E17 (1tl9A)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 9 :ITPRGTKI 1tl9A 102 :ATRTDICQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28101 # 1e4cP.9.44 read from T0506.t04.many.frag # found chain 1e4cP in training set Warning: unaligning (T0506)G13 (1e4cP)K49 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1e4cP 45 :IPYE T0506 14 :TKIE 1e4cP 50 :LTES Number of specific fragments extracted= 2 number of extra gaps= 1 total=28103 # 1l8aA.9.62 read from T0506.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)G13 (1l8aA)E67 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1l8aA 63 :IPVE T0506 14 :TKIE 1l8aA 68 :QPEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28105 # 2evrA.9.166 read from T0506.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0506)E17 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0506 9 :ITPRGTKI 2evrA 155 :ITIAELVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28106 # 1w23A.9.130 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)K15 (1w23A)Q137 because N (gamma') conformation "forbidden" or filtered. T0506 9 :ITPRGT 1w23A 131 :PDFSEF T0506 16 :IE 1w23A 138 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28108 # 1vpsA.9.169 read from T0506.t04.many.frag # found chain 1vpsA in template set T0506 9 :ITPRGTKIE 1vpsA 201 :MVNKDQVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28109 # 1wteA.9.27 read from T0506.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0506)I9 (1wteA)L28 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P11 (1wteA)S30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1wteA)S34 because P (beta_P) conformation "forbidden" or filtered. T0506 10 :T 1wteA 29 :M T0506 12 :RGT 1wteA 31 :ETM T0506 16 :IE 1wteA 35 :IN Number of specific fragments extracted= 3 number of extra gaps= 3 total=28112 # 1nv8A.9.47 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)G13 (1nv8A)D50 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1nv8A 46 :IRKE T0506 14 :TKIE 1nv8A 51 :LFLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28114 # 1kkeA.9.132 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)K15 (1kkeA)E384 because P (beta_P) conformation "forbidden" or filtered. T0506 9 :ITPRGT 1kkeA 378 :LLTGDT T0506 16 :IE 1kkeA 385 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28116 # 1wpbA.9.92 read from T0506.t04.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)I9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wpbA)I91 T0506 10 :TPRGTKIE 1wpbA 92 :DERRVTFL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28117 # 1kveA.9.22 read from T0506.t04.many.frag # found chain 1kveA in training set Warning: unaligning (T0506)I16 (1kveA)G48 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1kveA)G49 because S (epsilon) conformation "forbidden" or filtered. T0506 9 :ITPRGTK 1kveA 41 :ATFGGLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28118 # 1txlA.9.43 read from T0506.t04.many.frag # found chain 1txlA in training set T0506 9 :ITPRGTKIE 1txlA 44 :FDDANVQNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28119 # 1z6mA.9.8 read from T0506.t04.many.frag # found chain 1z6mA in template set Warning: unaligning (T0506)T10 (1z6mA)D7 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G13 (1z6mA)K10 because G (3-10) conformation "forbidden" or filtered. T0506 9 :I 1z6mA 6 :I T0506 11 :PR 1z6mA 8 :AT T0506 14 :TKIE 1z6mA 11 :VNTE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28122 # 1uzeA.9.65 read from T0506.t04.many.frag # found chain 1uzeA in template set Warning: unaligning (T0506)G13 (1uzeA)Q106 because G (3-10) conformation "forbidden" or filtered. T0506 9 :ITPR 1uzeA 102 :FDVN T0506 14 :TKIE 1uzeA 107 :LQNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28124 # 2a74B.9.7 read from T0506.t04.many.frag # found chain 2a74B in template set Warning: unaligning (T0506)G13 (2a74B)N738 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2a74B)V740 because N (gamma') conformation "forbidden" or filtered. T0506 9 :ITPR 2a74B 734 :IAEE T0506 14 :T 2a74B 739 :I T0506 16 :IE 2a74B 741 :SR Number of specific fragments extracted= 3 number of extra gaps= 2 total=28127 # 1iicA.10.30 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)G13 (1iicA)D67 because G (3-10) conformation "forbidden" or filtered. T0506 10 :TPR 1iicA 64 :TPE T0506 14 :TKIEP 1iicA 68 :ISDKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28129 # 1crzA.10.44 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)G13 (1crzA)R54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1crzA)Q57 because Y (epsilon') conformation "forbidden" or filtered. T0506 10 :TPR 1crzA 51 :DRA T0506 14 :TK 1crzA 55 :LP T0506 17 :EP 1crzA 58 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28132 # 1lvmA.10.7 read from T0506.t04.many.frag # found chain 1lvmA in training set T0506 10 :TPRGTKIEP 1lvmA -1 :HGESLFKGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28133 # 1yllA.10.9 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yllA)G22 T0506 10 :TPRGTKIE 1yllA 8 :RAVDYPRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28134 # 1reqB.10.75 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)K15 (1reqB)P82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1reqB)G86 T0506 10 :TPRGT 1reqB 77 :RPKDA T0506 16 :IE 1reqB 83 :KK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28136 # 2d28C.10.67 read from T0506.t04.many.frag # found chain 2d28C in template set T0506 10 :TPRGTKIEP 2d28C 68 :DARQLGDTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28137 # 2pspA.10.11 read from T0506.t04.many.frag # found chain 2pspA in template set T0506 10 :TPRGTKIEP 2pspA 12 :DPKNRVNCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28138 # 1vr0A.10.24 read from T0506.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0506)E17 (1vr0A)K20 because P (beta_P) conformation "forbidden" or filtered. T0506 10 :TPRGTKI 1vr0A 13 :KEEKVKN T0506 18 :P 1vr0A 21 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=28140 # 1vpsA.10.170 read from T0506.t04.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)E17 (1vpsA)N209 because D (zeta) conformation "forbidden" or filtered. T0506 10 :TPRGTKI 1vpsA 202 :VNKDQVL T0506 18 :P 1vpsA 210 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=28142 # 1ufaA.10.308 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)G13 (1ufaA)E312 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1ufaA)D317 because D (zeta) conformation "forbidden" or filtered. T0506 10 :TPR 1ufaA 309 :DLA T0506 14 :TKIE 1ufaA 313 :KAPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=28144 # 1ux5A.10.143 read from T0506.t04.many.frag # found chain 1ux5A in template set Warning: unaligning (T0506)G13 (1ux5A)D1496 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1ux5A)E1501 because T (delta_L) conformation "forbidden" or filtered. T0506 10 :TPR 1ux5A 1493 :NLE T0506 14 :TKIE 1ux5A 1497 :AKPP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28146 1zkdA expands to /projects/compbio/data/pdb/1zkd.pdb.gz 1zkdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zkdA.10.141 read from T0506.t04.many.frag # adding 1zkdA to template set # found chain 1zkdA in template set T0506 10 :TPRGTKIEP 1zkdA 142 :SFEDVPEGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28147 # 1nv8A.10.48 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nv8A)L56 T0506 10 :TPRGTKIE 1nv8A 47 :RKEDLFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28148 # 1l8aA.10.63 read from T0506.t04.many.frag # found chain 1l8aA in template set T0506 10 :TPRGTKIEP 1l8aA 64 :PVEEQPEYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28149 # 1v4aA.10.23 read from T0506.t04.many.frag # found chain 1v4aA in template set T0506 10 :TPRGTKIEP 1v4aA 24 :AEESLSAQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28150 # 1wpbA.10.93 read from T0506.t04.many.frag # found chain 1wpbA in template set T0506 10 :TPRGTKIEP 1wpbA 92 :DERRVTFLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28151 # 1w23A.10.131 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)E17 (1w23A)N139 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :TPRGTKI 1w23A 132 :DFSEFQL T0506 18 :P 1w23A 140 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28153 # 1uzeA.10.66 read from T0506.t04.many.frag # found chain 1uzeA in template set T0506 10 :TPRGTKIEP 1uzeA 103 :DVNQLQNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28154 # 1tl9A.10.77 read from T0506.t04.many.frag # found chain 1tl9A in training set Warning: unaligning (T0506)G13 (1tl9A)D106 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1tl9A)C108 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1tl9A)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 10 :TPR 1tl9A 103 :TRT T0506 14 :T 1tl9A 107 :I T0506 16 :I 1tl9A 109 :Q T0506 18 :P 1tl9A 111 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=28158 # 1kkeA.10.133 read from T0506.t04.many.frag # found chain 1kkeA in template set Warning: unaligning (T0506)T14 (1kkeA)T383 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1kkeA)F387 because G (3-10) conformation "forbidden" or filtered. T0506 10 :TPRG 1kkeA 379 :LTGD T0506 15 :KIE 1kkeA 384 :EPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28160 # 1ds1A.10.71 read from T0506.t04.many.frag # found chain 1ds1A in training set T0506 10 :TPRGTKIEP 1ds1A 72 :ADADLPTTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28161 # 1txlA.10.44 read from T0506.t04.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)P18 (1txlA)T53 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :TPRGTKIE 1txlA 45 :DDANVQNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28162 # 1fl0A.10.102 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)P11 (1fl0A)F253 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :T 1fl0A 252 :T T0506 12 :RGTKIEP 1fl0A 254 :DAFPGEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28164 # 1kveA.10.23 read from T0506.t04.many.frag # found chain 1kveA in training set Warning: unaligning (T0506)R12 (1kveA)G44 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1kveA)G49 because S (epsilon) conformation "forbidden" or filtered. T0506 10 :TP 1kveA 42 :TF T0506 13 :GTKI 1kveA 45 :GLAG T0506 18 :P 1kveA 50 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=28167 # 1yjsA.10.143 read from T0506.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0506)T14 (1yjsA)H148 because L (left) conformation "forbidden" or filtered. T0506 10 :TPRG 1yjsA 144 :DPET T0506 15 :KIEP 1yjsA 149 :VIDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28169 # 1skz.10.62 read from T0506.t04.many.frag # found chain 1skz in template set Warning: unaligning (T0506)K15 (1skz)P68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1skz)M71 because E (beta_S) conformation "forbidden" or filtered. T0506 10 :TPRGT 1skz 63 :DISEC T0506 16 :IE 1skz 69 :EG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28171 # 1wteA.10.28 read from T0506.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0506)P11 (1wteA)S30 because G (3-10) conformation "forbidden" or filtered. T0506 10 :T 1wteA 29 :M T0506 12 :RGTKIEP 1wteA 31 :ETMSINP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28173 # 2evrA.10.167 read from T0506.t04.many.frag # found chain 2evrA in template set Warning: unaligning (T0506)G13 (2evrA)E159 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (2evrA)G163 because T (delta_L) conformation "forbidden" or filtered. T0506 10 :TPR 2evrA 156 :TIA T0506 14 :TKI 2evrA 160 :LVA T0506 18 :P 2evrA 164 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=28176 1s4bP expands to /projects/compbio/data/pdb/1s4b.pdb.gz 1s4bP:# 1s4bP.10.39 read from T0506.t04.many.frag # adding 1s4bP to template set # found chain 1s4bP in template set Warning: unaligning (T0506)G13 (1s4bP)D58 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1s4bP)S60 because Y (epsilon') conformation "forbidden" or filtered. T0506 10 :TPR 1s4bP 55 :EFE T0506 14 :T 1s4bP 59 :V T0506 16 :IEP 1s4bP 61 :YES Number of specific fragments extracted= 3 number of extra gaps= 2 total=28179 # 1j7xA.10.79 read from T0506.t04.many.frag # found chain 1j7xA in training set Warning: unaligning (T0506)E17 (1j7xA)D88 because P (beta_P) conformation "forbidden" or filtered. T0506 10 :TPRGTKI 1j7xA 81 :QAENIPE T0506 18 :P 1j7xA 89 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28181 # 1iicA.11.31 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)I16 (1iicA)D70 because G (3-10) conformation "forbidden" or filtered. T0506 11 :PRGTK 1iicA 65 :PEDIS T0506 17 :EPS 1iicA 71 :KPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28183 # 1crzA.11.45 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)G13 (1crzA)R54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1crzA)Q58 because D (zeta) conformation "forbidden" or filtered. T0506 11 :PR 1crzA 52 :RA T0506 14 :TKI 1crzA 55 :LPQ T0506 18 :PS 1crzA 59 :PG Number of specific fragments extracted= 3 number of extra gaps= 2 total=28186 # 1lvmA.11.8 read from T0506.t04.many.frag # found chain 1lvmA in training set T0506 11 :PRGTKIEPS 1lvmA 1 :GESLFKGPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28187 # 1yllA.11.10 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)G13 (1yllA)D11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yllA)G22 T0506 11 :PR 1yllA 9 :AV T0506 14 :TKIE 1yllA 12 :YPRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28189 # 2pspA.11.12 read from T0506.t04.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)E17 (2pspA)C19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (2pspA)G20 because S (epsilon) conformation "forbidden" or filtered. T0506 11 :PRGTKI 2pspA 13 :PKNRVN T0506 19 :S 2pspA 21 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=28191 # 2d28C.11.68 read from T0506.t04.many.frag # found chain 2d28C in template set T0506 11 :PRGTKIEPS 2d28C 69 :ARQLGDTPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28192 # 1reqB.11.76 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)E17 (1reqB)K84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1reqB)G86 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)G86 T0506 11 :PRGTKI 1reqB 78 :PKDAPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28193 # 1vpsA.11.171 read from T0506.t04.many.frag # found chain 1vpsA in template set T0506 11 :PRGTKIEPS 1vpsA 203 :NKDQVLNPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28194 # 1ds1A.11.72 read from T0506.t04.many.frag # found chain 1ds1A in training set Warning: unaligning (T0506)G13 (1ds1A)D75 because G (3-10) conformation "forbidden" or filtered. T0506 11 :PR 1ds1A 73 :DA T0506 14 :TKIEPS 1ds1A 76 :LPTTPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28196 # 1vr0A.11.25 read from T0506.t04.many.frag # found chain 1vr0A in template set Warning: unaligning (T0506)G13 (1vr0A)K16 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1vr0A)N19 because T (delta_L) conformation "forbidden" or filtered. T0506 11 :PR 1vr0A 14 :EE T0506 14 :TK 1vr0A 17 :VK T0506 17 :EPS 1vr0A 20 :KTA Number of specific fragments extracted= 3 number of extra gaps= 2 total=28199 # 1fl0A.11.103 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)P11 (1fl0A)F253 because E (beta_S) conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1fl0A 254 :DAFPGEPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28200 # 1zkdA.11.142 read from T0506.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0506)E17 (1zkdA)G149 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1zkdA)A151 because Y (epsilon') conformation "forbidden" or filtered. T0506 11 :PRGTKI 1zkdA 143 :FEDVPE T0506 18 :P 1zkdA 150 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=28202 1z70X expands to /projects/compbio/data/pdb/1z70.pdb.gz 1z70X:Skipped atom 29, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 31, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 482, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 484, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 486, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 623, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 754, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 756, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 758, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 760, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 762, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 834, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 836, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 838, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 840, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1002, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1004, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1006, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1190, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1288, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1290, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1292, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1294, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1296, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1298, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1300, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1302, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1304, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1314, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1316, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1318, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1320, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1322, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 1885, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1887, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1889, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1891, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1959, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1961, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1963, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 1965, because occupancy 0.300 <= existing 0.700 in 1z70X Bad short name: OD3 for alphabet: pdb_atoms Bad short name: OD3 for alphabet: pdb_atoms Bad short name: OD3 for alphabet: pdb_atoms Skipped atom 2046, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2048, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2050, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2052, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2054, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2056, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2112, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2114, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2120, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 2122, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 2124, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 2126, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 2128, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 2164, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 2166, because occupancy 0.300 <= existing 0.700 in 1z70X Skipped atom 2247, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2249, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2251, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2253, because occupancy 0.400 <= existing 0.600 in 1z70X Skipped atom 2260, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 2262, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 2264, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 2266, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 2268, because occupancy 0.500 <= existing 0.500 in 1z70X Skipped atom 2270, because occupancy 0.500 <= existing 0.500 in 1z70X # 1z70X.11.125 read from T0506.t04.many.frag # adding 1z70X to template set # found chain 1z70X in template set Warning: unaligning (T0506)P11 (1z70X)I1198 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1z70X 1199 :LHRPDHPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28203 # 1nv8A.11.49 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)G13 (1nv8A)D50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nv8A)L56 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nv8A)L56 T0506 11 :PR 1nv8A 48 :KE T0506 14 :TKIE 1nv8A 51 :LFLK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28205 # 1l8aA.11.64 read from T0506.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)G13 (1l8aA)E67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1l8aA)P69 because P (beta_P) conformation "forbidden" or filtered. T0506 11 :PR 1l8aA 65 :VE T0506 14 :T 1l8aA 68 :Q T0506 16 :IEPS 1l8aA 70 :EYPG Number of specific fragments extracted= 3 number of extra gaps= 2 total=28208 # 1q7lA.11.87 read from T0506.t04.many.frag # found chain 1q7lA in training set Warning: unaligning (T0506)G13 (1q7lA)H90 because G (3-10) conformation "forbidden" or filtered. T0506 11 :PR 1q7lA 88 :KE T0506 14 :TKIEPS 1q7lA 91 :WSHDPF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28210 # 1wteA.11.29 read from T0506.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0506)P11 (1wteA)S30 because G (3-10) conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1wteA 31 :ETMSINPF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28211 # 1wpbA.11.94 read from T0506.t04.many.frag # found chain 1wpbA in template set T0506 11 :PRGTKIEPS 1wpbA 93 :ERRVTFLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28212 2bxxA expands to /projects/compbio/data/pdb/2bxx.pdb.gz 2bxxA:# 2bxxA.11.107 read from T0506.t04.many.frag # adding 2bxxA to template set # found chain 2bxxA in template set T0506 11 :PRGTKIEPS 2bxxA 134 :PDKFDQYPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28213 # 1eybA.11.110 read from T0506.t04.many.frag # found chain 1eybA in template set Warning: unaligning (T0506)E17 (1eybA)D91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1eybA)N93 because P (beta_P) conformation "forbidden" or filtered. T0506 11 :PRGTKI 1eybA 85 :WDEVDP T0506 18 :P 1eybA 92 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=28215 # 2blkA.11.11 read from T0506.t04.many.frag # found chain 2blkA in template set Warning: unaligning (T0506)G13 (2blkA)M14 because G (3-10) conformation "forbidden" or filtered. T0506 11 :PR 2blkA 12 :IN T0506 14 :TKIEPS 2blkA 15 :LKEFPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28217 1qouA expands to /projects/compbio/data/pdb/1qou.pdb.gz 1qouA:# 1qouA.11.49 read from T0506.t04.many.frag # adding 1qouA to template set # found chain 1qouA in template set T0506 11 :PRGTKIEPS 1qouA 43 :PSAVTSTPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28218 2f2hA expands to /projects/compbio/data/pdb/2f2h.pdb.gz 2f2hA:# 2f2hA.11.43 read from T0506.t04.many.frag # adding 2f2hA to template set # found chain 2f2hA in template set Warning: unaligning (T0506)G13 (2f2hA)W46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (2f2hA)L48 because Y (epsilon') conformation "forbidden" or filtered. T0506 11 :PR 2f2hA 44 :RT T0506 14 :T 2f2hA 47 :Q T0506 16 :IEPS 2f2hA 49 :DTPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=28221 # 1fcdA.11.117 read from T0506.t04.many.frag # found chain 1fcdA in template set T0506 11 :PRGTKIEPS 1fcdA 118 :EEAAAKLPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28222 # 1ux5A.11.144 read from T0506.t04.many.frag # found chain 1ux5A in template set Warning: unaligning (T0506)G13 (1ux5A)D1496 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1ux5A)E1501 because T (delta_L) conformation "forbidden" or filtered. T0506 11 :PR 1ux5A 1494 :LE T0506 14 :TKIE 1ux5A 1497 :AKPP T0506 19 :S 1ux5A 1502 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=28225 1d8hA expands to /projects/compbio/data/pdb/1d8h.pdb.gz 1d8hA:# 1d8hA.11.7 read from T0506.t04.many.frag # adding 1d8hA to template set # found chain 1d8hA in template set Warning: unaligning (T0506)K15 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)W251 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)W251 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)K252 T0506 11 :PRGT 1d8hA 246 :IWAQ T0506 18 :PS 1d8hA 253 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28227 # 1w23A.11.132 read from T0506.t04.many.frag # found chain 1w23A in training set Warning: unaligning (T0506)S19 (1w23A)N141 because G (3-10) conformation "forbidden" or filtered. T0506 11 :PRGTKIEP 1w23A 133 :FSEFQLNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28228 # 1e4cP.11.46 read from T0506.t04.many.frag # found chain 1e4cP in training set Warning: unaligning (T0506)K15 (1e4cP)T51 because E (beta_S) conformation "forbidden" or filtered. T0506 11 :PRGT 1e4cP 47 :YEKL T0506 16 :IEPS 1e4cP 52 :ESHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28230 # 1gyxA.11.62 read from T0506.t04.many.frag # found chain 1gyxA in training set T0506 11 :PRGTKIEPS 1gyxA 63 :MEALIKKPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28231 # 1q0uA.11.5 read from T0506.t04.many.frag # found chain 1q0uA in template set Warning: unaligning (T0506)E17 (1q0uA)Q12 because P (beta_P) conformation "forbidden" or filtered. T0506 11 :PRGTKI 1q0uA 6 :FTRFPF T0506 18 :PS 1q0uA 13 :PF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28233 # 1iicA.12.32 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)G13 (1iicA)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1iicA)D70 because G (3-10) conformation "forbidden" or filtered. T0506 12 :R 1iicA 66 :E T0506 14 :TK 1iicA 68 :IS T0506 17 :EPSA 1iicA 71 :KPLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28236 # 1lvmA.12.9 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)E17 (1lvmA)G7 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :RGTKI 1lvmA 2 :ESLFK T0506 18 :PSA 1lvmA 8 :PRD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28238 # 1crzA.12.46 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)A20 (1crzA)S61 because Y (epsilon') conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1crzA 53 :ARLPQQPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28239 # 2pspA.12.13 read from T0506.t04.many.frag # found chain 2pspA in template set T0506 12 :RGTKIEPSA 2pspA 14 :KNRVNCGFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28240 # 1vpsA.12.172 read from T0506.t04.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)K15 (1vpsA)V207 because Y (epsilon') conformation "forbidden" or filtered. T0506 12 :RGT 1vpsA 204 :KDQ T0506 16 :IEPSA 1vpsA 208 :LNPIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28242 # 1z70X.12.126 read from T0506.t04.many.frag # found chain 1z70X in template set T0506 12 :RGTKIEPSA 1z70X 1199 :LHRPDHPVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28243 # 1yllA.12.11 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yllA)G22 T0506 12 :RGTKIE 1yllA 10 :VDYPRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28244 # 1fl0A.12.104 read from T0506.t04.many.frag # found chain 1fl0A in training set T0506 12 :RGTKIEPSA 1fl0A 254 :DAFPGEPDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28245 # 1ds1A.12.73 read from T0506.t04.many.frag # found chain 1ds1A in training set Warning: unaligning (T0506)A20 (1ds1A)S82 because Y (epsilon') conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1ds1A 74 :ADLPTTPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28246 # 1nv8A.12.50 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)G13 (1nv8A)D50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1nv8A)F52 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nv8A)L56 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nv8A)L56 Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE at template residue (1nv8A)G57 T0506 12 :R 1nv8A 49 :E T0506 14 :T 1nv8A 51 :L T0506 16 :IE 1nv8A 53 :LK Number of specific fragments extracted= 3 number of extra gaps= 3 total=28249 # 1q7lA.12.88 read from T0506.t04.many.frag # found chain 1q7lA in training set T0506 12 :RGTKIEPSA 1q7lA 89 :EHWSHDPFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28250 # 1reqB.12.77 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1reqB)G86 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)G86 Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)Y87 T0506 12 :RGTKIE 1reqB 79 :KDAPKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28251 # 2d28C.12.69 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)A20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2d28C)M79 T0506 12 :RGTKIEPS 2d28C 70 :RQLGDTPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=28252 # 1wteA.12.30 read from T0506.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0506)G13 (1wteA)T32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1wteA)S34 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :R 1wteA 31 :E T0506 14 :T 1wteA 33 :M T0506 16 :IEPSA 1wteA 35 :INPFM Number of specific fragments extracted= 3 number of extra gaps= 2 total=28255 # 1gyxA.12.63 read from T0506.t04.many.frag # found chain 1gyxA in training set T0506 12 :RGTKIEPSA 1gyxA 64 :EALIKKPGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28256 # 1eybA.12.111 read from T0506.t04.many.frag # found chain 1eybA in template set T0506 12 :RGTKIEPSA 1eybA 86 :DEVDPDPNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28257 # 1l8aA.12.65 read from T0506.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)A20 (1l8aA)N74 because N (gamma') conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1l8aA 66 :EEQPEYPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28258 # 2f2hA.12.44 read from T0506.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0506)I16 (2f2hA)D49 because L (left) conformation "forbidden" or filtered. T0506 12 :RGTK 2f2hA 45 :TWQL T0506 17 :EPSA 2f2hA 50 :TPLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28260 # 1c5eA.12.68 read from T0506.t04.many.frag # found chain 1c5eA in training set T0506 12 :RGTKIEPSA 1c5eA 83 :EDVLWPEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28261 # 1fcdA.12.118 read from T0506.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0506)A20 (1fcdA)A127 because N (gamma') conformation "forbidden" or filtered. T0506 12 :RGTKIEPS 1fcdA 119 :EAAAKLPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=28262 # 1d8hA.12.8 read from T0506.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0506)K15 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)W251 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)W251 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)K252 Warning: unaligning (T0506)S19 (1d8hA)T254 because P (beta_P) conformation "forbidden" or filtered. T0506 12 :RGT 1d8hA 247 :WAQ T0506 18 :P 1d8hA 253 :P T0506 20 :A 1d8hA 255 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=28265 # 1mtyB.12.29 read from T0506.t04.many.frag # found chain 1mtyB in training set T0506 12 :RGTKIEPSA 1mtyB 35 :MGYFVTPRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28266 # 2blkA.12.12 read from T0506.t04.many.frag # found chain 2blkA in template set T0506 12 :RGTKIEPSA 2blkA 13 :NMLKEFPTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28267 # 1zkdA.12.143 read from T0506.t04.many.frag # found chain 1zkdA in template set T0506 12 :RGTKIEPSA 1zkdA 144 :EDVPEGPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28268 # 1qo7A.12.43 read from T0506.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0506)G13 (1qo7A)S47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0506 12 :R 1qo7A 46 :E T0506 14 :TKIE 1qo7A 48 :LQAD T0506 19 :SA 1qo7A 53 :RF Number of specific fragments extracted= 3 number of extra gaps= 2 total=28271 # 1utyA.12.138 read from T0506.t04.many.frag # found chain 1utyA in template set Warning: unaligning (T0506)G13 (1utyA)E140 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K15 (1utyA)P142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1utyA)V147 because D (zeta) conformation "forbidden" or filtered. T0506 12 :R 1utyA 139 :N T0506 14 :T 1utyA 141 :M T0506 16 :IEPS 1utyA 143 :DLPG Number of specific fragments extracted= 3 number of extra gaps= 3 total=28274 # 2bxxA.12.108 read from T0506.t04.many.frag # found chain 2bxxA in template set T0506 12 :RGTKIEPSA 2bxxA 135 :DKFDQYPLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28275 1l2wI expands to /projects/compbio/data/pdb/1l2w.pdb.gz 1l2wI:# 1l2wI.12.39 read from T0506.t04.many.frag # adding 1l2wI to template set # found chain 1l2wI in template set Warning: unaligning (T0506)G13 (1l2wI)S57 because N (gamma') conformation "forbidden" or filtered. T0506 12 :R 1l2wI 56 :A T0506 14 :TKIEPSA 1l2wI 58 :RIIERLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28277 1kjyB expands to /projects/compbio/data/pdb/1kjy.pdb.gz 1kjyB:# 1kjyB.12.26 read from T0506.t04.many.frag # adding 1kjyB to template set # found chain 1kjyB in template set Warning: unaligning (T0506)G13 (1kjyB)D523 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 because last residue in template chain is (1kjyB)L530 T0506 12 :R 1kjyB 522 :E T0506 14 :TKIEPS 1kjyB 524 :LVLPEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28279 # 1r6fA.12.59 read from T0506.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0506)E17 (1r6fA)G87 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r6fA)D91 T0506 12 :RGTKI 1r6fA 82 :DAILK T0506 18 :P 1r6fA 88 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=28281 # 1iicA.13.33 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)K15 (1iicA)S69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1iicA)D70 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GT 1iicA 67 :DI T0506 17 :EPSAG 1iicA 71 :KPLPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28283 # 1z70X.13.127 read from T0506.t04.many.frag # found chain 1z70X in template set Warning: unaligning (T0506)G13 (1z70X)H1200 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T14 (1z70X)R1201 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1z70X)L1207 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPS 1z70X 1202 :PDHPV T0506 21 :G 1z70X 1208 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=28285 # 1lvmA.13.10 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)G13 (1lvmA)S3 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1lvmA)D10 because N (gamma') conformation "forbidden" or filtered. T0506 14 :TKIEPS 1lvmA 4 :LFKGPR T0506 21 :G 1lvmA 11 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=28287 # 1fl0A.13.105 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)G21 (1fl0A)E263 because E (beta_S) conformation "forbidden" or filtered. T0506 13 :GTKIEPSA 1fl0A 255 :AFPGEPDK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28288 # 1vpsA.13.173 read from T0506.t04.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)K15 (1vpsA)V207 because Y (epsilon') conformation "forbidden" or filtered. T0506 13 :GT 1vpsA 205 :DQ T0506 16 :IEPSAG 1vpsA 208 :LNPISK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28290 # 1crzA.13.47 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)G13 (1crzA)R54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1crzA)Q58 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1crzA)S61 because Y (epsilon') conformation "forbidden" or filtered. T0506 14 :TKI 1crzA 55 :LPQ T0506 18 :PS 1crzA 59 :PG T0506 21 :G 1crzA 62 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=28293 # 1q7lA.13.89 read from T0506.t04.many.frag # found chain 1q7lA in training set Warning: unaligning (T0506)G13 (1q7lA)H90 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 1q7lA 91 :WSHDPFEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28294 # 1gyxA.13.64 read from T0506.t04.many.frag # found chain 1gyxA in training set Warning: unaligning (T0506)G13 (1gyxA)A65 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 1gyxA 66 :LIKKPGYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28295 # 1wteA.13.31 read from T0506.t04.many.frag # found chain 1wteA in template set T0506 13 :GTKIEPSAG 1wteA 32 :TMSINPFMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28296 # 2pspA.13.14 read from T0506.t04.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)G13 (2pspA)N15 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 2pspA 16 :RVNCGFPG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28297 # 1qo7A.13.44 read from T0506.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0506)P18 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0506 13 :GTKIE 1qo7A 47 :SLQAD T0506 19 :SAG 1qo7A 53 :RFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28299 # 1mtyB.13.30 read from T0506.t04.many.frag # found chain 1mtyB in training set T0506 13 :GTKIEPSAG 1mtyB 36 :GYFVTPRWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28300 1m4uA expands to /projects/compbio/data/pdb/1m4u.pdb.gz 1m4uA:# 1m4uA.13.20 read from T0506.t04.many.frag # adding 1m4uA to template set # found chain 1m4uA in template set Warning: unaligning (T0506)K15 (1m4uA)H49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1m4uA)P50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1m4uA)D55 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GT 1m4uA 47 :IE T0506 17 :EPSA 1m4uA 51 :DPIF Number of specific fragments extracted= 2 number of extra gaps= 2 total=28302 # 1ds1A.13.74 read from T0506.t04.many.frag # found chain 1ds1A in training set Warning: unaligning (T0506)G13 (1ds1A)D75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1ds1A)T79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1ds1A)S82 because Y (epsilon') conformation "forbidden" or filtered. T0506 14 :TKI 1ds1A 76 :LPT T0506 18 :PS 1ds1A 80 :PS T0506 21 :G 1ds1A 83 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=28305 # 1w33A.13.37 read from T0506.t04.many.frag # found chain 1w33A in template set T0506 13 :GTKIEPSAG 1w33A 107 :TFKVGPYDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28306 # 1yllA.13.12 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)G13 (1yllA)D11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yllA)G22 T0506 14 :TKIE 1yllA 12 :YPRM Number of specific fragments extracted= 1 number of extra gaps= 1 total=28307 2cb5A expands to /projects/compbio/data/pdb/2cb5.pdb.gz 2cb5A:Skipped atom 305, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 522, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 524, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1656, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1659, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1909, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1911, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1913, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1915, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1917, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 1919, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2504, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2506, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2508, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2510, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2726, because occupancy 0.500 <= existing 0.500 in 2cb5A Skipped atom 2728, because occupancy 0.500 <= existing 0.500 in 2cb5A # 2cb5A.13.162 read from T0506.t04.many.frag # adding 2cb5A to template set # found chain 2cb5A in template set Warning: unaligning (T0506)G21 (2cb5A)E172 because G (3-10) conformation "forbidden" or filtered. T0506 13 :GTKIEPSA 2cb5A 164 :CFPESYTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28308 # 1pi1A.13.99 read from T0506.t04.many.frag # found chain 1pi1A in template set Warning: unaligning (T0506)G21 (1pi1A)P118 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKIEPSA 1pi1A 110 :LFPSKIGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=28309 # 1eybA.13.112 read from T0506.t04.many.frag # found chain 1eybA in template set Warning: unaligning (T0506)K15 (1eybA)D89 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GT 1eybA 87 :EV T0506 16 :IEPSAG 1eybA 90 :PDPNQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28311 # 2d28C.13.70 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)E17 (2d28C)T75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2d28C)M79 Warning: unaligning (T0506)G21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2d28C)M79 T0506 13 :GTKI 2d28C 71 :QLGD T0506 18 :PS 2d28C 76 :PP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28313 # 1qsgA.13.101 read from T0506.t04.many.frag # found chain 1qsgA in training set Warning: unaligning (T0506)I16 (1qsgA)G102 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1qsgA)D103 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTK 1qsgA 99 :QLD T0506 18 :PSAG 1qsgA 104 :YVNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28315 # 1d8hA.13.9 read from T0506.t04.many.frag # found chain 1d8hA in template set Warning: unaligning (T0506)K15 because of BadResidue code BAD_PEPTIDE in next template residue (1d8hA)W251 Warning: unaligning (T0506)I16 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)W251 Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE at template residue (1d8hA)K252 T0506 13 :GT 1d8hA 248 :AQ T0506 18 :PSAG 1d8hA 253 :PTIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28317 # 1lwbA.13.46 read from T0506.t04.many.frag # found chain 1lwbA in training set Warning: unaligning (T0506)G13 (1lwbA)Q47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1lwbA)F55 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKIEPSA 1lwbA 48 :APDNPFG Number of specific fragments extracted= 1 number of extra gaps= 2 total=28318 # 1cnv.13.51 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)K15 (1cnv)C54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)S57 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)S57 T0506 13 :GT 1cnv 52 :GV T0506 16 :I 1cnv 55 :G T0506 19 :SAG 1cnv 58 :VGN Number of specific fragments extracted= 3 number of extra gaps= 2 total=28321 # 1nv8A.13.51 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nv8A)L56 Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nv8A)L56 Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE at template residue (1nv8A)G57 Warning: unaligning (T0506)G21 (1nv8A)V58 because E (beta_S) conformation "forbidden" or filtered. T0506 13 :GTKIE 1nv8A 50 :DLFLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28322 # 1l2wI.13.40 read from T0506.t04.many.frag # found chain 1l2wI in template set Warning: unaligning (T0506)G13 (1l2wI)S57 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1l2wI)L63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1l2wI)S65 because Y (epsilon') conformation "forbidden" or filtered. T0506 14 :TKIEP 1l2wI 58 :RIIER T0506 20 :A 1l2wI 64 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=28324 # 1fcdA.13.119 read from T0506.t04.many.frag # found chain 1fcdA in template set Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (1fcdA)K129 T0506 13 :GTKIEPSA 1fcdA 120 :AAAKLPHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28325 # 1reqB.13.78 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)E17 (1reqB)K84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1reqB)G86 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)G86 Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE at template residue (1reqB)Y87 Warning: unaligning (T0506)G21 (1reqB)P88 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKI 1reqB 80 :DAPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28326 # 1t92A.13.41 read from T0506.t04.many.frag # found chain 1t92A in training set Warning: unaligning (T0506)E17 (1t92A)A70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1t92A)E74 because P (beta_P) conformation "forbidden" or filtered. T0506 13 :GTKI 1t92A 66 :ALVS T0506 18 :PSA 1t92A 71 :PSA Number of specific fragments extracted= 2 number of extra gaps= 2 total=28328 # 1wraA.13.45 read from T0506.t04.many.frag # found chain 1wraA in template set Warning: unaligning (T0506)E17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)E77 Warning: unaligning (T0506)P18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wraA)E77 Warning: unaligning (T0506)G21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wraA)T81 T0506 13 :GTKI 1wraA 72 :RYPW T0506 19 :SA 1wraA 78 :GI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28330 # 1m4uA.14.21 read from T0506.t04.many.frag # found chain 1m4uA in template set Warning: unaligning (T0506)K15 (1m4uA)H49 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :T 1m4uA 48 :E T0506 16 :IEPSAGA 1m4uA 50 :PDPIFDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28332 # 1qo7A.14.45 read from T0506.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0506)P18 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0506 14 :TKIE 1qo7A 48 :LQAD T0506 19 :SAGA 1qo7A 53 :RFGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28334 # 1z70X.14.128 read from T0506.t04.many.frag # found chain 1z70X in template set T0506 14 :TKIEPSAGA 1z70X 1201 :RPDHPVLHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28335 # 1mtyB.14.31 read from T0506.t04.many.frag # found chain 1mtyB in training set Warning: unaligning (T0506)A20 (1mtyB)W43 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKIEPS 1mtyB 37 :YFVTPR T0506 21 :GA 1mtyB 44 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28337 # 1w33A.14.38 read from T0506.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)A22 (1w33A)I116 because E (beta_S) conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 1w33A 108 :FKVGPYDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28338 # 1gyxA.14.65 read from T0506.t04.many.frag # found chain 1gyxA in training set T0506 14 :TKIEPSAGA 1gyxA 66 :LIKKPGYSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28339 # 1q7lA.14.90 read from T0506.t04.many.frag # found chain 1q7lA in training set T0506 14 :TKIEPSAGA 1q7lA 91 :WSHDPFEAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28340 # 1vpsA.14.174 read from T0506.t04.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)K15 (1vpsA)V207 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 (1vpsA)N209 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1vpsA)K213 because E (beta_S) conformation "forbidden" or filtered. T0506 14 :T 1vpsA 206 :Q T0506 16 :I 1vpsA 208 :L T0506 18 :PSA 1vpsA 210 :PIS T0506 22 :A 1vpsA 214 :A Number of specific fragments extracted= 4 number of extra gaps= 3 total=28344 # 1fl0A.14.106 read from T0506.t04.many.frag # found chain 1fl0A in training set Warning: unaligning (T0506)T14 (1fl0A)F256 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1fl0A)E263 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPSA 1fl0A 257 :PGEPDK T0506 22 :A 1fl0A 264 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=28346 # 1pi1A.14.100 read from T0506.t04.many.frag # found chain 1pi1A in template set Warning: unaligning (T0506)G21 (1pi1A)P118 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKIEPSA 1pi1A 111 :FPSKIGV T0506 22 :A 1pi1A 119 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=28348 2f6uA expands to /projects/compbio/data/pdb/2f6u.pdb.gz 2f6uA:Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 207, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 667, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 673, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 978, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 980, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 982, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 984, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 986, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 988, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 990, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 992, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1297, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1299, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1301, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1303, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1305, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1307, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1309, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1311, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1385, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1387, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1389, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1391, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1393, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1395, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1529, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1531, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1752, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1754, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1756, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1758, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1760, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1762, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1764, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1891, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1893, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1895, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1897, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1899, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1901, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1903, because occupancy 0.500 <= existing 0.500 in 2f6uA # 2f6uA.14.12 read from T0506.t04.many.frag # adding 2f6uA to template set # found chain 2f6uA in template set Warning: unaligning (T0506)G21 (2f6uA)T1017 because N (gamma') conformation "forbidden" or filtered. T0506 14 :TKIEPSA 2f6uA 1010 :TKLDPDR T0506 22 :A 2f6uA 1018 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=28350 # 1iicA.14.34 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 14 :TKIEPSAGA 1iicA 68 :ISDKPLPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28351 # 2fhpA.14.18 read from T0506.t04.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)K15 (2fhpA)D17 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (2fhpA)T21 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :T 2fhpA 16 :L T0506 16 :IE 2fhpA 18 :GD T0506 20 :A 2fhpA 22 :R T0506 22 :A 2fhpA 24 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=28355 # 2cb5A.14.163 read from T0506.t04.many.frag # found chain 2cb5A in template set Warning: unaligning (T0506)A22 (2cb5A)A173 because D (zeta) conformation "forbidden" or filtered. T0506 14 :TKIEPSAG 2cb5A 165 :FPESYTTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28356 # 1wteA.14.32 read from T0506.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0506)K15 (1wteA)S34 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :T 1wteA 33 :M T0506 16 :IEPSAGA 1wteA 35 :INPFMTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28358 # 1oqvA.14.46 read from T0506.t04.many.frag # found chain 1oqvA in training set Warning: unaligning (T0506)A20 (1oqvA)T60 because D (zeta) conformation "forbidden" or filtered. T0506 14 :TKIEPS 1oqvA 54 :LGNYPA T0506 21 :GA 1oqvA 61 :AD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28360 # 1l2wI.14.41 read from T0506.t04.many.frag # found chain 1l2wI in template set Warning: unaligning (T0506)G21 (1l2wI)S65 because Y (epsilon') conformation "forbidden" or filtered. T0506 14 :TKIEPSA 1l2wI 58 :RIIERLS T0506 22 :A 1l2wI 66 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=28362 1vqoN expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoN:# 1vqoN.14.0 read from T0506.t04.many.frag # adding 1vqoN to template set # found chain 1vqoN in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1vqoN)A1 Warning: unaligning (T0506)E17 (1vqoN)G3 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1vqoN)K7 because N (gamma') conformation "forbidden" or filtered. T0506 16 :I 1vqoN 2 :T T0506 18 :PSA 1vqoN 4 :PRY T0506 22 :A 1vqoN 8 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=28365 # 2pspA.14.15 read from T0506.t04.many.frag # found chain 2pspA in template set Warning: unaligning (T0506)K15 (2pspA)V17 because E (beta_S) conformation "forbidden" or filtered. T0506 14 :T 2pspA 16 :R T0506 16 :IEPSAGA 2pspA 18 :NCGFPGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28367 1orjA expands to /projects/compbio/data/pdb/1orj.pdb.gz 1orjA:# 1orjA.14.6 read from T0506.t04.many.frag # adding 1orjA to template set # found chain 1orjA in template set Warning: unaligning (T0506)E17 (1orjA)Q1010 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)M1012 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)M1012 Warning: unaligning (T0506)G21 (1orjA)E1014 because G (3-10) conformation "forbidden" or filtered. T0506 14 :TKI 1orjA 1007 :AYF T0506 20 :A 1orjA 1013 :V T0506 22 :A 1orjA 1015 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=28370 # 1cnv.14.52 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)K15 (1cnv)C54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1cnv)G55 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)S57 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)S57 Warning: unaligning (T0506)A20 (1cnv)G59 because L (left) conformation "forbidden" or filtered. T0506 14 :T 1cnv 53 :V T0506 19 :S 1cnv 58 :V T0506 21 :GA 1cnv 60 :NP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28373 # 1w6gA.14.4 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1w6gA)A9 Warning: unaligning (T0506)S19 (1w6gA)F12 because G (3-10) conformation "forbidden" or filtered. T0506 17 :EP 1w6gA 10 :SP T0506 20 :AGA 1w6gA 13 :RLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28375 # 1lwbA.14.47 read from T0506.t04.many.frag # found chain 1lwbA in training set Warning: unaligning (T0506)K15 (1lwbA)P49 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1lwbA)G54 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1lwbA)F55 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :T 1lwbA 48 :A T0506 16 :IEPS 1lwbA 50 :DNPF T0506 22 :A 1lwbA 56 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=28378 # 1muwA.14.97 read from T0506.t04.many.frag # found chain 1muwA in training set Warning: unaligning (T0506)E17 (1muwA)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1muwA)A105 because P (beta_P) conformation "forbidden" or filtered. T0506 14 :TKI 1muwA 98 :FKD T0506 18 :PSA 1muwA 102 :GFT T0506 22 :A 1muwA 106 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=28381 # 1p30A.14.43 read from T0506.t04.many.frag # found chain 1p30A in template set T0506 14 :TKIEPSAGA 1p30A 43 :KFRNPTVAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28382 # 1lvmA.14.11 read from T0506.t04.many.frag # found chain 1lvmA in training set Warning: unaligning (T0506)K15 (1lvmA)F5 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1lvmA)Y11 because G (3-10) conformation "forbidden" or filtered. T0506 14 :T 1lvmA 4 :L T0506 16 :IEPSA 1lvmA 6 :KGPRD T0506 22 :A 1lvmA 12 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=28385 # 1kaeA.14.19 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)A20 (1kaeA)I26 because D (zeta) conformation "forbidden" or filtered. T0506 14 :TKIEPS 1kaeA 20 :LLMRPA T0506 21 :GA 1kaeA 27 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28387 # 1ds1A.14.75 read from T0506.t04.many.frag # found chain 1ds1A in training set Warning: unaligning (T0506)A20 (1ds1A)S82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1ds1A)T83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ds1A)P84 because C (cis) conformation "forbidden" or filtered. T0506 14 :TKIEPS 1ds1A 76 :LPTTPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28388 # 1zbsA.14.28 read from T0506.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0506)T14 (1zbsA)S29 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I16 (1zbsA)I31 because L (left) conformation "forbidden" or filtered. T0506 15 :K 1zbsA 30 :G T0506 17 :EPSAGA 1zbsA 32 :NPFQQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=28390 # 1crzA.14.48 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)A20 (1crzA)S61 because Y (epsilon') conformation "forbidden" or filtered. T0506 14 :TKIEPS 1crzA 55 :LPQQPG T0506 21 :GA 1crzA 62 :AQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28392 # 2f6uA.15.13 read from T0506.t04.many.frag # found chain 2f6uA in template set Warning: unaligning (T0506)K15 (2f6uA)K1011 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSAGAP 2f6uA 1012 :LDPDRTNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=28393 # 1m4uA.15.22 read from T0506.t04.many.frag # found chain 1m4uA in template set Warning: unaligning (T0506)I16 (1m4uA)P50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1m4uA)K57 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :K 1m4uA 49 :H T0506 17 :EPSAGA 1m4uA 51 :DPIFDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28395 # 1qo7A.15.46 read from T0506.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0506)P18 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1qo7A)F54 because G (3-10) conformation "forbidden" or filtered. T0506 15 :KIE 1qo7A 49 :QAD T0506 19 :S 1qo7A 53 :R T0506 21 :GAP 1qo7A 55 :GIT Number of specific fragments extracted= 3 number of extra gaps= 2 total=28398 # 1z70X.15.129 read from T0506.t04.many.frag # found chain 1z70X in template set Warning: unaligning (T0506)A20 (1z70X)L1207 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPS 1z70X 1202 :PDHPV T0506 21 :GAP 1z70X 1208 :HVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28400 # 1w33A.15.39 read from T0506.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPSAGA 1w33A 109 :KVGPYDLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28401 # 1mtyB.15.32 read from T0506.t04.many.frag # found chain 1mtyB in training set T0506 15 :KIEPSAGAP 1mtyB 38 :FVTPRWKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28402 # 2fhpA.15.19 read from T0506.t04.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2fhpA)T24 because D (zeta) conformation "forbidden" or filtered. T0506 15 :KIE 2fhpA 17 :DGD T0506 19 :SAG 2fhpA 21 :TRP T0506 23 :P 2fhpA 25 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=28405 # 1pi1A.15.101 read from T0506.t04.many.frag # found chain 1pi1A in template set T0506 15 :KIEPSAGAP 1pi1A 112 :PSKIGVPFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28406 # 1oqvA.15.47 read from T0506.t04.many.frag # found chain 1oqvA in training set Warning: unaligning (T0506)K15 (1oqvA)G55 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1oqvA)T60 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1oqvA)D62 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :IEPS 1oqvA 56 :NYPA T0506 21 :G 1oqvA 61 :A T0506 23 :P 1oqvA 63 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=28409 # 1orjA.15.7 read from T0506.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0506)E17 (1orjA)Q1010 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)M1012 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)M1012 Warning: unaligning (T0506)G21 (1orjA)E1014 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1orjA)A1016 because G (3-10) conformation "forbidden" or filtered. T0506 15 :KI 1orjA 1008 :YF T0506 20 :A 1orjA 1013 :V T0506 22 :A 1orjA 1015 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=28412 # 1bcpD.15.52 read from T0506.t04.many.frag # found chain 1bcpD in template set Warning: unaligning (T0506)P18 (1bcpD)L56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1bcpD)K57 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE in next template residue (1bcpD)P59 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE at template residue (1bcpD)P59 Warning: unaligning (T0506)A22 (1bcpD)G60 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1bcpD)S61 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIE 1bcpD 53 :GKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28413 # 1gyxA.15.66 read from T0506.t04.many.frag # found chain 1gyxA in training set Warning: unaligning (T0506)E17 (1gyxA)K69 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1gyxA)S73 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KI 1gyxA 67 :IK T0506 18 :PSA 1gyxA 70 :PGY T0506 22 :AP 1gyxA 74 :MN Number of specific fragments extracted= 3 number of extra gaps= 2 total=28416 # 1fl0A.15.107 read from T0506.t04.many.frag # found chain 1fl0A in training set T0506 15 :KIEPSAGAP 1fl0A 257 :PGEPDKELN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28417 # 1l2wI.15.42 read from T0506.t04.many.frag # found chain 1l2wI in template set Warning: unaligning (T0506)G21 (1l2wI)S65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1l2wI)V66 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPSA 1l2wI 59 :IIERLS T0506 23 :P 1l2wI 67 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=28419 # 2cb5A.15.164 read from T0506.t04.many.frag # found chain 2cb5A in template set Warning: unaligning (T0506)G21 (2cb5A)E172 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2cb5A)A173 because D (zeta) conformation "forbidden" or filtered. T0506 15 :KIEPSA 2cb5A 166 :PESYTT T0506 23 :P 2cb5A 174 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=28421 # 1x6oA.15.126 read from T0506.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)P23 (1x6oA)D127 because D (zeta) conformation "forbidden" or filtered. T0506 15 :KIEPSAGA 1x6oA 119 :REDLDMPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=28422 # 1kaeA.15.20 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)E17 (1kaeA)R23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1kaeA)S27 because G (3-10) conformation "forbidden" or filtered. T0506 15 :KI 1kaeA 21 :LM T0506 18 :PSA 1kaeA 24 :PAI T0506 22 :AP 1kaeA 28 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=28425 # 1ujcA.15.15 read from T0506.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)G21 (1ujcA)P22 because P (beta_P) conformation "forbidden" or filtered. T0506 15 :KIEPSA 1ujcA 16 :ASDSVR T0506 22 :AP 1ujcA 23 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28427 # 1vqoN.15.1 read from T0506.t04.many.frag # found chain 1vqoN in template set Warning: unaligning (T0506)K15 because first residue in template chain is (1vqoN)A1 Warning: unaligning (T0506)E17 (1vqoN)G3 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1vqoN)K7 because N (gamma') conformation "forbidden" or filtered. T0506 16 :I 1vqoN 2 :T T0506 18 :PSA 1vqoN 4 :PRY T0506 22 :AP 1vqoN 8 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=28430 # 1w6gA.15.5 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1w6gA)A9 Warning: unaligning (T0506)E17 (1w6gA)S10 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1w6gA)L14 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1w6gA 11 :PFR T0506 22 :AP 1w6gA 15 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28432 # 1xeoA.15.15 read from T0506.t04.many.frag # found chain 1xeoA in training set Warning: unaligning (T0506)E17 (1xeoA)K18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1xeoA)E22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1xeoA)N24 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KI 1xeoA 16 :VA T0506 18 :PSA 1xeoA 19 :PVE T0506 22 :A 1xeoA 23 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=28435 # 1zbsA.15.29 read from T0506.t04.many.frag # found chain 1zbsA in template set T0506 15 :KIEPSAGAP 1zbsA 30 :GINPFQQDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28436 # 1q7lA.15.91 read from T0506.t04.many.frag # found chain 1q7lA in training set Warning: unaligning (T0506)P23 (1q7lA)K100 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KIEPSAGA 1q7lA 92 :SHDPFEAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=28437 1n6jG expands to /projects/compbio/data/pdb/1n6j.pdb.gz 1n6jG:# 1n6jG.15.1 read from T0506.t04.many.frag # adding 1n6jG to template set # found chain 1n6jG in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1n6jG)S101 Warning: unaligning (T0506)A20 (1n6jG)G104 because T (delta_L) conformation "forbidden" or filtered. T0506 18 :PS 1n6jG 102 :PK T0506 21 :GAP 1n6jG 105 :SIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28439 # 1gkmA.15.372 read from T0506.t04.many.frag # found chain 1gkmA in training set Warning: unaligning (T0506)I16 (1gkmA)N374 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE in next template residue (1gkmA)G376 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE at template residue (1gkmA)G376 Warning: unaligning (T0506)P23 (1gkmA)F381 because G (3-10) conformation "forbidden" or filtered. T0506 15 :K 1gkmA 373 :E T0506 19 :SAGA 1gkmA 377 :VNSG Number of specific fragments extracted= 2 number of extra gaps= 2 total=28441 1k78A expands to /projects/compbio/data/pdb/1k78.pdb.gz 1k78A:Skipped atom 236, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 238, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 242, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 246, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 248, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 250, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 252, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 380, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 382, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 384, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 386, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 388, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 390, because occupancy 0.500 <= existing 0.500 in 1k78A Skipped atom 392, because occupancy 0.500 <= existing 0.500 in 1k78A # 1k78A.15.25 read from T0506.t04.many.frag # adding 1k78A to template set # found chain 1k78A in template set Warning: unaligning (T0506)K15 (1k78A)V26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1k78A)P32 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSA 1k78A 27 :FVNGR T0506 22 :AP 1k78A 33 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=28443 1fzcA expands to /projects/compbio/data/pdb/1fzc.pdb.gz 1fzcA:# 1fzcA.15.55 read from T0506.t04.many.frag # adding 1fzcA to template set # found chain 1fzcA in template set Warning: unaligning (T0506)I16 (1fzcA)R167 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1fzcA)D174 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :K 1fzcA 166 :S T0506 17 :EPSAGA 1fzcA 168 :ALAREV Number of specific fragments extracted= 2 number of extra gaps= 2 total=28445 # 1otjA.15.19 read from T0506.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0506)P18 (1otjA)L23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1otjA)P26 because P (beta_P) conformation "forbidden" or filtered. T0506 15 :KIE 1otjA 20 :GAD T0506 19 :SA 1otjA 24 :TR T0506 22 :AP 1otjA 27 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=28448 # 1gttA.15.209 read from T0506.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)E17 (1gttA)R212 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1gttA)L218 because E (beta_S) conformation "forbidden" or filtered. T0506 15 :KI 1gttA 210 :TT T0506 18 :PSAGA 1gttA 213 :KSFPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=28450 # 1cnv.15.53 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)K15 (1cnv)C54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E17 because of BadResidue code BAD_PEPTIDE in next template residue (1cnv)S57 Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE at template residue (1cnv)S57 Warning: unaligning (T0506)A20 (1cnv)G59 because L (left) conformation "forbidden" or filtered. T0506 16 :I 1cnv 55 :G T0506 19 :S 1cnv 58 :V T0506 21 :GAP 1cnv 60 :NPC Number of specific fragments extracted= 3 number of extra gaps= 3 total=28453 # 2f6uA.16.14 read from T0506.t04.many.frag # found chain 2f6uA in template set Warning: unaligning (T0506)E17 (2f6uA)D1013 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2f6uA)T1017 because N (gamma') conformation "forbidden" or filtered. T0506 16 :I 2f6uA 1012 :L T0506 18 :PSA 2f6uA 1014 :PDR T0506 22 :APF 2f6uA 1018 :NTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=28456 # 2fhpA.16.20 read from T0506.t04.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IE 2fhpA 18 :GD T0506 19 :SA 2fhpA 21 :TR T0506 22 :APF 2fhpA 24 :TTD Number of specific fragments extracted= 3 number of extra gaps= 2 total=28459 # 1m4uA.16.23 read from T0506.t04.many.frag # found chain 1m4uA in template set Warning: unaligning (T0506)E17 (1m4uA)D51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1m4uA)K57 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :I 1m4uA 50 :P T0506 18 :PSAGA 1m4uA 52 :PIFDP T0506 24 :F 1m4uA 58 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=28462 # 1qo7A.16.47 read from T0506.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0506)P18 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. T0506 16 :IE 1qo7A 50 :AD T0506 19 :SAGAPF 1qo7A 53 :RFGITS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28464 # 1ujcA.16.16 read from T0506.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)I16 (1ujcA)S17 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1ujcA)V20 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ujcA)L23 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EP 1ujcA 18 :DS T0506 20 :AG 1ujcA 21 :RP T0506 23 :PF 1ujcA 24 :TT Number of specific fragments extracted= 3 number of extra gaps= 3 total=28467 # 1w33A.16.40 read from T0506.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IEPSAGA 1w33A 110 :VGPYDLI T0506 24 :F 1w33A 118 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=28469 # 1xeoA.16.16 read from T0506.t04.many.frag # found chain 1xeoA in training set Warning: unaligning (T0506)S19 (1xeoA)V20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1xeoA)N24 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IEP 1xeoA 17 :AKP T0506 20 :AGA 1xeoA 21 :EEV T0506 24 :F 1xeoA 25 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=28472 # 1otjA.16.20 read from T0506.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0506)P18 (1otjA)L23 because G (3-10) conformation "forbidden" or filtered. T0506 16 :IE 1otjA 21 :AD T0506 19 :SAGAPF 1otjA 24 :TRPLSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28474 # 1mtyB.16.33 read from T0506.t04.many.frag # found chain 1mtyB in training set T0506 16 :IEPSAGAPF 1mtyB 39 :VTPRWKRLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28475 # 1kaeA.16.21 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)E17 (1kaeA)R23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1kaeA)I26 because D (zeta) conformation "forbidden" or filtered. T0506 16 :I 1kaeA 22 :M T0506 18 :PS 1kaeA 24 :PA T0506 21 :GAPF 1kaeA 27 :SASE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28478 # 1x6oA.16.127 read from T0506.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)P23 (1x6oA)D127 because D (zeta) conformation "forbidden" or filtered. T0506 16 :IEPSAGA 1x6oA 120 :EDLDMPP T0506 24 :F 1x6oA 128 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=28480 # 1pi1A.16.102 read from T0506.t04.many.frag # found chain 1pi1A in template set Warning: unaligning (T0506)G21 (1pi1A)P118 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSA 1pi1A 113 :SKIGV T0506 22 :APF 1pi1A 119 :FPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28482 # 1bcpD.16.53 read from T0506.t04.many.frag # found chain 1bcpD in template set Warning: unaligning (T0506)P18 (1bcpD)L56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE in next template residue (1bcpD)P59 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE at template residue (1bcpD)P59 Warning: unaligning (T0506)A22 (1bcpD)G60 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1bcpD)S61 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IE 1bcpD 54 :KD T0506 19 :S 1bcpD 57 :K T0506 24 :F 1bcpD 62 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=28485 # 1k78A.16.26 read from T0506.t04.many.frag # found chain 1k78A in template set T0506 16 :IEPSAGAPF 1k78A 27 :FVNGRPLPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28486 # 1zbsA.16.30 read from T0506.t04.many.frag # found chain 1zbsA in template set T0506 16 :IEPSAGAPF 1zbsA 31 :INPFQQDRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28487 # 1l2wI.16.43 read from T0506.t04.many.frag # found chain 1l2wI in template set Warning: unaligning (T0506)G21 (1l2wI)S65 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :IEPSA 1l2wI 60 :IERLS T0506 22 :APF 1l2wI 66 :VAH Number of specific fragments extracted= 2 number of extra gaps= 1 total=28489 # 1oqvA.16.48 read from T0506.t04.many.frag # found chain 1oqvA in training set T0506 16 :IEPSAGAPF 1oqvA 56 :NYPATADAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28490 # 1orjA.16.8 read from T0506.t04.many.frag # found chain 1orjA in template set Warning: unaligning (T0506)P18 because of BadResidue code BAD_PEPTIDE in next template residue (1orjA)M1012 Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE at template residue (1orjA)M1012 Warning: unaligning (T0506)G21 (1orjA)E1014 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1orjA)A1016 because G (3-10) conformation "forbidden" or filtered. T0506 16 :IE 1orjA 1009 :FQ T0506 20 :A 1orjA 1013 :V T0506 22 :A 1orjA 1015 :T T0506 24 :F 1orjA 1017 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=28494 # 1n6jG.16.2 read from T0506.t04.many.frag # found chain 1n6jG in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1n6jG)S101 Warning: unaligning (T0506)A20 (1n6jG)G104 because T (delta_L) conformation "forbidden" or filtered. T0506 18 :PS 1n6jG 102 :PK T0506 21 :GAPF 1n6jG 105 :SISE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28496 # 2cb5A.16.165 read from T0506.t04.many.frag # found chain 2cb5A in template set Warning: unaligning (T0506)A22 (2cb5A)A173 because D (zeta) conformation "forbidden" or filtered. T0506 16 :IEPSAG 2cb5A 167 :ESYTTE T0506 23 :PF 2cb5A 174 :TR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28498 # 1oohA.16.18 read from T0506.t04.many.frag # found chain 1oohA in training set Warning: unaligning (T0506)A20 (1oohA)F21 because E (beta_S) conformation "forbidden" or filtered. T0506 16 :IEPS 1oohA 17 :CAPK T0506 21 :GAPF 1oohA 22 :KLKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28500 # 1mml.16.50 read from T0506.t04.many.frag # found chain 1mml in training set Warning: unaligning (T0506)G21 (1mml)P65 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IEPSA 1mml 60 :SIKQY T0506 22 :APF 1mml 66 :MSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28502 # 1z70X.16.130 read from T0506.t04.many.frag # found chain 1z70X in template set T0506 16 :IEPSAGAPF 1z70X 1203 :DHPVLHVSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28503 # 1k92A.16.44 read from T0506.t04.many.frag # found chain 1k92A in training set Warning: unaligning (T0506)I16 (1k92A)G45 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1k92A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 17 :EPSAG 1k92A 46 :QPDEE T0506 23 :PF 1k92A 52 :YD Number of specific fragments extracted= 2 number of extra gaps= 2 total=28505 # 1n9eA.16.57 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P18 (1n9eA)I60 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1n9eA)S63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1n9eA)L64 because P (beta_P) conformation "forbidden" or filtered. T0506 16 :IE 1n9eA 58 :TN T0506 19 :SA 1n9eA 61 :WT T0506 23 :PF 1n9eA 65 :AK Number of specific fragments extracted= 3 number of extra gaps= 2 total=28508 # 1s99A.16.16 read from T0506.t04.many.frag # found chain 1s99A in training set Warning: unaligning (T0506)A20 (1s99A)T21 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :IEPS 1s99A 17 :LYPM T0506 21 :GAPF 1s99A 22 :DDFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28510 # 1hbnC.16.23 read from T0506.t04.many.frag # found chain 1hbnC in training set Warning: unaligning (T0506)A20 (1hbnC)R29 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :IEPS 1hbnC 25 :LEKL T0506 21 :GAPF 1hbnC 30 :EISD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28512 # 1pswA.16.155 read from T0506.t04.many.frag # found chain 1pswA in template set T0506 16 :IEPSAGAPF 1pswA 156 :LWPQLQVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28513 # 1w6gA.16.6 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)I16 because first residue in template chain is (1w6gA)A9 Warning: unaligning (T0506)G21 (1w6gA)L14 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1w6gA)A15 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPSA 1w6gA 10 :SPFR T0506 23 :PF 1w6gA 16 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28515 # 1ik9C.16.15 read from T0506.t04.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)E17 (1ik9C)S764 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1ik9C)D768 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ik9C)T769 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1ik9C)D770 because Y (epsilon') conformation "forbidden" or filtered. T0506 16 :I 1ik9C 763 :D T0506 18 :PSA 1ik9C 765 :YFI T0506 24 :F 1ik9C 771 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28518 # 2f6uA.17.15 read from T0506.t04.many.frag # found chain 2f6uA in template set Warning: unaligning (T0506)G21 (2f6uA)T1017 because N (gamma') conformation "forbidden" or filtered. T0506 17 :EPSA 2f6uA 1013 :DPDR T0506 22 :APFE 2f6uA 1018 :NTDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28520 # 2fhpA.17.21 read from T0506.t04.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2fhpA)T24 because D (zeta) conformation "forbidden" or filtered. T0506 17 :E 2fhpA 19 :D T0506 19 :SA 2fhpA 21 :TR T0506 23 :PFE 2fhpA 25 :TDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=28523 # 1otjA.17.21 read from T0506.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0506)P18 (1otjA)L23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1otjA)P26 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :E 1otjA 22 :D T0506 19 :SA 1otjA 24 :TR T0506 22 :APFE 1otjA 27 :LSDN Number of specific fragments extracted= 3 number of extra gaps= 2 total=28526 # 1k78A.17.27 read from T0506.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0506)S19 (1k78A)G30 because T (delta_L) conformation "forbidden" or filtered. T0506 17 :EP 1k78A 28 :VN T0506 20 :AGAPFE 1k78A 31 :RPLPDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28528 # 1qo7A.17.48 read from T0506.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0506)P18 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1qo7A)G55 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1qo7A)I56 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :E 1qo7A 51 :D T0506 19 :SA 1qo7A 53 :RF T0506 23 :PFE 1qo7A 57 :TSE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28531 # 1kaeA.17.22 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)G21 (1kaeA)S27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1kaeA)A28 because L (left) conformation "forbidden" or filtered. T0506 17 :EPSA 1kaeA 23 :RPAI T0506 23 :PFE 1kaeA 29 :SES Number of specific fragments extracted= 2 number of extra gaps= 1 total=28533 # 1n9eA.17.58 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P18 (1n9eA)I60 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1n9eA)S63 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :E 1n9eA 59 :N T0506 19 :SA 1n9eA 61 :WT T0506 22 :APFE 1n9eA 64 :LAKE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28536 # 1n6jG.17.3 read from T0506.t04.many.frag # found chain 1n6jG in template set Warning: unaligning (T0506)E17 because first residue in template chain is (1n6jG)S101 Warning: unaligning (T0506)G21 (1n6jG)S105 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1n6jG 102 :PKG T0506 22 :APFE 1n6jG 106 :ISEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28538 # 1ujcA.17.17 read from T0506.t04.many.frag # found chain 1ujcA in template set T0506 17 :EPSAGAPFE 1ujcA 18 :DSVRPLTTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28539 # 1x6oA.17.128 read from T0506.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)G21 (1x6oA)P125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1x6oA)D127 because D (zeta) conformation "forbidden" or filtered. T0506 17 :EPSA 1x6oA 121 :DLDM T0506 22 :A 1x6oA 126 :P T0506 24 :FE 1x6oA 128 :PA Number of specific fragments extracted= 3 number of extra gaps= 2 total=28542 # 1xeoA.17.17 read from T0506.t04.many.frag # found chain 1xeoA in training set Warning: unaligning (T0506)S19 (1xeoA)V20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1xeoA)N24 because E (beta_S) conformation "forbidden" or filtered. T0506 17 :EP 1xeoA 18 :KP T0506 20 :AGA 1xeoA 21 :EEV T0506 24 :FE 1xeoA 25 :AE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28545 # 1oohA.17.19 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 17 :EPSAGAPFE 1oohA 18 :APKFKLKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28546 # 1m4uA.17.24 read from T0506.t04.many.frag # found chain 1m4uA in template set Warning: unaligning (T0506)E17 (1m4uA)D51 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1m4uA)D55 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1m4uA)K57 because E (beta_S) conformation "forbidden" or filtered. T0506 18 :PSA 1m4uA 52 :PIF T0506 22 :A 1m4uA 56 :P T0506 24 :FE 1m4uA 58 :EK Number of specific fragments extracted= 3 number of extra gaps= 3 total=28549 # 1s29A.17.0 read from T0506.t04.many.frag # found chain 1s29A in training set Warning: unaligning (T0506)E17 because first residue in template chain is (1s29A)G1 T0506 18 :PSAGAPFE 1s29A 2 :SHMPLSSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28550 # 1pswA.17.156 read from T0506.t04.many.frag # found chain 1pswA in template set Warning: unaligning (T0506)E17 (1pswA)W157 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSAGAPFE 1pswA 158 :PQLQVSEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=28551 # 1w33A.17.41 read from T0506.t04.many.frag # found chain 1w33A in template set Warning: unaligning (T0506)G21 (1w33A)L115 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1w33A)I116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1w33A)D117 because E (beta_S) conformation "forbidden" or filtered. T0506 17 :EPSA 1w33A 111 :GPYD T0506 24 :FE 1w33A 118 :ED Number of specific fragments extracted= 2 number of extra gaps= 1 total=28553 2bpa1 expands to /projects/compbio/data/pdb/2bpa.pdb.gz 2bpa1:# 2bpa1.17.184 read from T0506.t04.many.frag # adding 2bpa1 to template set # found chain 2bpa1 in template set Warning: unaligning (T0506)S19 because of BadResidue code BAD_PEPTIDE in next template residue (2bpa1)T188 Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE at template residue (2bpa1)T188 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE in next template residue (2bpa1)I190 Warning: unaligning (T0506)A22 because of BadResidue code BAD_PEPTIDE at template residue (2bpa1)I190 T0506 17 :EP 2bpa1 185 :TS T0506 23 :PFE 2bpa1 191 :DIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28555 # 1bcpD.17.54 read from T0506.t04.many.frag # found chain 1bcpD in template set Warning: unaligning (T0506)P18 (1bcpD)L56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 because of BadResidue code BAD_PEPTIDE in next template residue (1bcpD)P59 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE at template residue (1bcpD)P59 Warning: unaligning (T0506)P23 (1bcpD)S61 because E (beta_S) conformation "forbidden" or filtered. T0506 17 :E 1bcpD 55 :D T0506 19 :S 1bcpD 57 :K T0506 22 :A 1bcpD 60 :G T0506 24 :FE 1bcpD 62 :SP Number of specific fragments extracted= 4 number of extra gaps= 3 total=28559 # 1uasA.17.247 read from T0506.t04.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)G21 (1uasA)S252 because D (zeta) conformation "forbidden" or filtered. T0506 17 :EPSA 1uasA 248 :CDVR T0506 22 :APFE 1uasA 253 :MSQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28561 # 1zbsA.17.31 read from T0506.t04.many.frag # found chain 1zbsA in template set T0506 17 :EPSAGAPFE 1zbsA 32 :NPFQQDRNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28562 1p2xA expands to /projects/compbio/data/pdb/1p2x.pdb.gz 1p2xA:# 1p2xA.17.128 read from T0506.t04.many.frag # adding 1p2xA to template set # found chain 1p2xA in template set Warning: unaligning (T0506)S19 (1p2xA)N162 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1p2xA)S164 because E (beta_S) conformation "forbidden" or filtered. T0506 17 :EP 1p2xA 160 :DE T0506 20 :A 1p2xA 163 :L T0506 22 :APFE 1p2xA 165 :FTDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=28565 # 1mml.17.51 read from T0506.t04.many.frag # found chain 1mml in training set T0506 17 :EPSAGAPFE 1mml 61 :IKQYPMSQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28566 # 1ik9C.17.16 read from T0506.t04.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)E17 (1ik9C)S764 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ik9C)T769 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1ik9C)D770 because Y (epsilon') conformation "forbidden" or filtered. T0506 18 :PSAG 1ik9C 765 :YFID T0506 24 :FE 1ik9C 771 :LN Number of specific fragments extracted= 2 number of extra gaps= 2 total=28568 # 1h1nA.17.60 read from T0506.t04.many.frag # found chain 1h1nA in training set Warning: unaligning (T0506)A20 (1h1nA)G64 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1h1nA)S65 because P (beta_P) conformation "forbidden" or filtered. T0506 17 :EPS 1h1nA 61 :SMT T0506 22 :APFE 1h1nA 66 :PDPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28570 # 1nofA.17.23 read from T0506.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0506)S19 (1nofA)I56 because Y (epsilon') conformation "forbidden" or filtered. T0506 17 :EP 1nofA 54 :GW T0506 20 :AGAPFE 1nofA 57 :NDLTTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28572 # 1euvA.17.1 read from T0506.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0506)E17 (1euvA)S402 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P18 (1euvA)L403 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1euvA)E406 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1euvA 404 :VP T0506 22 :APFE 1euvA 407 :LNEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28574 # 1k92A.17.45 read from T0506.t04.many.frag # found chain 1k92A in training set Warning: unaligning (T0506)A22 (1k92A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 17 :EPSAG 1k92A 46 :QPDEE T0506 23 :PFE 1k92A 52 :YDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28576 # 2cb5A.17.166 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 17 :EPSAGAPFE 2cb5A 168 :SYTTEATRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28577 # 1vk9A.17.7 read from T0506.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0506)P18 (1vk9A)H-3 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1vk9A)H-2 because D (zeta) conformation "forbidden" or filtered. T0506 17 :E 1vk9A -4 :H T0506 20 :AGAPFE 1vk9A -1 :HHVEKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28579 1b0nB expands to /projects/compbio/data/pdb/1b0n.pdb.gz 1b0nB:# 1b0nB.17.5 read from T0506.t04.many.frag # adding 1b0nB to template set # found chain 1b0nB in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1b0nB)F9 T0506 21 :GAPFE 1b0nB 10 :ELDQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28580 # 2f6uA.18.16 read from T0506.t04.many.frag # found chain 2f6uA in template set T0506 18 :PSAGAPFEA 2f6uA 1014 :PDRTNTDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28581 # 2fhpA.18.22 read from T0506.t04.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)P18 (2fhpA)N20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (2fhpA)T24 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SA 2fhpA 21 :TR T0506 23 :PFEA 2fhpA 25 :TDKV Number of specific fragments extracted= 2 number of extra gaps= 2 total=28583 # 1n9eA.18.59 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P18 (1n9eA)I60 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SAGAPFEA 1n9eA 61 :WTSLAKEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28584 # 1kaeA.18.23 read from T0506.t04.many.frag # found chain 1kaeA in training set T0506 18 :PSAGAPFEA 1kaeA 24 :PAISASESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28585 # 1otjA.18.22 read from T0506.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0506)P18 (1otjA)L23 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1otjA)P26 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1otjA 24 :TR T0506 22 :APFEA 1otjA 27 :LSDNQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=28587 # 1c7nA.18.62 read from T0506.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)G21 (1c7nA)G66 because Y (epsilon') conformation "forbidden" or filtered. T0506 18 :PSA 1c7nA 63 :GYT T0506 22 :APFEA 1c7nA 67 :PTEEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=28589 # 1k78A.18.28 read from T0506.t04.many.frag # found chain 1k78A in template set T0506 18 :PSAGAPFEA 1k78A 29 :NGRPLPDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28590 # 1n6jG.18.4 read from T0506.t04.many.frag # found chain 1n6jG in template set Warning: unaligning (T0506)G21 (1n6jG)S105 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1n6jG 102 :PKG T0506 22 :APFEA 1n6jG 106 :ISEET Number of specific fragments extracted= 2 number of extra gaps= 1 total=28592 # 1x6oA.18.129 read from T0506.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)P23 (1x6oA)D127 because D (zeta) conformation "forbidden" or filtered. T0506 18 :PSAGA 1x6oA 122 :LDMPP T0506 24 :FEA 1x6oA 128 :PAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28594 # 1p2xA.18.129 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 18 :PSAGAPFEA 1p2xA 161 :ENLSFTDED Number of specific fragments extracted= 1 number of extra gaps= 0 total=28595 # 1oohA.18.20 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 18 :PSAGAPFEA 1oohA 19 :PKFKLKTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=28596 # 1xeoA.18.18 read from T0506.t04.many.frag # found chain 1xeoA in training set Warning: unaligning (T0506)G21 (1xeoA)E22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1xeoA)N24 because E (beta_S) conformation "forbidden" or filtered. T0506 18 :PSA 1xeoA 19 :PVE T0506 22 :A 1xeoA 23 :V T0506 24 :FEA 1xeoA 25 :AEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=28599 # 1euvA.18.2 read from T0506.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0506)P18 (1euvA)L403 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SAGAPFEA 1euvA 404 :VPELNEKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28600 # 1vk9A.18.8 read from T0506.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0506)P18 (1vk9A)H-3 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1vk9A)H0 because E (beta_S) conformation "forbidden" or filtered. T0506 19 :SA 1vk9A -2 :HH T0506 22 :APFEA 1vk9A 1 :VEKNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28602 # 1pswA.18.157 read from T0506.t04.many.frag # found chain 1pswA in template set Warning: unaligning (T0506)G21 (1pswA)Q161 because E (beta_S) conformation "forbidden" or filtered. T0506 18 :PSA 1pswA 158 :PQL T0506 22 :APFEA 1pswA 162 :VSEGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28604 # 1qo7A.18.49 read from T0506.t04.many.frag # found chain 1qo7A in training set Warning: unaligning (T0506)P18 (1qo7A)G52 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1qo7A)F54 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1qo7A)G55 because S (epsilon) conformation "forbidden" or filtered. T0506 19 :S 1qo7A 53 :R T0506 22 :APFEA 1qo7A 56 :ITSEW Number of specific fragments extracted= 2 number of extra gaps= 2 total=28606 # 1txlA.18.83 read from T0506.t04.many.frag # found chain 1txlA in training set Warning: unaligning (T0506)P18 (1txlA)D84 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SAGAPFEA 1txlA 85 :KTKTFAEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28607 # 1ik9C.18.17 read from T0506.t04.many.frag # found chain 1ik9C in template set Warning: unaligning (T0506)G21 (1ik9C)D768 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1ik9C)T769 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1ik9C)D770 because Y (epsilon') conformation "forbidden" or filtered. T0506 18 :PSA 1ik9C 765 :YFI T0506 24 :FEA 1ik9C 771 :LNQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28609 # 1ujcA.18.18 read from T0506.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)G21 (1ujcA)P22 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1ujcA 19 :SVR T0506 22 :APFEA 1ujcA 23 :LTTNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=28611 # 1uasA.18.248 read from T0506.t04.many.frag # found chain 1uasA in training set T0506 18 :PSAGAPFEA 1uasA 249 :DVRSMSQQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28612 1fjrA expands to /projects/compbio/data/pdb/1fjr.pdb.gz 1fjrA:# 1fjrA.18.81 read from T0506.t04.many.frag # adding 1fjrA to template set # found chain 1fjrA in template set T0506 18 :PSAGAPFEA 1fjrA 82 :CYDNMSDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28613 # 1t3tA.18.50 read from T0506.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)P18 (1t3tA)L43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1t3tA)P46 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1t3tA 44 :NA T0506 22 :APFEA 1t3tA 47 :LNDSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=28615 # 1nofA.18.24 read from T0506.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0506)A22 (1nofA)L59 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSAG 1nofA 55 :WIND T0506 23 :PFEA 1nofA 60 :TTEQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=28617 # 1tt8A.18.15 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)G21 (1tt8A)A19 because N (gamma') conformation "forbidden" or filtered. T0506 18 :PSA 1tt8A 16 :EIP T0506 22 :APFEA 1tt8A 20 :LDPQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28619 # 1mml.18.52 read from T0506.t04.many.frag # found chain 1mml in training set Warning: unaligning (T0506)G21 (1mml)P65 because P (beta_P) conformation "forbidden" or filtered. T0506 18 :PSA 1mml 62 :KQY T0506 22 :APFEA 1mml 66 :MSQEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28621 1wyzA expands to /projects/compbio/data/pdb/1wyz.pdb.gz 1wyzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wyzA.18.63 read from T0506.t04.many.frag # adding 1wyzA to template set # found chain 1wyzA in template set Warning: unaligning (T0506)P18 (1wyzA)L64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S19 (1wyzA)N65 because Y (epsilon') conformation "forbidden" or filtered. T0506 20 :AGAPFEA 1wyzA 66 :KHTSPED Number of specific fragments extracted= 1 number of extra gaps= 1 total=28622 1lj2A expands to /projects/compbio/data/pdb/1lj2.pdb.gz 1lj2A:# 1lj2A.18.44 read from T0506.t04.many.frag # adding 1lj2A to template set # found chain 1lj2A in template set T0506 18 :PSAGAPFEA 1lj2A 250 :RSMELDPEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28623 # 1no7A.18.151 read from T0506.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0506)P18 (1no7A)G602 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1no7A)A605 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SA 1no7A 603 :RH T0506 22 :APFEA 1no7A 606 :MAPAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=28625 # 1q6zA.18.180 read from T0506.t04.many.frag # found chain 1q6zA in training set Warning: unaligning (T0506)P18 (1q6zA)S181 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SAGAPFEA 1q6zA 182 :SVRLNDQD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28626 # 1rv9A.18.50 read from T0506.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0506)P18 (1rv9A)T51 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SAGAPFEA 1rv9A 52 :HVGDNPEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28627 # 2f6uA.19.17 read from T0506.t04.many.frag # found chain 2f6uA in template set Warning: unaligning (T0506)G21 (2f6uA)T1017 because N (gamma') conformation "forbidden" or filtered. T0506 19 :SA 2f6uA 1015 :DR T0506 22 :APFEAV 2f6uA 1018 :NTDEII Number of specific fragments extracted= 2 number of extra gaps= 1 total=28629 # 1n9eA.19.60 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)A22 (1n9eA)L64 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SAG 1n9eA 61 :WTS T0506 23 :PFEAV 1n9eA 65 :AKEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=28631 # 1c7nA.19.63 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 19 :SAGAPFEAV 1c7nA 64 :YTGPTEEYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28632 # 2fhpA.19.23 read from T0506.t04.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 2fhpA 21 :TR T0506 22 :APFEAV 2fhpA 24 :TTDKVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28634 # 1otjA.19.23 read from T0506.t04.many.frag # found chain 1otjA in template set Warning: unaligning (T0506)A22 (1otjA)L27 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SAG 1otjA 24 :TRP T0506 23 :PFEAV 1otjA 28 :SDNQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28636 # 1kaeA.19.24 read from T0506.t04.many.frag # found chain 1kaeA in training set T0506 19 :SAGAPFEAV 1kaeA 25 :AISASESIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28637 # 1p2xA.19.130 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 19 :SAGAPFEAV 1p2xA 162 :NLSFTDEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28638 # 1k78A.19.29 read from T0506.t04.many.frag # found chain 1k78A in template set Warning: unaligning (T0506)S19 (1k78A)G30 because T (delta_L) conformation "forbidden" or filtered. T0506 20 :AGAPFEAV 1k78A 31 :RPLPDVVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28639 2azeA expands to /projects/compbio/data/pdb/2aze.pdb.gz 2azeA:# 2azeA.19.115 read from T0506.t04.many.frag # adding 2azeA to template set # found chain 2azeA in template set Warning: unaligning (T0506)A20 (2azeA)G312 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2azeA)S313 because N (gamma') conformation "forbidden" or filtered. T0506 19 :S 2azeA 311 :S T0506 22 :APFEAV 2azeA 314 :CSAEDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28641 # 1vk9A.19.9 read from T0506.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0506)A22 (1vk9A)V1 because E (beta_S) conformation "forbidden" or filtered. T0506 19 :SAG 1vk9A -2 :HHH T0506 23 :PFEAV 1vk9A 2 :EKNLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28643 # 1txlA.19.84 read from T0506.t04.many.frag # found chain 1txlA in training set T0506 19 :SAGAPFEAV 1txlA 85 :KTKTFAEIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28644 # 1t3tA.19.51 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 19 :SAGAPFEAV 1t3tA 44 :NAPLNDSEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28645 1r7mA expands to /projects/compbio/data/pdb/1r7m.pdb.gz 1r7mA:# 1r7mA.19.25 read from T0506.t04.many.frag # adding 1r7mA to template set # found chain 1r7mA in template set T0506 19 :SAGAPFEAV 1r7mA 26 :LIELNIEQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28646 # 1n6jG.19.5 read from T0506.t04.many.frag # found chain 1n6jG in template set Warning: unaligning (T0506)A20 (1n6jG)G104 because T (delta_L) conformation "forbidden" or filtered. T0506 19 :S 1n6jG 103 :K T0506 21 :GAPFEAV 1n6jG 105 :SISEETK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28648 # 1xbiA.19.8 read from T0506.t04.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)G21 (1xbiA)K8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)F24 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0506)E25 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 T0506 19 :SA 1xbiA 6 :KF T0506 22 :AP 1xbiA 9 :VP T0506 26 :AV 1xbiA 13 :IQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=28651 # 1nofA.19.25 read from T0506.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0506)S19 (1nofA)I56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A20 (1nofA)N57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1nofA)D58 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAV 1nofA 59 :LTTEQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28652 # 1jftA.19.23 read from T0506.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)A20 (1jftA)R26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1jftA)F27 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :S 1jftA 25 :T T0506 22 :APFEAV 1jftA 28 :VAEETR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28654 # 1xo0A.19.114 read from T0506.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0506)G21 (1xo0A)A136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1xo0A)F137 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SA 1xo0A 134 :AL T0506 23 :PFEAV 1xo0A 138 :ERTDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=28656 # 1nv8A.19.56 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)S19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nv8A)L56 Warning: unaligning (T0506)A20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nv8A)L56 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE at template residue (1nv8A)G57 T0506 22 :APFEAV 1nv8A 58 :VSPTEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28657 # 2b8eA.19.103 read from T0506.t04.many.frag # found chain 2b8eA in template set Warning: unaligning (T0506)S19 (2b8eA)G510 because L (left) conformation "forbidden" or filtered. T0506 20 :AGAPFEAV 2b8eA 511 :VAVSNEVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28658 # 1no7A.19.152 read from T0506.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0506)G21 (1no7A)A605 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1no7A)M606 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1no7A 603 :RH T0506 23 :PFEAV 1no7A 607 :APATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=28660 # 1q6zA.19.181 read from T0506.t04.many.frag # found chain 1q6zA in training set T0506 19 :SAGAPFEAV 1q6zA 182 :SVRLNDQDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28661 # 1yc5A.19.162 read from T0506.t04.many.frag # found chain 1yc5A in template set T0506 19 :SAGAPFEAV 1yc5A 163 :GENLPQDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28662 1z3eB expands to /projects/compbio/data/pdb/1z3e.pdb.gz 1z3eB:# 1z3eB.19.45 read from T0506.t04.many.frag # adding 1z3eB to template set # found chain 1z3eB in template set T0506 19 :SAGAPFEAV 1z3eB 288 :VRNLGRKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28663 # 1x6oA.19.130 read from T0506.t04.many.frag # found chain 1x6oA in training set Warning: unaligning (T0506)G21 (1x6oA)P125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (1x6oA)D127 because D (zeta) conformation "forbidden" or filtered. T0506 19 :SA 1x6oA 123 :DM T0506 22 :A 1x6oA 126 :P T0506 24 :FEAV 1x6oA 128 :PALA Number of specific fragments extracted= 3 number of extra gaps= 2 total=28666 # 1fjrA.19.82 read from T0506.t04.many.frag # found chain 1fjrA in template set T0506 19 :SAGAPFEAV 1fjrA 83 :YDNMSDEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28667 # 1tt8A.19.16 read from T0506.t04.many.frag # found chain 1tt8A in training set T0506 19 :SAGAPFEAV 1tt8A 17 :IPALDPQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28668 2cs7A expands to /projects/compbio/data/pdb/2cs7.pdb.gz 2cs7A:Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 2cs7A Skipped atom 357, because occupancy 0.500 <= existing 0.500 in 2cs7A # 2cs7A.19.37 read from T0506.t04.many.frag # adding 2cs7A to template set # found chain 2cs7A in template set Warning: unaligning (T0506)G21 (2cs7A)E39 because G (3-10) conformation "forbidden" or filtered. T0506 19 :SA 2cs7A 37 :KN T0506 22 :APFEAV 2cs7A 40 :LSASEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28670 # 1euvA.19.3 read from T0506.t04.many.frag # found chain 1euvA in training set Warning: unaligning (T0506)G21 (1euvA)E406 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1euvA)L407 because P (beta_P) conformation "forbidden" or filtered. T0506 19 :SA 1euvA 404 :VP T0506 23 :PFEAV 1euvA 408 :NEKDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28672 # 1wyzA.19.64 read from T0506.t04.many.frag # found chain 1wyzA in template set Warning: unaligning (T0506)S19 (1wyzA)N65 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1wyzA)H67 because G (3-10) conformation "forbidden" or filtered. T0506 20 :A 1wyzA 66 :K T0506 22 :APFEAV 1wyzA 68 :TSPEDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=28674 # 1c7nA.20.64 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 20 :AGAPFEAVR 1c7nA 65 :TGPTEEYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28675 # 2f6uA.20.18 read from T0506.t04.many.frag # found chain 2f6uA in template set Warning: unaligning (T0506)G21 (2f6uA)T1017 because N (gamma') conformation "forbidden" or filtered. T0506 20 :A 2f6uA 1016 :R T0506 22 :APFEAVR 2f6uA 1018 :NTDEIIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28677 # 1n9eA.20.61 read from T0506.t04.many.frag # found chain 1n9eA in training set T0506 20 :AGAPFEAVR 1n9eA 62 :TSLAKEEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28678 # 1p2xA.20.131 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 20 :AGAPFEAVR 1p2xA 163 :LSFTDEDVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28679 # 1vk9A.20.10 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 20 :AGAPFEAVR 1vk9A -1 :HHVEKNLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28680 # 1xbiA.20.9 read from T0506.t04.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)A20 (1xbiA)F7 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1xbiA)K8 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1xbiA)V9 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F24 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0506)E25 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 T0506 23 :P 1xbiA 10 :P T0506 26 :AVR 1xbiA 13 :IQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=28682 # 1kaeA.20.25 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)G21 (1kaeA)S27 because G (3-10) conformation "forbidden" or filtered. T0506 20 :A 1kaeA 26 :I T0506 22 :APFEAVR 1kaeA 28 :ASESITR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28684 # 1otjA.20.24 read from T0506.t04.many.frag # found chain 1otjA in template set T0506 20 :AGAPFEAVR 1otjA 25 :RPLSDNQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28685 # 1xo0A.20.115 read from T0506.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0506)A22 (1xo0A)F137 because D (zeta) conformation "forbidden" or filtered. T0506 20 :AG 1xo0A 135 :LA T0506 23 :PFEAVR 1xo0A 138 :ERTDFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28687 # 1q52A.20.58 read from T0506.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0506)A20 (1q52A)N59 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1q52A)A60 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVR 1q52A 61 :FRPHTVD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28688 # 2azeA.20.116 read from T0506.t04.many.frag # found chain 2azeA in template set Warning: unaligning (T0506)A20 (2azeA)G312 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (2azeA)S313 because N (gamma') conformation "forbidden" or filtered. T0506 22 :APFEAVR 2azeA 314 :CSAEDLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28689 # 1nv8A.20.57 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)A20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nv8A)L56 Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE at template residue (1nv8A)G57 T0506 22 :APFEAVR 1nv8A 58 :VSPTEEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28690 # 2fhpA.20.24 read from T0506.t04.many.frag # found chain 2fhpA in template set Warning: unaligning (T0506)G21 (2fhpA)P23 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :A 2fhpA 22 :R T0506 22 :APFEAVR 2fhpA 24 :TTDKVKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28692 # 1jftA.20.24 read from T0506.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)A20 (1jftA)R26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1jftA)F27 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVR 1jftA 28 :VAEETRN Number of specific fragments extracted= 1 number of extra gaps= 1 total=28693 # 1r7mA.20.26 read from T0506.t04.many.frag # found chain 1r7mA in template set T0506 20 :AGAPFEAVR 1r7mA 27 :IELNIEQFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28694 # 1k78A.20.30 read from T0506.t04.many.frag # found chain 1k78A in template set T0506 20 :AGAPFEAVR 1k78A 31 :RPLPDVVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28695 # 1vliA.20.95 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)A22 (1vliA)M86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vliA)I91 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vliA)I91 T0506 20 :AG 1vliA 84 :ME T0506 23 :PFE 1vliA 87 :PAE T0506 28 :R 1vliA 92 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=28698 1hf8A expands to /projects/compbio/data/pdb/1hf8.pdb.gz 1hf8A:# 1hf8A.20.34 read from T0506.t04.many.frag # adding 1hf8A to template set # found chain 1hf8A in template set Warning: unaligning (T0506)A20 (1hf8A)M35 because Y (epsilon') conformation "forbidden" or filtered. T0506 21 :GAPFEAVR 1hf8A 36 :GPKKKHLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28699 # 1tt8A.20.17 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)G21 (1tt8A)A19 because N (gamma') conformation "forbidden" or filtered. T0506 20 :A 1tt8A 18 :P T0506 22 :APFEAVR 1tt8A 20 :LDPQLLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=28701 # 1z5oA.20.128 read from T0506.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0506)G21 (1z5oA)K120 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :A 1z5oA 119 :F T0506 22 :APFEAVR 1z5oA 121 :ADDKLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28703 1vqrA expands to /projects/compbio/data/pdb/1vqr.pdb.gz 1vqrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1584, because occupancy 0.350 <= existing 0.650 in 1vqrA Skipped atom 1586, because occupancy 0.350 <= existing 0.650 in 1vqrA Skipped atom 1588, because occupancy 0.350 <= existing 0.650 in 1vqrA Skipped atom 1590, because occupancy 0.350 <= existing 0.650 in 1vqrA # 1vqrA.20.27 read from T0506.t04.many.frag # adding 1vqrA to template set # found chain 1vqrA in template set Warning: unaligning (T0506)A20 (1vqrA)L16 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G21 (1vqrA)P17 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVR 1vqrA 18 :PLPDTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=28704 1b77A expands to /projects/compbio/data/pdb/1b77.pdb.gz 1b77A:# 1b77A.20.0 read from T0506.t04.many.frag # adding 1b77A to template set # found chain 1b77A in template set Warning: unaligning (T0506)A20 because first residue in template chain is (1b77A)M1 T0506 21 :GAPFEAVR 1b77A 2 :KLSKDTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28705 # 1t3tA.20.52 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 20 :AGAPFEAVR 1t3tA 45 :APLNDSEQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28706 # 1yc5A.20.163 read from T0506.t04.many.frag # found chain 1yc5A in template set Warning: unaligning (T0506)G21 (1yc5A)N165 because P (beta_P) conformation "forbidden" or filtered. T0506 20 :A 1yc5A 164 :E T0506 22 :APFEAVR 1yc5A 166 :LPQDALR Number of specific fragments extracted= 2 number of extra gaps= 1 total=28708 2bo4A expands to /projects/compbio/data/pdb/2bo4.pdb.gz 2bo4A:# 2bo4A.20.103 read from T0506.t04.many.frag # adding 2bo4A to template set # found chain 2bo4A in template set Warning: unaligning (T0506)P23 (2bo4A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0506 20 :AGA 2bo4A 104 :TSF T0506 24 :FEAVR 2bo4A 108 :PDWIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28710 # 1k7jA.20.9 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 20 :AGAPFEAVR 1k7jA 10 :DNPQQRLIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28711 # 1nofA.20.26 read from T0506.t04.many.frag # found chain 1nofA in training set T0506 20 :AGAPFEAVR 1nofA 57 :NDLTTEQIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28712 # 1no7A.20.153 read from T0506.t04.many.frag # found chain 1no7A in template set Warning: unaligning (T0506)A20 (1no7A)H604 because P (beta_P) conformation "forbidden" or filtered. T0506 21 :GAPFEAVR 1no7A 605 :AMAPATIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28713 # 1z3eB.20.46 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 20 :AGAPFEAVR 1z3eB 289 :RNLGRKSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28714 # 1ow4A.20.30 read from T0506.t04.many.frag # found chain 1ow4A in training set T0506 20 :AGAPFEAVR 1ow4A 20 :VSATEDDFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28715 # 1c7nA.21.65 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 21 :GAPFEAVRV 1c7nA 66 :GPTEEYKKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28716 # 1p2xA.21.132 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 21 :GAPFEAVRV 1p2xA 164 :SFTDEDVSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28717 # 1vk9A.21.11 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 21 :GAPFEAVRV 1vk9A 0 :HVEKNLLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28718 # 1xbiA.21.10 read from T0506.t04.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)F24 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0506)E25 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 T0506 21 :GAP 1xbiA 8 :KVP T0506 26 :AVRV 1xbiA 13 :IQKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=28720 # 1q52A.21.59 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 21 :GAPFEAVRV 1q52A 60 :AFRPHTVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28721 # 1n9eA.21.62 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)G21 (1n9eA)S63 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1n9eA 64 :LAKEEVQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28722 # 1jftA.21.25 read from T0506.t04.many.frag # found chain 1jftA in template set Warning: unaligning (T0506)G21 (1jftA)F27 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1jftA 28 :VAEETRNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28723 # 1nv8A.21.58 read from T0506.t04.many.frag # found chain 1nv8A in template set Warning: unaligning (T0506)G21 because of BadResidue code BAD_PEPTIDE at template residue (1nv8A)G57 T0506 22 :APFEAVRV 1nv8A 58 :VSPTEEKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28724 # 2f6uA.21.19 read from T0506.t04.many.frag # found chain 2f6uA in template set Warning: unaligning (T0506)G21 (2f6uA)T1017 because N (gamma') conformation "forbidden" or filtered. T0506 22 :APFEAVRV 2f6uA 1018 :NTDEIIKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28725 # 1kaeA.21.26 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)A22 (1kaeA)A28 because L (left) conformation "forbidden" or filtered. T0506 21 :G 1kaeA 27 :S T0506 23 :PFEAVRV 1kaeA 29 :SESITRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=28727 # 1k7jA.21.10 read from T0506.t04.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)G21 (1k7jA)N11 because D (zeta) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1k7jA 12 :PQQRLINQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28728 # 1hf8A.21.35 read from T0506.t04.many.frag # found chain 1hf8A in template set Warning: unaligning (T0506)G21 (1hf8A)G36 because P (beta_P) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1hf8A 37 :PKKKHLDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=28729 # 1xo0A.21.116 read from T0506.t04.many.frag # found chain 1xo0A in template set Warning: unaligning (T0506)G21 (1xo0A)A136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A22 (1xo0A)F137 because D (zeta) conformation "forbidden" or filtered. T0506 23 :PFEAVRV 1xo0A 138 :ERTDFDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=28730 # 1z5oA.21.129 read from T0506.t04.many.frag # found chain 1z5oA in template set T0506 21 :GAPFEAVRV 1z5oA 120 :KADDKLIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28731 # 2bo4A.21.104 read from T0506.t04.many.frag # found chain 2bo4A in template set Warning: unaligning (T0506)A22 (2bo4A)F106 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P23 (2bo4A)G107 because Y (epsilon') conformation "forbidden" or filtered. T0506 21 :G 2bo4A 105 :S T0506 24 :FEAVRV 2bo4A 108 :PDWITK Number of specific fragments extracted= 2 number of extra gaps= 1 total=28733 # 1z3eB.21.47 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 21 :GAPFEAVRV 1z3eB 290 :NLGRKSLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28734 # 1b77A.21.1 read from T0506.t04.many.frag # found chain 1b77A in template set Warning: unaligning (T0506)G21 (1b77A)K2 because E (beta_S) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 1b77A 3 :LSKDTIAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=28735 # 2azeA.21.117 read from T0506.t04.many.frag # found chain 2azeA in template set T0506 21 :GAPFEAVRV 2azeA 313 :SCSAEDLKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28736 # 1vliA.21.96 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vliA)I91 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vliA)I91 T0506 21 :GAPFE 1vliA 85 :EMPAE T0506 28 :RV 1vliA 92 :LP Number of specific fragments extracted= 2 number of extra gaps= 1 total=28738 # 1otjA.21.25 read from T0506.t04.many.frag # found chain 1otjA in template set T0506 21 :GAPFEAVRV 1otjA 26 :PLSDNQFEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28739 # 1vqrA.21.28 read from T0506.t04.many.frag # found chain 1vqrA in template set T0506 21 :GAPFEAVRV 1vqrA 17 :PPLPDTVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28740 # 1t3tA.21.53 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 21 :GAPFEAVRV 1t3tA 46 :PLNDSEQAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28741 # 1tt8A.21.18 read from T0506.t04.many.frag # found chain 1tt8A in training set T0506 21 :GAPFEAVRV 1tt8A 19 :ALDPQLLDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28742 # 1euvA.21.5 read from T0506.t04.many.frag # found chain 1euvA in training set T0506 21 :GAPFEAVRV 1euvA 406 :ELNEKDDDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28743 # 2bmoA.21.18 read from T0506.t04.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)G21 (2bmoA)H19 because G (3-10) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 2bmoA 20 :GDKELFQH Number of specific fragments extracted= 1 number of extra gaps= 1 total=28744 # 1q6zA.21.183 read from T0506.t04.many.frag # found chain 1q6zA in training set T0506 21 :GAPFEAVRV 1q6zA 184 :RLNDQDLDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28745 # 2cs7A.21.39 read from T0506.t04.many.frag # found chain 2cs7A in template set Warning: unaligning (T0506)G21 (2cs7A)E39 because G (3-10) conformation "forbidden" or filtered. T0506 22 :APFEAVRV 2cs7A 40 :LSASELAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28746 # 1k78A.21.31 read from T0506.t04.many.frag # found chain 1k78A in template set T0506 21 :GAPFEAVRV 1k78A 32 :PLPDVVRQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28747 # 1r7mA.21.27 read from T0506.t04.many.frag # found chain 1r7mA in template set Warning: unaligning (T0506)A22 (1r7mA)L29 because P (beta_P) conformation "forbidden" or filtered. T0506 21 :G 1r7mA 28 :E T0506 23 :PFEAVRV 1r7mA 30 :NIEQFEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28749 # 1no7A.21.154 read from T0506.t04.many.frag # found chain 1no7A in template set T0506 21 :GAPFEAVRV 1no7A 605 :AMAPATIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28750 # 1vk9A.22.12 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 22 :APFEAVRVA 1vk9A 1 :VEKNLLRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28751 # 1p2xA.22.133 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 22 :APFEAVRVA 1p2xA 165 :FTDEDVSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=28752 # 1c7nA.22.66 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 22 :APFEAVRVA 1c7nA 67 :PTEEYKKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28753 # 1xbiA.22.11 read from T0506.t04.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)F24 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0506)E25 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 T0506 22 :AP 1xbiA 9 :VP T0506 26 :AVRVA 1xbiA 13 :IQKEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28755 # 1xo0A.22.117 read from T0506.t04.many.frag # found chain 1xo0A in template set T0506 22 :APFEAVRVA 1xo0A 137 :FERTDFDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28756 # 1nlfA.22.118 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 22 :APFEAVRVA 1nlfA 119 :MAPEWFDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28757 # 1z5oA.22.130 read from T0506.t04.many.frag # found chain 1z5oA in template set Warning: unaligning (T0506)A22 (1z5oA)A121 because P (beta_P) conformation "forbidden" or filtered. T0506 23 :PFEAVRVA 1z5oA 122 :DDKLIAAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28758 # 1k7jA.22.11 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 22 :APFEAVRVA 1k7jA 12 :PQQRLINQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28759 # 1q52A.22.60 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 22 :APFEAVRVA 1q52A 61 :FRPHTVDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28760 # 2bmoA.22.19 read from T0506.t04.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)A22 (2bmoA)G20 because G (3-10) conformation "forbidden" or filtered. T0506 23 :PFEAVRVA 2bmoA 21 :DKELFQHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28761 # 1jftA.22.26 read from T0506.t04.many.frag # found chain 1jftA in template set T0506 22 :APFEAVRVA 1jftA 28 :VAEETRNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28762 # 1n9eA.22.63 read from T0506.t04.many.frag # found chain 1n9eA in training set T0506 22 :APFEAVRVA 1n9eA 64 :LAKEEVQEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28763 # 1z3eB.22.48 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 22 :APFEAVRVA 1z3eB 291 :LGRKSLEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28764 # 1otjA.22.26 read from T0506.t04.many.frag # found chain 1otjA in template set T0506 22 :APFEAVRVA 1otjA 27 :LSDNQFEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28765 # 1vliA.22.97 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)A22 (1vliA)M86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vliA)I91 Warning: unaligning (T0506)V27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vliA)I91 T0506 23 :PFE 1vliA 87 :PAE T0506 28 :RVA 1vliA 92 :LPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=28767 # 1nv8A.22.59 read from T0506.t04.many.frag # found chain 1nv8A in template set T0506 22 :APFEAVRVA 1nv8A 58 :VSPTEEKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28768 # 1hf8A.22.36 read from T0506.t04.many.frag # found chain 1hf8A in template set T0506 22 :APFEAVRVA 1hf8A 37 :PKKKHLDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28769 1wmgA expands to /projects/compbio/data/pdb/1wmg.pdb.gz 1wmgA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wmgA.22.11 read from T0506.t04.many.frag # adding 1wmgA to template set # found chain 1wmgA in template set T0506 22 :APFEAVRVA 1wmgA 858 :IPLSIRQKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28770 # 1q6zA.22.184 read from T0506.t04.many.frag # found chain 1q6zA in training set T0506 22 :APFEAVRVA 1q6zA 185 :LNDQDLDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28771 # 2azeA.22.118 read from T0506.t04.many.frag # found chain 2azeA in template set T0506 22 :APFEAVRVA 2azeA 314 :CSAEDLKMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28772 # 2cs7A.22.40 read from T0506.t04.many.frag # found chain 2cs7A in template set T0506 22 :APFEAVRVA 2cs7A 40 :LSASELAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28773 1vjrA expands to /projects/compbio/data/pdb/1vjr.pdb.gz 1vjrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 172, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 173, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 177, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 178, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 180, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 181, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 183, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 184, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 186, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 187, because occupancy 0.330 <= existing 0.340 in 1vjrA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 1vjrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1601, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1605, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1607, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1630, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 1vjrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1868, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1872, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1874, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1876, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1878, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1880, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1912, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1914, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1916, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1918, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1920, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1922, because occupancy 0.350 <= existing 0.650 in 1vjrA Skipped atom 1930, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1936, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1938, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1940, because occupancy 0.500 <= existing 0.500 in 1vjrA Skipped atom 1942, because occupancy 0.500 <= existing 0.500 in 1vjrA # 1vjrA.22.136 read from T0506.t04.many.frag # adding 1vjrA to template set # found chain 1vjrA in template set Warning: unaligning (T0506)P23 (1vjrA)T126 because E (beta_S) conformation "forbidden" or filtered. T0506 22 :A 1vjrA 125 :L T0506 24 :FEAVRVA 1vjrA 127 :YERLKKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=28775 1z2nX expands to /projects/compbio/data/pdb/1z2n.pdb.gz 1z2nX:# 1z2nX.22.65 read from T0506.t04.many.frag # adding 1z2nX to template set # found chain 1z2nX in template set Warning: unaligning (T0506)P23 (1z2nX)V62 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F24 (1z2nX)G63 because S (epsilon) conformation "forbidden" or filtered. T0506 22 :A 1z2nX 61 :P T0506 25 :EAVRVA 1z2nX 64 :KMADEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=28777 # 1b77A.22.2 read from T0506.t04.many.frag # found chain 1b77A in template set T0506 22 :APFEAVRVA 1b77A 3 :LSKDTIAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28778 # 1zl0A.22.28 read from T0506.t04.many.frag # found chain 1zl0A in template set T0506 22 :APFEAVRVA 1zl0A 27 :IATDVLEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=28779 # 1ak0.22.16 read from T0506.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0506)A22 (1ak0)V17 because P (beta_P) conformation "forbidden" or filtered. T0506 23 :PFEAVRVA 1ak0 18 :SPEAASWA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28780 1bywA expands to /projects/compbio/data/pdb/1byw.pdb.gz 1bywA:# 1bywA.22.48 read from T0506.t04.many.frag # adding 1bywA to template set # found chain 1bywA in template set T0506 22 :APFEAVRVA 1bywA 74 :TQRRAAAQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28781 # 1yc5A.22.165 read from T0506.t04.many.frag # found chain 1yc5A in template set Warning: unaligning (T0506)A22 (1yc5A)L166 because P (beta_P) conformation "forbidden" or filtered. T0506 23 :PFEAVRVA 1yc5A 167 :PQDALREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28782 # 1g61A.22.75 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 22 :APFEAVRVA 1g61A 2076 :VEDEELDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28783 # 1dfmA.22.14 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 22 :APFEAVRVA 1dfmA 15 :LNPQLWKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28784 # 1vk9A.23.13 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 23 :PFEAVRVAR 1vk9A 2 :EKNLLRSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28785 # 1nlfA.23.119 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 23 :PFEAVRVAR 1nlfA 120 :APEWFDGLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28786 # 1k7jA.23.12 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 23 :PFEAVRVAR 1k7jA 13 :QQRLINQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28787 # 2bmoA.23.20 read from T0506.t04.many.frag # found chain 2bmoA in template set T0506 23 :PFEAVRVAR 2bmoA 21 :DKELFQHEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28788 # 1xbiA.23.12 read from T0506.t04.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)F24 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0506)E25 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 T0506 23 :P 1xbiA 10 :P T0506 26 :AVRVAR 1xbiA 13 :IQKELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=28790 # 1dfmA.23.15 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 23 :PFEAVRVAR 1dfmA 16 :NPQLWKEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28791 # 1c7nA.23.67 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 23 :PFEAVRVAR 1c7nA 68 :TEEYKKTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28792 # 1q52A.23.61 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 23 :PFEAVRVAR 1q52A 62 :RPHTVDELY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28793 # 1r6fA.23.5 read from T0506.t04.many.frag # found chain 1r6fA in template set Warning: unaligning (T0506)P23 because first residue in template chain is (1r6fA)G28 T0506 24 :FEAVRVAR 1r6fA 29 :SSVLEELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28794 # 1u02A.23.24 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 23 :PFEAVRVAR 1u02A 25 :DAGLLSLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28795 # 1g61A.23.76 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 23 :PFEAVRVAR 1g61A 2077 :EDEELDRIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28796 # 1p2xA.23.134 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 23 :PFEAVRVAR 1p2xA 166 :TDEDVSIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28797 # 1jftA.23.27 read from T0506.t04.many.frag # found chain 1jftA in template set T0506 23 :PFEAVRVAR 1jftA 29 :AEETRNAVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28798 # 1z2nX.23.66 read from T0506.t04.many.frag # found chain 1z2nX in template set Warning: unaligning (T0506)P23 (1z2nX)V62 because E (beta_S) conformation "forbidden" or filtered. T0506 24 :FEAVRVAR 1z2nX 63 :GKMADEMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28799 # 1xo0A.23.118 read from T0506.t04.many.frag # found chain 1xo0A in template set T0506 23 :PFEAVRVAR 1xo0A 138 :ERTDFDQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28800 # 1z3eB.23.49 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 23 :PFEAVRVAR 1z3eB 292 :GRKSLEEVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28801 # 1otjA.23.27 read from T0506.t04.many.frag # found chain 1otjA in template set T0506 23 :PFEAVRVAR 1otjA 28 :SDNQFEQLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28802 # 1vjrA.23.137 read from T0506.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0506)P23 (1vjrA)T126 because E (beta_S) conformation "forbidden" or filtered. T0506 24 :FEAVRVAR 1vjrA 127 :YERLKKAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=28803 # 1ne2A.23.82 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 23 :PFEAVRVAR 1ne2A 80 :DPDAIETAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28804 # 1z5oA.23.131 read from T0506.t04.many.frag # found chain 1z5oA in template set T0506 23 :PFEAVRVAR 1z5oA 122 :DDKLIAAAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28805 # 1hf8A.23.37 read from T0506.t04.many.frag # found chain 1hf8A in template set T0506 23 :PFEAVRVAR 1hf8A 38 :KKKHLDYLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28806 # 1ekqA.23.146 read from T0506.t04.many.frag # found chain 1ekqA in training set Warning: unaligning (T0506)P23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ekqA)G147 T0506 24 :FEAVRVAR 1ekqA 148 :GDIIRLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28807 # 1wmgA.23.12 read from T0506.t04.many.frag # found chain 1wmgA in template set T0506 23 :PFEAVRVAR 1wmgA 859 :PLSIRQKIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28808 # 1bywA.23.49 read from T0506.t04.many.frag # found chain 1bywA in template set T0506 23 :PFEAVRVAR 1bywA 75 :QRRAAAQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28809 # 1n9eA.23.64 read from T0506.t04.many.frag # found chain 1n9eA in training set T0506 23 :PFEAVRVAR 1n9eA 65 :AKEEVQEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28810 # 1xpjA.23.25 read from T0506.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0506)P23 because of BadResidue code BAD_PEPTIDE at template residue (1xpjA)R26 T0506 24 :FEAVRVAR 1xpjA 27 :LDVIEQLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=28811 2cc3A expands to /projects/compbio/data/pdb/2cc3.pdb.gz 2cc3A:# 2cc3A.23.41 read from T0506.t04.many.frag # adding 2cc3A to template set # found chain 2cc3A in template set T0506 23 :PFEAVRVAR 2cc3A 129 :APMVRQNYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28812 # 1ak0.23.17 read from T0506.t04.many.frag # found chain 1ak0 in training set T0506 23 :PFEAVRVAR 1ak0 18 :SPEAASWAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28813 # 1jg1A.23.122 read from T0506.t04.many.frag # found chain 1jg1A in training set T0506 23 :PFEAVRVAR 1jg1A 123 :IPELVEFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28814 # 1bjt.23.82 read from T0506.t04.many.frag # found chain 1bjt in template set T0506 23 :PFEAVRVAR 1bjt 491 :KNAEIQAIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28815 # 1vk9A.24.14 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 24 :FEAVRVARD 1vk9A 3 :KNLLRSALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28816 # 1k7jA.24.13 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 24 :FEAVRVARD 1k7jA 14 :QRLINQAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28817 # 1z2nX.24.67 read from T0506.t04.many.frag # found chain 1z2nX in template set Warning: unaligning (T0506)F24 (1z2nX)G63 because S (epsilon) conformation "forbidden" or filtered. T0506 25 :EAVRVARD 1z2nX 64 :KMADEMRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28818 # 1r6fA.24.6 read from T0506.t04.many.frag # found chain 1r6fA in template set T0506 24 :FEAVRVARD 1r6fA 29 :SSVLEELVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28819 # 1nlfA.24.120 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 24 :FEAVRVARD 1nlfA 121 :PEWFDGLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28820 # 1g61A.24.77 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 24 :FEAVRVARD 1g61A 2078 :DEELDRIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28821 # 2bmoA.24.21 read from T0506.t04.many.frag # found chain 2bmoA in template set T0506 24 :FEAVRVARD 2bmoA 22 :KELFQHELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28822 # 1xo0A.24.119 read from T0506.t04.many.frag # found chain 1xo0A in template set T0506 24 :FEAVRVARD 1xo0A 139 :RTDFDQVRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28823 # 1dfmA.24.16 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 24 :FEAVRVARD 1dfmA 17 :PQLWKEIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28824 # 1xbiA.24.13 read from T0506.t04.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)F24 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0506)E25 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 T0506 26 :AVRVARD 1xbiA 13 :IQKELLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28825 # 1ne2A.24.83 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 24 :FEAVRVARD 1ne2A 81 :PDAIETAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28826 # 1xtpA.24.125 read from T0506.t04.many.frag # found chain 1xtpA in template set T0506 24 :FEAVRVARD 1xtpA 126 :KHMLEEAKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28827 # 1z3eB.24.50 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 24 :FEAVRVARD 1z3eB 293 :RKSLEEVKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28828 # 1otjA.24.28 read from T0506.t04.many.frag # found chain 1otjA in template set T0506 24 :FEAVRVARD 1otjA 29 :DNQFEQLYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28829 # 1q52A.24.62 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 24 :FEAVRVARD 1q52A 63 :PHTVDELYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28830 # 1n9eA.24.65 read from T0506.t04.many.frag # found chain 1n9eA in training set T0506 24 :FEAVRVARD 1n9eA 66 :KEEVQEVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28831 # 1vjrA.24.138 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 24 :FEAVRVARD 1vjrA 127 :YERLKKACI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28832 1nt2A expands to /projects/compbio/data/pdb/1nt2.pdb.gz 1nt2A:# 1nt2A.24.90 read from T0506.t04.many.frag # adding 1nt2A to template set # found chain 1nt2A in template set T0506 24 :FEAVRVARD 1nt2A 91 :AKPFEKLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28833 # 1jftA.24.28 read from T0506.t04.many.frag # found chain 1jftA in template set T0506 24 :FEAVRVARD 1jftA 30 :EETRNAVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28834 # 1bywA.24.50 read from T0506.t04.many.frag # found chain 1bywA in template set T0506 24 :FEAVRVARD 1bywA 76 :RRAAAQIAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28835 # 1xpjA.24.26 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 24 :FEAVRVARD 1xpjA 27 :LDVIEQLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28836 # 1p2xA.24.135 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 24 :FEAVRVARD 1p2xA 167 :DEDVSIIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28837 # 1z5oA.24.132 read from T0506.t04.many.frag # found chain 1z5oA in template set T0506 24 :FEAVRVARD 1z5oA 123 :DKLIAAAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28838 # 1ak0.24.18 read from T0506.t04.many.frag # found chain 1ak0 in training set T0506 24 :FEAVRVARD 1ak0 19 :PEAASWAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28839 # 1u02A.24.25 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 24 :FEAVRVARD 1u02A 26 :AGLLSLISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28840 # 1wmgA.24.13 read from T0506.t04.many.frag # found chain 1wmgA in template set T0506 24 :FEAVRVARD 1wmgA 860 :LSIRQKICS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28841 # 1hf8A.24.38 read from T0506.t04.many.frag # found chain 1hf8A in template set T0506 24 :FEAVRVARD 1hf8A 39 :KKHLDYLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28842 # 1mw9X.24.89 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 24 :FEAVRVARD 1mw9X 90 :EKVVSELKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28843 # 1qd1A.24.15 read from T0506.t04.many.frag # found chain 1qd1A in training set T0506 24 :FEAVRVARD 1qd1A 17 :QEVIDAISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28844 # 1sg6A.24.85 read from T0506.t04.many.frag # found chain 1sg6A in training set T0506 24 :FEAVRVARD 1sg6A 86 :RQTKADIED Number of specific fragments extracted= 1 number of extra gaps= 0 total=28845 # 1g61A.25.78 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 25 :EAVRVARDV 1g61A 2079 :EELDRIKNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28846 # 1k7jA.25.14 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 25 :EAVRVARDV 1k7jA 15 :RLINQAVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28847 # 1vk9A.25.15 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 25 :EAVRVARDV 1vk9A 4 :NLLRSALKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28848 # 1xtpA.25.126 read from T0506.t04.many.frag # found chain 1xtpA in template set T0506 25 :EAVRVARDV 1xtpA 127 :HMLEEAKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28849 # 1ne2A.25.84 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 25 :EAVRVARDV 1ne2A 82 :DAIETAKRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28850 # 1vjrA.25.139 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 25 :EAVRVARDV 1vjrA 128 :ERLKKACIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28851 # 1nlfA.25.121 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 25 :EAVRVARDV 1nlfA 122 :EWFDGLKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28852 # 1z2nX.25.68 read from T0506.t04.many.frag # found chain 1z2nX in template set T0506 25 :EAVRVARDV 1z2nX 64 :KMADEMRKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28853 # 1nt2A.25.91 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 25 :EAVRVARDV 1nt2A 92 :KPFEKLLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28854 # 1xpjA.25.27 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 25 :EAVRVARDV 1xpjA 28 :DVIEQLREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28855 # 1dfmA.25.17 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 25 :EAVRVARDV 1dfmA 18 :QLWKEIEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=28856 # 1r6fA.25.7 read from T0506.t04.many.frag # found chain 1r6fA in template set T0506 25 :EAVRVARDV 1r6fA 30 :SVLEELVQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28857 # 1mw9X.25.90 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 25 :EAVRVARDV 1mw9X 91 :KVVSELKQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28858 # 1xbiA.25.14 read from T0506.t04.many.frag # found chain 1xbiA in template set Warning: unaligning (T0506)E25 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 T0506 26 :AVRVARDV 1xbiA 13 :IQKELLDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28859 # 1u02A.25.26 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 25 :EAVRVARDV 1u02A 27 :GLLSLISDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28860 # 2f46A.25.88 read from T0506.t04.many.frag # found chain 2f46A in template set T0506 25 :EAVRVARDV 2f46A 88 :HDVETFRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28861 # 1jftA.25.29 read from T0506.t04.many.frag # found chain 1jftA in template set T0506 25 :EAVRVARDV 1jftA 31 :ETRNAVWAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28862 # 1ak0.25.19 read from T0506.t04.many.frag # found chain 1ak0 in training set T0506 25 :EAVRVARDV 1ak0 20 :EAASWAQGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28863 # 1xo0A.25.120 read from T0506.t04.many.frag # found chain 1xo0A in template set T0506 25 :EAVRVARDV 1xo0A 140 :TDFDQVRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28864 # 1nv8A.25.62 read from T0506.t04.many.frag # found chain 1nv8A in template set T0506 25 :EAVRVARDV 1nv8A 61 :TEEKRILEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28865 # 1ysjA.25.52 read from T0506.t04.many.frag # found chain 1ysjA in template set T0506 25 :EAVRVARDV 1ysjA 29 :ETTKKIRRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28866 # 1n9eA.25.66 read from T0506.t04.many.frag # found chain 1n9eA in training set T0506 25 :EAVRVARDV 1n9eA 67 :EEVQEVLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28867 # 1q52A.25.63 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 25 :EAVRVARDV 1q52A 64 :HTVDELYRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28868 1zs9A expands to /projects/compbio/data/pdb/1zs9.pdb.gz 1zs9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zs9A.25.133 read from T0506.t04.many.frag # adding 1zs9A to template set # found chain 1zs9A in template set T0506 25 :EAVRVARDV 1zs9A 134 :DVVPAVRKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=28869 1xcbA expands to /projects/compbio/data/pdb/1xcb.pdb.gz 1xcbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xcbA.25.65 read from T0506.t04.many.frag # adding 1xcbA to template set # found chain 1xcbA in template set T0506 25 :EAVRVARDV 1xcbA 66 :VLKRELRHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28870 # 1qd1A.25.16 read from T0506.t04.many.frag # found chain 1qd1A in training set T0506 25 :EAVRVARDV 1qd1A 18 :EVIDAISRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28871 # 1p2xA.25.136 read from T0506.t04.many.frag # found chain 1p2xA in template set T0506 25 :EAVRVARDV 1p2xA 168 :EDVSIIVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28872 # 1z5oA.25.133 read from T0506.t04.many.frag # found chain 1z5oA in template set T0506 25 :EAVRVARDV 1z5oA 124 :KLIAAAEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28873 # 1otjA.25.29 read from T0506.t04.many.frag # found chain 1otjA in template set T0506 25 :EAVRVARDV 1otjA 30 :NQFEQLYHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28874 # 1jg1A.25.124 read from T0506.t04.many.frag # found chain 1jg1A in training set T0506 25 :EAVRVARDV 1jg1A 125 :ELVEFAKRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28875 # 1xtpA.26.127 read from T0506.t04.many.frag # found chain 1xtpA in template set T0506 26 :AVRVARDVL 1xtpA 128 :MLEEAKREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28876 # 1k7jA.26.15 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 26 :AVRVARDVL 1k7jA 16 :LINQAVEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28877 # 1g61A.26.79 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 26 :AVRVARDVL 1g61A 2080 :ELDRIKNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28878 # 1ne2A.26.85 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 26 :AVRVARDVL 1ne2A 83 :AIETAKRNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=28879 # 1vk9A.26.16 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 26 :AVRVARDVL 1vk9A 5 :LLRSALKIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28880 # 1xcbA.26.66 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 26 :AVRVARDVL 1xcbA 67 :LKRELRHIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28881 # 1mw9X.26.91 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 26 :AVRVARDVL 1mw9X 92 :VVSELKQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28882 # 1z2nX.26.69 read from T0506.t04.many.frag # found chain 1z2nX in template set T0506 26 :AVRVARDVL 1z2nX 65 :MADEMRKYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28883 # 1zs9A.26.134 read from T0506.t04.many.frag # found chain 1zs9A in template set T0506 26 :AVRVARDVL 1zs9A 135 :VVPAVRKWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28884 # 1xpjA.26.28 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 26 :AVRVARDVL 1xpjA 29 :VIEQLREYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28885 # 1vjrA.26.140 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 26 :AVRVARDVL 1vjrA 129 :RLKKACILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28886 # 2f46A.26.89 read from T0506.t04.many.frag # found chain 2f46A in template set T0506 26 :AVRVARDVL 2f46A 89 :DVETFRQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28887 # 1r6fA.26.8 read from T0506.t04.many.frag # found chain 1r6fA in template set T0506 26 :AVRVARDVL 1r6fA 31 :VLEELVQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28888 # 1ysjA.26.53 read from T0506.t04.many.frag # found chain 1ysjA in template set T0506 26 :AVRVARDVL 1ysjA 30 :TTKKIRRWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28889 2gmfA expands to /projects/compbio/data/pdb/2gmf.pdb.gz 2gmfA:# 2gmfA.26.17 read from T0506.t04.many.frag # adding 2gmfA to template set # found chain 2gmfA in template set T0506 26 :AVRVARDVL 2gmfA 18 :AIQEARRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28890 # 1nv8A.26.63 read from T0506.t04.many.frag # found chain 1nv8A in template set T0506 26 :AVRVARDVL 1nv8A 62 :EEKRILELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28891 # 1n9eA.26.67 read from T0506.t04.many.frag # found chain 1n9eA in training set T0506 26 :AVRVARDVL 1n9eA 68 :EVQEVLDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28892 # 1nt2A.26.92 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 26 :AVRVARDVL 1nt2A 93 :PFEKLLELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28893 # 1cnv.26.64 read from T0506.t04.many.frag # found chain 1cnv in training set T0506 26 :AVRVARDVL 1cnv 65 :LESQIKECQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28894 # 1xo0A.26.121 read from T0506.t04.many.frag # found chain 1xo0A in template set T0506 26 :AVRVARDVL 1xo0A 141 :DFDQVRSLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28895 # 1z3eB.26.52 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 26 :AVRVARDVL 1z3eB 295 :SLEEVKAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28896 # 1u02A.26.27 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 26 :AVRVARDVL 1u02A 28 :LLSLISDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28897 # 1xbiA.26.15 read from T0506.t04.many.frag # found chain 1xbiA in template set T0506 26 :AVRVARDVL 1xbiA 13 :IQKELLDAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28898 # 1dfmA.26.18 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 26 :AVRVARDVL 1dfmA 19 :LWKEIEETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28899 # 2axoA.26.59 read from T0506.t04.many.frag # found chain 2axoA in template set T0506 26 :AVRVARDVL 2axoA 60 :ADEALRKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28900 # 1nlfA.26.122 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 26 :AVRVARDVL 1nlfA 123 :WFDGLKRAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28901 # 1z5oA.26.134 read from T0506.t04.many.frag # found chain 1z5oA in template set T0506 26 :AVRVARDVL 1z5oA 125 :LIAAAEACI Number of specific fragments extracted= 1 number of extra gaps= 0 total=28902 # 1sg6A.26.87 read from T0506.t04.many.frag # found chain 1sg6A in training set T0506 26 :AVRVARDVL 1sg6A 88 :TKADIEDWM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28903 2a40B expands to /projects/compbio/data/pdb/2a40.pdb.gz 2a40B:Skipped atom 3031, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3035, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3037, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3132, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3136, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3138, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3140, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3142, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3144, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3146, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3148, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3505, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3509, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3511, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3513, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3515, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3657, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3661, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 3663, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 4387, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 4391, because occupancy 0.500 <= existing 0.500 in 2a40B Skipped atom 4393, because occupancy 0.500 <= existing 0.500 in 2a40B # 2a40B.26.20 read from T0506.t04.many.frag # adding 2a40B to template set # found chain 2a40B in template set T0506 26 :AVRVARDVL 2a40B 21 :LASYIVRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28904 # 1s9rA.26.109 read from T0506.t04.many.frag # found chain 1s9rA in training set T0506 26 :AVRVARDVL 1s9rA 110 :HKVVVRNFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28905 # 1g61A.27.80 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 27 :VRVARDVLH 1g61A 2081 :LDRIKNFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28906 # 1nt2A.27.93 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 27 :VRVARDVLH 1nt2A 94 :FEKLLELVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28907 # 1k7jA.27.16 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 27 :VRVARDVLH 1k7jA 17 :INQAVEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28908 # 1xtpA.27.128 read from T0506.t04.many.frag # found chain 1xtpA in template set T0506 27 :VRVARDVLH 1xtpA 129 :LEEAKRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28909 # 1vk9A.27.17 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 27 :VRVARDVLH 1vk9A 6 :LRSALKIFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28910 # 1mw9X.27.92 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 27 :VRVARDVLH 1mw9X 93 :VSELKQLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28911 # 1zs9A.27.135 read from T0506.t04.many.frag # found chain 1zs9A in template set T0506 27 :VRVARDVLH 1zs9A 136 :VPAVRKWRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28912 # 2f46A.27.90 read from T0506.t04.many.frag # found chain 2f46A in template set T0506 27 :VRVARDVLH 2f46A 90 :VETFRQLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28913 # 1ne2A.27.86 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 27 :VRVARDVLH 1ne2A 84 :IETAKRNCG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28914 # 2gmfA.27.18 read from T0506.t04.many.frag # found chain 2gmfA in template set T0506 27 :VRVARDVLH 2gmfA 19 :IQEARRLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28915 # 2a40B.27.21 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 27 :VRVARDVLH 2a40B 22 :ASYIVRIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28916 # 2axoA.27.60 read from T0506.t04.many.frag # found chain 2axoA in template set T0506 27 :VRVARDVLH 2axoA 61 :DEALRKMIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28917 # 1z2nX.27.70 read from T0506.t04.many.frag # found chain 1z2nX in template set T0506 27 :VRVARDVLH 1z2nX 66 :ADEMRKYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28918 # 1xpjA.27.29 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 27 :VRVARDVLH 1xpjA 30 :IEQLREYHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28919 # 1xcbA.27.67 read from T0506.t04.many.frag # found chain 1xcbA in template set Warning: unaligning (T0506)H35 (1xcbA)G76 because T (delta_L) conformation "forbidden" or filtered. T0506 27 :VRVARDVL 1xcbA 68 :KRELRHIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=28920 # 1cnv.27.65 read from T0506.t04.many.frag # found chain 1cnv in training set T0506 27 :VRVARDVLH 1cnv 66 :ESQIKECQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28921 # 1xbiA.27.16 read from T0506.t04.many.frag # found chain 1xbiA in template set T0506 27 :VRVARDVLH 1xbiA 14 :QKELLDAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28922 # 1r6fA.27.9 read from T0506.t04.many.frag # found chain 1r6fA in template set T0506 27 :VRVARDVLH 1r6fA 32 :LEELVQLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28923 # 1u02A.27.28 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 27 :VRVARDVLH 1u02A 29 :LSLISDLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28924 # 1nv8A.27.64 read from T0506.t04.many.frag # found chain 1nv8A in template set T0506 27 :VRVARDVLH 1nv8A 63 :EKRILELVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28925 2a1rA expands to /projects/compbio/data/pdb/2a1r.pdb.gz 2a1rA:# 2a1rA.27.11 read from T0506.t04.many.frag # adding 2a1rA to template set # found chain 2a1rA in template set T0506 27 :VRVARDVLH 2a1rA 12 :LHKVYQAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28926 # 1nlfA.27.123 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)H35 (1nlfA)E132 because P (beta_P) conformation "forbidden" or filtered. T0506 27 :VRVARDVL 1nlfA 124 :FDGLKRAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28927 # 1uocA.27.27 read from T0506.t04.many.frag # found chain 1uocA in template set T0506 27 :VRVARDVLH 1uocA 28 :FAVIRQLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28928 # 1dfmA.27.19 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 27 :VRVARDVLH 1dfmA 20 :WKEIEETLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28929 # 2b9eA.27.137 read from T0506.t04.many.frag # found chain 2b9eA in template set T0506 27 :VRVARDVLH 2b9eA 264 :LASMATLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28930 # 1yrbA.27.98 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 27 :VRVARDVLH 1yrbA 85 :LNKILRLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28931 # 1n9eA.27.68 read from T0506.t04.many.frag # found chain 1n9eA in training set T0506 27 :VRVARDVLH 1n9eA 69 :VQEVLDLLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28932 # 1ysjA.27.54 read from T0506.t04.many.frag # found chain 1ysjA in template set T0506 27 :VRVARDVLH 1ysjA 31 :TKKIRRWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28933 # 1vjrA.27.141 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 27 :VRVARDVLH 1vjrA 130 :LKKACILLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28934 # 1sg6A.27.88 read from T0506.t04.many.frag # found chain 1sg6A in training set T0506 27 :VRVARDVLH 1sg6A 89 :KADIEDWML Number of specific fragments extracted= 1 number of extra gaps= 0 total=28935 # 1g61A.28.81 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 28 :RVARDVLHT 1g61A 2082 :DRIKNFLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28936 # 1nt2A.28.94 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 28 :RVARDVLHT 1nt2A 95 :EKLLELVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28937 # 2f46A.28.91 read from T0506.t04.many.frag # found chain 2f46A in template set T0506 28 :RVARDVLHT 2f46A 91 :ETFRQLIGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28938 # 1zs9A.28.136 read from T0506.t04.many.frag # found chain 1zs9A in template set T0506 28 :RVARDVLHT 1zs9A 137 :PAVRKWREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28939 # 1xtpA.28.129 read from T0506.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0506)T36 (1xtpA)G138 because L (left) conformation "forbidden" or filtered. T0506 28 :RVARDVLH 1xtpA 130 :EEAKRELA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28940 # 1mw9X.28.93 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 28 :RVARDVLHT 1mw9X 94 :SELKQLAEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28941 # 2axoA.28.61 read from T0506.t04.many.frag # found chain 2axoA in template set T0506 28 :RVARDVLHT 2axoA 62 :EALRKMIQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28942 # 2gmfA.28.19 read from T0506.t04.many.frag # found chain 2gmfA in template set T0506 28 :RVARDVLHT 2gmfA 20 :QEARRLLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28943 # 1xpjA.28.30 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 28 :RVARDVLHT 1xpjA 31 :EQLREYHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28944 # 1k7jA.28.17 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 28 :RVARDVLHT 1k7jA 18 :NQAVEIVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28945 # 2a40B.28.22 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 28 :RVARDVLHT 2a40B 23 :SYIVRIVRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28946 # 2a1rA.28.12 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 28 :RVARDVLHT 2a1rA 13 :HKVYQAIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28947 # 1xcbA.28.68 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 28 :RVARDVLHT 1xcbA 69 :RELRHILGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=28948 # 1nv8A.28.65 read from T0506.t04.many.frag # found chain 1nv8A in template set T0506 28 :RVARDVLHT 1nv8A 64 :KRILELVEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28949 # 1cnv.28.66 read from T0506.t04.many.frag # found chain 1cnv in training set T0506 28 :RVARDVLHT 1cnv 67 :SQIKECQRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=28950 # 2b8eA.28.112 read from T0506.t04.many.frag # found chain 2b8eA in template set T0506 28 :RVARDVLHT 2b8eA 519 :LALEKLERE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28951 # 1ne2A.28.87 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 28 :RVARDVLHT 1ne2A 85 :ETAKRNCGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28952 # 2fqxA.28.52 read from T0506.t04.many.frag # found chain 2fqxA in template set T0506 28 :RVARDVLHT 2fqxA 68 :PSLSAFADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28953 # 1ne9A.28.11 read from T0506.t04.many.frag # found chain 1ne9A in training set T0506 28 :RVARDVLHT 1ne9A 12 :ERYEEFMRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=28954 # 1vk9A.28.18 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 28 :RVARDVLHT 1vk9A 7 :RSALKIFEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28955 1zp4A expands to /projects/compbio/data/pdb/1zp4.pdb.gz 1zp4A:# 1zp4A.28.100 read from T0506.t04.many.frag # adding 1zp4A to template set # found chain 1zp4A in template set T0506 28 :RVARDVLHT 1zp4A 101 :TIARDYWNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28956 # 1yrbA.28.99 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 28 :RVARDVLHT 1yrbA 86 :NKILRLEKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=28957 # 1s9rA.28.111 read from T0506.t04.many.frag # found chain 1s9rA in training set T0506 28 :RVARDVLHT 1s9rA 112 :VVVRNFLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28958 2d1pA expands to /projects/compbio/data/pdb/2d1p.pdb.gz 2d1pA:# 2d1pA.28.33 read from T0506.t04.many.frag # adding 2d1pA to template set # found chain 2d1pA in template set T0506 28 :RVARDVLHT 2d1pA 22 :QFAQALIAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28959 1y1oA expands to /projects/compbio/data/pdb/1y1o.pdb.gz 1y1oA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y1oA.28.122 read from T0506.t04.many.frag # adding 1y1oA to template set # found chain 1y1oA in template set T0506 28 :RVARDVLHT 1y1oA 120 :RHMEQVVAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=28960 # 2f5tX.28.12 read from T0506.t04.many.frag # found chain 2f5tX in template set T0506 28 :RVARDVLHT 2f5tX 122 :EMFRESLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28961 # 1tfzA.28.104 read from T0506.t04.many.frag # found chain 1tfzA in training set T0506 28 :RVARDVLHT 1tfzA 105 :GSCRSFFSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28962 # 1dfmA.28.20 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 28 :RVARDVLHT 1dfmA 21 :KEIEETLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28963 # 1km4A.28.81 read from T0506.t04.many.frag # found chain 1km4A in training set T0506 28 :RVARDVLHT 1km4A 82 :KICRATFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28964 # 1z2nX.28.71 read from T0506.t04.many.frag # found chain 1z2nX in template set T0506 28 :RVARDVLHT 1z2nX 67 :DEMRKYEKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28965 # 1mw9X.29.94 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 29 :VARDVLHTS 1mw9X 95 :ELKQLAEKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28966 # 2f46A.29.92 read from T0506.t04.many.frag # found chain 2f46A in template set T0506 29 :VARDVLHTS 2f46A 92 :TFRQLIGQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28967 # 2a40B.29.23 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 29 :VARDVLHTS 2a40B 24 :YIVRIVRRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28968 # 1nt2A.29.95 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 29 :VARDVLHTS 1nt2A 96 :KLLELVRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=28969 # 1nlfA.29.125 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 29 :VARDVLHTS 1nlfA 126 :GLKRAAEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28970 # 1k7jA.29.18 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 29 :VARDVLHTS 1k7jA 19 :QAVEIVRKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28971 # 1xtpA.29.130 read from T0506.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0506)T36 (1xtpA)G138 because L (left) conformation "forbidden" or filtered. T0506 29 :VARDVLH 1xtpA 131 :EAKRELA T0506 37 :S 1xtpA 139 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=28973 # 1g61A.29.82 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 29 :VARDVLHTS 1g61A 2083 :RIKNFLKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28974 # 2a1rA.29.13 read from T0506.t04.many.frag # found chain 2a1rA in template set Warning: unaligning (T0506)S37 (2a1rA)A22 because P (beta_P) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 2a1rA 14 :KVYQAIEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28975 # 2axoA.29.62 read from T0506.t04.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)S37 (2axoA)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 2axoA 63 :ALRKMIQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28976 # 1vk9A.29.19 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 29 :VARDVLHTS 1vk9A 8 :SALKIFEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=28977 # 2gmfA.29.20 read from T0506.t04.many.frag # found chain 2gmfA in template set T0506 29 :VARDVLHTS 2gmfA 21 :EARRLLNLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=28978 # 1vjrA.29.143 read from T0506.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0506)S37 (1vjrA)G140 because T (delta_L) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 1vjrA 132 :KACILLRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=28979 # 2fqxA.29.53 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)S37 (2fqxA)N77 because L (left) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 2fqxA 69 :SLSAFADE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28980 # 1zs9A.29.137 read from T0506.t04.many.frag # found chain 1zs9A in template set Warning: unaligning (T0506)S37 (1zs9A)G146 because T (delta_L) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 1zs9A 138 :AVRKWREA Number of specific fragments extracted= 1 number of extra gaps= 1 total=28981 # 1xcbA.29.69 read from T0506.t04.many.frag # found chain 1xcbA in template set Warning: unaligning (T0506)H35 (1xcbA)G76 because T (delta_L) conformation "forbidden" or filtered. T0506 29 :VARDVL 1xcbA 70 :ELRHIL T0506 36 :TS 1xcbA 77 :LN Number of specific fragments extracted= 2 number of extra gaps= 1 total=28983 1a5t expands to /projects/compbio/data/pdb/1a5t.pdb.gz 1a5t:Warning: there is no chain 1a5t will retry with 1a5tA # 1a5t.29.126 read from T0506.t04.many.frag # adding 1a5t to template set # found chain 1a5t in template set T0506 29 :VARDVLHTS 1a5t 127 :ALLKTLEEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28984 # 1u02A.29.30 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 29 :VARDVLHTS 1u02A 31 :LISDLKERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=28985 # 2d1pA.29.34 read from T0506.t04.many.frag # found chain 2d1pA in template set Warning: unaligning (T0506)S37 (2d1pA)G31 because T (delta_L) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 2d1pA 23 :FAQALIAD Number of specific fragments extracted= 1 number of extra gaps= 1 total=28986 # 1xpjA.29.31 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 29 :VARDVLHTS 1xpjA 32 :QLREYHQLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28987 # 1r6fA.29.11 read from T0506.t04.many.frag # found chain 1r6fA in template set T0506 29 :VARDVLHTS 1r6fA 34 :ELVQLVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=28988 # 2b8eA.29.113 read from T0506.t04.many.frag # found chain 2b8eA in template set Warning: unaligning (T0506)S37 (2b8eA)A528 because L (left) conformation "forbidden" or filtered. T0506 29 :VARDVLHT 2b8eA 520 :ALEKLERE Number of specific fragments extracted= 1 number of extra gaps= 1 total=28989 # 1yrbA.29.100 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 29 :VARDVLHTS 1yrbA 87 :KILRLEKEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=28990 # 1uocA.29.29 read from T0506.t04.many.frag # found chain 1uocA in template set T0506 29 :VARDVLHTS 1uocA 30 :VIRQLVSQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=28991 1m8jA expands to /projects/compbio/data/pdb/1m8j.pdb.gz 1m8jA:# 1m8jA.29.21 read from T0506.t04.many.frag # adding 1m8jA to template set # found chain 1m8jA in template set T0506 29 :VARDVLHTS 1m8jA 22 :VIKSILEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28992 # 1iuqA.29.120 read from T0506.t04.many.frag # found chain 1iuqA in training set T0506 29 :VARDVLHTS 1iuqA 122 :DIEEKLQQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=28993 # 1nv8A.29.66 read from T0506.t04.many.frag # found chain 1nv8A in template set T0506 29 :VARDVLHTS 1nv8A 65 :RILELVEKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=28994 # 1lqtA.29.65 read from T0506.t04.many.frag # found chain 1lqtA in training set T0506 29 :VARDVLHTS 1lqtA 66 :QFEKTAEDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=28995 # 1ak0.29.23 read from T0506.t04.many.frag # found chain 1ak0 in training set Warning: unaligning (T0506)H35 (1ak0)G30 because L (left) conformation "forbidden" or filtered. T0506 29 :VARDVL 1ak0 24 :WAQGIL T0506 36 :TS 1ak0 31 :SS Number of specific fragments extracted= 2 number of extra gaps= 1 total=28997 # 1ne2A.29.88 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 29 :VARDVLHTS 1ne2A 86 :TAKRNCGGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=28998 # 2a40B.30.24 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 30 :ARDVLHTSR 2a40B 25 :IVRIVRRYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=28999 # 2f46A.30.93 read from T0506.t04.many.frag # found chain 2f46A in template set T0506 30 :ARDVLHTSR 2f46A 93 :FRQLIGQAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29000 # 1nt2A.30.96 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 30 :ARDVLHTSR 1nt2A 97 :LLELVRERN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29001 # 1mw9X.30.95 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 30 :ARDVLHTSR 1mw9X 96 :LKQLAEKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29002 # 1k7jA.30.19 read from T0506.t04.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)S37 (1k7jA)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1k7jA 20 :AVEIVRK T0506 38 :R 1k7jA 28 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29004 # 2fqxA.30.54 read from T0506.t04.many.frag # found chain 2fqxA in template set T0506 30 :ARDVLHTSR 2fqxA 70 :LSAFADENM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29005 # 2axoA.30.63 read from T0506.t04.many.frag # found chain 2axoA in template set T0506 30 :ARDVLHTSR 2axoA 64 :LRKMIQKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29006 # 1lqtA.30.66 read from T0506.t04.many.frag # found chain 1lqtA in training set T0506 30 :ARDVLHTSR 1lqtA 67 :FEKTAEDPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29007 # 1zs9A.30.138 read from T0506.t04.many.frag # found chain 1zs9A in template set T0506 30 :ARDVLHTSR 1zs9A 139 :VRKWREAGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29008 # 2a1rA.30.14 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 30 :ARDVLHTSR 2a1rA 15 :VYQAIEEAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29009 # 1vjrA.30.144 read from T0506.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0506)S37 (1vjrA)G140 because T (delta_L) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1vjrA 133 :ACILLRK T0506 38 :R 1vjrA 141 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=29011 # 1g61A.30.83 read from T0506.t04.many.frag # found chain 1g61A in training set Warning: unaligning (T0506)R38 (1g61A)N2092 because L (left) conformation "forbidden" or filtered. T0506 30 :ARDVLHTS 1g61A 2084 :IKNFLKEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29012 # 1u02A.30.31 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 30 :ARDVLHTSR 1u02A 32 :ISDLKERFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29013 # 1vk9A.30.20 read from T0506.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0506)R38 (1vk9A)D17 because L (left) conformation "forbidden" or filtered. T0506 30 :ARDVLHTS 1vk9A 9 :ALKIFEKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29014 # 1iuqA.30.121 read from T0506.t04.many.frag # found chain 1iuqA in training set T0506 30 :ARDVLHTSR 1iuqA 123 :IEEKLQQGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29015 # 2d1pA.30.35 read from T0506.t04.many.frag # found chain 2d1pA in template set Warning: unaligning (T0506)S37 (2d1pA)G31 because T (delta_L) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 2d1pA 24 :AQALIAD T0506 38 :R 2d1pA 32 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=29017 # 2b8eA.30.114 read from T0506.t04.many.frag # found chain 2b8eA in template set Warning: unaligning (T0506)S37 (2b8eA)A528 because L (left) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 2b8eA 521 :LEKLERE T0506 38 :R 2b8eA 529 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=29019 # 1xtpA.30.131 read from T0506.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0506)H35 (1xtpA)A137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T36 (1xtpA)G138 because L (left) conformation "forbidden" or filtered. T0506 30 :ARDVL 1xtpA 132 :AKREL T0506 37 :SR 1xtpA 139 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29021 # 2gmfA.30.21 read from T0506.t04.many.frag # found chain 2gmfA in template set T0506 30 :ARDVLHTSR 2gmfA 22 :ARRLLNLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29022 # 1m8jA.30.22 read from T0506.t04.many.frag # found chain 1m8jA in template set T0506 30 :ARDVLHTSR 1m8jA 23 :IKSILEEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29023 # 2b0tA.30.66 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 30 :ARDVLHTSR 2b0tA 67 :LGELAKTPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29024 # 1nlfA.30.126 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)T36 (1nlfA)G133 because T (delta_L) conformation "forbidden" or filtered. T0506 30 :ARDVLH 1nlfA 127 :LKRAAE T0506 37 :SR 1nlfA 134 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29026 1xv5A expands to /projects/compbio/data/pdb/1xv5.pdb.gz 1xv5A:# 1xv5A.30.68 read from T0506.t04.many.frag # adding 1xv5A to template set # found chain 1xv5A in template set Warning: unaligning (T0506)S37 (1xv5A)C1075 because Y (epsilon') conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1xv5A 1068 :ALKLVND T0506 38 :R 1xv5A 1076 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=29028 # 1xpjA.30.32 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 30 :ARDVLHTSR 1xpjA 33 :LREYHQLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29029 # 1yrbA.30.101 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 30 :ARDVLHTSR 1yrbA 88 :ILRLEKEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=29030 1ybdA expands to /projects/compbio/data/pdb/1ybd.pdb.gz 1ybdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ybdA.30.119 read from T0506.t04.many.frag # adding 1ybdA to template set # found chain 1ybdA in template set T0506 30 :ARDVLHTSR 1ybdA 122 :AIQYLEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29031 # 1cnv.30.68 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)S37 (1cnv)G76 because T (delta_L) conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1cnv 69 :IKECQRM T0506 38 :R 1cnv 77 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29033 # 1lw7A.30.21 read from T0506.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0506)S37 (1lw7A)V85 because Y (epsilon') conformation "forbidden" or filtered. T0506 30 :ARDVLHT 1lw7A 78 :IYEAFSK T0506 38 :R 1lw7A 86 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=29035 # 2asfA.30.13 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 30 :ARDVLHTSR 2asfA 14 :ALAFLSERH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29036 # 1iwlA.30.5 read from T0506.t04.many.frag # found chain 1iwlA in training set T0506 30 :ARDVLHTSR 1iwlA 6 :LKSRLDKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29037 # 1mw9X.31.96 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 31 :RDVLHTSRT 1mw9X 97 :KQLAEKADH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29038 # 2f46A.31.94 read from T0506.t04.many.frag # found chain 2f46A in template set T0506 31 :RDVLHTSRT 2f46A 94 :RQLIGQAEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29039 # 2a1rA.31.15 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 31 :RDVLHTSRT 2a1rA 16 :YQAIEEADF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29040 # 2fqxA.31.55 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)S37 (2fqxA)N77 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (2fqxA)M78 because P (beta_P) conformation "forbidden" or filtered. T0506 31 :RDVLHT 2fqxA 71 :SAFADE T0506 39 :T 2fqxA 79 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=29042 # 1iuqA.31.122 read from T0506.t04.many.frag # found chain 1iuqA in training set T0506 31 :RDVLHTSRT 1iuqA 124 :EEKLQQGHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29043 # 1z7xW.31.23 read from T0506.t04.many.frag # found chain 1z7xW in template set T0506 31 :RDVLHTSRT 1z7xW 23 :LPLLQQCQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29044 # 1xv5A.31.69 read from T0506.t04.many.frag # found chain 1xv5A in template set T0506 31 :RDVLHTSRT 1xv5A 1069 :LKLVNDCDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29045 # 1nlfA.31.127 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)T36 (1nlfA)G133 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLH 1nlfA 128 :KRAAE T0506 37 :SRT 1nlfA 134 :RRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29047 # 2a40B.31.25 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 31 :RDVLHTSRT 2a40B 26 :VRIVRRYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29048 # 1lqtA.31.67 read from T0506.t04.many.frag # found chain 1lqtA in training set T0506 31 :RDVLHTSRT 1lqtA 68 :EKTAEDPRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29049 # 1ybdA.31.120 read from T0506.t04.many.frag # found chain 1ybdA in template set T0506 31 :RDVLHTSRT 1ybdA 123 :IQYLEEGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29050 # 2asfA.31.14 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 31 :RDVLHTSRT 2asfA 15 :LAFLSERHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29051 # 2d1pA.31.36 read from T0506.t04.many.frag # found chain 2d1pA in template set Warning: unaligning (T0506)S37 (2d1pA)G31 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 2d1pA 25 :QALIAD T0506 38 :RT 2d1pA 32 :HE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29053 # 1m8jA.31.23 read from T0506.t04.many.frag # found chain 1m8jA in template set T0506 31 :RDVLHTSRT 1m8jA 24 :KSILEEVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29054 # 1nt2A.31.97 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 31 :RDVLHTSRT 1nt2A 98 :LELVRERNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29055 # 1xtpA.31.132 read from T0506.t04.many.frag # found chain 1xtpA in template set Warning: unaligning (T0506)T36 (1xtpA)G138 because L (left) conformation "forbidden" or filtered. T0506 31 :RDVLH 1xtpA 133 :KRELA T0506 37 :SRT 1xtpA 139 :MPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29057 # 2axoA.31.64 read from T0506.t04.many.frag # found chain 2axoA in template set T0506 31 :RDVLHTSRT 2axoA 65 :RKMIQKGDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29058 # 1vjrA.31.145 read from T0506.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0506)S37 (1vjrA)G140 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1vjrA 134 :CILLRK T0506 38 :RT 1vjrA 141 :KF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29060 # 2b8eA.31.115 read from T0506.t04.many.frag # found chain 2b8eA in template set T0506 31 :RDVLHTSRT 2b8eA 522 :EKLEREAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29061 # 1gmxA.31.12 read from T0506.t04.many.frag # found chain 1gmxA in training set Warning: unaligning (T0506)S37 (1gmxA)K19 because L (left) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1gmxA 13 :HQKLQE T0506 38 :RT 1gmxA 20 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29063 # 1k7jA.31.20 read from T0506.t04.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)S37 (1k7jA)G27 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1k7jA 21 :VEIVRK T0506 38 :RT 1k7jA 28 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29065 # 1lw7A.31.22 read from T0506.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0506)H35 (1lw7A)S83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S37 (1lw7A)V85 because Y (epsilon') conformation "forbidden" or filtered. T0506 31 :RDVL 1lw7A 79 :YEAF T0506 36 :T 1lw7A 84 :K T0506 38 :RT 1lw7A 86 :DE Number of specific fragments extracted= 3 number of extra gaps= 2 total=29068 # 2furA.31.25 read from T0506.t04.many.frag # found chain 2furA in template set T0506 31 :RDVLHTSRT 2furA 25 :VAMLDRNFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29069 # 1vk9A.31.21 read from T0506.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0506)R38 (1vk9A)D17 because L (left) conformation "forbidden" or filtered. T0506 31 :RDVLHTS 1vk9A 10 :LKIFEKK T0506 39 :T 1vk9A 18 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29071 # 2f5tX.31.15 read from T0506.t04.many.frag # found chain 2f5tX in template set T0506 31 :RDVLHTSRT 2f5tX 125 :RESLYSAKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29072 # 1hdoA.31.61 read from T0506.t04.many.frag # found chain 1hdoA in training set T0506 31 :RDVLHTSRT 1hdoA 62 :DKTVAGQDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29073 # 1nytA.31.47 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)S37 (1nytA)G54 because T (delta_L) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1nytA 48 :NAFFSA T0506 38 :RT 1nytA 55 :GK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29075 # 1iwlA.31.6 read from T0506.t04.many.frag # found chain 1iwlA in training set Warning: unaligning (T0506)H35 (1iwlA)D11 because G (3-10) conformation "forbidden" or filtered. T0506 31 :RDVL 1iwlA 7 :KSRL T0506 36 :TSRT 1iwlA 12 :KVSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29077 1ir6A expands to /projects/compbio/data/pdb/1ir6.pdb.gz 1ir6A:# 1ir6A.31.26 read from T0506.t04.many.frag # adding 1ir6A to template set # found chain 1ir6A in template set Warning: unaligning (T0506)S37 (1ir6A)G72 because L (left) conformation "forbidden" or filtered. T0506 31 :RDVLHT 1ir6A 66 :EEALRQ T0506 38 :RT 1ir6A 73 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29079 1x9gA expands to /projects/compbio/data/pdb/1x9g.pdb.gz 1x9gA:# 1x9gA.31.100 read from T0506.t04.many.frag # adding 1x9gA to template set # found chain 1x9gA in template set T0506 31 :RDVLHTSRT 1x9gA 93 :EELLEDVDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29080 # 1mw9X.32.97 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 32 :DVLHTSRTA 1mw9X 98 :QLAEKADHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29081 # 2a1rA.32.16 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 32 :DVLHTSRTA 2a1rA 17 :QAIEEADFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29082 # 2fqxA.32.56 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)S37 (2fqxA)N77 because L (left) conformation "forbidden" or filtered. T0506 32 :DVLHT 2fqxA 72 :AFADE T0506 38 :RTA 2fqxA 78 :MGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29084 # 1d4oA.32.16 read from T0506.t04.many.frag # found chain 1d4oA in training set T0506 32 :DVLHTSRTA 1d4oA 17 :DMIREANSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29085 # 1yrbA.32.103 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 32 :DVLHTSRTA 1yrbA 90 :RLEKENDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29086 # 2f46A.32.95 read from T0506.t04.many.frag # found chain 2f46A in template set Warning: unaligning (T0506)S37 (2f46A)A100 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (2f46A)P103 because C (cis) conformation "forbidden" or filtered. T0506 32 :DVLHT 2f46A 95 :QLIGQ T0506 38 :RT 2f46A 101 :EY Number of specific fragments extracted= 2 number of extra gaps= 2 total=29088 # 1xv5A.32.70 read from T0506.t04.many.frag # found chain 1xv5A in template set Warning: unaligning (T0506)S37 (1xv5A)C1075 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1xv5A)L1078 because E (beta_S) conformation "forbidden" or filtered. T0506 32 :DVLHT 1xv5A 1070 :KLVND T0506 38 :RT 1xv5A 1076 :DI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29090 # 2furA.32.26 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)A40 (2furA)C34 because Y (epsilon') conformation "forbidden" or filtered. T0506 32 :DVLHTSRT 2furA 26 :AMLDRNFT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29091 # 2b8eA.32.116 read from T0506.t04.many.frag # found chain 2b8eA in template set Warning: unaligning (T0506)S37 (2b8eA)A528 because L (left) conformation "forbidden" or filtered. T0506 32 :DVLHT 2b8eA 523 :KLERE T0506 38 :RTA 2b8eA 529 :KTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29093 # 1nlfA.32.128 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A40 (1nlfA)M137 because E (beta_S) conformation "forbidden" or filtered. T0506 32 :DVLHTSRT 1nlfA 129 :RAAEGRRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29094 # 2a40B.32.26 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 32 :DVLHTSRTA 2a40B 27 :RIVRRYDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29095 # 1z7xW.32.24 read from T0506.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0506)S37 (1z7xW)C29 because P (beta_P) conformation "forbidden" or filtered. T0506 32 :DVLHT 1z7xW 24 :PLLQQ T0506 38 :RTA 1z7xW 30 :QVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29097 # 1m8jA.32.24 read from T0506.t04.many.frag # found chain 1m8jA in template set T0506 32 :DVLHTSRTA 1m8jA 25 :SILEEVDEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29098 # 1u02A.32.33 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 32 :DVLHTSRTA 1u02A 34 :DLKERFDTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29099 # 1xgkA.32.68 read from T0506.t04.many.frag # found chain 1xgkA in training set T0506 32 :DVLHTSRTA 1xgkA 69 :TLFEGAHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29100 # 1ybdA.32.121 read from T0506.t04.many.frag # found chain 1ybdA in template set Warning: unaligning (T0506)S37 (1ybdA)G129 because T (delta_L) conformation "forbidden" or filtered. T0506 32 :DVLHT 1ybdA 124 :QYLEE T0506 38 :RTA 1ybdA 130 :KVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29102 # 1vl7A.32.24 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 32 :DVLHTSRTA 1vl7A 13 :GFIQEFQSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29103 # 1lqtA.32.68 read from T0506.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0506)R38 (1lqtA)R75 because G (3-10) conformation "forbidden" or filtered. T0506 32 :DVLHTS 1lqtA 69 :KTAEDP T0506 39 :TA 1lqtA 76 :FR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29105 # 1iuqA.32.123 read from T0506.t04.many.frag # found chain 1iuqA in training set T0506 32 :DVLHTSRTA 1iuqA 125 :EKLQQGHNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29106 # 1lw7A.32.23 read from T0506.t04.many.frag # found chain 1lw7A in template set Warning: unaligning (T0506)S37 (1lw7A)V85 because Y (epsilon') conformation "forbidden" or filtered. T0506 32 :DVLHT 1lw7A 80 :EAFSK T0506 38 :RTA 1lw7A 86 :DEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29108 # 1nt2A.32.98 read from T0506.t04.many.frag # found chain 1nt2A in template set T0506 32 :DVLHTSRTA 1nt2A 99 :ELVRERNNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29109 1wzuA expands to /projects/compbio/data/pdb/1wzu.pdb.gz 1wzuA:# 1wzuA.32.8 read from T0506.t04.many.frag # adding 1wzuA to template set # found chain 1wzuA in template set T0506 32 :DVLHTSRTA 1wzuA 9 :RLKEERNAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29110 # 1rttA.32.67 read from T0506.t04.many.frag # found chain 1rttA in training set T0506 32 :DVLHTSRTA 1rttA 68 :EQIRAADAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29111 # 2asfA.32.15 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 32 :DVLHTSRTA 2asfA 16 :AFLSERHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29112 # 2f5tX.32.16 read from T0506.t04.many.frag # found chain 2f5tX in template set Warning: unaligning (T0506)S37 (2f5tX)A131 because P (beta_P) conformation "forbidden" or filtered. T0506 32 :DVLHT 2f5tX 126 :ESLYS T0506 38 :RTA 2f5tX 132 :KNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29114 # 1ir6A.32.27 read from T0506.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0506)S37 (1ir6A)G72 because L (left) conformation "forbidden" or filtered. T0506 32 :DVLHT 1ir6A 67 :EALRQ T0506 38 :RTA 1ir6A 73 :KRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29116 # 2ar0A.32.328 read from T0506.t04.many.frag # found chain 2ar0A in template set T0506 32 :DVLHTSRTA 2ar0A 329 :DLMDKCHLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29117 1jqnA expands to /projects/compbio/data/pdb/1jqn.pdb.gz 1jqnA:# 1jqnA.32.123 read from T0506.t04.many.frag # adding 1jqnA to template set # found chain 1jqnA in template set Warning: unaligning (T0506)A40 (1jqnA)E132 because E (beta_S) conformation "forbidden" or filtered. T0506 32 :DVLHTSRT 1jqnA 124 :KAVESLSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29118 # 1x9gA.32.101 read from T0506.t04.many.frag # found chain 1x9gA in template set Warning: unaligning (T0506)V33 (1x9gA)L95 because G (3-10) conformation "forbidden" or filtered. T0506 32 :D 1x9gA 94 :E T0506 34 :LHTSRTA 1x9gA 96 :LEDVDNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29120 # 1vliA.32.107 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)R38 (1vliA)Q102 because L (left) conformation "forbidden" or filtered. T0506 32 :DVLHTS 1vliA 96 :DYCREK T0506 39 :TA 1vliA 103 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29122 # 1yrbA.33.104 read from T0506.t04.many.frag # found chain 1yrbA in template set Warning: unaligning (T0506)A40 (1yrbA)V98 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHTSRT 1yrbA 91 :LEKENDY T0506 41 :A 1yrbA 99 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29124 # 2furA.33.27 read from T0506.t04.many.frag # found chain 2furA in template set T0506 33 :VLHTSRTAA 2furA 27 :MLDRNFTCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29125 # 1rttA.33.68 read from T0506.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)T39 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 33 :VLHTSR 1rttA 69 :QIRAAD T0506 40 :A 1rttA 76 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=29127 # 1d4oA.33.17 read from T0506.t04.many.frag # found chain 1d4oA in training set T0506 33 :VLHTSRTAA 1d4oA 18 :MIREANSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=29128 # 2b8eA.33.117 read from T0506.t04.many.frag # found chain 2b8eA in template set Warning: unaligning (T0506)S37 (2b8eA)A528 because L (left) conformation "forbidden" or filtered. T0506 33 :VLHT 2b8eA 524 :LERE T0506 38 :RTAA 2b8eA 529 :KTAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29130 # 1wzuA.33.9 read from T0506.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0506)R38 (1wzuA)N15 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1wzuA)I17 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHTS 1wzuA 10 :LKEER T0506 39 :T 1wzuA 16 :A T0506 41 :A 1wzuA 18 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=29133 # 1mw9X.33.98 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 33 :VLHTSRTAA 1mw9X 99 :LAEKADHIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29134 1y08A expands to /projects/compbio/data/pdb/1y08.pdb.gz 1y08A:# 1y08A.33.225 read from T0506.t04.many.frag # adding 1y08A to template set # found chain 1y08A in template set T0506 33 :VLHTSRTAA 1y08A 242 :ELTEGKALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29135 # 2fqxA.33.57 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)S37 (2fqxA)N77 because L (left) conformation "forbidden" or filtered. T0506 33 :VLHT 2fqxA 73 :FADE T0506 38 :RTAA 2fqxA 78 :MGLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29137 # 1nlfA.33.129 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A41 (1nlfA)V138 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHTSRTA 1nlfA 130 :AAEGRRLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=29138 # 1xgkA.33.69 read from T0506.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0506)T36 (1xgkA)G73 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLH 1xgkA 70 :LFE T0506 37 :SRTAA 1xgkA 74 :AHLAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29140 # 1iuqA.33.124 read from T0506.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)S37 (1iuqA)G130 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLHT 1iuqA 126 :KLQQ T0506 38 :RTAA 1iuqA 131 :HNVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29142 # 1xv5A.33.71 read from T0506.t04.many.frag # found chain 1xv5A in template set Warning: unaligning (T0506)S37 (1xv5A)C1075 because Y (epsilon') conformation "forbidden" or filtered. T0506 33 :VLHT 1xv5A 1071 :LVND T0506 38 :RTAA 1xv5A 1076 :DILI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29144 # 2asfA.33.16 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 33 :VLHTSRTAA 2asfA 17 :FLSERHLAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29145 # 1vliA.33.108 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)R38 (1vliA)Q102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1vliA)I104 because P (beta_P) conformation "forbidden" or filtered. T0506 33 :VLHTS 1vliA 97 :YCREK T0506 39 :T 1vliA 103 :V T0506 41 :A 1vliA 105 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=29148 # 1w4rA.33.112 read from T0506.t04.many.frag # found chain 1w4rA in template set T0506 33 :VLHTSRTAA 1w4rA 112 :MANAGKTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29149 # 1z7xW.33.25 read from T0506.t04.many.frag # found chain 1z7xW in template set Warning: unaligning (T0506)A41 (1z7xW)R33 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHTSRTA 1z7xW 25 :LLQQCQVV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29150 # 1uz5A.33.242 read from T0506.t04.many.frag # found chain 1uz5A in template set T0506 33 :VLHTSRTAA 1uz5A 243 :AVNVGDVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29151 # 2a1rA.33.17 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 33 :VLHTSRTAA 2a1rA 18 :AIEEADFFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29152 # 1xttA.33.91 read from T0506.t04.many.frag # found chain 1xttA in training set T0506 33 :VLHTSRTAA 1xttA 92 :AFPKARQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29153 # 1jqnA.33.124 read from T0506.t04.many.frag # found chain 1jqnA in template set T0506 33 :VLHTSRTAA 1jqnA 125 :AVESLSLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29154 # 1ybdA.33.122 read from T0506.t04.many.frag # found chain 1ybdA in template set Warning: unaligning (T0506)S37 (1ybdA)G129 because T (delta_L) conformation "forbidden" or filtered. T0506 33 :VLHT 1ybdA 125 :YLEE T0506 38 :RTAA 1ybdA 130 :KVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29156 # 1ir6A.33.28 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 33 :VLHTSRTAA 1ir6A 68 :ALRQGKRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29157 # 1yt3A.33.17 read from T0506.t04.many.frag # found chain 1yt3A in template set T0506 33 :VLHTSRTAA 1yt3A 18 :AVRAFPAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29158 # 1m8jA.33.25 read from T0506.t04.many.frag # found chain 1m8jA in template set T0506 33 :VLHTSRTAA 1m8jA 26 :ILEEVDELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29159 # 1zs9A.33.141 read from T0506.t04.many.frag # found chain 1zs9A in template set Warning: unaligning (T0506)S37 (1zs9A)G146 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1zs9A)V149 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHT 1zs9A 142 :WREA T0506 38 :RT 1zs9A 147 :MK T0506 41 :A 1zs9A 150 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=29162 # 2a40B.33.27 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 33 :VLHTSRTAA 2a40B 28 :IVRRYDIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29163 2aebA expands to /projects/compbio/data/pdb/2aeb.pdb.gz 2aebA:Skipped atom 2231, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2233, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2235, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2237, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2239, because occupancy 0.290 <= existing 0.710 in 2aebA # 2aebA.33.86 read from T0506.t04.many.frag # adding 2aebA to template set # found chain 2aebA in template set Warning: unaligning (T0506)A41 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. T0506 33 :VLHTSRTA 2aebA 87 :VKKNGRIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29164 # 1lqtA.33.69 read from T0506.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0506)A40 (1lqtA)R77 because E (beta_S) conformation "forbidden" or filtered. T0506 33 :VLHTSRT 1lqtA 70 :TAEDPRF T0506 41 :A 1lqtA 78 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=29166 # 1zuwA.33.24 read from T0506.t04.many.frag # found chain 1zuwA in template set T0506 33 :VLHTSRTAA 1zuwA 25 :QLPKENIIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29167 # 1yrbA.34.105 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 34 :LHTSRTAAL 1yrbA 92 :EKENDYVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29168 # 2dpmA.34.229 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)S37 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 2dpmA 230 :SDT T0506 38 :RTAAL 2dpmA 234 :AYVML Number of specific fragments extracted= 2 number of extra gaps= 1 total=29170 # 1xgkA.34.70 read from T0506.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0506)H35 (1xgkA)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1xgkA)H75 because G (3-10) conformation "forbidden" or filtered. T0506 34 :L 1xgkA 71 :F T0506 36 :TS 1xgkA 73 :GA T0506 39 :TAAL 1xgkA 76 :LAFI Number of specific fragments extracted= 3 number of extra gaps= 2 total=29173 # 2furA.34.28 read from T0506.t04.many.frag # found chain 2furA in template set T0506 34 :LHTSRTAAL 2furA 28 :LDRNFTCTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29174 # 2aebA.34.87 read from T0506.t04.many.frag # found chain 2aebA in template set Warning: unaligning (T0506)S37 (2aebA)G91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. T0506 34 :LHT 2aebA 88 :KKN T0506 38 :RTA 2aebA 92 :RIS T0506 42 :L 2aebA 96 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29177 # 1nlfA.34.130 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)H35 (1nlfA)E132 because P (beta_P) conformation "forbidden" or filtered. T0506 34 :L 1nlfA 131 :A T0506 36 :TSRTAAL 1nlfA 133 :GRRLMVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29179 # 1ir6A.34.29 read from T0506.t04.many.frag # found chain 1ir6A in template set Warning: unaligning (T0506)R38 (1ir6A)K73 because P (beta_P) conformation "forbidden" or filtered. T0506 34 :LHTS 1ir6A 69 :LRQG T0506 39 :TAAL 1ir6A 74 :RIRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29181 # 1w4rA.34.113 read from T0506.t04.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. T0506 34 :LHT 1w4rA 113 :ANA T0506 38 :RTAAL 1w4rA 117 :KTVIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29183 # 1xhnA.34.26 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)H35 (1xhnA)H28 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :L 1xhnA 27 :T T0506 36 :TSRT 1xhnA 29 :VSDW T0506 41 :AL 1xhnA 34 :AL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29186 # 1mw9X.34.99 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 34 :LHTSRTAAL 1mw9X 100 :AEKADHIYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29187 # 1rttA.34.69 read from T0506.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)S37 (1rttA)A73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 34 :LHT 1rttA 70 :IRA T0506 38 :RTA 1rttA 74 :DAL T0506 42 :L 1rttA 78 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=29190 # 1xv5A.34.72 read from T0506.t04.many.frag # found chain 1xv5A in template set T0506 34 :LHTSRTAAL 1xv5A 1072 :VNDCDILII Number of specific fragments extracted= 1 number of extra gaps= 0 total=29191 # 2b8eA.34.118 read from T0506.t04.many.frag # found chain 2b8eA in template set Warning: unaligning (T0506)S37 (2b8eA)A528 because L (left) conformation "forbidden" or filtered. T0506 34 :LHT 2b8eA 525 :ERE T0506 38 :RTAAL 2b8eA 529 :KTAVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29193 # 1uz5A.34.243 read from T0506.t04.many.frag # found chain 1uz5A in template set T0506 34 :LHTSRTAAL 1uz5A 244 :VNVGDVVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29194 # 1y08A.34.226 read from T0506.t04.many.frag # found chain 1y08A in template set T0506 34 :LHTSRTAAL 1y08A 243 :LTEGKALGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29195 # 1iuqA.34.125 read from T0506.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)A41 (1iuqA)V134 because E (beta_S) conformation "forbidden" or filtered. T0506 34 :LHTSRTA 1iuqA 127 :LQQGHNV T0506 42 :L 1iuqA 135 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29197 # 1ty9A.34.52 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)T36 (1ty9A)E55 because L (left) conformation "forbidden" or filtered. T0506 34 :LH 1ty9A 53 :IR T0506 37 :SRTAAL 1ty9A 56 :PRALAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29199 # 1byi.34.105 read from T0506.t04.many.frag # found chain 1byi in training set T0506 34 :LHTSRTAAL 1byi 106 :EQQADWVLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29200 # 1xpjA.34.36 read from T0506.t04.many.frag # found chain 1xpjA in template set T0506 34 :LHTSRTAAL 1xpjA 37 :HQLGFEIVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29201 # 1wzuA.34.10 read from T0506.t04.many.frag # found chain 1wzuA in template set T0506 34 :LHTSRTAAL 1wzuA 11 :KEERNAIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29202 # 2asfA.34.17 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 34 :LHTSRTAAL 2asfA 18 :LSERHLAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=29203 # 1flmA.34.9 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)S37 (1flmA)E13 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1flmA)G14 because Y (epsilon') conformation "forbidden" or filtered. T0506 34 :LHT 1flmA 10 :LKN T0506 39 :TAAL 1flmA 15 :VVAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29205 # 2a40B.34.28 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 34 :LHTSRTAAL 2a40B 29 :VRRYDIVLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29206 # 1orc.34.33 read from T0506.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0506)S37 (1orc)G37 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1orc)I40 because E (beta_S) conformation "forbidden" or filtered. T0506 34 :LHT 1orc 34 :IHA T0506 38 :RT 1orc 38 :RK T0506 41 :AL 1orc 41 :FL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29209 # 1z7xW.34.26 read from T0506.t04.many.frag # found chain 1z7xW in template set T0506 34 :LHTSRTAAL 1z7xW 26 :LQQCQVVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29210 # 1yt3A.34.18 read from T0506.t04.many.frag # found chain 1yt3A in template set T0506 34 :LHTSRTAAL 1yt3A 19 :VRAFPAIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29211 # 1lqtA.34.70 read from T0506.t04.many.frag # found chain 1lqtA in training set T0506 34 :LHTSRTAAL 1lqtA 71 :AEDPRFRFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29212 # 1m8jA.34.26 read from T0506.t04.many.frag # found chain 1m8jA in template set T0506 34 :LHTSRTAAL 1m8jA 27 :LEEVDELII Number of specific fragments extracted= 1 number of extra gaps= 0 total=29213 1z5zA expands to /projects/compbio/data/pdb/1z5z.pdb.gz 1z5zA:# 1z5zA.34.108 read from T0506.t04.many.frag # adding 1z5zA to template set # found chain 1z5zA in template set T0506 34 :LHTSRTAAL 1z5zA 744 :LDEGDKIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29214 # 1d4oA.34.18 read from T0506.t04.many.frag # found chain 1d4oA in training set T0506 34 :LHTSRTAAL 1d4oA 19 :IREANSIII Number of specific fragments extracted= 1 number of extra gaps= 0 total=29215 # 1xhnA.35.27 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)H35 (1xhnA)H28 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1xhnA)D31 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :TS 1xhnA 29 :VS T0506 39 :T 1xhnA 32 :W T0506 41 :ALA 1xhnA 34 :ALA Number of specific fragments extracted= 3 number of extra gaps= 3 total=29218 # 2furA.35.29 read from T0506.t04.many.frag # found chain 2furA in template set T0506 35 :HTSRTAALA 2furA 29 :DRNFTCTVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29219 # 1ty9A.35.53 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)T36 (1ty9A)E55 because L (left) conformation "forbidden" or filtered. T0506 35 :H 1ty9A 54 :R T0506 37 :SRTAALA 1ty9A 56 :PRALALA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29221 # 1mw9X.35.100 read from T0506.t04.many.frag # found chain 1mw9X in training set Warning: unaligning (T0506)A40 (1mw9X)I106 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HTSRT 1mw9X 101 :EKADH T0506 41 :ALA 1mw9X 107 :YLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29223 # 1yrbA.35.106 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 35 :HTSRTAALA 1yrbA 93 :KENDYVLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=29224 # 2asfA.35.18 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 35 :HTSRTAALA 2asfA 19 :SERHLAMLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29225 # 1nlfA.35.131 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)T36 (1nlfA)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 T0506 35 :H 1nlfA 132 :E T0506 37 :SRTAAL 1nlfA 134 :RRLMVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29227 # 1xgkA.35.71 read from T0506.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0506)H35 (1xgkA)E72 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T36 (1xgkA)G73 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1xgkA)N80 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRTAAL 1xgkA 74 :AHLAFI Number of specific fragments extracted= 1 number of extra gaps= 2 total=29228 # 2aebA.35.88 read from T0506.t04.many.frag # found chain 2aebA in template set Warning: unaligning (T0506)S37 (2aebA)G91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. T0506 35 :HT 2aebA 89 :KN T0506 38 :RTA 2aebA 92 :RIS T0506 42 :LA 2aebA 96 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29231 # 1vl7A.35.27 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 35 :HTSRTAALA 1vl7A 16 :QEFQSAIIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29232 # 1rttA.35.70 read from T0506.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)T39 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. T0506 35 :HTSR 1rttA 71 :RAAD T0506 40 :AALA 1rttA 76 :LLFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29234 # 1uz5A.35.244 read from T0506.t04.many.frag # found chain 1uz5A in template set T0506 35 :HTSRTAALA 1uz5A 245 :NVGDVVVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29235 # 2a40B.35.29 read from T0506.t04.many.frag # found chain 2a40B in template set T0506 35 :HTSRTAALA 2a40B 30 :RRYDIVLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29236 # 1m8jA.35.27 read from T0506.t04.many.frag # found chain 1m8jA in template set Warning: unaligning (T0506)A43 (1m8jA)C36 because P (beta_P) conformation "forbidden" or filtered. T0506 35 :HTSRTAAL 1m8jA 28 :EEVDELII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29237 # 2dpmA.35.230 read from T0506.t04.many.frag # found chain 2dpmA in training set T0506 35 :HTSRTAALA 2dpmA 231 :DTGAYVMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29238 # 1e58A.35.172 read from T0506.t04.many.frag # found chain 1e58A in training set T0506 35 :HTSRTAALA 1e58A 173 :KSGERVIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29239 # 1w4rA.35.114 read from T0506.t04.many.frag # found chain 1w4rA in template set Warning: unaligning (T0506)S37 (1w4rA)G116 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1w4rA)I120 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1w4rA)A122 because P (beta_P) conformation "forbidden" or filtered. T0506 35 :HT 1w4rA 114 :NA T0506 38 :RTA 1w4rA 117 :KTV T0506 42 :L 1w4rA 121 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=29242 # 1iuqA.35.126 read from T0506.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)S37 (1iuqA)G130 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1iuqA)V134 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HT 1iuqA 128 :QQ T0506 38 :RTA 1iuqA 131 :HNV T0506 42 :LA 1iuqA 135 :LI Number of specific fragments extracted= 3 number of extra gaps= 2 total=29245 # 2a84A.35.28 read from T0506.t04.many.frag # found chain 2a84A in template set Warning: unaligning (T0506)T36 (2a84A)T30 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (2a84A)V34 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :H 2a84A 29 :L T0506 37 :SRT 2a84A 31 :GRR T0506 41 :ALA 2a84A 35 :MLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29248 # 1hdoA.35.65 read from T0506.t04.many.frag # found chain 1hdoA in training set Warning: unaligning (T0506)S37 (1hdoA)Q68 because P (beta_P) conformation "forbidden" or filtered. T0506 35 :HT 1hdoA 66 :AG T0506 38 :RTAALA 1hdoA 69 :DAVIVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29250 # 1y08A.35.227 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)S37 (1y08A)G246 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1y08A)G250 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HT 1y08A 244 :TE T0506 38 :RTA 1y08A 247 :KAL T0506 42 :LA 1y08A 251 :LS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29253 # 1xv5A.35.73 read from T0506.t04.many.frag # found chain 1xv5A in template set Warning: unaligning (T0506)A41 (1xv5A)I1079 because E (beta_S) conformation "forbidden" or filtered. T0506 35 :HTSRTA 1xv5A 1073 :NDCDIL T0506 42 :LA 1xv5A 1080 :IN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29255 # 1z5zA.35.109 read from T0506.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0506)S37 (1z5zA)G747 because L (left) conformation "forbidden" or filtered. T0506 35 :HT 1z5zA 745 :DE T0506 38 :RTAALA 1z5zA 748 :DKIAIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29257 # 1wzuA.35.11 read from T0506.t04.many.frag # found chain 1wzuA in template set Warning: unaligning (T0506)R38 (1wzuA)N15 because L (left) conformation "forbidden" or filtered. T0506 35 :HTS 1wzuA 12 :EER T0506 39 :TAALA 1wzuA 16 :AIILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29259 # 1byi.35.106 read from T0506.t04.many.frag # found chain 1byi in training set T0506 35 :HTSRTAALA 1byi 107 :QQADWVLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29260 1ua4A expands to /projects/compbio/data/pdb/1ua4.pdb.gz 1ua4A:# 1ua4A.35.19 read from T0506.t04.many.frag # adding 1ua4A to template set # found chain 1ua4A in template set Warning: unaligning (T0506)T39 (1ua4A)G24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1ua4A)Y29 T0506 35 :HTSR 1ua4A 20 :PKVK T0506 40 :AAL 1ua4A 25 :VLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29262 1id1A expands to /projects/compbio/data/pdb/1id1.pdb.gz 1id1A:# 1id1A.35.23 read from T0506.t04.many.frag # adding 1id1A to template set # found chain 1id1A in template set Warning: unaligning (T0506)S37 (1id1A)G28 because T (delta_L) conformation "forbidden" or filtered. T0506 35 :HT 1id1A 26 :QR T0506 38 :RTAALA 1id1A 29 :QNVTVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29264 # 2ahrA.35.58 read from T0506.t04.many.frag # found chain 2ahrA in template set T0506 35 :HTSRTAALA 2ahrA 56 :DQVDLVILG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29265 # 1d4oA.35.19 read from T0506.t04.many.frag # found chain 1d4oA in training set Warning: unaligning (T0506)A43 (1d4oA)T28 because D (zeta) conformation "forbidden" or filtered. T0506 35 :HTSRTAAL 1d4oA 20 :REANSIII Number of specific fragments extracted= 1 number of extra gaps= 1 total=29266 # 1moq.35.49 read from T0506.t04.many.frag # found chain 1moq in training set T0506 35 :HTSRTAALA 1moq 290 :SKVEHIQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29267 # 2furA.36.30 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)T44 (2furA)F38 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :TSRTAALA 2furA 30 :RNFTCTVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29268 # 1xhnA.36.28 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)T39 (1xhnA)W32 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :TSR 1xhnA 29 :VSD T0506 40 :AALAT 1xhnA 33 :GALAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29270 # 2asfA.36.19 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 36 :TSRTAALAT 2asfA 20 :ERHLAMLTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29271 # 1ty9A.36.54 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)T36 (1ty9A)E55 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1ty9A)L59 because P (beta_P) conformation "forbidden" or filtered. T0506 37 :SRT 1ty9A 56 :PRA T0506 41 :ALAT 1ty9A 60 :ALAT Number of specific fragments extracted= 2 number of extra gaps= 2 total=29273 # 1vl7A.36.28 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 36 :TSRTAALAT 1vl7A 17 :EFQSAIIST Number of specific fragments extracted= 1 number of extra gaps= 0 total=29274 # 1xgkA.36.72 read from T0506.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0506)T36 (1xgkA)G73 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1xgkA)N80 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRTAAL 1xgkA 74 :AHLAFI T0506 44 :T 1xgkA 81 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=29276 # 2fqxA.36.60 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)S37 (2fqxA)N77 because L (left) conformation "forbidden" or filtered. T0506 36 :T 2fqxA 76 :E T0506 38 :RTAALAT 2fqxA 78 :MGLVVAC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29278 # 1yrbA.36.107 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 36 :TSRTAALAT 1yrbA 94 :ENDYVLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29279 # 1flmA.36.11 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R38 (1flmA)G14 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :TS 1flmA 12 :NE T0506 39 :TAALAT 1flmA 15 :VVAIAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29281 # 2dpmA.36.231 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)S37 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T44 (2dpmA)N240 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :T 2dpmA 232 :T T0506 38 :RTAALA 2dpmA 234 :AYVMLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=29283 # 1e58A.36.173 read from T0506.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0506)A41 (1e58A)I179 because E (beta_S) conformation "forbidden" or filtered. T0506 36 :TSRTA 1e58A 174 :SGERV T0506 42 :LAT 1e58A 180 :IAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29285 # 1reqB.36.129 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)A40 (1reqB)S135 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :TSRT 1reqB 131 :RGVT T0506 41 :ALAT 1reqB 136 :LLLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29287 # 1m8jA.36.28 read from T0506.t04.many.frag # found chain 1m8jA in template set Warning: unaligning (T0506)A41 (1m8jA)I34 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1m8jA)C36 because P (beta_P) conformation "forbidden" or filtered. T0506 36 :TSRTA 1m8jA 29 :EVDEL T0506 42 :L 1m8jA 35 :I T0506 44 :T 1m8jA 37 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=29290 # 1ylnA.36.37 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)T36 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ylnA)S40 Warning: unaligning (T0506)S37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ylnA)S40 Warning: unaligning (T0506)A40 (1ylnA)L42 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :T 1ylnA 41 :E T0506 41 :ALAT 1ylnA 43 :TLSI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29292 1wtjA expands to /projects/compbio/data/pdb/1wtj.pdb.gz 1wtjA:# 1wtjA.36.112 read from T0506.t04.many.frag # adding 1wtjA to template set # found chain 1wtjA in template set T0506 36 :TSRTAALAT 1wtjA 113 :SAGVAILAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29293 # 1nlfA.36.132 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A40 (1nlfA)M137 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 T0506 36 :TSRT 1nlfA 133 :GRRL T0506 41 :AL 1nlfA 138 :VL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29295 # 1ua4A.36.20 read from T0506.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0506)A40 (1ua4A)V25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1ua4A)Y29 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1ua4A)Y29 T0506 36 :TSRT 1ua4A 21 :KVKG T0506 41 :AL 1ua4A 26 :LL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29297 # 1jalA.36.198 read from T0506.t04.many.frag # found chain 1jalA in template set T0506 36 :TSRTAALAT 1jalA 199 :LKPTMYIAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29298 # 1rttA.36.71 read from T0506.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 36 :TSRTA 1rttA 72 :AADAL T0506 42 :LAT 1rttA 78 :FAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29300 # 1xpjA.36.38 read from T0506.t04.many.frag # found chain 1xpjA in template set Warning: unaligning (T0506)S37 (1xpjA)G40 because T (delta_L) conformation "forbidden" or filtered. T0506 36 :T 1xpjA 39 :L T0506 38 :RTAALAT 1xpjA 41 :FEIVIST Number of specific fragments extracted= 2 number of extra gaps= 1 total=29302 # 2aebA.36.89 read from T0506.t04.many.frag # found chain 2aebA in template set Warning: unaligning (T0506)S37 (2aebA)G91 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (2aebA)L95 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 T0506 36 :T 2aebA 90 :N T0506 38 :RTA 2aebA 92 :RIS T0506 42 :LA 2aebA 96 :VL Number of specific fragments extracted= 3 number of extra gaps= 3 total=29305 # 1jx6A.36.102 read from T0506.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0506)S37 (1jx6A)K127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1jx6A)F133 because Y (epsilon') conformation "forbidden" or filtered. T0506 36 :T 1jx6A 126 :S T0506 38 :RTAAL 1jx6A 128 :SDYLI T0506 44 :T 1jx6A 134 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=29308 # 1w9hA.36.105 read from T0506.t04.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)S37 (1w9hA)G107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1w9hA)I111 because E (beta_S) conformation "forbidden" or filtered. T0506 36 :T 1w9hA 106 :T T0506 38 :RT 1w9hA 108 :VD T0506 42 :LAT 1w9hA 112 :MLV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29311 # 1t71A.36.173 read from T0506.t04.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A40 (1t71A)T178 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1t71A)I179 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1t71A)G181 because P (beta_P) conformation "forbidden" or filtered. T0506 36 :TSRT 1t71A 174 :GYVT T0506 42 :L 1t71A 180 :F T0506 44 :T 1t71A 182 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=29314 # 1z5zA.36.110 read from T0506.t04.many.frag # found chain 1z5zA in template set Warning: unaligning (T0506)S37 (1z5zA)G747 because L (left) conformation "forbidden" or filtered. T0506 36 :T 1z5zA 746 :E T0506 38 :RTAALAT 1z5zA 748 :DKIAIFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29316 # 1mw9X.36.101 read from T0506.t04.many.frag # found chain 1mw9X in training set Warning: unaligning (T0506)A40 (1mw9X)I106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1mw9X)Y107 because E (beta_S) conformation "forbidden" or filtered. T0506 36 :TSRT 1mw9X 102 :KADH T0506 42 :LAT 1mw9X 108 :LAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29318 # 1pzxA.36.79 read from T0506.t04.many.frag # found chain 1pzxA in template set Warning: unaligning (T0506)S37 (1pzxA)N79 because L (left) conformation "forbidden" or filtered. T0506 36 :T 1pzxA 78 :E T0506 38 :RTAALAT 1pzxA 80 :RPCLYIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29320 # 1f9vA.36.82 read from T0506.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0506)A43 (1f9vA)A472 because P (beta_P) conformation "forbidden" or filtered. T0506 36 :TSRTAAL 1f9vA 465 :GYNVCIF T0506 44 :T 1f9vA 473 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=29322 # 1uz5A.36.245 read from T0506.t04.many.frag # found chain 1uz5A in template set T0506 36 :TSRTAALAT 1uz5A 246 :VGDVVVISG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29323 1tf5A expands to /projects/compbio/data/pdb/1tf5.pdb.gz 1tf5A:# 1tf5A.36.430 read from T0506.t04.many.frag # adding 1tf5A to template set # found chain 1tf5A in template set Warning: unaligning (T0506)S37 (1tf5A)G429 because T (delta_L) conformation "forbidden" or filtered. T0506 36 :T 1tf5A 428 :T T0506 38 :RTAALAT 1tf5A 430 :QPVLVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29325 # 1xhnA.37.29 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 37 :SRT 1xhnA 30 :SDW T0506 41 :ALATL 1xhnA 34 :ALATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29327 # 2furA.37.31 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)A40 (2furA)C34 because Y (epsilon') conformation "forbidden" or filtered. T0506 37 :SRT 2furA 31 :NFT T0506 41 :ALATL 2furA 35 :TVSFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29329 # 2asfA.37.20 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A40 (2asfA)A24 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (2asfA)T27 because E (beta_S) conformation "forbidden" or filtered. T0506 37 :SRT 2asfA 21 :RHL T0506 41 :AL 2asfA 25 :ML T0506 44 :TL 2asfA 28 :TL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29332 # 1vl7A.37.29 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 37 :SRTAALATL 1vl7A 18 :FQSAIISTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29333 # 1ty9A.37.55 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 37 :SRTAALATL 1ty9A 56 :PRALALATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29334 # 1jalA.37.199 read from T0506.t04.many.frag # found chain 1jalA in template set T0506 37 :SRTAALATL 1jalA 200 :KPTMYIANV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29335 # 1xgkA.37.73 read from T0506.t04.many.frag # found chain 1xgkA in training set T0506 37 :SRTAALATL 1xgkA 74 :AHLAFINTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29336 # 2akaA.37.181 read from T0506.t04.many.frag # found chain 2akaA in template set Warning: unaligning (T0506)L45 (2akaA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0506 37 :SRTAALAT 2akaA 171 :QNQSLLIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29337 # 1flmA.37.12 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R38 (1flmA)G14 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1flmA)V16 because P (beta_P) conformation "forbidden" or filtered. T0506 37 :S 1flmA 13 :E T0506 39 :T 1flmA 15 :V T0506 41 :ALATL 1flmA 17 :AIATQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=29340 # 1reqB.37.130 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)T39 (1reqB)T134 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1reqB)S135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1reqB)L138 because E (beta_S) conformation "forbidden" or filtered. T0506 37 :SR 1reqB 132 :GV T0506 41 :AL 1reqB 136 :LL T0506 44 :TL 1reqB 139 :RV Number of specific fragments extracted= 3 number of extra gaps= 2 total=29343 # 1f9vA.37.83 read from T0506.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0506)A43 (1f9vA)A472 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1f9vA)G474 because Y (epsilon') conformation "forbidden" or filtered. T0506 37 :SRTAAL 1f9vA 466 :YNVCIF T0506 44 :T 1f9vA 473 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=29345 # 2fqxA.37.61 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)L45 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0506 37 :SRTAALAT 2fqxA 77 :NMGLVVAC Number of specific fragments extracted= 1 number of extra gaps= 1 total=29346 # 1tf5A.37.431 read from T0506.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0506)S37 (1tf5A)G429 because T (delta_L) conformation "forbidden" or filtered. T0506 38 :RTAALATL 1tf5A 430 :QPVLVGTV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29347 # 1yrbA.37.108 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 37 :SRTAALATL 1yrbA 95 :NDYVLIDTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29348 # 1nlfA.37.133 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 T0506 37 :SRTAAL 1nlfA 134 :RRLMVL T0506 45 :L 1nlfA 142 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29350 # 1ylnA.37.38 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)S37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ylnA)S40 T0506 39 :TAALATL 1ylnA 41 :ELTLSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29351 # 2dpmA.37.232 read from T0506.t04.many.frag # found chain 2dpmA in training set Warning: unaligning (T0506)S37 (2dpmA)G233 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T44 (2dpmA)N240 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RTAALA 2dpmA 234 :AYVMLS T0506 45 :L 2dpmA 241 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=29353 # 1h1nA.37.84 read from T0506.t04.many.frag # found chain 1h1nA in training set Warning: unaligning (T0506)A43 (1h1nA)D91 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1h1nA)N94 T0506 37 :SRTAAL 1h1nA 85 :GAYAVV T0506 44 :T 1h1nA 92 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=29355 # 1t71A.37.174 read from T0506.t04.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)A41 (1t71A)I179 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRTA 1t71A 175 :YVTT T0506 42 :LATL 1t71A 180 :FGTH Number of specific fragments extracted= 2 number of extra gaps= 1 total=29357 # 1rttA.37.72 read from T0506.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRTA 1rttA 73 :ADAL T0506 42 :LATL 1rttA 78 :FATP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29359 # 1ye8A.37.128 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 37 :SRTAALATL 1ye8A 129 :PNVNVVATI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29360 1mvlA expands to /projects/compbio/data/pdb/1mvl.pdb.gz 1mvlA:# 1mvlA.37.18 read from T0506.t04.many.frag # adding 1mvlA to template set # found chain 1mvlA in template set Warning: unaligning (T0506)S37 because first residue in template chain is (1mvlA)K19 Warning: unaligning (T0506)A41 (1mvlA)L23 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RTA 1mvlA 20 :PRV T0506 42 :LATL 1mvlA 24 :LAAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29362 # 1wtjA.37.113 read from T0506.t04.many.frag # found chain 1wtjA in template set Warning: unaligning (T0506)A43 (1wtjA)A120 because D (zeta) conformation "forbidden" or filtered. T0506 37 :SRTAAL 1wtjA 114 :AGVAIL T0506 44 :TL 1wtjA 121 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29364 # 1jqnA.37.128 read from T0506.t04.many.frag # found chain 1jqnA in template set T0506 37 :SRTAALATL 1jqnA 129 :LSLELVLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29365 # 1jx6A.37.103 read from T0506.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0506)S37 (1jx6A)K127 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1jx6A)S128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1jx6A)F133 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :TAAL 1jx6A 129 :DYLI T0506 44 :TL 1jx6A 134 :TL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29367 # 1bykA.37.57 read from T0506.t04.many.frag # found chain 1bykA in template set Warning: unaligning (T0506)S37 (1bykA)N118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R38 (1bykA)I119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1bykA)G121 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :T 1bykA 120 :D T0506 41 :ALATL 1bykA 122 :VVLFG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29369 # 1o97D.37.32 read from T0506.t04.many.frag # found chain 1o97D in training set T0506 37 :SRTAALATL 1o97D 33 :EDKVVVAVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29370 # 1w9hA.37.106 read from T0506.t04.many.frag # found chain 1w9hA in template set Warning: unaligning (T0506)S37 (1w9hA)G107 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (1w9hA)G110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1w9hA)I111 because E (beta_S) conformation "forbidden" or filtered. T0506 38 :RT 1w9hA 108 :VD T0506 42 :LATL 1w9hA 112 :MLVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29372 # 1uz5A.37.246 read from T0506.t04.many.frag # found chain 1uz5A in template set Warning: unaligning (T0506)A41 (1uz5A)V251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T44 (1uz5A)G254 because T (delta_L) conformation "forbidden" or filtered. T0506 37 :SRTA 1uz5A 247 :GDVV T0506 42 :LA 1uz5A 252 :IS T0506 45 :L 1uz5A 255 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=29375 # 1kwgA.37.63 read from T0506.t04.many.frag # found chain 1kwgA in training set T0506 37 :SRTAALATL 1kwgA 64 :GLKVVLGTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29376 # 1xhnA.38.30 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RT 1xhnA 31 :DW T0506 41 :ALATLD 1xhnA 34 :ALATIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29378 # 1vl7A.38.30 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)R38 (1vl7A)Q19 because G (3-10) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1vl7A 20 :SAIISTIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29379 # 2asfA.38.21 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A41 (2asfA)M25 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RTA 2asfA 22 :HLA T0506 42 :LATLD 2asfA 26 :LTTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29381 # 1ty9A.38.56 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 38 :RTAALATLD 1ty9A 57 :RALALATAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29382 # 1jalA.38.200 read from T0506.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0506)R38 (1jalA)P201 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1jalA 202 :TMYIANVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29383 # 2furA.38.32 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)R38 (2furA)F32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A40 (2furA)C34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (2furA)D40 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :T 2furA 33 :T T0506 41 :ALATL 2furA 35 :TVSFI Number of specific fragments extracted= 2 number of extra gaps= 3 total=29385 # 1flmA.38.13 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 38 :RTAALATLD 1flmA 14 :GVVAIATQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29386 # 1f9vA.38.84 read from T0506.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0506)A43 (1f9vA)A472 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RTAAL 1f9vA 467 :NVCIF T0506 44 :TLD 1f9vA 473 :YGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29388 # 1xgkA.38.74 read from T0506.t04.many.frag # found chain 1xgkA in training set T0506 38 :RTAALATLD 1xgkA 75 :HLAFINTTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29389 # 1tf5A.38.432 read from T0506.t04.many.frag # found chain 1tf5A in template set T0506 38 :RTAALATLD 1tf5A 430 :QPVLVGTVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29390 # 2akaA.38.182 read from T0506.t04.many.frag # found chain 2akaA in template set Warning: unaligning (T0506)L45 (2akaA)G179 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RTAALAT 2akaA 172 :NQSLLIT T0506 46 :D 2akaA 180 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29392 # 2fqxA.38.62 read from T0506.t04.many.frag # found chain 2fqxA in template set T0506 38 :RTAALATLD 2fqxA 78 :MGLVVACGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29393 # 1reqB.38.131 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)A40 (1reqB)S135 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RT 1reqB 133 :VT T0506 41 :ALATLD 1reqB 136 :LLLRVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29395 # 1o97D.38.33 read from T0506.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0506)D46 (1o97D)G42 because Y (epsilon') conformation "forbidden" or filtered. T0506 38 :RTAALATL 1o97D 34 :DKVVVAVI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29396 # 1nlfA.38.134 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 T0506 38 :RTAAL 1nlfA 135 :RLMVL T0506 45 :LD 1nlfA 142 :LR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29398 # 1ye8A.38.129 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 38 :RTAALATLD 1ye8A 130 :NVNVVATIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29399 # 1ylnA.38.39 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)D46 (1ylnA)T48 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATL 1ylnA 41 :ELTLSIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29400 # 1yrbA.38.109 read from T0506.t04.many.frag # found chain 1yrbA in template set Warning: unaligning (T0506)A40 (1yrbA)V98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1yrbA)D101 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RT 1yrbA 96 :DY T0506 41 :AL 1yrbA 99 :LI T0506 44 :TLD 1yrbA 102 :TPG Number of specific fragments extracted= 3 number of extra gaps= 2 total=29403 # 1mvlA.38.19 read from T0506.t04.many.frag # found chain 1mvlA in template set T0506 38 :RTAALATLD 1mvlA 20 :PRVLLAASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29404 # 1rttA.38.73 read from T0506.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)A40 (1rttA)L76 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. T0506 38 :RT 1rttA 74 :DA T0506 42 :LATLD 1rttA 78 :FATPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29406 # 1kwgA.38.64 read from T0506.t04.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)A40 (1kwgA)V67 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RT 1kwgA 65 :LK T0506 41 :ALATLD 1kwgA 68 :VLGTPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29408 # 1cnv.38.76 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)A43 (1cnv)A82 because P (beta_P) conformation "forbidden" or filtered. T0506 38 :RTAAL 1cnv 77 :VKVFL T0506 44 :TLD 1cnv 83 :LGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29410 # 8abp.38.58 read from T0506.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A40 (8abp)F61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (8abp)C64 because D (zeta) conformation "forbidden" or filtered. T0506 38 :RT 8abp 59 :KG T0506 41 :AL 8abp 62 :VI T0506 44 :TLD 8abp 65 :TPD Number of specific fragments extracted= 3 number of extra gaps= 2 total=29413 # 1uz5A.38.247 read from T0506.t04.many.frag # found chain 1uz5A in template set Warning: unaligning (T0506)A43 (1uz5A)S253 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uz5A)D262 T0506 38 :RTAAL 1uz5A 248 :DVVVI T0506 44 :TL 1uz5A 254 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29415 # 1a5t.38.138 read from T0506.t04.many.frag # found chain 1a5t in template set T0506 38 :RTAALATLD 1a5t 139 :TWFFLATRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29416 1m4tA expands to /projects/compbio/data/pdb/1m4t.pdb.gz 1m4tA:Bad short name: CA1 for alphabet: pdb_atoms Bad short name: CA2 for alphabet: pdb_atoms Bad short name: OA1 for alphabet: pdb_atoms Bad short name: CA3 for alphabet: pdb_atoms Bad short name: CA4 for alphabet: pdb_atoms Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 1m4tA Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 1m4tA # 1m4tA.38.49 read from T0506.t04.many.frag # adding 1m4tA to template set # found chain 1m4tA in template set T0506 38 :RTAALATLD 1m4tA 50 :NEVILGQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29417 # 1iuqA.38.129 read from T0506.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)T44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1iuqA)N138 Warning: unaligning (T0506)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1iuqA)N138 T0506 38 :RTAALA 1iuqA 131 :HNVVLI T0506 46 :D 1iuqA 139 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=29419 # 1h1nA.38.85 read from T0506.t04.many.frag # found chain 1h1nA in training set Warning: unaligning (T0506)A43 (1h1nA)D91 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1h1nA)N94 Warning: unaligning (T0506)D46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1h1nA)N94 T0506 38 :RTAAL 1h1nA 86 :AYAVV T0506 44 :T 1h1nA 92 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=29421 # 1ukfA.38.117 read from T0506.t04.many.frag # found chain 1ukfA in training set T0506 38 :RTAALATLD 1ukfA 198 :RKHLLSLRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29422 # 1y08A.38.230 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)D46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1y08A)R259 T0506 38 :RTAALATL 1y08A 247 :KALGLSHT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29423 # 1xhnA.39.31 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A40 (1xhnA)G33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1xhnA)S39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1xhnA)T40 because G (3-10) conformation "forbidden" or filtered. T0506 39 :T 1xhnA 32 :W T0506 41 :ALATL 1xhnA 34 :ALATI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29425 # 1vl7A.39.31 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D46 (1vl7A)S27 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATL 1vl7A 20 :SAIISTI T0506 47 :P 1vl7A 28 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29427 # 2asfA.39.22 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)D46 (2asfA)R30 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAALATL 2asfA 23 :LAMLTTL T0506 47 :P 2asfA 31 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=29429 # 1ty9A.39.57 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 39 :TAALATLDP 1ty9A 58 :ALALATADS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29430 # 1jalA.39.201 read from T0506.t04.many.frag # found chain 1jalA in template set T0506 39 :TAALATLDP 1jalA 202 :TMYIANVNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29431 # 1f9vA.39.85 read from T0506.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0506)L45 (1f9vA)G474 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :TAALAT 1f9vA 468 :VCIFAY T0506 46 :DP 1f9vA 475 :QT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29433 # 1tf5A.39.433 read from T0506.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0506)A41 (1tf5A)L433 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1tf5A)A438 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TA 1tf5A 431 :PV T0506 42 :LATL 1tf5A 434 :VGTV T0506 47 :P 1tf5A 439 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29436 # 1reqB.39.132 read from T0506.t04.many.frag # found chain 1reqB in template set Warning: unaligning (T0506)D46 (1reqB)D141 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :TAALATL 1reqB 134 :TSLLLRV T0506 47 :P 1reqB 142 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=29438 # 1flmA.39.14 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 39 :TAALATLDP 1flmA 15 :VVAIATQGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29439 # 1ye8A.39.130 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 39 :TAALATLDP 1ye8A 131 :VNVVATIPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29440 # 1a5t.39.139 read from T0506.t04.many.frag # found chain 1a5t in template set T0506 39 :TAALATLDP 1a5t 140 :WFFLATREP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29441 # 2fqxA.39.63 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)L45 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0506 39 :TAALAT 2fqxA 79 :GLVVAC T0506 46 :DP 2fqxA 86 :SF Number of specific fragments extracted= 2 number of extra gaps= 1 total=29443 # 1vpqA.39.120 read from T0506.t04.many.frag # found chain 1vpqA in template set Warning: unaligning (T0506)A40 (1vpqA)M110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1vpqA)P116 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :T 1vpqA 109 :K T0506 41 :ALATL 1vpqA 111 :TLAQF T0506 47 :P 1vpqA 117 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=29446 # 1yrbA.39.110 read from T0506.t04.many.frag # found chain 1yrbA in template set T0506 39 :TAALATLDP 1yrbA 97 :YVLIDTPGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29447 # 1xgkA.39.75 read from T0506.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0506)A43 (1xgkA)N80 because D (zeta) conformation "forbidden" or filtered. T0506 39 :TAAL 1xgkA 76 :LAFI T0506 44 :TLDP 1xgkA 81 :TTSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29449 # 2furA.39.33 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)A43 (2furA)S37 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 39 :TAAL 2furA 33 :TCTV T0506 44 :TLD 2furA 38 :FID Number of specific fragments extracted= 2 number of extra gaps= 2 total=29451 # 1rttA.39.74 read from T0506.t04.many.frag # found chain 1rttA in training set Warning: unaligning (T0506)T39 (1rttA)A75 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A41 (1rttA)L77 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1rttA)Y83 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :A 1rttA 76 :L T0506 42 :LATLD 1rttA 78 :FATPE Number of specific fragments extracted= 2 number of extra gaps= 3 total=29453 # 1o97D.39.34 read from T0506.t04.many.frag # found chain 1o97D in training set T0506 39 :TAALATLDP 1o97D 35 :KVVVAVIGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29454 # 1ylnA.39.40 read from T0506.t04.many.frag # found chain 1ylnA in template set T0506 39 :TAALATLDP 1ylnA 41 :ELTLSITTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29455 # 1nlfA.39.135 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)A43 because of BadResidue code BAD_PEPTIDE in next template residue (1nlfA)T141 Warning: unaligning (T0506)T44 because of BadResidue code BAD_PEPTIDE at template residue (1nlfA)T141 Warning: unaligning (T0506)P47 (1nlfA)R144 because G (3-10) conformation "forbidden" or filtered. T0506 39 :TAAL 1nlfA 136 :LMVL T0506 45 :LD 1nlfA 142 :LR Number of specific fragments extracted= 2 number of extra gaps= 2 total=29457 # 1m4tA.39.50 read from T0506.t04.many.frag # found chain 1m4tA in template set Warning: unaligning (T0506)A43 (1m4tA)G55 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :TAAL 1m4tA 51 :EVIL T0506 44 :TLDP 1m4tA 56 :QVLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29459 # 1cnv.39.77 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)A43 (1cnv)A82 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1cnv)G84 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1cnv)G85 because S (epsilon) conformation "forbidden" or filtered. T0506 39 :TAAL 1cnv 78 :KVFL T0506 44 :T 1cnv 83 :L T0506 47 :P 1cnv 86 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=29462 # 8abp.39.59 read from T0506.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A43 (8abp)C64 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (8abp)D67 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TAAL 8abp 60 :GFVI T0506 44 :TL 8abp 65 :TP T0506 47 :P 8abp 68 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=29465 # 1chd.39.37 read from T0506.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0506)A43 (1chd)T188 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1chd)M191 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :TAAL 1chd 184 :AVII T0506 44 :TL 1chd 189 :QH T0506 47 :P 1chd 192 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=29468 # 1mvlA.39.20 read from T0506.t04.many.frag # found chain 1mvlA in template set Warning: unaligning (T0506)P47 (1mvlA)S29 because E (beta_S) conformation "forbidden" or filtered. T0506 39 :TAALATLD 1mvlA 21 :RVLLAASG Number of specific fragments extracted= 1 number of extra gaps= 1 total=29469 # 1jqnA.39.130 read from T0506.t04.many.frag # found chain 1jqnA in template set T0506 39 :TAALATLDP 1jqnA 131 :LELVLTAHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29470 # 1vliA.39.114 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)A43 (1vliA)S107 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1vliA)D111 because Y (epsilon') conformation "forbidden" or filtered. T0506 39 :TAAL 1vliA 103 :VIFL T0506 44 :TLD 1vliA 108 :TVC Number of specific fragments extracted= 2 number of extra gaps= 2 total=29472 # 1uz5A.39.248 read from T0506.t04.many.frag # found chain 1uz5A in template set Warning: unaligning (T0506)A41 (1uz5A)V251 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uz5A)D262 T0506 39 :TA 1uz5A 249 :VV T0506 42 :LATL 1uz5A 252 :ISGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29474 2aneA expands to /projects/compbio/data/pdb/2ane.pdb.gz 2aneA:# 2aneA.39.55 read from T0506.t04.many.frag # adding 2aneA to template set # found chain 2aneA in template set T0506 39 :TAALATLDP 2aneA 49 :KIMLVAQKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29475 # 1kwgA.39.65 read from T0506.t04.many.frag # found chain 1kwgA in training set Warning: unaligning (T0506)A40 (1kwgA)V67 because P (beta_P) conformation "forbidden" or filtered. T0506 39 :T 1kwgA 66 :K T0506 41 :ALATLDP 1kwgA 68 :VLGTPTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29477 # 1qddA.40.75 read from T0506.t04.many.frag # found chain 1qddA in training set T0506 40 :AALATLDPV 1qddA 76 :VWIGLHDPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29478 # 1f9vA.40.86 read from T0506.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0506)A43 (1f9vA)A472 because P (beta_P) conformation "forbidden" or filtered. T0506 40 :AAL 1f9vA 469 :CIF T0506 44 :TLDPV 1f9vA 473 :YGQTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29480 # 1a5t.40.140 read from T0506.t04.many.frag # found chain 1a5t in template set Warning: unaligning (T0506)A41 (1a5t)F142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1a5t)E147 because D (zeta) conformation "forbidden" or filtered. T0506 40 :A 1a5t 141 :F T0506 42 :LATL 1a5t 143 :LATR T0506 47 :PV 1a5t 148 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=29483 # 1vpqA.40.121 read from T0506.t04.many.frag # found chain 1vpqA in template set Warning: unaligning (T0506)A40 (1vpqA)M110 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :ALATLDPV 1vpqA 111 :TLAQFPFS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29484 # 1tf5A.40.434 read from T0506.t04.many.frag # found chain 1tf5A in template set Warning: unaligning (T0506)A41 (1tf5A)L433 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :A 1tf5A 432 :V T0506 42 :LATLDPV 1tf5A 434 :VGTVAVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29486 1oxwA expands to /projects/compbio/data/pdb/1oxw.pdb.gz 1oxwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1oxwA.40.136 read from T0506.t04.many.frag # adding 1oxwA to template set # found chain 1oxwA in template set Warning: unaligning (T0506)A41 (1oxwA)V151 because D (zeta) conformation "forbidden" or filtered. T0506 40 :A 1oxwA 150 :V T0506 42 :LATLDPV 1oxwA 152 :ISSFDIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29488 # 1o97D.40.35 read from T0506.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0506)D46 (1o97D)G42 because Y (epsilon') conformation "forbidden" or filtered. T0506 40 :AALATL 1o97D 36 :VVVAVI T0506 47 :PV 1o97D 43 :SQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29490 # 1hd2A.40.34 read from T0506.t04.many.frag # found chain 1hd2A in training set Warning: unaligning (T0506)A41 (1hd2A)L36 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1hd2A)F43 because T (delta_L) conformation "forbidden" or filtered. T0506 40 :A 1hd2A 35 :V T0506 42 :LATLDP 1hd2A 37 :FGVPGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29492 # 1q74A.40.130 read from T0506.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)V48 (1q74A)N139 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLDP 1q74A 131 :HVVVTYDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=29493 # 1jl0A.40.156 read from T0506.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0506)P47 (1jl0A)F164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jl0A)V169 T0506 40 :AALATLD 1jl0A 157 :WYLYTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29494 # 1jalA.40.202 read from T0506.t04.many.frag # found chain 1jalA in template set Warning: unaligning (T0506)V48 (1jalA)D211 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLDP 1jalA 203 :MYIANVNE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29495 # 1khbA.40.268 read from T0506.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)A40 (1khbA)L266 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (1khbA)G269 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1khbA)N272 because P (beta_P) conformation "forbidden" or filtered. T0506 41 :AL 1khbA 267 :VL T0506 44 :TL 1khbA 270 :IT T0506 47 :PV 1khbA 273 :PE Number of specific fragments extracted= 3 number of extra gaps= 3 total=29498 # 1xhnA.40.32 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P47 (1xhnA)T40 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLD 1xhnA 33 :GALATIS T0506 48 :V 1xhnA 41 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29500 # 2fdiA.40.106 read from T0506.t04.many.frag # found chain 2fdiA in template set T0506 40 :AALATLDPV 2fdiA 117 :CLINRYAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29501 # 1ye8A.40.131 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 40 :AALATLDPV 1ye8A 132 :NVVATIPIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29502 2a2lA expands to /projects/compbio/data/pdb/2a2l.pdb.gz 2a2lA:# 2a2lA.40.34 read from T0506.t04.many.frag # adding 2a2lA to template set # found chain 2a2lA in template set Warning: unaligning (T0506)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2a2lA)V37 Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2lA)V37 T0506 42 :LATLDPV 2a2lA 38 :FSVVDRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=29503 # 1chd.40.38 read from T0506.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0506)D46 (1chd)M191 because Y (epsilon') conformation "forbidden" or filtered. T0506 40 :AALATL 1chd 185 :VIITQH T0506 47 :PV 1chd 192 :PP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29505 # 1qv9A.40.67 read from T0506.t04.many.frag # found chain 1qv9A in training set Warning: unaligning (T0506)D46 (1qv9A)N74 because L (left) conformation "forbidden" or filtered. T0506 40 :AALATL 1qv9A 68 :IVYGGP T0506 47 :PV 1qv9A 75 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29507 # 2fqxA.40.64 read from T0506.t04.many.frag # found chain 2fqxA in template set Warning: unaligning (T0506)L45 (2fqxA)G85 because S (epsilon) conformation "forbidden" or filtered. T0506 40 :AALAT 2fqxA 80 :LVVAC T0506 46 :DPV 2fqxA 86 :SFL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29509 # 1mvlA.40.21 read from T0506.t04.many.frag # found chain 1mvlA in template set Warning: unaligning (T0506)A40 (1mvlA)V22 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1mvlA)S29 because E (beta_S) conformation "forbidden" or filtered. T0506 41 :ALATLD 1mvlA 23 :LLAASG T0506 48 :V 1mvlA 30 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=29511 # 1ccwA.40.57 read from T0506.t04.many.frag # found chain 1ccwA in training set Warning: unaligning (T0506)P47 (1ccwA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1ccwA)Q66 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLD 1ccwA 58 :ILVSSLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=29512 # 8abp.40.60 read from T0506.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A40 (8abp)F61 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A43 (8abp)C64 because D (zeta) conformation "forbidden" or filtered. T0506 41 :AL 8abp 62 :VI T0506 44 :TLDPV 8abp 65 :TPDPK Number of specific fragments extracted= 2 number of extra gaps= 2 total=29514 # 1ty9A.40.58 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A40 (1ty9A)L59 because P (beta_P) conformation "forbidden" or filtered. T0506 41 :ALATLDPV 1ty9A 60 :ALATADSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=29515 # 1vl7A.40.32 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)V48 (1vl7A)Q29 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLDP 1vl7A 21 :AIISTISE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29516 # 1vkkA.40.42 read from T0506.t04.many.frag # found chain 1vkkA in training set T0506 40 :AALATLDPV 1vkkA 31 :AIIMKVDKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29517 # 1y08A.40.232 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)T44 (1y08A)H253 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1y08A)R259 T0506 40 :AALA 1y08A 249 :LGLS T0506 45 :L 1y08A 254 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29519 # 1m4tA.40.51 read from T0506.t04.many.frag # found chain 1m4tA in template set T0506 40 :AALATLDPV 1m4tA 52 :VILGQVLPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29520 # 2asfA.40.23 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A43 (2asfA)T27 because E (beta_S) conformation "forbidden" or filtered. T0506 40 :AAL 2asfA 24 :AML T0506 44 :TLDPV 2asfA 28 :TLRAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29522 # 1uv4A.40.24 read from T0506.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)V48 (1uv4A)E33 because G (3-10) conformation "forbidden" or filtered. T0506 40 :AALATLDP 1uv4A 25 :YALGTGLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=29523 1bouB expands to /projects/compbio/data/pdb/1bou.pdb.gz 1bouB:# 1bouB.40.53 read from T0506.t04.many.frag # adding 1bouB to template set # found chain 1bouB in template set T0506 40 :AALATLDPV 1bouB 54 :VILVYNDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29524 # 1qddA.41.76 read from T0506.t04.many.frag # found chain 1qddA in training set Warning: unaligning (T0506)A43 (1qddA)G79 because G (3-10) conformation "forbidden" or filtered. T0506 41 :AL 1qddA 77 :WI T0506 44 :TLDPVS 1qddA 80 :LHDPKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29526 # 1khbA.41.269 read from T0506.t04.many.frag # found chain 1khbA in template set T0506 41 :ALATLDPVS 1khbA 267 :VLGITNPEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29527 # 2a2lA.41.35 read from T0506.t04.many.frag # found chain 2a2lA in template set Warning: unaligning (T0506)A41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2a2lA)V37 Warning: unaligning (T0506)A43 (2a2lA)S39 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :L 2a2lA 38 :F T0506 44 :TLDPVS 2a2lA 40 :VVDRGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29529 # 1f9vA.41.87 read from T0506.t04.many.frag # found chain 1f9vA in training set Warning: unaligning (T0506)L45 (1f9vA)G474 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1f9vA)G477 because T (delta_L) conformation "forbidden" or filtered. T0506 41 :ALAT 1f9vA 470 :IFAY T0506 46 :DP 1f9vA 475 :QT T0506 49 :S 1f9vA 478 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=29532 # 1a5t.41.141 read from T0506.t04.many.frag # found chain 1a5t in template set Warning: unaligning (T0506)S49 (1a5t)R150 because G (3-10) conformation "forbidden" or filtered. T0506 41 :ALATLDPV 1a5t 142 :FLATREPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29533 # 1q74A.41.131 read from T0506.t04.many.frag # found chain 1q74A in training set Warning: unaligning (T0506)S49 (1q74A)G140 because L (left) conformation "forbidden" or filtered. T0506 41 :ALATLDPV 1q74A 132 :VVVTYDPN Number of specific fragments extracted= 1 number of extra gaps= 1 total=29534 # 1o97D.41.36 read from T0506.t04.many.frag # found chain 1o97D in training set T0506 41 :ALATLDPVS 1o97D 37 :VVAVIGSQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29535 # 1oxwA.41.137 read from T0506.t04.many.frag # found chain 1oxwA in template set Warning: unaligning (T0506)T44 (1oxwA)S154 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :ALA 1oxwA 151 :VIS T0506 45 :LDPVS 1oxwA 155 :FDIKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29537 # 1k3iA.41.219 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A43 (1k3iA)S205 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :AL 1k3iA 203 :LT T0506 44 :TLDPVS 1k3iA 206 :SWDPST Number of specific fragments extracted= 2 number of extra gaps= 1 total=29539 1qmeA expands to /projects/compbio/data/pdb/1qme.pdb.gz 1qmeA:# 1qmeA.41.241 read from T0506.t04.many.frag # adding 1qmeA to template set # found chain 1qmeA in template set T0506 41 :ALATLDPVS 1qmeA 290 :TATLVSAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29540 # 2fdiA.41.107 read from T0506.t04.many.frag # found chain 2fdiA in template set T0506 41 :ALATLDPVS 2fdiA 118 :LINRYAPGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29541 # 1rx0A.41.134 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)A43 (1rx0A)C137 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1rx0A)E140 because E (beta_S) conformation "forbidden" or filtered. T0506 41 :AL 1rx0A 135 :SY T0506 44 :TL 1rx0A 138 :LT T0506 47 :PVS 1rx0A 141 :PGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29544 # 1tf5A.41.435 read from T0506.t04.many.frag # found chain 1tf5A in template set T0506 41 :ALATLDPVS 1tf5A 433 :LVGTVAVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=29545 # 1uv4A.41.25 read from T0506.t04.many.frag # found chain 1uv4A in training set Warning: unaligning (T0506)A43 (1uv4A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :AL 1uv4A 26 :AL T0506 44 :TLDPVS 1uv4A 29 :TGLTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29547 # 1ylnA.41.42 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)D46 (1ylnA)T48 because P (beta_P) conformation "forbidden" or filtered. T0506 41 :ALATL 1ylnA 43 :TLSIT T0506 47 :PVS 1ylnA 49 :PVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29549 # 8abp.41.61 read from T0506.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0506)D46 (8abp)D67 because E (beta_S) conformation "forbidden" or filtered. T0506 41 :ALATL 8abp 62 :VICTP T0506 47 :PVS 8abp 68 :PKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29551 # 1vkkA.41.43 read from T0506.t04.many.frag # found chain 1vkkA in training set T0506 41 :ALATLDPVS 1vkkA 32 :IIMKVDKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29552 # 1pmmA.41.364 read from T0506.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0506)L45 (1pmmA)G369 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1pmmA)R370 because P (beta_P) conformation "forbidden" or filtered. T0506 41 :ALAT 1pmmA 365 :FICT T0506 47 :PVS 1pmmA 371 :PDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29554 # 1nlnA.41.41 read from T0506.t04.many.frag # found chain 1nlnA in training set T0506 41 :ALATLDPVS 1nlnA 42 :IVNTAGRET Number of specific fragments extracted= 1 number of extra gaps= 0 total=29555 1omzA expands to /projects/compbio/data/pdb/1omz.pdb.gz 1omzA:# 1omzA.41.59 read from T0506.t04.many.frag # adding 1omzA to template set # found chain 1omzA in template set Warning: unaligning (T0506)V48 (1omzA)G104 because L (left) conformation "forbidden" or filtered. T0506 41 :ALATLDP 1omzA 97 :IVVWNNV T0506 49 :S 1omzA 105 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29557 # 1jl0A.41.157 read from T0506.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0506)P47 (1jl0A)F164 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jl0A)V169 T0506 41 :ALATLD 1jl0A 158 :YLYTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29558 # 1cnv.41.79 read from T0506.t04.many.frag # found chain 1cnv in training set Warning: unaligning (T0506)A41 (1cnv)F80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1cnv)G84 because S (epsilon) conformation "forbidden" or filtered. T0506 42 :LAT 1cnv 81 :LAL T0506 46 :DPVS 1cnv 85 :GPKG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29560 # 1vpqA.41.122 read from T0506.t04.many.frag # found chain 1vpqA in template set T0506 41 :ALATLDPVS 1vpqA 111 :TLAQFPFSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29561 # 2bu3A.41.177 read from T0506.t04.many.frag # found chain 2bu3A in template set Warning: unaligning (T0506)L45 (2bu3A)Y171 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :ALAT 2bu3A 167 :VIVN T0506 46 :DPVS 2bu3A 172 :LRKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29563 # 1cvrA.41.72 read from T0506.t04.many.frag # found chain 1cvrA in template set Warning: unaligning (T0506)L45 (1cvrA)G77 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :ALAT 1cvrA 73 :VLLV T0506 46 :DPVS 1cvrA 78 :DHKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29565 # 1chd.41.39 read from T0506.t04.many.frag # found chain 1chd in training set Warning: unaligning (T0506)D46 (1chd)M191 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :ALATL 1chd 186 :IITQH T0506 47 :PVS 1chd 192 :PPG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29567 # 1lv7A.41.47 read from T0506.t04.many.frag # found chain 1lv7A in training set Warning: unaligning (T0506)L45 (1lv7A)G195 because Y (epsilon') conformation "forbidden" or filtered. T0506 41 :ALAT 1lv7A 191 :VLMV T0506 46 :DPVS 1lv7A 196 :PPGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29569 # 1iow.41.58 read from T0506.t04.many.frag # found chain 1iow in template set T0506 41 :ALATLDPVS 1iow 59 :FIALHGRGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29570 # 1xgkA.41.77 read from T0506.t04.many.frag # found chain 1xgkA in training set Warning: unaligning (T0506)A43 (1xgkA)N80 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1xgkA)G86 because S (epsilon) conformation "forbidden" or filtered. T0506 41 :AL 1xgkA 78 :FI T0506 44 :TLDPV 1xgkA 81 :TTSQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29572 # 1xhnA.41.33 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D46 (1xhnA)S39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1xhnA)T40 because G (3-10) conformation "forbidden" or filtered. T0506 41 :ALATL 1xhnA 34 :ALATI T0506 48 :VS 1xhnA 41 :LE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29574 # 1qddA.42.77 read from T0506.t04.many.frag # found chain 1qddA in training set Warning: unaligning (T0506)S49 (1qddA)K85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1qddA)N86 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATLDPV 1qddA 78 :IGLHDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29575 # 2a2lA.42.36 read from T0506.t04.many.frag # found chain 2a2lA in template set Warning: unaligning (T0506)G50 (2a2lA)N46 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :LATLDPVS 2a2lA 38 :FSVVDRGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=29576 # 1q74A.42.132 read from T0506.t04.many.frag # found chain 1q74A in training set T0506 42 :LATLDPVSG 1q74A 133 :VVTYDPNGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29577 # 1qmeA.42.242 read from T0506.t04.many.frag # found chain 1qmeA in template set T0506 42 :LATLDPVSG 1qmeA 291 :ATLVSAKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29578 # 1k3iA.42.220 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A43 (1k3iA)S205 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :L 1k3iA 204 :T T0506 44 :TLDPVSG 1k3iA 206 :SWDPSTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29580 1dq3A expands to /projects/compbio/data/pdb/1dq3.pdb.gz 1dq3A:# 1dq3A.42.52 read from T0506.t04.many.frag # adding 1dq3A to template set # found chain 1dq3A in template set Warning: unaligning (T0506)A43 (1dq3A)K54 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :L 1dq3A 53 :V T0506 44 :TLDPVSG 1dq3A 55 :SFDPESK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29582 # 1khbA.42.270 read from T0506.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)A43 (1khbA)G269 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1khbA)E276 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :L 1khbA 268 :L T0506 44 :TLDPVS 1khbA 270 :ITNPEG Number of specific fragments extracted= 2 number of extra gaps= 2 total=29584 # 1pmmA.42.365 read from T0506.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0506)A43 (1pmmA)C367 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T44 (1pmmA)T368 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L45 (1pmmA)G369 because L (left) conformation "forbidden" or filtered. T0506 42 :L 1pmmA 366 :I T0506 46 :DPVSG 1pmmA 370 :RPDEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29586 # 1w79A.42.24 read from T0506.t04.many.frag # found chain 1w79A in template set T0506 42 :LATLDPVSG 1w79A 25 :VVVVDTATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29587 # 1oxwA.42.138 read from T0506.t04.many.frag # found chain 1oxwA in template set Warning: unaligning (T0506)A43 (1oxwA)S153 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :L 1oxwA 152 :I T0506 44 :TLDPVSG 1oxwA 154 :SFDIKTN Number of specific fragments extracted= 2 number of extra gaps= 1 total=29589 # 1h7sA.42.121 read from T0506.t04.many.frag # found chain 1h7sA in template set T0506 42 :LATLDPVSG 1h7sA 122 :ISTCHASAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29590 # 1k8kC.42.121 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P47 (1k8kC)Q127 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATLD 1k8kC 122 :ICYFE T0506 48 :VSG 1k8kC 128 :END Number of specific fragments extracted= 2 number of extra gaps= 1 total=29592 # 1nlnA.42.42 read from T0506.t04.many.frag # found chain 1nlnA in training set Warning: unaligning (T0506)D46 (1nlnA)G47 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :LATL 1nlnA 43 :VNTA T0506 47 :PVSG 1nlnA 48 :RETG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29594 # 1w5qA.42.84 read from T0506.t04.many.frag # found chain 1w5qA in template set Warning: unaligning (T0506)A43 (1w5qA)F86 because D (zeta) conformation "forbidden" or filtered. T0506 42 :L 1w5qA 85 :L T0506 44 :TLDPVSG 1w5qA 87 :PVTPVEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29596 # 1rx0A.42.135 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)D46 (1rx0A)E140 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATL 1rx0A 136 :YCLT T0506 47 :PVSG 1rx0A 141 :PGSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29598 2c5uA expands to /projects/compbio/data/pdb/2c5u.pdb.gz 2c5uA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2c5uA.42.158 read from T0506.t04.many.frag # adding 2c5uA to template set # found chain 2c5uA in template set Warning: unaligning (T0506)D46 (2c5uA)A162 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (2c5uA)T164 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATL 2c5uA 158 :FEFV T0506 47 :P 2c5uA 163 :P T0506 49 :SG 2c5uA 165 :NR Number of specific fragments extracted= 3 number of extra gaps= 2 total=29601 # 2bw4A.42.82 read from T0506.t04.many.frag # found chain 2bw4A in template set T0506 42 :LATLDPVSG 2bw4A 83 :LRLINPDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29602 # 1uh4A.42.47 read from T0506.t04.many.frag # found chain 1uh4A in template set T0506 42 :LATLDPVSG 1uh4A 48 :IKYWDTADN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29603 # 1ylnA.42.43 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)G50 (1ylnA)T52 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :LATLDPVS 1ylnA 44 :LSITTPVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=29604 # 1omzA.42.60 read from T0506.t04.many.frag # found chain 1omzA in template set Warning: unaligning (T0506)V48 (1omzA)G104 because L (left) conformation "forbidden" or filtered. T0506 42 :LATLDP 1omzA 98 :VVWNNV T0506 49 :SG 1omzA 105 :EK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29606 # 1o97D.42.37 read from T0506.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0506)D46 (1o97D)G42 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :LATL 1o97D 38 :VAVI T0506 47 :PVSG 1o97D 43 :SQAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=29608 1zd7A expands to /projects/compbio/data/pdb/1zd7.pdb.gz 1zd7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zd7A.42.29 read from T0506.t04.many.frag # adding 1zd7A to template set # found chain 1zd7A in template set Warning: unaligning (T0506)S49 (1zd7A)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1zd7A)R38 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :LATLDPV 1zd7A 30 :VYSVDPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=29609 # 1a5t.42.142 read from T0506.t04.many.frag # found chain 1a5t in template set Warning: unaligning (T0506)S49 (1a5t)R150 because G (3-10) conformation "forbidden" or filtered. T0506 42 :LATLDPV 1a5t 143 :LATREPE T0506 50 :G 1a5t 151 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=29611 # 1cvrA.42.73 read from T0506.t04.many.frag # found chain 1cvrA in template set Warning: unaligning (T0506)G50 (1cvrA)I82 because D (zeta) conformation "forbidden" or filtered. T0506 42 :LATLDPVS 1cvrA 74 :LLVGDHKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=29612 # 1ugiA.42.56 read from T0506.t04.many.frag # found chain 1ugiA in training set Warning: unaligning (T0506)V48 (1ugiA)P63 because C (cis) conformation "forbidden" or filtered. T0506 42 :LATLDP 1ugiA 57 :LLTSDA T0506 49 :SG 1ugiA 64 :EY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29614 # 2fdiA.42.108 read from T0506.t04.many.frag # found chain 2fdiA in template set Warning: unaligning (T0506)V48 (2fdiA)G125 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2fdiA)K127 because Y (epsilon') conformation "forbidden" or filtered. T0506 42 :LATLDP 2fdiA 119 :INRYAP T0506 49 :S 2fdiA 126 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=29616 # 1vkkA.42.44 read from T0506.t04.many.frag # found chain 1vkkA in training set T0506 42 :LATLDPVSG 1vkkA 33 :IMKVDKDRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29617 # 1zdyA.42.49 read from T0506.t04.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)L45 (1zdyA)A53 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1zdyA)S54 because P (beta_P) conformation "forbidden" or filtered. T0506 42 :LAT 1zdyA 50 :FSM T0506 47 :PVSG 1zdyA 55 :GRHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29619 # 2aeuA.42.144 read from T0506.t04.many.frag # found chain 2aeuA in template set Warning: unaligning (T0506)P47 (2aeuA)T150 because E (beta_S) conformation "forbidden" or filtered. T0506 42 :LATLD 2aeuA 145 :IITGS T0506 48 :VSG 2aeuA 151 :MDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29621 # 1rljA.42.48 read from T0506.t04.many.frag # found chain 1rljA in template set Warning: unaligning (T0506)L45 (1rljA)Y43 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1rljA)T45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1rljA)F47 because L (left) conformation "forbidden" or filtered. T0506 42 :LAT 1rljA 40 :LVT T0506 46 :D 1rljA 44 :T T0506 48 :V 1rljA 46 :N T0506 50 :G 1rljA 48 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=29625 # 1dq3A.43.53 read from T0506.t04.many.frag # found chain 1dq3A in template set T0506 43 :ATLDPVSGY 1dq3A 54 :KSFDPESKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29626 # 1k3iA.43.221 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)S49 (1k3iA)T211 because G (3-10) conformation "forbidden" or filtered. T0506 43 :ATLDPV 1k3iA 205 :SSWDPS T0506 50 :GY 1k3iA 212 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29628 # 2a2lA.43.37 read from T0506.t04.many.frag # found chain 2a2lA in template set Warning: unaligning (T0506)A43 (2a2lA)S39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (2a2lA)N46 because P (beta_P) conformation "forbidden" or filtered. T0506 44 :TLDPVS 2a2lA 40 :VVDRGG T0506 51 :Y 2a2lA 47 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=29630 # 1qddA.43.78 read from T0506.t04.many.frag # found chain 1qddA in training set Warning: unaligning (T0506)L45 (1qddA)H81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1qddA)K84 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1qddA)K85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1qddA)N86 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1qddA)R87 because L (left) conformation "forbidden" or filtered. T0506 43 :AT 1qddA 79 :GL T0506 46 :DP 1qddA 82 :DP Number of specific fragments extracted= 2 number of extra gaps= 2 total=29632 # 1uh4A.43.48 read from T0506.t04.many.frag # found chain 1uh4A in template set T0506 43 :ATLDPVSGY 1uh4A 49 :KYWDTADNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29633 # 1qmeA.43.243 read from T0506.t04.many.frag # found chain 1qmeA in template set T0506 43 :ATLDPVSGY 1qmeA 292 :TLVSAKTGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29634 # 1w79A.43.25 read from T0506.t04.many.frag # found chain 1w79A in template set T0506 43 :ATLDPVSGY 1w79A 26 :VVVDTATGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29635 2a13A expands to /projects/compbio/data/pdb/2a13.pdb.gz 2a13A:Skipped atom 398, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 400, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 402, because occupancy 0.350 <= existing 0.650 in 2a13A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 496, because occupancy 0.350 <= existing 0.650 in 2a13A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 498, because occupancy 0.350 <= existing 0.650 in 2a13A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 500, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 663, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 665, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 667, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 937, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 939, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 1029, because occupancy 0.350 <= existing 0.650 in 2a13A Skipped atom 1031, because occupancy 0.350 <= existing 0.650 in 2a13A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1074, because occupancy 0.350 <= existing 0.650 in 2a13A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1076, because occupancy 0.350 <= existing 0.650 in 2a13A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1078, because occupancy 0.350 <= existing 0.650 in 2a13A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1080, because occupancy 0.350 <= existing 0.650 in 2a13A # 2a13A.43.64 read from T0506.t04.many.frag # adding 2a13A to template set # found chain 2a13A in template set T0506 43 :ATLDPVSGY 2a13A 65 :KTWKLESGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29636 # 1pmmA.43.366 read from T0506.t04.many.frag # found chain 1pmmA in template set T0506 43 :ATLDPVSGY 1pmmA 367 :CTGRPDEGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29637 # 2bw4A.43.83 read from T0506.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0506)G50 (2bw4A)N91 because P (beta_P) conformation "forbidden" or filtered. T0506 43 :ATLDPVS 2bw4A 84 :RLINPDT T0506 51 :Y 2bw4A 92 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=29639 # 1oxwA.43.139 read from T0506.t04.many.frag # found chain 1oxwA in template set Warning: unaligning (T0506)T44 (1oxwA)S154 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :A 1oxwA 153 :S T0506 45 :LDPVSGY 1oxwA 155 :FDIKTNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29641 # 1k8kC.43.122 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P47 (1k8kC)Q127 because G (3-10) conformation "forbidden" or filtered. T0506 43 :ATLD 1k8kC 123 :CYFE T0506 48 :VSGY 1k8kC 128 :ENDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29643 1t95A expands to /projects/compbio/data/pdb/1t95.pdb.gz 1t95A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1t95A.43.115 read from T0506.t04.many.frag # adding 1t95A to template set # found chain 1t95A in template set Warning: unaligning (T0506)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)D119 Warning: unaligning (T0506)D46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)D119 Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)T122 Warning: unaligning (T0506)S49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)T122 Warning: unaligning (T0506)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)N123 T0506 43 :AT 1t95A 116 :NT T0506 47 :P 1t95A 120 :P T0506 51 :Y 1t95A 124 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=29646 # 1ylnA.43.44 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)V48 (1ylnA)V50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1ylnA)G51 because T (delta_L) conformation "forbidden" or filtered. T0506 43 :ATLDP 1ylnA 45 :SITTP T0506 50 :GY 1ylnA 52 :TK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29648 # 1mqkH.43.36 read from T0506.t04.many.frag # found chain 1mqkH in template set Warning: unaligning (T0506)D46 (1mqkH)T40 because P (beta_P) conformation "forbidden" or filtered. T0506 43 :ATL 1mqkH 37 :VRQ T0506 47 :PVSGY 1mqkH 41 :PEKRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29650 # 1k5nA.43.10 read from T0506.t04.many.frag # found chain 1k5nA in training set T0506 43 :ATLDPVSGY 1k5nA 11 :SVSRPGRGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29651 # 1ugiA.43.57 read from T0506.t04.many.frag # found chain 1ugiA in training set Warning: unaligning (T0506)V48 (1ugiA)P63 because C (cis) conformation "forbidden" or filtered. T0506 43 :ATLDP 1ugiA 58 :LTSDA T0506 49 :SGY 1ugiA 64 :EYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29653 # 1w2wB.43.122 read from T0506.t04.many.frag # found chain 1w2wB in training set T0506 43 :ATLDPVSGY 1w2wB 343 :TVINPENGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29654 # 1m40A.43.21 read from T0506.t04.many.frag # found chain 1m40A in training set T0506 43 :ATLDPVSGY 1m40A 47 :IELDLNSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29655 1lktA expands to /projects/compbio/data/pdb/1lkt.pdb.gz 1lktA:# 1lktA.43.43 read from T0506.t04.many.frag # adding 1lktA to template set # found chain 1lktA in template set T0506 43 :ATLDPVSGY 1lktA 49 :VYIENEDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29656 # 1q74A.43.133 read from T0506.t04.many.frag # found chain 1q74A in training set T0506 43 :ATLDPVSGY 1q74A 134 :VTYDPNGGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29657 # 1d2sA.43.45 read from T0506.t04.many.frag # found chain 1d2sA in training set Warning: unaligning (T0506)G50 (1d2sA)D65 because D (zeta) conformation "forbidden" or filtered. T0506 43 :ATLDPVS 1d2sA 58 :GDTNPKD T0506 51 :Y 1d2sA 66 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=29659 # 1nlnA.43.43 read from T0506.t04.many.frag # found chain 1nlnA in training set T0506 43 :ATLDPVSGY 1nlnA 44 :NTAGRETGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29660 # 1ewnA.43.28 read from T0506.t04.many.frag # found chain 1ewnA in template set Warning: unaligning (T0506)G50 (1ewnA)T115 because P (beta_P) conformation "forbidden" or filtered. T0506 43 :ATLDPVS 1ewnA 108 :VRRLPNG T0506 51 :Y 1ewnA 116 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=29662 # 1k5dB.43.55 read from T0506.t04.many.frag # found chain 1k5dB in template set Warning: unaligning (T0506)P47 (1k5dB)S60 because Y (epsilon') conformation "forbidden" or filtered. T0506 43 :ATLD 1k5dB 56 :FRFA T0506 48 :VSGY 1k5dB 61 :ENDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29664 # 1w5qA.43.85 read from T0506.t04.many.frag # found chain 1w5qA in template set Warning: unaligning (T0506)A43 (1w5qA)F86 because D (zeta) conformation "forbidden" or filtered. T0506 44 :TLDPVSGY 1w5qA 87 :PVTPVEKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=29665 # 1khbA.43.271 read from T0506.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)G50 (1khbA)E276 because P (beta_P) conformation "forbidden" or filtered. T0506 43 :ATLDPVS 1khbA 269 :GITNPEG T0506 51 :Y 1khbA 277 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=29667 # 1v2xA.43.97 read from T0506.t04.many.frag # found chain 1v2xA in training set Warning: unaligning (T0506)V48 (1v2xA)E103 because G (3-10) conformation "forbidden" or filtered. T0506 43 :ATLDP 1v2xA 98 :ATALR T0506 49 :SGY 1v2xA 104 :DAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29669 1y0nA expands to /projects/compbio/data/pdb/1y0n.pdb.gz 1y0nA:# 1y0nA.43.53 read from T0506.t04.many.frag # adding 1y0nA to template set # found chain 1y0nA in template set Warning: unaligning (T0506)S49 (1y0nA)S58 because T (delta_L) conformation "forbidden" or filtered. T0506 43 :ATLDPV 1y0nA 52 :ILFDPE T0506 50 :GY 1y0nA 59 :QQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29671 # 1omzA.43.61 read from T0506.t04.many.frag # found chain 1omzA in template set Warning: unaligning (T0506)V48 (1omzA)G104 because L (left) conformation "forbidden" or filtered. T0506 43 :ATLDP 1omzA 99 :VWNNV T0506 49 :SGY 1omzA 105 :EKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29673 # 1k3iA.44.222 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)P52 (1k3iA)V214 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLDPVSGY 1k3iA 206 :SWDPSTGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29674 # 1rzhH.44.179 read from T0506.t04.many.frag # found chain 1rzhH in training set Warning: unaligning (T0506)P52 (1rzhH)T188 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLDPVSGY 1rzhH 180 :EVELKDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29675 # 1dq3A.44.54 read from T0506.t04.many.frag # found chain 1dq3A in template set T0506 44 :TLDPVSGYP 1dq3A 55 :SFDPESKRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29676 # 2a13A.44.65 read from T0506.t04.many.frag # found chain 2a13A in template set Warning: unaligning (T0506)L45 (2a13A)W67 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :T 2a13A 66 :T T0506 46 :DPVSGYP 2a13A 68 :KLESGAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29678 # 1b43A.44.37 read from T0506.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)S49 (1b43A)D42 because G (3-10) conformation "forbidden" or filtered. T0506 44 :TLDPV 1b43A 37 :TIRQK T0506 50 :GYP 1b43A 43 :GTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29680 # 1lktA.44.44 read from T0506.t04.many.frag # found chain 1lktA in template set Warning: unaligning (T0506)P52 (1lktA)H58 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLDPVSGY 1lktA 50 :YIENEDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29681 # 1uh4A.44.49 read from T0506.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)Y51 (1uh4A)A57 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :TLDPVSG 1uh4A 50 :YWDTADN T0506 52 :P 1uh4A 58 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=29683 # 1ewnA.44.29 read from T0506.t04.many.frag # found chain 1ewnA in template set T0506 44 :TLDPVSGYP 1ewnA 109 :RRLPNGTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29684 # 1zn6A.44.126 read from T0506.t04.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)D46 (1zn6A)T129 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TL 1zn6A 127 :RF T0506 47 :PVSGYP 1zn6A 130 :RADGAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29686 # 1w79A.44.26 read from T0506.t04.many.frag # found chain 1w79A in template set T0506 44 :TLDPVSGYP 1w79A 27 :VVDTATGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29687 # 1k5nA.44.11 read from T0506.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0506)V48 (1k5nA)G16 because T (delta_L) conformation "forbidden" or filtered. T0506 44 :TLDP 1k5nA 12 :VSRP T0506 49 :SGYP 1k5nA 17 :RGEP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29689 # 1y0nA.44.54 read from T0506.t04.many.frag # found chain 1y0nA in template set Warning: unaligning (T0506)S49 (1y0nA)S58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1y0nA)C61 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLDPV 1y0nA 53 :LFDPE T0506 50 :GY 1y0nA 59 :QQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=29691 # 2bw4A.44.84 read from T0506.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0506)G50 (2bw4A)N91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (2bw4A)L93 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLDPVS 2bw4A 85 :LINPDT T0506 51 :Y 2bw4A 92 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=29693 # 1pmmA.44.367 read from T0506.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0506)L45 (1pmmA)G369 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D46 (1pmmA)R370 because P (beta_P) conformation "forbidden" or filtered. T0506 44 :T 1pmmA 368 :T T0506 47 :PVSGYP 1pmmA 371 :PDEGIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29695 # 1r6xA.44.69 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)D46 (1r6xA)R73 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TL 1r6xA 71 :DS T0506 47 :PVSGYP 1r6xA 74 :LADGTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29697 # 1m40A.44.22 read from T0506.t04.many.frag # found chain 1m40A in training set T0506 44 :TLDPVSGYP 1m40A 48 :ELDLNSGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29698 # 2a2lA.44.38 read from T0506.t04.many.frag # found chain 2a2lA in template set Warning: unaligning (T0506)S49 (2a2lA)G45 because T (delta_L) conformation "forbidden" or filtered. T0506 44 :TLDPV 2a2lA 40 :VVDRG T0506 50 :GYP 2a2lA 46 :NTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29700 # 1k8kC.44.123 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P47 (1k8kC)Q127 because G (3-10) conformation "forbidden" or filtered. T0506 44 :TLD 1k8kC 124 :YFE T0506 48 :VSGYP 1k8kC 128 :ENDWW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29702 # 1t95A.44.116 read from T0506.t04.many.frag # found chain 1t95A in template set Warning: unaligning (T0506)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)D119 Warning: unaligning (T0506)D46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)D119 Warning: unaligning (T0506)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)T122 Warning: unaligning (T0506)S49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)T122 Warning: unaligning (T0506)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)N123 T0506 44 :T 1t95A 117 :T T0506 47 :P 1t95A 120 :P T0506 51 :YP 1t95A 124 :AP Number of specific fragments extracted= 3 number of extra gaps= 2 total=29705 # 1qddA.44.79 read from T0506.t04.many.frag # found chain 1qddA in training set Warning: unaligning (T0506)D46 (1qddA)D82 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1qddA)K85 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1qddA)R87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1qddA)A88 because D (zeta) conformation "forbidden" or filtered. T0506 44 :TL 1qddA 80 :LH T0506 47 :PV 1qddA 83 :PK T0506 50 :G 1qddA 86 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=29708 # 1w2wB.44.123 read from T0506.t04.many.frag # found chain 1w2wB in training set T0506 44 :TLDPVSGYP 1w2wB 344 :VINPENGSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29709 # 1ugiA.44.58 read from T0506.t04.many.frag # found chain 1ugiA in training set Warning: unaligning (T0506)V48 (1ugiA)P63 because C (cis) conformation "forbidden" or filtered. T0506 44 :TLDP 1ugiA 59 :TSDA T0506 49 :SGYP 1ugiA 64 :EYKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29711 1zhhB expands to /projects/compbio/data/pdb/1zhh.pdb.gz 1zhhB:# 1zhhB.44.137 read from T0506.t04.many.frag # adding 1zhhB to template set # found chain 1zhhB in template set T0506 44 :TLDPVSGYP 1zhhB 174 :ILDPSTGEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29712 # 1oxwA.44.140 read from T0506.t04.many.frag # found chain 1oxwA in template set T0506 44 :TLDPVSGYP 1oxwA 154 :SFDIKTNKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29713 1r77A expands to /projects/compbio/data/pdb/1r77.pdb.gz 1r77A:# 1r77A.44.71 read from T0506.t04.many.frag # adding 1r77A to template set # found chain 1r77A in template set T0506 44 :TLDPVSGYP 1r77A 331 :GYNTNSGKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29714 # 1qmeA.44.244 read from T0506.t04.many.frag # found chain 1qmeA in template set T0506 44 :TLDPVSGYP 1qmeA 293 :LVSAKTGEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29715 # 1k5dB.44.56 read from T0506.t04.many.frag # found chain 1k5dB in template set Warning: unaligning (T0506)D46 (1k5dB)A59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1k5dB)S60 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :TL 1k5dB 57 :RF T0506 48 :VSGYP 1k5dB 61 :ENDLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29717 1at0 expands to /projects/compbio/data/pdb/1at0.pdb.gz 1at0:Warning: there is no chain 1at0 will retry with 1at0A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1at0.44.27 read from T0506.t04.many.frag # adding 1at0 to template set # found chain 1at0 in template set Warning: unaligning (T0506)L45 (1at0)S286 because Y (epsilon') conformation "forbidden" or filtered. T0506 44 :T 1at0 285 :L T0506 46 :DPVSGYP 1at0 287 :MTANGQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29719 # 1ylnA.44.45 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)V48 (1ylnA)V50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1ylnA)G51 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1ylnA)T52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1ylnA)F54 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLDP 1ylnA 46 :ITTP T0506 51 :Y 1ylnA 53 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=29721 1qqp3 expands to /projects/compbio/data/pdb/1qqp.pdb.gz 1qqp3:# 1qqp3.44.53 read from T0506.t04.many.frag # adding 1qqp3 to template set # found chain 1qqp3 in template set Warning: unaligning (T0506)P47 (1qqp3)F57 because E (beta_S) conformation "forbidden" or filtered. T0506 44 :TLD 1qqp3 54 :FLR T0506 48 :VSGYP 1qqp3 58 :EGGVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29723 # 1rzhH.45.180 read from T0506.t04.many.frag # found chain 1rzhH in training set Warning: unaligning (T0506)P52 (1rzhH)T188 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPVSGY 1rzhH 181 :VELKDGS T0506 53 :Y 1rzhH 189 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=29725 # 1r6xA.45.70 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)L45 (1r6xA)S72 because L (left) conformation "forbidden" or filtered. T0506 46 :DPVSGYPY 1r6xA 73 :RLADGTLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=29726 # 1k3iA.45.223 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)P52 (1k3iA)V214 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPVSGY 1k3iA 207 :WDPSTGI T0506 53 :Y 1k3iA 215 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=29728 # 1b43A.45.38 read from T0506.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)D46 (1b43A)R39 because Y (epsilon') conformation "forbidden" or filtered. T0506 45 :L 1b43A 38 :I T0506 47 :PVSGYPY 1b43A 40 :QKDGTPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29730 # 1zn6A.45.127 read from T0506.t04.many.frag # found chain 1zn6A in template set T0506 45 :LDPVSGYPY 1zn6A 128 :FTRADGAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29731 # 2a13A.45.66 read from T0506.t04.many.frag # found chain 2a13A in template set Warning: unaligning (T0506)D46 (2a13A)K68 because P (beta_P) conformation "forbidden" or filtered. T0506 45 :L 2a13A 67 :W T0506 47 :PVSGYPY 2a13A 69 :LESGAPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29733 # 2asfA.45.27 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 45 :LDPVSGYPY 2asfA 28 :TLRADNSPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29734 # 1dq3A.45.55 read from T0506.t04.many.frag # found chain 1dq3A in template set T0506 45 :LDPVSGYPY 1dq3A 56 :FDPESKRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29735 # 1zhhB.45.138 read from T0506.t04.many.frag # found chain 1zhhB in template set T0506 45 :LDPVSGYPY 1zhhB 175 :LDPSTGEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29736 # 1y0nA.45.55 read from T0506.t04.many.frag # found chain 1y0nA in template set Warning: unaligning (T0506)S49 (1y0nA)S58 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1y0nA)C61 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPV 1y0nA 54 :FDPE T0506 50 :GY 1y0nA 59 :QQ T0506 53 :Y 1y0nA 62 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=29739 # 1lktA.45.45 read from T0506.t04.many.frag # found chain 1lktA in template set Warning: unaligning (T0506)P52 (1lktA)H58 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPVSGY 1lktA 51 :IENEDGS T0506 53 :Y 1lktA 59 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=29741 # 1k5nA.45.12 read from T0506.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0506)D46 (1k5nA)R14 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)V48 (1k5nA)G16 because T (delta_L) conformation "forbidden" or filtered. T0506 45 :L 1k5nA 13 :S T0506 47 :P 1k5nA 15 :P T0506 49 :SGYPY 1k5nA 17 :RGEPR Number of specific fragments extracted= 3 number of extra gaps= 2 total=29744 # 1ewnA.45.30 read from T0506.t04.many.frag # found chain 1ewnA in template set T0506 45 :LDPVSGYPY 1ewnA 110 :RLPNGTELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29745 # 1uh4A.45.50 read from T0506.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)S49 (1uh4A)D55 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1uh4A)A57 because Y (epsilon') conformation "forbidden" or filtered. T0506 45 :LDPV 1uh4A 51 :WDTA T0506 50 :G 1uh4A 56 :N T0506 52 :PY 1uh4A 58 :FH Number of specific fragments extracted= 3 number of extra gaps= 2 total=29748 2cxvA expands to /projects/compbio/data/pdb/2cxv.pdb.gz 2cxvA:# 2cxvA.45.17 read from T0506.t04.many.frag # adding 2cxvA to template set # found chain 2cxvA in template set Warning: unaligning (T0506)D46 (2cxvA)G19 because Y (epsilon') conformation "forbidden" or filtered. T0506 45 :L 2cxvA 18 :V T0506 47 :PVSGYPY 2cxvA 20 :EKNGSVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29750 # 1wlgA.45.13 read from T0506.t04.many.frag # found chain 1wlgA in training set Warning: unaligning (T0506)P52 (1wlgA)V91 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPVSGY 1wlgA 84 :LVDSNGS T0506 53 :Y 1wlgA 92 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=29752 # 1at0.45.28 read from T0506.t04.many.frag # found chain 1at0 in template set Warning: unaligning (T0506)L45 (1at0)S286 because Y (epsilon') conformation "forbidden" or filtered. T0506 46 :DPVSGYPY 1at0 287 :MTANGQAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29753 # 1pmmA.45.368 read from T0506.t04.many.frag # found chain 1pmmA in template set Warning: unaligning (T0506)D46 (1pmmA)R370 because P (beta_P) conformation "forbidden" or filtered. T0506 45 :L 1pmmA 369 :G T0506 47 :PVSGYPY 1pmmA 371 :PDEGIPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29755 # 1w2wB.45.124 read from T0506.t04.many.frag # found chain 1w2wB in training set Warning: unaligning (T0506)D46 (1w2wB)N346 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1w2wB)N349 because G (3-10) conformation "forbidden" or filtered. T0506 45 :L 1w2wB 345 :I T0506 47 :PV 1w2wB 347 :PE T0506 50 :GYPY 1w2wB 350 :GSLI Number of specific fragments extracted= 3 number of extra gaps= 2 total=29758 # 1vl7A.45.36 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 45 :LDPVSGYPY 1vl7A 25 :TISEQGIPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29759 # 1ty9A.45.62 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)L45 (1ty9A)T63 because Y (epsilon') conformation "forbidden" or filtered. T0506 46 :DPVSGYPY 1ty9A 64 :ADSQGRPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29760 # 2bw4A.45.85 read from T0506.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0506)G50 (2bw4A)N91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (2bw4A)L93 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPVS 2bw4A 86 :INPDT T0506 51 :Y 2bw4A 92 :T T0506 53 :Y 2bw4A 94 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=29763 # 1k8kC.45.124 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P47 (1k8kC)Q127 because G (3-10) conformation "forbidden" or filtered. T0506 45 :LD 1k8kC 125 :FE T0506 48 :VSGYPY 1k8kC 128 :ENDWWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29765 1wrvA expands to /projects/compbio/data/pdb/1wrv.pdb.gz 1wrvA:# 1wrvA.45.183 read from T0506.t04.many.frag # adding 1wrvA to template set # found chain 1wrvA in template set T0506 45 :LDPVSGYPY 1wrvA 184 :LLDEEGYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29766 # 1xniA.45.9 read from T0506.t04.many.frag # found chain 1xniA in template set Warning: unaligning (T0506)P47 (1xniA)S1496 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1xniA)N1498 because L (left) conformation "forbidden" or filtered. T0506 45 :LD 1xniA 1494 :KW T0506 48 :V 1xniA 1497 :S T0506 50 :GYPY 1xniA 1499 :GYFY Number of specific fragments extracted= 3 number of extra gaps= 2 total=29769 # 1i40A.45.31 read from T0506.t04.many.frag # found chain 1i40A in training set T0506 45 :LDPVSGYPY 1i40A 32 :IDKESGALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29770 # 1orc.45.42 read from T0506.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0506)P52 (1orc)V50 because E (beta_S) conformation "forbidden" or filtered. T0506 45 :LDPVSGY 1orc 43 :TINADGS T0506 53 :Y 1orc 51 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=29772 # 1lm8V.45.34 read from T0506.t04.many.frag # found chain 1lm8V in template set T0506 45 :LDPVSGYPY 1lm8V 88 :WLNFDGEPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=29773 # 1m40A.45.23 read from T0506.t04.many.frag # found chain 1m40A in training set T0506 45 :LDPVSGYPY 1m40A 49 :LDLNSGKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29774 # 1ugiA.45.59 read from T0506.t04.many.frag # found chain 1ugiA in training set Warning: unaligning (T0506)V48 (1ugiA)P63 because C (cis) conformation "forbidden" or filtered. T0506 45 :LDP 1ugiA 60 :SDA T0506 49 :SGYPY 1ugiA 64 :EYKPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=29776 # 1r6xA.46.71 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 46 :DPVSGYPYT 1r6xA 73 :RLADGTLWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29777 # 1rzhH.46.181 read from T0506.t04.many.frag # found chain 1rzhH in training set Warning: unaligning (T0506)D46 (1rzhH)E182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1rzhH)T188 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PVSGY 1rzhH 183 :LKDGS T0506 53 :YT 1rzhH 189 :RL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29779 # 1b43A.46.39 read from T0506.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)D46 (1b43A)R39 because Y (epsilon') conformation "forbidden" or filtered. T0506 47 :PVSGYPYT 1b43A 40 :QKDGTPLM Number of specific fragments extracted= 1 number of extra gaps= 1 total=29780 # 2asfA.46.28 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 46 :DPVSGYPYT 2asfA 29 :LRADNSPHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29781 # 1zn6A.46.128 read from T0506.t04.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)S49 (1zn6A)D132 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DPV 1zn6A 129 :TRA T0506 50 :GYPYT 1zn6A 133 :GAPLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29783 # 1uh4A.46.51 read from T0506.t04.many.frag # found chain 1uh4A in template set T0506 46 :DPVSGYPYT 1uh4A 52 :DTADNAFHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29784 # 1vl7A.46.37 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)S49 (1vl7A)Q29 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DPV 1vl7A 26 :ISE T0506 50 :GYPYT 1vl7A 30 :GIPNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29786 # 1orc.46.43 read from T0506.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0506)D46 (1orc)I44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1orc)D47 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1orc)V50 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PV 1orc 45 :NA T0506 50 :GY 1orc 48 :GS T0506 53 :YT 1orc 51 :YA Number of specific fragments extracted= 3 number of extra gaps= 3 total=29789 # 2nlrA.46.47 read from T0506.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2nlrA)S56 Warning: unaligning (T0506)T54 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2nlrA)S56 T0506 46 :DPVSGYP 2nlrA 48 :APTNGAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=29790 # 1lktA.46.46 read from T0506.t04.many.frag # found chain 1lktA in template set Warning: unaligning (T0506)P52 (1lktA)H58 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :DPVSGY 1lktA 52 :ENEDGS T0506 53 :YT 1lktA 59 :VQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=29792 # 1ty9A.46.63 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 46 :DPVSGYPYT 1ty9A 64 :ADSQGRPST Number of specific fragments extracted= 1 number of extra gaps= 0 total=29793 # 1k3iA.46.224 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)S49 (1k3iA)T211 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1k3iA)V214 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :DPV 1k3iA 208 :DPS T0506 50 :GY 1k3iA 212 :GI T0506 53 :YT 1k3iA 215 :SD Number of specific fragments extracted= 3 number of extra gaps= 2 total=29796 1up8A expands to /projects/compbio/data/pdb/1up8.pdb.gz 1up8A:# 1up8A.46.101 read from T0506.t04.many.frag # adding 1up8A to template set # found chain 1up8A in template set T0506 46 :DPVSGYPYT 1up8A 101 :DPETGLPIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29797 # 2a13A.46.67 read from T0506.t04.many.frag # found chain 2a13A in template set T0506 46 :DPVSGYPYT 2a13A 68 :KLESGAPMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29798 # 2cxvA.46.18 read from T0506.t04.many.frag # found chain 2cxvA in template set Warning: unaligning (T0506)D46 (2cxvA)G19 because Y (epsilon') conformation "forbidden" or filtered. T0506 47 :PVSGYPYT 2cxvA 20 :EKNGSVRW Number of specific fragments extracted= 1 number of extra gaps= 1 total=29799 # 1at0.46.29 read from T0506.t04.many.frag # found chain 1at0 in template set T0506 46 :DPVSGYPYT 1at0 287 :MTANGQAVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29800 # 1wrvA.46.184 read from T0506.t04.many.frag # found chain 1wrvA in template set T0506 46 :DPVSGYPYT 1wrvA 185 :LDEEGYVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29801 # 1k5nA.46.13 read from T0506.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0506)V48 (1k5nA)G16 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1k5nA)G18 because S (epsilon) conformation "forbidden" or filtered. T0506 46 :DP 1k5nA 14 :RP T0506 49 :S 1k5nA 17 :R T0506 51 :YPYT 1k5nA 19 :EPRF Number of specific fragments extracted= 3 number of extra gaps= 2 total=29804 # 1ewnA.46.31 read from T0506.t04.many.frag # found chain 1ewnA in template set Warning: unaligning (T0506)S49 (1ewnA)G114 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1ewnA)T115 because P (beta_P) conformation "forbidden" or filtered. T0506 46 :DPV 1ewnA 111 :LPN T0506 51 :YPYT 1ewnA 116 :ELRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29806 # 1xniA.46.10 read from T0506.t04.many.frag # found chain 1xniA in template set Warning: unaligning (T0506)P47 (1xniA)S1496 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1xniA)N1498 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1xniA)G1499 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :D 1xniA 1495 :W T0506 48 :V 1xniA 1497 :S T0506 51 :YPYT 1xniA 1500 :YFYS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29809 # 1wlgA.46.14 read from T0506.t04.many.frag # found chain 1wlgA in training set Warning: unaligning (T0506)P52 (1wlgA)V91 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :DPVSGY 1wlgA 85 :VDSNGS T0506 53 :YT 1wlgA 92 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=29811 # 1dq3A.46.56 read from T0506.t04.many.frag # found chain 1dq3A in template set Warning: unaligning (T0506)Y51 (1dq3A)R62 because Y (epsilon') conformation "forbidden" or filtered. T0506 46 :DPVSG 1dq3A 57 :DPESK T0506 52 :PYT 1dq3A 63 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=29813 # 1zhhB.46.139 read from T0506.t04.many.frag # found chain 1zhhB in template set Warning: unaligning (T0506)S49 (1zhhB)T179 because G (3-10) conformation "forbidden" or filtered. T0506 46 :DPV 1zhhB 176 :DPS T0506 50 :GYPYT 1zhhB 180 :GEVLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29815 # 1lm8V.46.35 read from T0506.t04.many.frag # found chain 1lm8V in template set T0506 46 :DPVSGYPYT 1lm8V 89 :LNFDGEPQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29816 # 1xhnA.46.41 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 46 :DPVSGYPYT 1xhnA 42 :EAVRGRPFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29817 # 1qqp3.46.55 read from T0506.t04.many.frag # found chain 1qqp3 in template set Warning: unaligning (T0506)D46 (1qqp3)R56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P47 (1qqp3)F57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1qqp3)G59 because T (delta_L) conformation "forbidden" or filtered. T0506 48 :V 1qqp3 58 :E T0506 50 :GYPYT 1qqp3 60 :GVPYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=29819 # 1y0nA.46.56 read from T0506.t04.many.frag # found chain 1y0nA in template set Warning: unaligning (T0506)P52 (1y0nA)C61 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :DPVSGY 1y0nA 55 :DPESQQ T0506 53 :YT 1y0nA 62 :QL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29821 1dzfA expands to /projects/compbio/data/pdb/1dzf.pdb.gz 1dzfA:# 1dzfA.46.46 read from T0506.t04.many.frag # adding 1dzfA to template set # found chain 1dzfA in template set T0506 46 :DPVSGYPYT 1dzfA 47 :CDSMGRPQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29822 # 1gvp.46.18 read from T0506.t04.many.frag # found chain 1gvp in training set T0506 46 :DPVSGYPYT 1gvp 19 :VSRQGKPYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29823 # 1m4zA.46.45 read from T0506.t04.many.frag # found chain 1m4zA in template set Warning: unaligning (T0506)P52 (1m4zA)K49 because E (beta_S) conformation "forbidden" or filtered. T0506 46 :DPVSGY 1m4zA 43 :RSSDGI T0506 53 :YT 1m4zA 50 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=29825 # 1r6xA.47.72 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 47 :PVSGYPYTT 1r6xA 74 :LADGTLWTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29826 # 2asfA.47.29 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 47 :PVSGYPYTT 2asfA 30 :RADNSPHVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29827 # 1vl7A.47.38 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 47 :PVSGYPYTT 1vl7A 27 :SEQGIPNGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29828 # 1ty9A.47.64 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)T55 (1ty9A)R73 because Y (epsilon') conformation "forbidden" or filtered. T0506 47 :PVSGYPYT 1ty9A 65 :DSQGRPST Number of specific fragments extracted= 1 number of extra gaps= 1 total=29829 # 1xhnA.47.42 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 47 :PVSGYPYTT 1xhnA 43 :AVRGRPFAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29830 # 1rzhH.47.182 read from T0506.t04.many.frag # found chain 1rzhH in training set Warning: unaligning (T0506)P52 (1rzhH)T188 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PVSGY 1rzhH 183 :LKDGS T0506 53 :YTT 1rzhH 189 :RLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29832 # 2nlrA.47.48 read from T0506.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2nlrA)S56 Warning: unaligning (T0506)T54 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2nlrA)S56 T0506 47 :PVSGYP 2nlrA 49 :PTNGAP T0506 55 :T 2nlrA 57 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=29834 # 1zn6A.47.129 read from T0506.t04.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)S49 (1zn6A)D132 because G (3-10) conformation "forbidden" or filtered. T0506 47 :PV 1zn6A 130 :RA T0506 50 :GYPYTT 1zn6A 133 :GAPLGI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29836 # 1gvp.47.19 read from T0506.t04.many.frag # found chain 1gvp in training set T0506 47 :PVSGYPYTT 1gvp 20 :SRQGKPYSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29837 1u9yA expands to /projects/compbio/data/pdb/1u9y.pdb.gz 1u9yA:# 1u9yA.47.31 read from T0506.t04.many.frag # adding 1u9yA to template set # found chain 1u9yA in template set T0506 47 :PVSGYPYTT 1u9yA 32 :FPDNEIYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29838 # 1orc.47.44 read from T0506.t04.many.frag # found chain 1orc in training set Warning: unaligning (T0506)P52 (1orc)V50 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PVSGY 1orc 45 :NADGS T0506 53 :YTT 1orc 51 :YAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=29840 # 1o6sB.47.32 read from T0506.t04.many.frag # found chain 1o6sB in training set Warning: unaligning (T0506)S49 (1o6sB)E31 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1o6sB)V34 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PV 1o6sB 29 :DK T0506 50 :GY 1o6sB 32 :GK T0506 53 :YTT 1o6sB 35 :FYS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29843 # 1uh4A.47.52 read from T0506.t04.many.frag # found chain 1uh4A in template set T0506 47 :PVSGYPYTT 1uh4A 53 :TADNAFHWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29844 # 1b43A.47.40 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 47 :PVSGYPYTT 1b43A 40 :QKDGTPLMD Number of specific fragments extracted= 1 number of extra gaps= 0 total=29845 # 1wj9A.47.138 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)P47 (1wj9A)E139 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1wj9A)R142 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1wj9A)G143 because S (epsilon) conformation "forbidden" or filtered. T0506 48 :VS 1wj9A 140 :GE T0506 52 :PYTT 1wj9A 144 :PWVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=29847 1svpA expands to /projects/compbio/data/pdb/1svp.pdb.gz 1svpA:# 1svpA.47.115 read from T0506.t04.many.frag # adding 1svpA to template set # found chain 1svpA in template set T0506 47 :PVSGYPYTT 1svpA 221 :DNSGRVVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29848 # 1lktA.47.47 read from T0506.t04.many.frag # found chain 1lktA in template set Warning: unaligning (T0506)P52 (1lktA)H58 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PVSGY 1lktA 53 :NEDGS T0506 53 :YTT 1lktA 59 :VQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29850 # 1up8A.47.102 read from T0506.t04.many.frag # found chain 1up8A in template set T0506 47 :PVSGYPYTT 1up8A 102 :PETGLPIWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29851 # 1xccA.47.119 read from T0506.t04.many.frag # found chain 1xccA in template set T0506 47 :PVSGYPYTT 1xccA 120 :DITGLPLTC Number of specific fragments extracted= 1 number of extra gaps= 0 total=29852 # 2bjfA.47.132 read from T0506.t04.many.frag # found chain 2bjfA in template set T0506 47 :PVSGYPYTT 2bjfA 133 :ISENIPNTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29853 # 1pg4A.47.265 read from T0506.t04.many.frag # found chain 1pg4A in training set Warning: unaligning (T0506)P47 (1pg4A)G266 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGYPYTT 1pg4A 267 :STGKPKGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29854 # 1ylnA.47.47 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)P52 (1ylnA)K53 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PVSGY 1ylnA 48 :TPVGT T0506 53 :YTT 1ylnA 54 :FVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29856 # 1ryoA.47.71 read from T0506.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0506)S49 (1ryoA)P74 because C (cis) conformation "forbidden" or filtered. T0506 47 :PV 1ryoA 72 :LA T0506 50 :GYPYTT 1ryoA 75 :NNLKPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29858 # 1k5nA.47.14 read from T0506.t04.many.frag # found chain 1k5nA in training set Warning: unaligning (T0506)V48 (1k5nA)G16 because T (delta_L) conformation "forbidden" or filtered. T0506 47 :P 1k5nA 15 :P T0506 49 :SGYPYTT 1k5nA 17 :RGEPRFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29860 1br9 expands to /projects/compbio/data/pdb/1br9.pdb.gz 1br9:Warning: there is no chain 1br9 will retry with 1br9A # 1br9.47.33 read from T0506.t04.many.frag # adding 1br9 to template set # found chain 1br9 in template set T0506 47 :PVSGYPYTT 1br9 34 :DIYGNPIKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29861 # 1wlgA.47.15 read from T0506.t04.many.frag # found chain 1wlgA in training set Warning: unaligning (T0506)P52 (1wlgA)V91 because E (beta_S) conformation "forbidden" or filtered. T0506 47 :PVSGY 1wlgA 86 :DSNGS T0506 53 :YTT 1wlgA 92 :FYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29863 # 2furA.47.39 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)P47 (2furA)I39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 48 :V 2furA 40 :D T0506 50 :GYPYTT 2furA 42 :GIPYAI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29865 # 1zhhB.47.140 read from T0506.t04.many.frag # found chain 1zhhB in template set T0506 47 :PVSGYPYTT 1zhhB 177 :PSTGEVLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=29866 # 1dzfA.47.47 read from T0506.t04.many.frag # found chain 1dzfA in template set T0506 47 :PVSGYPYTT 1dzfA 48 :DSMGRPQRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=29867 # 1pjxA.47.158 read from T0506.t04.many.frag # found chain 1pjxA in training set T0506 47 :PVSGYPYTT 1pjxA 159 :TTDGQMIQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29868 # 2asfA.48.30 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 48 :VSGYPYTTA 2asfA 31 :ADNSPHVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29869 # 1vl7A.48.39 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 48 :VSGYPYTTA 1vl7A 28 :EQGIPNGSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=29870 # 1ty9A.48.65 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 48 :VSGYPYTTA 1ty9A 66 :SQGRPSTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29871 # 1xhnA.48.43 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)V48 (1xhnA)V44 because G (3-10) conformation "forbidden" or filtered. T0506 49 :SGYPYTTA 1xhnA 45 :RGRPFADV Number of specific fragments extracted= 1 number of extra gaps= 1 total=29872 # 1gvp.48.20 read from T0506.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0506)A56 (1gvp)N29 because P (beta_P) conformation "forbidden" or filtered. T0506 48 :VSGYPYTT 1gvp 21 :RQGKPYSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29873 # 2furA.48.40 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)S49 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 48 :V 2furA 40 :D T0506 50 :GYPYTTA 2furA 42 :GIPYAIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29875 # 1ylnA.48.48 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)P52 (1ylnA)K53 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGY 1ylnA 49 :PVGT T0506 53 :YTTA 1ylnA 54 :FVCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=29877 # 1xccA.48.120 read from T0506.t04.many.frag # found chain 1xccA in template set T0506 48 :VSGYPYTTA 1xccA 121 :ITGLPLTCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=29878 # 1r6xA.48.73 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 48 :VSGYPYTTA 1r6xA 75 :ADGTLWTIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29879 # 1rzhH.48.183 read from T0506.t04.many.frag # found chain 1rzhH in training set Warning: unaligning (T0506)P52 (1rzhH)T188 because E (beta_S) conformation "forbidden" or filtered. T0506 48 :VSGY 1rzhH 184 :KDGS T0506 53 :YTTA 1rzhH 189 :RLLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29881 # 1zn6A.48.130 read from T0506.t04.many.frag # found chain 1zn6A in template set T0506 48 :VSGYPYTTA 1zn6A 131 :ADGAPLGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=29882 # 1svpA.48.116 read from T0506.t04.many.frag # found chain 1svpA in template set T0506 48 :VSGYPYTTA 1svpA 222 :NSGRVVAIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29883 # 2nlrA.48.49 read from T0506.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2nlrA)S56 Warning: unaligning (T0506)T54 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2nlrA)S56 T0506 48 :VSGYP 2nlrA 50 :TNGAP T0506 55 :TA 2nlrA 57 :YP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29885 # 1wj9A.48.139 read from T0506.t04.many.frag # found chain 1wj9A in template set T0506 48 :VSGYPYTTA 1wj9A 140 :GERGPWVQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29886 # 1tt8A.48.40 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)V48 (1tt8A)Q41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S49 (1tt8A)G42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G50 (1tt8A)K43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1tt8A)V45 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :Y 1tt8A 44 :T T0506 53 :YTTA 1tt8A 46 :SVTM Number of specific fragments extracted= 2 number of extra gaps= 2 total=29888 # 1u9yA.48.32 read from T0506.t04.many.frag # found chain 1u9yA in template set T0506 48 :VSGYPYTTA 1u9yA 33 :PDNEIYVRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29889 # 1xipA.48.31 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)V48 (1xipA)N31 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T54 (1xipA)A37 because Y (epsilon') conformation "forbidden" or filtered. T0506 49 :SGYPY 1xipA 32 :EKLPF T0506 55 :TA 1xipA 38 :SL Number of specific fragments extracted= 2 number of extra gaps= 2 total=29891 # 1pg4A.48.266 read from T0506.t04.many.frag # found chain 1pg4A in training set T0506 48 :VSGYPYTTA 1pg4A 267 :STGKPKGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29892 # 1ryp2.48.105 read from T0506.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)G50 (1ryp2)N100 because D (zeta) conformation "forbidden" or filtered. T0506 48 :VS 1ryp2 98 :KM T0506 51 :YPYTTA 1ryp2 101 :PLWNAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=29894 # 2bjfA.48.133 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)S49 (2bjfA)E135 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 T0506 48 :V 2bjfA 134 :S T0506 50 :GYPYTT 2bjfA 136 :NIPNTT Number of specific fragments extracted= 2 number of extra gaps= 2 total=29896 # 1ursA.48.128 read from T0506.t04.many.frag # found chain 1ursA in training set T0506 48 :VSGYPYTTA 1ursA 129 :VNGTMYSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=29897 1w4sA expands to /projects/compbio/data/pdb/1w4s.pdb.gz 1w4sA:# 1w4sA.48.39 read from T0506.t04.many.frag # adding 1w4sA to template set # found chain 1w4sA in template set Warning: unaligning (T0506)S49 because of BadResidue code BAD_PEPTIDE in next template residue (1w4sA)L971 Warning: unaligning (T0506)G50 because of BadResidue code BAD_PEPTIDE at template residue (1w4sA)L971 T0506 48 :V 1w4sA 969 :A T0506 51 :YPYTTA 1w4sA 972 :QPHIVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=29899 # 1ryoA.48.72 read from T0506.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0506)S49 (1ryoA)P74 because C (cis) conformation "forbidden" or filtered. T0506 48 :V 1ryoA 73 :A T0506 50 :GYPYTTA 1ryoA 75 :NNLKPVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=29901 # 1bdfA.48.47 read from T0506.t04.many.frag # found chain 1bdfA in template set T0506 48 :VSGYPYTTA 1bdfA 48 :LSSMPGCAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29902 # 1k5nA.48.15 read from T0506.t04.many.frag # found chain 1k5nA in training set T0506 48 :VSGYPYTTA 1k5nA 16 :GRGEPRFIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29903 # 1nd4A.48.71 read from T0506.t04.many.frag # found chain 1nd4A in template set T0506 48 :VSGYPYTTA 1nd4A 72 :TTGVPCAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29904 # 1jy1A.48.113 read from T0506.t04.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)S49 (1jy1A)F259 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y53 (1jy1A)H263 because G (3-10) conformation "forbidden" or filtered. T0506 48 :V 1jy1A 258 :A T0506 50 :GYP 1jy1A 260 :GTH T0506 54 :TTA 1jy1A 264 :TKM Number of specific fragments extracted= 3 number of extra gaps= 2 total=29907 # 1br9.48.34 read from T0506.t04.many.frag # found chain 1br9 in template set T0506 48 :VSGYPYTTA 1br9 35 :IYGNPIKRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29908 1sdeA expands to /projects/compbio/data/pdb/1sde.pdb.gz 1sdeA:Skipped atom 186, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 188, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 190, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 192, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 194, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 196, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 198, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 200, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 202, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 204, because occupancy 0.340 <= existing 0.660 in 1sdeA Skipped atom 381, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 383, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 385, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 387, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 389, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 391, because occupancy 0.280 <= existing 0.720 in 1sdeA Skipped atom 649, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 651, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 653, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 655, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 657, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 659, because occupancy 0.180 <= existing 0.820 in 1sdeA Skipped atom 1000, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1002, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1004, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1006, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1008, because occupancy 0.320 <= existing 0.680 in 1sdeA Skipped atom 1070, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1072, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1074, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1076, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1078, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1080, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1082, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1084, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1086, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1088, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1090, because occupancy 0.390 <= existing 0.610 in 1sdeA Skipped atom 1121, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1123, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1125, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1127, because occupancy 0.190 <= existing 0.810 in 1sdeA Skipped atom 1169, because occupancy 0.350 <= existing 0.650 in 1sdeA Skipped atom 1171, because occupancy 0.350 <= existing 0.650 in 1sdeA Skipped atom 1179, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1181, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1183, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1185, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1187, because occupancy 0.290 <= existing 0.700 in 1sdeA Skipped atom 1267, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1269, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1271, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1273, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1275, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1278, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1280, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1282, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1284, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1286, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1288, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1290, because occupancy 0.460 <= existing 0.540 in 1sdeA Skipped atom 1342, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1344, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1346, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1348, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1350, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1352, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1354, because occupancy 0.370 <= existing 0.630 in 1sdeA Skipped atom 1982, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1984, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1986, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1988, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 1990, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2107, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2109, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2111, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2113, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2115, because occupancy 0.260 <= existing 0.740 in 1sdeA Skipped atom 2362, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2364, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2366, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2368, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2370, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2372, because occupancy 0.310 <= existing 0.690 in 1sdeA Skipped atom 2505, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2507, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2509, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2511, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2513, because occupancy 0.270 <= existing 0.730 in 1sdeA Skipped atom 2515, because occupancy 0.270 <= existing 0.730 in 1sdeA # 1sdeA.48.31 read from T0506.t04.many.frag # adding 1sdeA to template set # found chain 1sdeA in template set Warning: unaligning (T0506)S49 (1sdeA)N33 because L (left) conformation "forbidden" or filtered. T0506 48 :V 1sdeA 32 :D T0506 50 :GYPYTTA 1sdeA 34 :GTIHQLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=29910 # 1y08A.48.240 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y08A)R259 Warning: unaligning (T0506)Y51 (1y08A)I260 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1y08A)N261 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTA 1y08A 262 :HVIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=29911 # 1vl7A.49.40 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)S49 (1vl7A)Q29 because G (3-10) conformation "forbidden" or filtered. T0506 50 :GYPYTTAT 1vl7A 30 :GIPNGSYA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29912 # 2asfA.49.31 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 T0506 49 :SGYPYTTA 2asfA 32 :DNSPHVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29913 # 1ty9A.49.66 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 49 :SGYPYTTAT 1ty9A 67 :QGRPSTRIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29914 # 2furA.49.41 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)S49 (2furA)G41 because L (left) conformation "forbidden" or filtered. T0506 50 :GYPYTTAT 2furA 42 :GIPYAIPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=29915 # 1xhnA.49.44 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)T55 (1xhnA)D51 because Y (epsilon') conformation "forbidden" or filtered. T0506 49 :SGYPYT 1xhnA 45 :RGRPFA T0506 56 :AT 1xhnA 52 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29917 # 1xccA.49.121 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)S49 (1xccA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 T0506 50 :GYPYTTA 1xccA 123 :GLPLTCR Number of specific fragments extracted= 1 number of extra gaps= 2 total=29918 # 1gvp.49.21 read from T0506.t04.many.frag # found chain 1gvp in training set T0506 49 :SGYPYTTAT 1gvp 22 :QGKPYSLNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=29919 # 1svpA.49.117 read from T0506.t04.many.frag # found chain 1svpA in template set T0506 49 :SGYPYTTAT 1svpA 223 :SGRVVAIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29920 # 2bjfA.49.134 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)G50 (2bjfA)N136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 T0506 49 :S 2bjfA 135 :E T0506 51 :YPYTT 2bjfA 137 :IPNTT Number of specific fragments extracted= 2 number of extra gaps= 2 total=29922 # 1ryp2.49.106 read from T0506.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)S49 (1ryp2)M99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T54 (1ryp2)N104 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYPY 1ryp2 100 :NPLW T0506 55 :TAT 1ryp2 105 :AII Number of specific fragments extracted= 2 number of extra gaps= 2 total=29924 # 1ursA.49.129 read from T0506.t04.many.frag # found chain 1ursA in training set T0506 49 :SGYPYTTAT 1ursA 130 :NGTMYSVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29925 # 1ylnA.49.49 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)P52 (1ylnA)K53 because E (beta_S) conformation "forbidden" or filtered. T0506 49 :SGY 1ylnA 50 :VGT T0506 53 :YTTAT 1ylnA 54 :FVCRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=29927 # 1nd4A.49.72 read from T0506.t04.many.frag # found chain 1nd4A in template set T0506 49 :SGYPYTTAT 1nd4A 73 :TGVPCAAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29928 # 1tt8A.49.41 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)S49 (1tt8A)G42 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1tt8A)V45 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GY 1tt8A 43 :KT T0506 53 :YTTAT 1tt8A 46 :SVTMI Number of specific fragments extracted= 2 number of extra gaps= 2 total=29930 # 1r6xA.49.74 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 49 :SGYPYTTAT 1r6xA 76 :DGTLWTIPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=29931 # 1wvhA.49.33 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G50 (1wvhA)P1639 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1wvhA)I1645 because P (beta_P) conformation "forbidden" or filtered. T0506 49 :S 1wvhA 1638 :D T0506 51 :YPYTT 1wvhA 1640 :TPTAT T0506 57 :T 1wvhA 1646 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29934 # 1w4sA.49.40 read from T0506.t04.many.frag # found chain 1w4sA in template set Warning: unaligning (T0506)S49 because of BadResidue code BAD_PEPTIDE in next template residue (1w4sA)L971 Warning: unaligning (T0506)G50 because of BadResidue code BAD_PEPTIDE at template residue (1w4sA)L971 T0506 51 :YPYTTAT 1w4sA 972 :QPHIVCI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29935 # 1y08A.49.241 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y08A)R259 Warning: unaligning (T0506)Y51 (1y08A)I260 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1y08A)N261 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTAT 1y08A 262 :HVINL Number of specific fragments extracted= 1 number of extra gaps= 0 total=29936 # 1bdfA.49.48 read from T0506.t04.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)G50 (1bdfA)S50 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y53 (1bdfA)G53 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1bdfA)V56 because P (beta_P) conformation "forbidden" or filtered. T0506 49 :S 1bdfA 49 :S T0506 51 :YP 1bdfA 51 :MP T0506 54 :TT 1bdfA 54 :CA T0506 57 :T 1bdfA 57 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=29940 # 1zn6A.49.131 read from T0506.t04.many.frag # found chain 1zn6A in template set T0506 49 :SGYPYTTAT 1zn6A 132 :DGAPLGIAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29941 # 1iruK.49.94 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)G50 (1iruK)T96 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1iruK)Y98 because E (beta_S) conformation "forbidden" or filtered. T0506 49 :S 1iruK 95 :R T0506 51 :Y 1iruK 97 :P T0506 53 :YTTAT 1iruK 99 :HVNLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29944 # 2nlrA.49.50 read from T0506.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)G50 (2nlrA)G52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2nlrA)S56 Warning: unaligning (T0506)T54 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2nlrA)S56 T0506 49 :S 2nlrA 51 :N T0506 51 :YP 2nlrA 53 :AP T0506 55 :TAT 2nlrA 57 :YPS Number of specific fragments extracted= 3 number of extra gaps= 2 total=29947 # 1jy1A.49.114 read from T0506.t04.many.frag # found chain 1jy1A in training set T0506 49 :SGYPYTTAT 1jy1A 259 :FGTHHTKMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29948 # 1ssxA.49.150 read from T0506.t04.many.frag # found chain 1ssxA in training set Warning: unaligning (T0506)S49 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1ssxA)A202 T0506 50 :GYPYTTAT 1ssxA 207 :GQAQGVMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=29949 # 1wj9A.49.140 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)Y51 (1wj9A)G143 because S (epsilon) conformation "forbidden" or filtered. T0506 49 :SG 1wj9A 141 :ER T0506 52 :PYTTAT 1wj9A 144 :PWVQIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=29951 # 1rzhH.49.184 read from T0506.t04.many.frag # found chain 1rzhH in training set Warning: unaligning (T0506)P52 (1rzhH)T188 because E (beta_S) conformation "forbidden" or filtered. T0506 49 :SGY 1rzhH 185 :DGS T0506 53 :YTTAT 1rzhH 189 :RLLPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29953 # 1xipA.49.32 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)S49 (1xipA)E32 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)T54 (1xipA)A37 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYPY 1xipA 33 :KLPF T0506 55 :TAT 1xipA 38 :SLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=29955 # 1pg4A.49.267 read from T0506.t04.many.frag # found chain 1pg4A in training set T0506 49 :SGYPYTTAT 1pg4A 268 :TGKPKGVLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=29956 # 1ryoA.49.73 read from T0506.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0506)S49 (1ryoA)P74 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y51 (1ryoA)N76 because L (left) conformation "forbidden" or filtered. T0506 50 :G 1ryoA 75 :N T0506 52 :PYTTAT 1ryoA 77 :LKPVVA Number of specific fragments extracted= 2 number of extra gaps= 2 total=29958 # 2a74A.49.132 read from T0506.t04.many.frag # found chain 2a74A in template set T0506 49 :SGYPYTTAT 2a74A 133 :KLLPVGRTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29959 # 1vl7A.50.41 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T55 (1vl7A)S35 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYPYT 1vl7A 30 :GIPNG T0506 56 :ATN 1vl7A 36 :YAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29961 # 2asfA.50.32 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 50 :GYPYTTA 2asfA 33 :NSPHVVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29962 # 2furA.50.42 read from T0506.t04.many.frag # found chain 2furA in template set T0506 50 :GYPYTTATN 2furA 42 :GIPYAIPMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=29963 # 1ty9A.50.67 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 50 :GYPYTTATN 1ty9A 68 :GRPSTRIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29964 # 1xhnA.50.45 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 50 :GYPYTTATN 1xhnA 46 :GRPFADVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29965 # 1xccA.50.122 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 T0506 50 :GYPYTTA 1xccA 123 :GLPLTCR Number of specific fragments extracted= 1 number of extra gaps= 1 total=29966 # 2bjfA.50.135 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)G50 (2bjfA)N136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 T0506 51 :YPYTT 2bjfA 137 :IPNTT T0506 58 :N 2bjfA 144 :W Number of specific fragments extracted= 2 number of extra gaps= 2 total=29968 # 1ursA.50.130 read from T0506.t04.many.frag # found chain 1ursA in training set T0506 50 :GYPYTTATN 1ursA 131 :GTMYSVPVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=29969 # 1jy1A.50.115 read from T0506.t04.many.frag # found chain 1jy1A in training set T0506 50 :GYPYTTATN 1jy1A 260 :GTHHTKMML Number of specific fragments extracted= 1 number of extra gaps= 0 total=29970 # 1y08A.50.242 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)G50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y08A)R259 Warning: unaligning (T0506)Y51 (1y08A)I260 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1y08A)N261 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATN 1y08A 262 :HVINLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=29971 # 1tt8A.50.42 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)G50 (1tt8A)K43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1tt8A)V45 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :Y 1tt8A 44 :T T0506 53 :YTTATN 1tt8A 46 :SVTMIR Number of specific fragments extracted= 2 number of extra gaps= 2 total=29973 # 1ryp2.50.107 read from T0506.t04.many.frag # found chain 1ryp2 in template set T0506 50 :GYPYTTATN 1ryp2 100 :NPLWNAIIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=29974 # 1gvp.50.22 read from T0506.t04.many.frag # found chain 1gvp in training set Warning: unaligning (T0506)A56 (1gvp)N29 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1gvp)Q31 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GYPYTT 1gvp 23 :GKPYSL T0506 57 :T 1gvp 30 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=29976 # 1svpA.50.118 read from T0506.t04.many.frag # found chain 1svpA in template set T0506 50 :GYPYTTATN 1svpA 224 :GRVVAIVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=29977 # 1nd4A.50.73 read from T0506.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYPYTTAT 1nd4A 74 :GVPCAAVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=29978 # 1wvhA.50.34 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G50 (1wvhA)P1639 because C (cis) conformation "forbidden" or filtered. T0506 51 :YPYTTATN 1wvhA 1640 :TPTATIVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=29979 # 1iruK.50.95 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)P52 (1iruK)Y98 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GY 1iruK 96 :TP T0506 53 :YTT 1iruK 99 :HVN T0506 57 :TN 1iruK 103 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=29982 # 1ylnA.50.50 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)P52 (1ylnA)K53 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GY 1ylnA 51 :GT T0506 53 :YTTATN 1ylnA 54 :FVCRTP Number of specific fragments extracted= 2 number of extra gaps= 1 total=29984 # 2a74A.50.133 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)T55 (2a74A)R139 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYPYT 2a74A 134 :LLPVG T0506 56 :ATN 2a74A 140 :TVM Number of specific fragments extracted= 2 number of extra gaps= 1 total=29986 # 2nlrA.50.51 read from T0506.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2nlrA)S56 Warning: unaligning (T0506)T54 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2nlrA)S56 Warning: unaligning (T0506)T57 (2nlrA)S59 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYP 2nlrA 52 :GAP T0506 55 :TA 2nlrA 57 :YP T0506 58 :N 2nlrA 60 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=29989 # 1bdfA.50.49 read from T0506.t04.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)Y53 (1bdfA)G53 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 (1bdfA)T57 because G (3-10) conformation "forbidden" or filtered. T0506 50 :GYP 1bdfA 50 :SMP T0506 54 :TTA 1bdfA 54 :CAV T0506 58 :N 1bdfA 58 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=29992 # 1j98A.50.14 read from T0506.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)Y53 (1j98A)Y18 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1j98A)H21 because N (gamma') conformation "forbidden" or filtered. T0506 50 :GYP 1j98A 15 :VAP T0506 54 :TT 1j98A 19 :VR T0506 57 :TN 1j98A 22 :CG Number of specific fragments extracted= 3 number of extra gaps= 2 total=29995 # 1xd3A.50.163 read from T0506.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0506)P52 (1xd3A)V166 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GY 1xd3A 164 :EK T0506 53 :YTTATN 1xd3A 167 :DLHFIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=29997 # 1zn6A.50.132 read from T0506.t04.many.frag # found chain 1zn6A in template set Warning: unaligning (T0506)T57 (1zn6A)G140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1zn6A)L141 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GYPYTTA 1zn6A 133 :GAPLGIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=29998 # 1r6xA.50.75 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)N58 (1r6xA)T85 because E (beta_S) conformation "forbidden" or filtered. T0506 50 :GYPYTTAT 1r6xA 77 :GTLWTIPI Number of specific fragments extracted= 1 number of extra gaps= 1 total=29999 # 1ryoA.50.74 read from T0506.t04.many.frag # found chain 1ryoA in training set Warning: unaligning (T0506)Y51 (1ryoA)N76 because L (left) conformation "forbidden" or filtered. T0506 50 :G 1ryoA 75 :N T0506 52 :PYTTATN 1ryoA 77 :LKPVVAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30001 # 1mqoA.50.35 read from T0506.t04.many.frag # found chain 1mqoA in training set Warning: unaligning (T0506)T57 (1mqoA)G71 because Y (epsilon') conformation "forbidden" or filtered. T0506 50 :GYPYTTA 1mqoA 63 :GEAVPSN T0506 58 :N 1mqoA 72 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30003 # 1iruK.50.94 read from T0506.t04.many.frag # found chain 1iruK in template set T0506 50 :GYPYTTATN 1iruK 95 :RTPYHVNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30004 # 3sil.50.28 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0506 50 :GYPYTT 3sil 32 :TTKYFR T0506 57 :TN 3sil 39 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30006 # 1w99A.50.357 read from T0506.t04.many.frag # found chain 1w99A in template set Warning: unaligning (T0506)G50 (1w99A)Y441 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P52 (1w99A)H443 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1w99A)Y447 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1w99A 442 :T T0506 53 :YTT 1w99A 444 :ILS T0506 57 :TN 1w99A 448 :IK Number of specific fragments extracted= 3 number of extra gaps= 3 total=30009 # 1vl7A.51.42 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 51 :YPYTTATNI 1vl7A 31 :IPNGSYAPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30010 # 2asfA.51.33 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 51 :YPYTTA 2asfA 34 :SPHVVA T0506 59 :I 2asfA 42 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=30012 # 2furA.51.43 read from T0506.t04.many.frag # found chain 2furA in template set T0506 51 :YPYTTATNI 2furA 43 :IPYAIPMML Number of specific fragments extracted= 1 number of extra gaps= 0 total=30013 # 2bjfA.51.136 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 T0506 51 :YPYTT 2bjfA 137 :IPNTT T0506 58 :NI 2bjfA 144 :WM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30015 # 1ursA.51.131 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)T54 (1ursA)S135 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPY 1ursA 132 :TMY T0506 55 :TATNI 1ursA 136 :VPVSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30017 # 1ty9A.51.68 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 51 :YPYTTATNI 1ty9A 69 :RPSTRIVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30018 # 1xccA.51.123 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 T0506 51 :YPYTTA 1xccA 124 :LPLTCR T0506 59 :I 1xccA 132 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=30020 # 1y08A.51.243 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)P52 (1y08A)N261 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :Y 1y08A 260 :I T0506 53 :YTTATNI 1y08A 262 :HVINLWG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30022 # 1nd4A.51.74 read from T0506.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTTAT 1nd4A 75 :VPCAAVL T0506 59 :I 1nd4A 83 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30024 # 1jy1A.51.116 read from T0506.t04.many.frag # found chain 1jy1A in training set T0506 51 :YPYTTATNI 1jy1A 261 :THHTKMMLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30025 # 1tt8A.51.43 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)P52 (1tt8A)V45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1tt8A)M49 because P (beta_P) conformation "forbidden" or filtered. T0506 51 :Y 1tt8A 44 :T T0506 53 :YTT 1tt8A 46 :SVT T0506 57 :TNI 1tt8A 50 :IRE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30028 # 1svpA.51.119 read from T0506.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0506)Y53 (1svpA)V227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1svpA)G232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (1svpA)G233 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YP 1svpA 225 :RV T0506 54 :TTAT 1svpA 228 :AIVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30030 # 1iruK.51.96 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)P52 (1iruK)Y98 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :Y 1iruK 97 :P T0506 53 :YTTATNI 1iruK 99 :HVNLLLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30032 # 1wvhA.51.35 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)N58 (1wvhA)H1647 because P (beta_P) conformation "forbidden" or filtered. T0506 51 :YPYTTAT 1wvhA 1640 :TPTATIV T0506 59 :I 1wvhA 1648 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=30034 # 1xipA.51.34 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)N58 (1xipA)N41 because G (3-10) conformation "forbidden" or filtered. T0506 51 :YPYTTAT 1xipA 34 :LPFASLQ T0506 59 :I 1xipA 42 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30036 # 1xhnA.51.46 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 51 :YPYTTATNI 1xhnA 47 :RPFADVLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30037 # 3sil.51.29 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (3sil)A40 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :YPYTT 3sil 33 :TKYFR T0506 57 :T 3sil 39 :P T0506 59 :I 3sil 41 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=30040 # 1bdfA.51.50 read from T0506.t04.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)T57 (1bdfA)T57 because G (3-10) conformation "forbidden" or filtered. T0506 51 :YPYTTA 1bdfA 51 :MPGCAV T0506 58 :NI 1bdfA 58 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30042 # 1j98A.51.15 read from T0506.t04.many.frag # found chain 1j98A in training set T0506 51 :YPYTTATNI 1j98A 16 :APYVRHCGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30043 # 1ryp2.51.108 read from T0506.t04.many.frag # found chain 1ryp2 in template set T0506 51 :YPYTTATNI 1ryp2 101 :PLWNAIIVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30044 # 1xd3A.51.164 read from T0506.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0506)P52 (1xd3A)V166 because E (beta_S) conformation "forbidden" or filtered. T0506 51 :Y 1xd3A 165 :K T0506 53 :YTTATNI 1xd3A 167 :DLHFIAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30046 # 2a74A.51.134 read from T0506.t04.many.frag # found chain 2a74A in template set T0506 51 :YPYTTATNI 2a74A 135 :LPVGRTVMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30047 # 1ikpA.51.108 read from T0506.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)N58 (1ikpA)F116 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTTAT 1ikpA 109 :KPSNIKV T0506 59 :I 1ikpA 117 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=30049 # 1ylnA.51.51 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)P52 (1ylnA)K53 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T55 (1ylnA)C56 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1ylnA 52 :T T0506 53 :YT 1ylnA 54 :FV T0506 56 :ATNI 1ylnA 57 :RTPF Number of specific fragments extracted= 3 number of extra gaps= 2 total=30052 # 1w99A.51.358 read from T0506.t04.many.frag # found chain 1w99A in template set Warning: unaligning (T0506)P52 (1w99A)H443 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1w99A)Y447 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :Y 1w99A 442 :T T0506 53 :YTT 1w99A 444 :ILS T0506 57 :TNI 1w99A 448 :IKT Number of specific fragments extracted= 3 number of extra gaps= 2 total=30055 # 1hbnC.51.77 read from T0506.t04.many.frag # found chain 1hbnC in training set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnC)I85 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnC)I85 T0506 51 :YPYTT 1hbnC 79 :GDRVR T0506 58 :NI 1hbnC 86 :QF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30057 1stfI expands to /projects/compbio/data/pdb/1stf.pdb.gz 1stfI:# 1stfI.51.34 read from T0506.t04.many.frag # adding 1stfI to template set # found chain 1stfI in template set Warning: unaligning (T0506)N58 (1stfI)S49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (1stfI)K51 T0506 51 :YPYTTAT 1stfI 40 :FPVFKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30058 # 1f8eA.51.32 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A56 (1f8eA)E119 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1f8eA)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTT 1f8eA 114 :VLVTR T0506 57 :T 1f8eA 120 :P T0506 59 :I 1f8eA 122 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=30061 # 1mqoA.51.36 read from T0506.t04.many.frag # found chain 1mqoA in training set Warning: unaligning (T0506)T57 (1mqoA)G71 because Y (epsilon') conformation "forbidden" or filtered. T0506 51 :YPYTTA 1mqoA 64 :EAVPSN T0506 58 :NI 1mqoA 72 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30063 # 2nlrA.51.52 read from T0506.t04.many.frag # found chain 2nlrA in training set Warning: unaligning (T0506)Y53 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2nlrA)S56 Warning: unaligning (T0506)T54 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2nlrA)S56 Warning: unaligning (T0506)T57 (2nlrA)S59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (2nlrA)N62 T0506 51 :YP 2nlrA 53 :AP T0506 55 :TA 2nlrA 57 :YP T0506 58 :N 2nlrA 60 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=30066 # 1vl7A.52.43 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T55 (1vl7A)S35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1vl7A)P38 because P (beta_P) conformation "forbidden" or filtered. T0506 52 :PYT 1vl7A 32 :PNG T0506 56 :AT 1vl7A 36 :YA T0506 59 :IG 1vl7A 39 :FV Number of specific fragments extracted= 3 number of extra gaps= 2 total=30069 # 2furA.52.44 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G60 (2furA)A52 because P (beta_P) conformation "forbidden" or filtered. T0506 52 :PYTTATNI 2furA 44 :PYAIPMML Number of specific fragments extracted= 1 number of extra gaps= 1 total=30070 # 2asfA.52.34 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 52 :PYTTA 2asfA 35 :PHVVA T0506 59 :IG 2asfA 42 :FT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30072 # 2bjfA.52.137 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 T0506 52 :PYTT 2bjfA 138 :PNTT T0506 58 :NIG 2bjfA 144 :WMI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30074 # 1ursA.52.132 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)A56 (1ursA)P137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1ursA)Q141 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTT 1ursA 133 :MYSV T0506 57 :TNI 1ursA 138 :VSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30076 # 1nd4A.52.75 read from T0506.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1nd4A)V84 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTTAT 1nd4A 76 :PCAAVL T0506 59 :I 1nd4A 83 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=30078 # 1y08A.52.244 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)P52 (1y08A)N261 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1y08A)A269 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1y08A 262 :HVINLWG Number of specific fragments extracted= 1 number of extra gaps= 2 total=30079 # 1ty9A.52.69 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 52 :PYTTATNIG 1ty9A 70 :PSTRIVVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30080 # 1xipA.52.35 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)T57 (1xipA)Q40 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1xipA)D43 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTTA 1xipA 35 :PFASL T0506 58 :NI 1xipA 41 :NL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30082 # 1bdfA.52.51 read from T0506.t04.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)Y53 (1bdfA)G53 because S (epsilon) conformation "forbidden" or filtered. T0506 52 :P 1bdfA 52 :P T0506 54 :TTATNIG 1bdfA 54 :CAVTEVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30084 # 3sil.52.30 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (3sil)A40 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTT 3sil 34 :KYFR T0506 57 :T 3sil 39 :P T0506 59 :IG 3sil 41 :MC Number of specific fragments extracted= 3 number of extra gaps= 2 total=30087 # 1xccA.52.124 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 T0506 52 :PYTTA 1xccA 125 :PLTCR T0506 59 :IG 1xccA 132 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30089 # 1svpA.52.120 read from T0506.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0506)T54 (1svpA)A228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1svpA)G232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1svpA)A234 because D (zeta) conformation "forbidden" or filtered. T0506 52 :PY 1svpA 226 :VV T0506 55 :TAT 1svpA 229 :IVL T0506 59 :I 1svpA 233 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=30092 # 1jy1A.52.117 read from T0506.t04.many.frag # found chain 1jy1A in training set T0506 52 :PYTTATNIG 1jy1A 262 :HHTKMMLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30093 # 1ikpA.52.109 read from T0506.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)N58 (1ikpA)F116 because Y (epsilon') conformation "forbidden" or filtered. T0506 52 :PYTTAT 1ikpA 110 :PSNIKV T0506 59 :IG 1ikpA 117 :IH Number of specific fragments extracted= 2 number of extra gaps= 1 total=30095 # 1wvhA.52.36 read from T0506.t04.many.frag # found chain 1wvhA in template set T0506 52 :PYTTATNIG 1wvhA 1641 :PTATIVHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30096 # 1tt8A.52.44 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)P52 (1tt8A)V45 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1tt8A)M49 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTT 1tt8A 46 :SVT T0506 57 :TNIG 1tt8A 50 :IREG Number of specific fragments extracted= 2 number of extra gaps= 2 total=30098 # 1j98A.52.16 read from T0506.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)P52 (1j98A)P17 because C (cis) conformation "forbidden" or filtered. T0506 53 :YTTATNIG 1j98A 18 :YVRHCGVH Number of specific fragments extracted= 1 number of extra gaps= 1 total=30099 # 1iruK.52.97 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)P52 (1iruK)Y98 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNIG 1iruK 99 :HVNLLLAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30100 # 1stfI.52.35 read from T0506.t04.many.frag # found chain 1stfI in template set Warning: unaligning (T0506)N58 (1stfI)S49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (1stfI)K51 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)K51 T0506 52 :PYTTAT 1stfI 43 :PVFKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30101 # 1ylnA.52.52 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)P52 (1ylnA)K53 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNIG 1ylnA 54 :FVCRTPFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30102 # 1hbnC.52.78 read from T0506.t04.many.frag # found chain 1hbnC in training set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnC)I85 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnC)I85 T0506 52 :PYTT 1hbnC 80 :DRVR T0506 58 :NIG 1hbnC 86 :QFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30104 # 1w99A.52.359 read from T0506.t04.many.frag # found chain 1w99A in template set Warning: unaligning (T0506)P52 (1w99A)H443 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNIG 1w99A 444 :ILSYIKTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30105 # 1xd3A.52.165 read from T0506.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0506)P52 (1xd3A)V166 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1xd3A)V174 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1xd3A 167 :DLHFIAL Number of specific fragments extracted= 1 number of extra gaps= 2 total=30106 # 2a74A.52.135 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)N58 (2a74A)M142 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2a74A)N144 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTTAT 2a74A 136 :PVGRTV T0506 59 :I 2a74A 143 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=30108 # 1f8eA.52.33 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A56 (1f8eA)E119 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1f8eA)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0506 52 :PYTT 1f8eA 115 :LVTR T0506 57 :T 1f8eA 120 :P T0506 59 :IG 1f8eA 122 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=30111 # 1ryp2.52.109 read from T0506.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)T54 (1ryp2)N104 because Y (epsilon') conformation "forbidden" or filtered. T0506 52 :PY 1ryp2 102 :LW T0506 55 :TATNIG 1ryp2 105 :AIIVAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30113 # 1xhnA.52.47 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G60 (1xhnA)S56 because E (beta_S) conformation "forbidden" or filtered. T0506 52 :PYTTATNI 1xhnA 48 :PFADVLSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30114 # 1n08A.52.74 read from T0506.t04.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)P52 (1n08A)V75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1n08A)G83 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTATNI 1n08A 76 :FPMVMSV Number of specific fragments extracted= 1 number of extra gaps= 2 total=30115 # 1hs6A.52.99 read from T0506.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)P52 (1hs6A)E99 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1hs6A)E107 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1hs6A 100 :IVIEISF Number of specific fragments extracted= 1 number of extra gaps= 2 total=30116 # 1vl7A.53.44 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G60 (1vl7A)V40 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1vl7A 33 :NGSYAPF T0506 61 :I 1vl7A 41 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=30118 # 2asfA.53.35 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A56 (2asfA)A39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 53 :YTT 2asfA 36 :HVV T0506 59 :IGI 2asfA 42 :FTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30120 # 2furA.53.45 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G60 (2furA)A52 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTTATNI 2furA 45 :YAIPMML T0506 61 :I 2furA 53 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30122 # 1nd4A.53.76 read from T0506.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1nd4A)V84 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTAT 1nd4A 77 :CAAVL T0506 59 :I 1nd4A 83 :V T0506 61 :I 1nd4A 85 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=30125 # 3sil.53.31 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. T0506 53 :YTT 3sil 35 :YFR T0506 57 :TNIGI 3sil 39 :PAMCT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30127 # 1xipA.53.36 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)N58 (1xipA)N41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1xipA)D43 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTTAT 1xipA 36 :FASLQ T0506 59 :I 1xipA 42 :L T0506 61 :I 1xipA 44 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=30130 # 1ursA.53.133 read from T0506.t04.many.frag # found chain 1ursA in training set T0506 53 :YTTATNIGI 1ursA 134 :YSVPVSVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30131 # 2bjfA.53.138 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 Warning: unaligning (T0506)N58 (2bjfA)W144 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTT 2bjfA 139 :NTT T0506 59 :IGI 2bjfA 145 :MIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30133 # 1iruK.53.98 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTT 1iruK 99 :HVN T0506 57 :TNIGI 1iruK 103 :LLAGY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30135 # 1svpA.53.121 read from T0506.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0506)Y53 (1svpA)V227 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1svpA)G232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1svpA)A234 because D (zeta) conformation "forbidden" or filtered. T0506 54 :TTAT 1svpA 228 :AIVL T0506 59 :I 1svpA 233 :G T0506 61 :I 1svpA 235 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=30138 # 1tt8A.53.45 read from T0506.t04.many.frag # found chain 1tt8A in training set T0506 53 :YTTATNIGI 1tt8A 46 :SVTMIREGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30139 # 1xd3A.53.166 read from T0506.t04.many.frag # found chain 1xd3A in training set T0506 53 :YTTATNIGI 1xd3A 167 :DLHFIALVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30140 # 1jy1A.53.118 read from T0506.t04.many.frag # found chain 1jy1A in training set T0506 53 :YTTATNIGI 1jy1A 263 :HTKMMLLLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30141 # 1v3eA.53.48 read from T0506.t04.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)T55 (1v3eA)R192 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (1v3eA)T193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1v3eA)V197 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YT 1v3eA 190 :CI T0506 57 :TNI 1v3eA 194 :PSL T0506 61 :I 1v3eA 198 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=30144 # 1xccA.53.125 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 T0506 53 :YTTA 1xccA 126 :LTCR T0506 59 :IGI 1xccA 132 :FFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30146 # 1y08A.53.245 read from T0506.t04.many.frag # found chain 1y08A in template set Warning: unaligning (T0506)A56 (1y08A)N265 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTT 1y08A 262 :HVI T0506 57 :TNIGI 1y08A 266 :LWGAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30148 # 1wvhA.53.37 read from T0506.t04.many.frag # found chain 1wvhA in template set T0506 53 :YTTATNIGI 1wvhA 1642 :TATIVHFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30149 # 1hbnC.53.79 read from T0506.t04.many.frag # found chain 1hbnC in training set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnC)I85 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnC)I85 Warning: unaligning (T0506)G60 (1hbnC)T88 because E (beta_S) conformation "forbidden" or filtered. T0506 53 :YTT 1hbnC 81 :RVR T0506 58 :NI 1hbnC 86 :QF T0506 61 :I 1hbnC 89 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=30152 # 1stfI.53.36 read from T0506.t04.many.frag # found chain 1stfI in template set Warning: unaligning (T0506)A56 (1stfI)A47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (1stfI)K51 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)K51 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1stfI)Q53 T0506 53 :YTT 1stfI 44 :VFK T0506 57 :TN 1stfI 48 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30154 # 1j98A.53.17 read from T0506.t04.many.frag # found chain 1j98A in training set T0506 53 :YTTATNIGI 1j98A 18 :YVRHCGVHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30155 # 1w99A.53.360 read from T0506.t04.many.frag # found chain 1w99A in template set Warning: unaligning (T0506)A56 (1w99A)Y447 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTT 1w99A 444 :ILS T0506 57 :TNIGI 1w99A 448 :IKTDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30157 # 1f8eA.53.34 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A56 (1f8eA)E119 because L (left) conformation "forbidden" or filtered. T0506 53 :YTT 1f8eA 116 :VTR T0506 57 :TNIGI 1f8eA 120 :PYVSC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30159 # 1bdfA.53.52 read from T0506.t04.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)A56 (1bdfA)V56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1bdfA)E60 because D (zeta) conformation "forbidden" or filtered. T0506 53 :YTT 1bdfA 53 :GCA T0506 57 :TNI 1bdfA 57 :TEV T0506 61 :I 1bdfA 61 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=30162 # 1hs6A.53.100 read from T0506.t04.many.frag # found chain 1hs6A in template set T0506 53 :YTTATNIGI 1hs6A 100 :IVIEISFET Number of specific fragments extracted= 1 number of extra gaps= 0 total=30163 # 1ylnA.53.53 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)I61 (1ylnA)G62 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTATNIG 1ylnA 54 :FVCRTPFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30164 # 1ty9A.53.70 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)I80 T0506 53 :YTTATNIG 1ty9A 71 :STRIVVIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30165 # 1ikpA.53.110 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 53 :YTTATNIGI 1ikpA 111 :SNIKVFIHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30166 # 1bli.53.132 read from T0506.t04.many.frag # found chain 1bli in template set Warning: unaligning (T0506)G60 (1bli)H140 because P (beta_P) conformation "forbidden" or filtered. T0506 53 :YTTATNI 1bli 133 :HLIKAWT T0506 61 :I 1bli 141 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=30168 1xcrA expands to /projects/compbio/data/pdb/1xcr.pdb.gz 1xcrA:Skipped atom 790, because occupancy 0.500 <= existing 0.500 in 1xcrA Skipped atom 792, because occupancy 0.500 <= existing 0.500 in 1xcrA Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1xcrA Skipped atom 1636, because occupancy 0.400 <= existing 0.600 in 1xcrA # 1xcrA.53.125 read from T0506.t04.many.frag # adding 1xcrA to template set # found chain 1xcrA in template set Warning: unaligning (T0506)G60 (1xcrA)H132 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :YTTATNI 1xcrA 125 :VNGSYFA T0506 61 :I 1xcrA 133 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30170 # 1ryp2.53.110 read from T0506.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)T54 (1ryp2)N104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1ryp2)G110 because Y (epsilon') conformation "forbidden" or filtered. T0506 53 :Y 1ryp2 103 :W T0506 55 :TATNI 1ryp2 105 :AIIVA T0506 61 :I 1ryp2 111 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=30173 # 1vl7A.54.45 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)N58 (1vl7A)P38 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1vl7A)D42 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTAT 1vl7A 34 :GSYA T0506 59 :IGI 1vl7A 39 :FVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=30175 # 2furA.54.46 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)N58 (2furA)M50 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I61 (2furA)S53 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TTAT 2furA 46 :AIPM T0506 59 :IG 2furA 51 :LA T0506 62 :E 2furA 54 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=30178 # 2asfA.54.36 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 54 :TTA 2asfA 37 :VVA T0506 59 :IGIE 2asfA 42 :FTFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30180 # 1nd4A.54.77 read from T0506.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1nd4A)V84 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TTAT 1nd4A 78 :AAVL T0506 59 :I 1nd4A 83 :V T0506 61 :IE 1nd4A 85 :TE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30183 # 1xipA.54.37 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)N58 (1xipA)N41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1xipA)D43 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TTAT 1xipA 37 :ASLQ T0506 59 :I 1xipA 42 :L T0506 61 :IE 1xipA 44 :IS Number of specific fragments extracted= 3 number of extra gaps= 2 total=30186 # 3sil.54.32 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (3sil)C42 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TT 3sil 36 :FR T0506 57 :TNI 3sil 39 :PAM T0506 61 :IE 3sil 43 :TT Number of specific fragments extracted= 3 number of extra gaps= 2 total=30189 # 1ursA.54.134 read from T0506.t04.many.frag # found chain 1ursA in training set T0506 54 :TTATNIGIE 1ursA 135 :SVPVSVQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30190 # 2bjfA.54.139 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 Warning: unaligning (T0506)E62 (2bjfA)D148 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TT 2bjfA 140 :TT T0506 58 :NIGI 2bjfA 144 :WMIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30192 # 1iruK.54.99 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TT 1iruK 100 :VN T0506 57 :TNIGIE 1iruK 103 :LLAGYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30194 # 1utcA.54.150 read from T0506.t04.many.frag # found chain 1utcA in template set T0506 54 :TTATNIGIE 1utcA 151 :CQIINYRTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30195 # 1svpA.54.122 read from T0506.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0506)N58 (1svpA)G232 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TTAT 1svpA 228 :AIVL T0506 59 :IGIE 1svpA 233 :GADE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30197 # 1xd3A.54.167 read from T0506.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0506)A56 (1xd3A)F170 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TT 1xd3A 168 :LH T0506 57 :TNIGIE 1xd3A 171 :IALVHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30199 # 1hbnC.54.80 read from T0506.t04.many.frag # found chain 1hbnC in training set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnC)I85 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnC)I85 Warning: unaligning (T0506)G60 (1hbnC)T88 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TT 1hbnC 82 :VR T0506 58 :NI 1hbnC 86 :QF T0506 61 :IE 1hbnC 89 :DS Number of specific fragments extracted= 3 number of extra gaps= 2 total=30202 # 1v3eA.54.49 read from T0506.t04.many.frag # found chain 1v3eA in template set Warning: unaligning (T0506)A56 (1v3eA)T193 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1v3eA)N199 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TT 1v3eA 191 :IR T0506 57 :TNIGI 1v3eA 194 :PSLVI Number of specific fragments extracted= 2 number of extra gaps= 2 total=30204 # 1wvhA.54.38 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)E62 (1wvhA)S1651 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TTATNIGI 1wvhA 1643 :ATIVHFKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30205 # 1f8eA.54.35 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A56 (1f8eA)E119 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1f8eA)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TT 1f8eA 117 :TR T0506 57 :T 1f8eA 120 :P T0506 59 :IGIE 1f8eA 122 :VSCD Number of specific fragments extracted= 3 number of extra gaps= 2 total=30208 # 1stfI.54.37 read from T0506.t04.many.frag # found chain 1stfI in template set Warning: unaligning (T0506)A56 (1stfI)A47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (1stfI)K51 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)K51 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1stfI)Q53 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1stfI)Q53 T0506 54 :TT 1stfI 45 :FK T0506 57 :TN 1stfI 48 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30210 # 1jy1A.54.119 read from T0506.t04.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)G60 (1jy1A)L270 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TTATNI 1jy1A 264 :TKMMLL T0506 61 :IE 1jy1A 271 :YE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30212 # 1bdfA.54.53 read from T0506.t04.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)E62 (1bdfA)D62 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TTATNIGI 1bdfA 54 :CAVTEVEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=30213 # 1h2wA.54.124 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)N58 (1h2wA)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 54 :TTAT 1h2wA 125 :VALR T0506 59 :IGIE 1h2wA 130 :YAFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30215 # 1tt8A.54.46 read from T0506.t04.many.frag # found chain 1tt8A in training set Warning: unaligning (T0506)G60 (1tt8A)G53 because Y (epsilon') conformation "forbidden" or filtered. T0506 54 :TTATNI 1tt8A 47 :VTMIRE T0506 61 :IE 1tt8A 54 :FV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30217 # 1w99A.54.361 read from T0506.t04.many.frag # found chain 1w99A in template set Warning: unaligning (T0506)A56 (1w99A)Y447 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1w99A)K449 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1w99A)D451 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TT 1w99A 445 :LS T0506 57 :T 1w99A 448 :I T0506 59 :I 1w99A 450 :T T0506 61 :IE 1w99A 452 :VI Number of specific fragments extracted= 4 number of extra gaps= 3 total=30221 # 1j98A.54.18 read from T0506.t04.many.frag # found chain 1j98A in training set Warning: unaligning (T0506)G60 (1j98A)H25 because E (beta_S) conformation "forbidden" or filtered. T0506 54 :TTATNI 1j98A 19 :VRHCGV T0506 61 :IE 1j98A 26 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30223 # 1xccA.54.126 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 T0506 54 :TTA 1xccA 127 :TCR T0506 59 :IGIE 1xccA 132 :FFIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30225 1ocsA expands to /projects/compbio/data/pdb/1ocs.pdb.gz 1ocsA:# 1ocsA.54.37 read from T0506.t04.many.frag # adding 1ocsA to template set # found chain 1ocsA in template set T0506 54 :TTATNIGIE 1ocsA 38 :IEVHNPKTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30226 # 1t3yA.54.22 read from T0506.t04.many.frag # found chain 1t3yA in template set Warning: unaligning (T0506)E62 (1t3yA)D32 because D (zeta) conformation "forbidden" or filtered. T0506 54 :TTATNIGI 1t3yA 24 :VIWVTFKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30227 # 1r5mA.54.149 read from T0506.t04.many.frag # found chain 1r5mA in training set T0506 54 :TTATNIGIE 1r5mA 262 :APIVSVKWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30228 # 1ryp2.54.111 read from T0506.t04.many.frag # found chain 1ryp2 in template set Warning: unaligning (T0506)A56 (1ryp2)I106 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1ryp2)Q112 because P (beta_P) conformation "forbidden" or filtered. T0506 54 :TT 1ryp2 104 :NA T0506 57 :TNIGI 1ryp2 107 :IVAGV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30230 # 1e58A.54.209 read from T0506.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0506)T54 (1e58A)G210 because T (delta_L) conformation "forbidden" or filtered. T0506 55 :TATNIGIE 1e58A 211 :VPLVYEFD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30231 # 1r6lA.54.159 read from T0506.t04.many.frag # found chain 1r6lA in template set T0506 54 :TTATNIGIE 1r6lA 160 :VAAVSVGIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30232 # 1vl7A.55.46 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 55 :TATNIGIEP 1vl7A 35 :SYAPFVIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30233 # 2asfA.55.37 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 55 :TA 2asfA 38 :VA T0506 59 :IGIEP 2asfA 42 :FTFDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30235 # 2furA.55.47 read from T0506.t04.many.frag # found chain 2furA in template set T0506 55 :TATNIGIEP 2furA 47 :IPMMLASEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30236 # 1utcA.55.151 read from T0506.t04.many.frag # found chain 1utcA in template set T0506 55 :TATNIGIEP 1utcA 152 :QIINYRTDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30237 # 1xipA.55.38 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)A56 (1xipA)L39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 (1xipA)Q40 because D (zeta) conformation "forbidden" or filtered. T0506 55 :T 1xipA 38 :S T0506 58 :NIGIEP 1xipA 41 :NLDISN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30239 # 2bjfA.55.140 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 Warning: unaligning (T0506)E62 (2bjfA)D148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (2bjfA)I149 because G (3-10) conformation "forbidden" or filtered. T0506 55 :T 2bjfA 141 :T T0506 58 :NIGI 2bjfA 144 :WMIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30241 # 3sil.55.33 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)T55 (3sil)R37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A56 (3sil)I38 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (3sil)C42 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNI 3sil 39 :PAM T0506 61 :IEP 3sil 43 :TTS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30243 # 1nd4A.55.78 read from T0506.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (1nd4A)A87 because L (left) conformation "forbidden" or filtered. T0506 55 :TAT 1nd4A 79 :AVL T0506 59 :IGIE 1nd4A 83 :VVTE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30245 # 1iruK.55.100 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :T 1iruK 101 :N T0506 57 :TNIGIEP 1iruK 103 :LLAGYDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30247 # 1t3yA.55.23 read from T0506.t04.many.frag # found chain 1t3yA in template set T0506 55 :TATNIGIEP 1t3yA 25 :IWVTFKYDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30248 # 1f8eA.55.36 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A56 (1f8eA)E119 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1f8eA)S123 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :T 1f8eA 118 :R T0506 57 :TNI 1f8eA 120 :PYV T0506 61 :IEP 1f8eA 124 :CDP Number of specific fragments extracted= 3 number of extra gaps= 2 total=30251 # 1hbnC.55.81 read from T0506.t04.many.frag # found chain 1hbnC in training set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnC)I85 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnC)I85 T0506 55 :T 1hbnC 83 :R T0506 58 :NIGIEP 1hbnC 86 :QFTDSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30253 # 1h2wA.55.125 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)N58 (1h2wA)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 55 :TAT 1h2wA 126 :ALR T0506 59 :IGIEP 1h2wA 130 :YAFSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30255 # 1r5mA.55.150 read from T0506.t04.many.frag # found chain 1r5mA in training set T0506 55 :TATNIGIEP 1r5mA 263 :PIVSVKWNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30256 # 1svpA.55.123 read from T0506.t04.many.frag # found chain 1svpA in template set Warning: unaligning (T0506)N58 (1svpA)G232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (1svpA)G237 because T (delta_L) conformation "forbidden" or filtered. T0506 55 :TAT 1svpA 229 :IVL T0506 59 :IGIE 1svpA 233 :GADE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30258 # 1xd3A.55.168 read from T0506.t04.many.frag # found chain 1xd3A in training set Warning: unaligning (T0506)P63 (1xd3A)D177 because L (left) conformation "forbidden" or filtered. T0506 55 :TATNIGIE 1xd3A 169 :HFIALVHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30259 # 1wvhA.55.39 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)N58 (1wvhA)H1647 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TAT 1wvhA 1644 :TIV T0506 59 :IGIEP 1wvhA 1648 :FKVSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30261 # 1n08A.55.77 read from T0506.t04.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)T55 (1n08A)M78 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :ATNIGIEP 1n08A 79 :VMSVGWNP Number of specific fragments extracted= 1 number of extra gaps= 1 total=30262 # 1pjxA.55.117 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)A56 (1pjxA)C119 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1pjxA)A123 because E (beta_S) conformation "forbidden" or filtered. T0506 55 :T 1pjxA 118 :G T0506 57 :T 1pjxA 120 :N T0506 59 :I 1pjxA 122 :C T0506 61 :IEP 1pjxA 124 :FDY Number of specific fragments extracted= 4 number of extra gaps= 3 total=30266 # 1mj5A.55.18 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 55 :TATNIGIEP 1mj5A 19 :RRMAYIDEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30267 # 1stfI.55.38 read from T0506.t04.many.frag # found chain 1stfI in template set Warning: unaligning (T0506)A56 (1stfI)A47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1stfI)S49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 because of BadResidue code BAD_PEPTIDE in next template residue (1stfI)K51 Warning: unaligning (T0506)G60 because of BadResidue code BAD_PEPTIDE at template residue (1stfI)K51 Warning: unaligning (T0506)I61 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1stfI)Q53 Warning: unaligning (T0506)E62 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1stfI)Q53 T0506 55 :T 1stfI 46 :K T0506 57 :T 1stfI 48 :V T0506 63 :P 1stfI 54 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=30270 # 1dzkA.55.37 read from T0506.t04.many.frag # found chain 1dzkA in training set Warning: unaligning (T0506)G60 (1dzkA)E43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1dzkA)D45 because N (gamma') conformation "forbidden" or filtered. T0506 55 :TATNI 1dzkA 38 :FMRSI T0506 61 :I 1dzkA 44 :F T0506 63 :P 1dzkA 46 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=30273 2jdxA expands to /projects/compbio/data/pdb/2jdx.pdb.gz 2jdxA:# 2jdxA.55.216 read from T0506.t04.many.frag # adding 2jdxA to template set # found chain 2jdxA in template set Warning: unaligning (T0506)P63 (2jdxA)G262 because S (epsilon) conformation "forbidden" or filtered. T0506 55 :TATNIGIE 2jdxA 254 :DAADFIRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30274 # 1jy1A.55.120 read from T0506.t04.many.frag # found chain 1jy1A in training set Warning: unaligning (T0506)P63 (1jy1A)E273 because G (3-10) conformation "forbidden" or filtered. T0506 55 :TATNIGIE 1jy1A 265 :KMMLLLYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30275 # 1ursA.55.135 read from T0506.t04.many.frag # found chain 1ursA in training set Warning: unaligning (T0506)P63 (1ursA)A144 because Y (epsilon') conformation "forbidden" or filtered. T0506 55 :TATNIGIE 1ursA 136 :VPVSVQVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30276 # 1e58A.55.210 read from T0506.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0506)N58 (1e58A)V214 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1e58A)E216 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1e58A)D218 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TAT 1e58A 211 :VPL T0506 59 :I 1e58A 215 :Y T0506 61 :I 1e58A 217 :F T0506 63 :P 1e58A 219 :E Number of specific fragments extracted= 4 number of extra gaps= 3 total=30280 # 1bdfA.55.54 read from T0506.t04.many.frag # found chain 1bdfA in template set Warning: unaligning (T0506)N58 (1bdfA)E58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1bdfA)E60 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (1bdfA)G63 because T (delta_L) conformation "forbidden" or filtered. T0506 55 :TAT 1bdfA 55 :AVT T0506 59 :I 1bdfA 59 :V T0506 61 :IE 1bdfA 61 :ID Number of specific fragments extracted= 3 number of extra gaps= 3 total=30283 # 1v3eA.55.50 read from T0506.t04.many.frag # found chain 1v3eA in template set T0506 55 :TATNIGIEP 1v3eA 192 :RTPSLVIND Number of specific fragments extracted= 1 number of extra gaps= 0 total=30284 # 1t3tA.55.80 read from T0506.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)G60 (1t3tA)T78 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1t3tA)R80 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TATNI 1t3tA 73 :KLLLV T0506 61 :I 1t3tA 79 :P T0506 63 :P 1t3tA 81 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=30287 # 1xccA.55.127 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 Warning: unaligning (T0506)E62 (1xccA)S135 because P (beta_P) conformation "forbidden" or filtered. T0506 55 :TA 1xccA 128 :CR T0506 59 :IGI 1xccA 132 :FFI T0506 63 :P 1xccA 136 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=30290 # 1vl7A.56.47 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A56 (1vl7A)Y36 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 1vl7A 37 :APFVIDDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30291 # 2asfA.56.38 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A56 (2asfA)A39 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 T0506 59 :IGIEPD 2asfA 42 :FTFDPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30292 # 1iruK.56.101 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)A56 (1iruK)L102 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 1iruK 103 :LLAGYDEH Number of specific fragments extracted= 1 number of extra gaps= 1 total=30293 # 1utcA.56.152 read from T0506.t04.many.frag # found chain 1utcA in template set T0506 56 :ATNIGIEPD 1utcA 153 :IINYRTDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30294 # 3sil.56.34 read from T0506.t04.many.frag # found chain 3sil in training set T0506 56 :ATNIGIEPD 3sil 38 :IPAMCTTSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30295 # 2bjfA.56.141 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjfA)H143 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 Warning: unaligning (T0506)E62 (2bjfA)D148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (2bjfA)I149 because G (3-10) conformation "forbidden" or filtered. T0506 58 :NIGI 2bjfA 144 :WMIS T0506 64 :D 2bjfA 150 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=30297 # 1r5mA.56.151 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)G60 (1r5mA)K268 because E (beta_S) conformation "forbidden" or filtered. T0506 56 :ATNI 1r5mA 264 :IVSV T0506 61 :IEPD 1r5mA 269 :WNKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30299 # 1f8eA.56.37 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A56 (1f8eA)E119 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N58 (1f8eA)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :T 1f8eA 120 :P T0506 59 :IGIEPD 1f8eA 122 :VSCDPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=30301 # 1yge.56.431 read from T0506.t04.many.frag # found chain 1yge in training set T0506 56 :ATNIGIEPD 1yge 432 :RTILFLRED Number of specific fragments extracted= 1 number of extra gaps= 0 total=30302 # 1t3tA.56.81 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 56 :ATNIGIEPD 1t3tA 74 :LLLVTPRPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30303 # 1ryp2.56.113 read from T0506.t04.many.frag # found chain 1ryp2 in template set T0506 56 :ATNIGIEPD 1ryp2 106 :IIVAGVQSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30304 # 1khbA.56.314 read from T0506.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)E62 (1khbA)D318 because P (beta_P) conformation "forbidden" or filtered. T0506 56 :ATNIGI 1khbA 312 :IAWMKF T0506 63 :PD 1khbA 319 :AQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30306 # 1xipA.56.39 read from T0506.t04.many.frag # found chain 1xipA in template set T0506 56 :ATNIGIEPD 1xipA 39 :LQNLDISNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30307 # 1e58A.56.211 read from T0506.t04.many.frag # found chain 1e58A in training set T0506 56 :ATNIGIEPD 1e58A 212 :PLVYEFDEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30308 # 1xccA.56.128 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 Warning: unaligning (T0506)G60 (1xccA)F133 because P (beta_P) conformation "forbidden" or filtered. T0506 56 :A 1xccA 129 :R T0506 59 :I 1xccA 132 :F T0506 61 :IEPD 1xccA 134 :ISPE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30311 # 1nd4A.56.79 read from T0506.t04.many.frag # found chain 1nd4A in template set Warning: unaligning (T0506)N58 (1nd4A)D82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1nd4A)V84 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (1nd4A)A87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1nd4A)G88 because L (left) conformation "forbidden" or filtered. T0506 56 :AT 1nd4A 80 :VL T0506 59 :I 1nd4A 83 :V T0506 61 :IE 1nd4A 85 :TE Number of specific fragments extracted= 3 number of extra gaps= 3 total=30314 # 1h2wA.56.126 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)T57 (1h2wA)R128 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (1h2wA)Y130 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :A 1h2wA 127 :L T0506 58 :N 1h2wA 129 :G T0506 60 :GIEPD 1h2wA 131 :AFSED Number of specific fragments extracted= 3 number of extra gaps= 2 total=30317 2d9rA expands to /projects/compbio/data/pdb/2d9r.pdb.gz 2d9rA:Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 2d9rA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 2d9rA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2d9rA.56.24 read from T0506.t04.many.frag # adding 2d9rA to template set # found chain 2d9rA in template set T0506 56 :ATNIGIEPD 2d9rA 25 :DAIIRQVPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30318 2cvbA expands to /projects/compbio/data/pdb/2cvb.pdb.gz 2cvbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cvbA.56.117 read from T0506.t04.many.frag # adding 2cvbA to template set # found chain 2cvbA in template set Warning: unaligning (T0506)A56 (2cvbA)P118 because C (cis) conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 2cvbA 119 :EVFLFDER Number of specific fragments extracted= 1 number of extra gaps= 1 total=30319 # 1n08A.56.78 read from T0506.t04.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)E62 (1n08A)N85 because P (beta_P) conformation "forbidden" or filtered. T0506 56 :ATNIGI 1n08A 79 :VMSVGW T0506 63 :PD 1n08A 86 :PY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30321 # 2a8eA.56.71 read from T0506.t04.many.frag # found chain 2a8eA in template set Warning: unaligning (T0506)A56 (2a8eA)W72 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 2a8eA 73 :VAFANSKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30322 # 1t3yA.56.24 read from T0506.t04.many.frag # found chain 1t3yA in template set T0506 56 :ATNIGIEPD 1t3yA 26 :WVTFKYDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30323 # 1xkiA.56.33 read from T0506.t04.many.frag # found chain 1xkiA in training set Warning: unaligning (T0506)A56 (1xkiA)P38 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1xkiA)G46 because T (delta_L) conformation "forbidden" or filtered. T0506 57 :TNIGIEP 1xkiA 39 :MTLTTLE Number of specific fragments extracted= 1 number of extra gaps= 2 total=30324 # 1mj5A.56.19 read from T0506.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0506)P63 (1mj5A)G27 because S (epsilon) conformation "forbidden" or filtered. T0506 56 :ATNIGIE 1mj5A 20 :RMAYIDE T0506 64 :D 1mj5A 28 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=30326 # 1ijqA.56.110 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)G60 (1ijqA)F491 because E (beta_S) conformation "forbidden" or filtered. T0506 56 :ATNI 1ijqA 487 :RKTL T0506 61 :IEPD 1ijqA 492 :RENG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30328 # 2furA.56.48 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)A56 (2furA)P48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2furA)A52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (2furA)G55 because S (epsilon) conformation "forbidden" or filtered. T0506 57 :TNI 2furA 49 :MML T0506 61 :IE 2furA 53 :SE T0506 64 :D 2furA 56 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=30331 # 1pjxA.56.118 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N58 (1pjxA)D121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I59 (1pjxA)C122 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :AT 1pjxA 119 :CN T0506 60 :GIEPD 1pjxA 123 :AFDYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30333 # 1wvhA.56.40 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G60 (1wvhA)K1649 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1wvhA)S1651 because Y (epsilon') conformation "forbidden" or filtered. T0506 56 :ATNI 1wvhA 1645 :IVHF T0506 61 :I 1wvhA 1650 :V T0506 63 :PD 1wvhA 1652 :AQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=30336 # 1hbnC.56.82 read from T0506.t04.many.frag # found chain 1hbnC in training set Warning: unaligning (T0506)A56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hbnC)I85 Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hbnC)I85 Warning: unaligning (T0506)N58 (1hbnC)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1hbnC)Y92 because N (gamma') conformation "forbidden" or filtered. T0506 59 :IGIEP 1hbnC 87 :FTDSM Number of specific fragments extracted= 1 number of extra gaps= 2 total=30337 # 1rdqE.56.56 read from T0506.t04.many.frag # found chain 1rdqE in training set T0506 56 :ATNIGIEPD 1rdqE 57 :VMLVKHKES Number of specific fragments extracted= 1 number of extra gaps= 0 total=30338 # 1vl7A.57.48 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 57 :TNIGIEPDG 1vl7A 37 :APFVIDDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30339 # 1utcA.57.153 read from T0506.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)G60 (1utcA)R157 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNI 1utcA 154 :INY T0506 61 :IEPDG 1utcA 158 :TDAKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30341 # 2asfA.57.39 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2asfA)G41 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)I59 (2asfA)F42 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (2asfA)T48 because G (3-10) conformation "forbidden" or filtered. T0506 60 :GIEPD 2asfA 43 :TFDPK Number of specific fragments extracted= 1 number of extra gaps= 2 total=30342 # 1xccA.57.129 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xccA)L131 Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 Warning: unaligning (T0506)G60 (1xccA)F133 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 1xccA 132 :F T0506 61 :IEPDG 1xccA 134 :ISPEK Number of specific fragments extracted= 2 number of extra gaps= 2 total=30344 # 1e58A.57.212 read from T0506.t04.many.frag # found chain 1e58A in training set T0506 57 :TNIGIEPDG 1e58A 213 :LVYEFDENF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30345 # 2cvbA.57.118 read from T0506.t04.many.frag # found chain 2cvbA in template set Warning: unaligning (T0506)N58 (2cvbA)V120 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2cvbA)L122 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :T 2cvbA 119 :E T0506 59 :I 2cvbA 121 :F T0506 61 :IEPDG 2cvbA 123 :FDERR Number of specific fragments extracted= 3 number of extra gaps= 2 total=30348 # 1iruK.57.102 read from T0506.t04.many.frag # found chain 1iruK in template set T0506 57 :TNIGIEPDG 1iruK 103 :LLAGYDEHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30349 # 2bjfA.57.142 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)T57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjfA)H143 Warning: unaligning (T0506)E62 (2bjfA)D148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (2bjfA)I149 because G (3-10) conformation "forbidden" or filtered. T0506 58 :NIGI 2bjfA 144 :WMIS T0506 64 :DG 2bjfA 150 :TG Number of specific fragments extracted= 2 number of extra gaps= 2 total=30351 # 1xkiA.57.34 read from T0506.t04.many.frag # found chain 1xkiA in training set Warning: unaligning (T0506)N58 (1xkiA)T40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1xkiA)G46 because T (delta_L) conformation "forbidden" or filtered. T0506 57 :T 1xkiA 39 :M T0506 59 :IGIEP 1xkiA 41 :LTTLE T0506 65 :G 1xkiA 47 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=30354 # 3sil.57.35 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)G60 (3sil)C42 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNI 3sil 39 :PAM T0506 61 :IEPDG 3sil 43 :TTSKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30356 # 1f8eA.57.38 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)N58 (1f8eA)Y121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1f8eA)E128 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :T 1f8eA 120 :P T0506 59 :IGIEPD 1f8eA 122 :VSCDPD Number of specific fragments extracted= 2 number of extra gaps= 2 total=30358 # 1uteA.57.224 read from T0506.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)E62 (1uteA)D230 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNIGI 1uteA 225 :LQYLQ T0506 63 :PDG 1uteA 231 :ENG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30360 # 1khbA.57.315 read from T0506.t04.many.frag # found chain 1khbA in template set T0506 57 :TNIGIEPDG 1khbA 313 :AWMKFDAQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30361 # 1r5mA.57.152 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)E62 (1r5mA)N270 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNIGI 1r5mA 265 :VSVKW T0506 63 :PDG 1r5mA 271 :KDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30363 # 1wlgA.57.26 read from T0506.t04.many.frag # found chain 1wlgA in training set Warning: unaligning (T0506)G60 (1wlgA)K100 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNI 1wlgA 97 :GQF T0506 61 :IEPDG 1wlgA 101 :LDENR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30365 1yaxA expands to /projects/compbio/data/pdb/1yax.pdb.gz 1yaxA:# 1yaxA.57.41 read from T0506.t04.many.frag # adding 1yaxA to template set # found chain 1yaxA in template set Warning: unaligning (T0506)G60 (1yaxA)I88 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNI 1yaxA 85 :MTL T0506 61 :IEPDG 1yaxA 89 :YDETG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30367 # 1ijqA.57.111 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)G65 (1ijqA)S496 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNIGIEPD 1ijqA 488 :KTLFRENG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30368 # 1yge.57.432 read from T0506.t04.many.frag # found chain 1yge in training set T0506 57 :TNIGIEPDG 1yge 433 :TILFLREDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30369 # 2a9dA.57.146 read from T0506.t04.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)N58 (2a9dA)G242 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2a9dA)D244 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :T 2a9dA 241 :E T0506 59 :I 2a9dA 243 :L T0506 61 :IEPDG 2a9dA 245 :ADPGG Number of specific fragments extracted= 3 number of extra gaps= 2 total=30372 1thqA expands to /projects/compbio/data/pdb/1thq.pdb.gz 1thqA:# 1thqA.57.56 read from T0506.t04.many.frag # adding 1thqA to template set # found chain 1thqA in template set T0506 57 :TNIGIEPDG 1thqA 56 :GLSRWDEKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30373 # 1ryp2.57.114 read from T0506.t04.many.frag # found chain 1ryp2 in template set T0506 57 :TNIGIEPDG 1ryp2 107 :IVAGVQSNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30374 # 1rdqE.57.57 read from T0506.t04.many.frag # found chain 1rdqE in training set T0506 57 :TNIGIEPDG 1rdqE 58 :MLVKHKESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30375 # 1kt6A.57.42 read from T0506.t04.many.frag # found chain 1kt6A in training set T0506 57 :TNIGIEPDG 1kt6A 43 :AEFSVDENG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30376 # 1xipA.57.40 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)N58 (1xipA)N41 because G (3-10) conformation "forbidden" or filtered. T0506 57 :T 1xipA 40 :Q T0506 59 :IGIEPDG 1xipA 42 :LDISNSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30378 # 1t3tA.57.82 read from T0506.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)T57 (1t3tA)L75 because D (zeta) conformation "forbidden" or filtered. T0506 58 :NIGIEPDG 1t3tA 76 :LVTPRPGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30379 # 1h2wA.57.127 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)N58 (1h2wA)G129 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (1h2wA)A131 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :T 1h2wA 128 :R T0506 59 :I 1h2wA 130 :Y T0506 61 :IEPDG 1h2wA 132 :FSEDG Number of specific fragments extracted= 3 number of extra gaps= 2 total=30382 # 1kcfA.57.54 read from T0506.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)E62 (1kcfA)N60 because P (beta_P) conformation "forbidden" or filtered. T0506 57 :TNIGI 1kcfA 55 :CFASQ T0506 63 :PDG 1kcfA 61 :EDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30384 # 1zpsA.57.79 read from T0506.t04.many.frag # found chain 1zpsA in template set Warning: unaligning (T0506)N58 (1zpsA)D81 because Y (epsilon') conformation "forbidden" or filtered. T0506 57 :T 1zpsA 80 :K T0506 59 :IGIEPDG 1zpsA 82 :VLVDCDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30386 1u2cA expands to /projects/compbio/data/pdb/1u2c.pdb.gz 1u2cA:# 1u2cA.57.46 read from T0506.t04.many.frag # adding 1u2cA to template set # found chain 1u2cA in template set Warning: unaligning (T0506)G60 (1u2cA)H107 because E (beta_S) conformation "forbidden" or filtered. T0506 57 :TNI 1u2cA 104 :SWL T0506 61 :IEPDG 1u2cA 108 :WDPHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30388 # 1ojrA.57.90 read from T0506.t04.many.frag # found chain 1ojrA in training set T0506 57 :TNIGIEPDG 1ojrA 91 :GIVKVDSDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30389 # 1vl7A.58.49 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)E62 (1vl7A)D42 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NIGI 1vl7A 38 :PFVI T0506 63 :PDGT 1vl7A 43 :DAKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30391 # 2cvbA.58.119 read from T0506.t04.many.frag # found chain 2cvbA in template set Warning: unaligning (T0506)G60 (2cvbA)L122 because E (beta_S) conformation "forbidden" or filtered. T0506 58 :NI 2cvbA 120 :VF T0506 61 :IEPDGT 2cvbA 123 :FDERRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30393 # 1utcA.58.154 read from T0506.t04.many.frag # found chain 1utcA in template set T0506 58 :NIGIEPDGT 1utcA 155 :NYRTDAKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30394 # 1e58A.58.213 read from T0506.t04.many.frag # found chain 1e58A in training set Warning: unaligning (T0506)G60 (1e58A)E216 because E (beta_S) conformation "forbidden" or filtered. T0506 58 :NI 1e58A 214 :VY T0506 61 :IEPDGT 1e58A 217 :FDENFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30396 # 1uteA.58.225 read from T0506.t04.many.frag # found chain 1uteA in training set Warning: unaligning (T0506)N58 (1uteA)Q226 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1uteA 227 :YLQDENGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30397 # 1xccA.58.130 read from T0506.t04.many.frag # found chain 1xccA in template set Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xccA)L131 Warning: unaligning (T0506)G60 (1xccA)F133 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1xccA)S135 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 1xccA 132 :F T0506 61 :I 1xccA 134 :I T0506 63 :PDGT 1xccA 136 :PEKK Number of specific fragments extracted= 3 number of extra gaps= 3 total=30400 # 1wlgA.58.27 read from T0506.t04.many.frag # found chain 1wlgA in training set T0506 58 :NIGIEPDGT 1wlgA 98 :QFKLDENRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30401 # 2asfA.58.40 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)N58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2asfA)G41 Warning: unaligning (T0506)G60 (2asfA)T43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2asfA)D45 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (2asfA)T48 because G (3-10) conformation "forbidden" or filtered. T0506 59 :I 2asfA 42 :F T0506 61 :I 2asfA 44 :F T0506 63 :PD 2asfA 46 :PK T0506 66 :T 2asfA 49 :H Number of specific fragments extracted= 4 number of extra gaps= 4 total=30405 # 1r5mA.58.153 read from T0506.t04.many.frag # found chain 1r5mA in training set T0506 58 :NIGIEPDGT 1r5mA 266 :SVKWNKDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30406 # 1khbA.58.316 read from T0506.t04.many.frag # found chain 1khbA in template set T0506 58 :NIGIEPDGT 1khbA 314 :WMKFDAQGH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30407 # 1yaxA.58.42 read from T0506.t04.many.frag # found chain 1yaxA in template set Warning: unaligning (T0506)E62 (1yaxA)D90 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NIGI 1yaxA 86 :TLIY T0506 63 :PDGT 1yaxA 91 :ETGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30409 # 1vyrA.58.130 read from T0506.t04.many.frag # found chain 1vyrA in training set T0506 58 :NIGIEPDGT 1vyrA 131 :TSLRDENGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30410 # 1xkiA.58.35 read from T0506.t04.many.frag # found chain 1xkiA in training set Warning: unaligning (T0506)G60 (1xkiA)T42 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1xkiA)G46 because T (delta_L) conformation "forbidden" or filtered. T0506 58 :NI 1xkiA 40 :TL T0506 61 :IEP 1xkiA 43 :TLE T0506 65 :GT 1xkiA 47 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=30413 # 1kt6A.58.43 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)G60 (1kt6A)S46 because E (beta_S) conformation "forbidden" or filtered. T0506 58 :NI 1kt6A 44 :EF T0506 61 :IEPDGT 1kt6A 47 :VDENGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=30415 # 1thqA.58.57 read from T0506.t04.many.frag # found chain 1thqA in template set Warning: unaligning (T0506)G60 (1thqA)R59 because Y (epsilon') conformation "forbidden" or filtered. T0506 58 :NI 1thqA 57 :LS T0506 61 :IEPDGT 1thqA 60 :WDEKGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30417 2cwsA expands to /projects/compbio/data/pdb/2cws.pdb.gz 2cwsA:Skipped atom 168, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 170, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 172, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 174, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 2cwsA Skipped atom 482, because occupancy 0.500 <= existing 0.500 in 2cwsA Skipped atom 484, because occupancy 0.500 <= existing 0.500 in 2cwsA Skipped atom 486, because occupancy 0.500 <= existing 0.500 in 2cwsA Skipped atom 488, because occupancy 0.500 <= existing 0.500 in 2cwsA Skipped atom 490, because occupancy 0.500 <= existing 0.500 in 2cwsA Skipped atom 721, because occupancy 0.460 <= existing 0.540 in 2cwsA Skipped atom 723, because occupancy 0.460 <= existing 0.540 in 2cwsA Skipped atom 725, because occupancy 0.460 <= existing 0.540 in 2cwsA Skipped atom 727, because occupancy 0.460 <= existing 0.540 in 2cwsA Skipped atom 729, because occupancy 0.460 <= existing 0.540 in 2cwsA Skipped atom 755, because occupancy 0.270 <= existing 0.730 in 2cwsA Skipped atom 757, because occupancy 0.270 <= existing 0.730 in 2cwsA Skipped atom 759, because occupancy 0.270 <= existing 0.730 in 2cwsA Skipped atom 761, because occupancy 0.270 <= existing 0.730 in 2cwsA Skipped atom 763, because occupancy 0.270 <= existing 0.730 in 2cwsA Skipped atom 869, because occupancy 0.110 <= existing 0.890 in 2cwsA Skipped atom 871, because occupancy 0.110 <= existing 0.890 in 2cwsA Skipped atom 873, because occupancy 0.110 <= existing 0.890 in 2cwsA Skipped atom 875, because occupancy 0.110 <= existing 0.890 in 2cwsA Skipped atom 958, because occupancy 0.370 <= existing 0.630 in 2cwsA Skipped atom 960, because occupancy 0.370 <= existing 0.630 in 2cwsA Skipped atom 962, because occupancy 0.370 <= existing 0.630 in 2cwsA Skipped atom 964, because occupancy 0.370 <= existing 0.630 in 2cwsA Skipped atom 966, because occupancy 0.370 <= existing 0.630 in 2cwsA Skipped atom 968, because occupancy 0.370 <= existing 0.630 in 2cwsA Skipped atom 970, because occupancy 0.370 <= existing 0.630 in 2cwsA Skipped atom 1149, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1151, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1153, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1155, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1157, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1159, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1161, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1164, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1166, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1168, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1170, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1172, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1174, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1176, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1178, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1180, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1182, because occupancy 0.380 <= existing 0.620 in 2cwsA Skipped atom 1243, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1245, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1247, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1249, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1251, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1253, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1255, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1257, because occupancy 0.200 <= existing 0.800 in 2cwsA Skipped atom 1314, because occupancy 0.390 <= existing 0.610 in 2cwsA Skipped atom 1316, because occupancy 0.390 <= existing 0.610 in 2cwsA Skipped atom 1572, because occupancy 0.280 <= existing 0.720 in 2cwsA Skipped atom 1574, because occupancy 0.280 <= existing 0.720 in 2cwsA Skipped atom 1576, because occupancy 0.280 <= existing 0.720 in 2cwsA Skipped atom 1578, because occupancy 0.280 <= existing 0.720 in 2cwsA Skipped atom 1584, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 1586, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 1588, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 1590, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 1592, because occupancy 0.300 <= existing 0.700 in 2cwsA Skipped atom 1710, because occupancy 0.420 <= existing 0.580 in 2cwsA Skipped atom 1712, because occupancy 0.420 <= existing 0.580 in 2cwsA # 2cwsA.58.39 read from T0506.t04.many.frag # adding 2cwsA to template set # found chain 2cwsA in template set Warning: unaligning (T0506)N58 (2cwsA)Y119 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2cwsA)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0506 59 :I 2cwsA 120 :F T0506 61 :IEPDGT 2cwsA 122 :TDTDGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30419 # 1nytA.58.86 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)G60 (1nytA)M89 because E (beta_S) conformation "forbidden" or filtered. T0506 58 :NI 1nytA 87 :TL T0506 61 :IEPDGT 1nytA 90 :RLEDGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30421 # 2bjfA.58.143 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)G60 (2bjfA)I146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2bjfA)D148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (2bjfA)I149 because G (3-10) conformation "forbidden" or filtered. T0506 58 :NI 2bjfA 144 :WM T0506 61 :I 2bjfA 147 :S T0506 64 :DGT 2bjfA 150 :TGK Number of specific fragments extracted= 3 number of extra gaps= 2 total=30424 # 1r0pA.58.95 read from T0506.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)N58 (1r0pA)G1144 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1r0pA)E1150 because L (left) conformation "forbidden" or filtered. T0506 59 :IGIEP 1r0pA 1145 :ICLRS T0506 65 :GT 1r0pA 1151 :GS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30426 # 2a9dA.58.147 read from T0506.t04.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)N58 (2a9dA)G242 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G60 (2a9dA)D244 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 2a9dA 243 :L T0506 61 :IEPDGT 2a9dA 245 :ADPGGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30428 # 3sil.58.36 read from T0506.t04.many.frag # found chain 3sil in training set T0506 58 :NIGIEPDGT 3sil 40 :AMCTTSKGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30429 # 1kcfA.58.55 read from T0506.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)N58 (1kcfA)F56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1kcfA)N60 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :IGI 1kcfA 57 :ASQ T0506 63 :PDGT 1kcfA 61 :EDSK Number of specific fragments extracted= 2 number of extra gaps= 2 total=30431 # 1ijqA.58.112 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)G60 (1ijqA)F491 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1ijqA)G495 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1ijqA)S496 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NI 1ijqA 489 :TL T0506 61 :IEP 1ijqA 492 :REN T0506 66 :T 1ijqA 497 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=30434 # 1h2wA.58.128 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)N58 (1h2wA)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1h2wA 130 :YAFSEDGE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30435 # 1xipA.58.41 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)G60 (1xipA)D43 because E (beta_S) conformation "forbidden" or filtered. T0506 58 :NI 1xipA 41 :NL T0506 61 :IEPDGT 1xipA 44 :ISNSKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30437 # 1ojrA.58.91 read from T0506.t04.many.frag # found chain 1ojrA in training set Warning: unaligning (T0506)G60 (1ojrA)K94 because E (beta_S) conformation "forbidden" or filtered. T0506 58 :NI 1ojrA 92 :IV T0506 61 :IEPDGT 1ojrA 95 :VDSDGA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30439 # 1u2cA.58.47 read from T0506.t04.many.frag # found chain 1u2cA in template set Warning: unaligning (T0506)N58 (1u2cA)W105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1u2cA)S112 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T66 (1u2cA)H113 because L (left) conformation "forbidden" or filtered. T0506 59 :IGIEPD 1u2cA 106 :LHWDPH Number of specific fragments extracted= 1 number of extra gaps= 2 total=30440 # 1zpsA.58.80 read from T0506.t04.many.frag # found chain 1zpsA in template set Warning: unaligning (T0506)G60 (1zpsA)L83 because P (beta_P) conformation "forbidden" or filtered. T0506 58 :NI 1zpsA 81 :DV T0506 61 :IEPDGT 1zpsA 84 :VDCDGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30442 # 1vzyA.58.159 read from T0506.t04.many.frag # found chain 1vzyA in template set T0506 58 :NIGIEPDGT 1vzyA 160 :GVLVNPDNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30443 # 1iruK.58.103 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)T66 (1iruK)G112 because S (epsilon) conformation "forbidden" or filtered. T0506 58 :NIGIEPDG 1iruK 104 :LAGYDEHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=30444 # 1flmA.59.35 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)D64 (1flmA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1flmA)I44 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEP 1flmA 36 :LKVLD T0506 65 :GT 1flmA 42 :NR Number of specific fragments extracted= 2 number of extra gaps= 2 total=30446 # 1nytA.59.87 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1nytA 88 :LMRLEDGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30447 # 1xkiA.59.36 read from T0506.t04.many.frag # found chain 1xkiA in training set Warning: unaligning (T0506)P67 (1xkiA)L49 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1xkiA 41 :LTTLEGGN Number of specific fragments extracted= 1 number of extra gaps= 1 total=30448 # 1vl7A.59.50 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)E62 (1vl7A)D42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGI 1vl7A 39 :FVI T0506 63 :PDGT 1vl7A 43 :DAKN Number of specific fragments extracted= 2 number of extra gaps= 2 total=30450 2fkcA expands to /projects/compbio/data/pdb/2fkc.pdb.gz 2fkcA:Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 902, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 904, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 914, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1830, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1832, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1834, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1836, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1838, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1840, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1842, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1844, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1846, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1848, because occupancy 0.500 <= existing 0.500 in 2fkcA Skipped atom 1850, because occupancy 0.500 <= existing 0.500 in 2fkcA # 2fkcA.59.204 read from T0506.t04.many.frag # adding 2fkcA to template set # found chain 2fkcA in template set Warning: unaligning (T0506)P67 (2fkcA)I213 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 2fkcA 205 :ISLSPRGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30451 # 1kt6A.59.44 read from T0506.t04.many.frag # found chain 1kt6A in training set T0506 59 :IGIEPDGTP 1kt6A 45 :FSVDENGHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=30452 # 1khbA.59.317 read from T0506.t04.many.frag # found chain 1khbA in template set T0506 59 :IGIEPDGTP 1khbA 315 :MKFDAQGHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30453 # 2a9dA.59.148 read from T0506.t04.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)G60 (2a9dA)D244 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 2a9dA 243 :L T0506 61 :IEPDGTP 2a9dA 245 :ADPGGAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30455 # 2cwsA.59.40 read from T0506.t04.many.frag # found chain 2cwsA in template set Warning: unaligning (T0506)G60 (2cwsA)Y121 because Y (epsilon') conformation "forbidden" or filtered. T0506 59 :I 2cwsA 120 :F T0506 61 :IEPDGTP 2cwsA 122 :TDTDGAM Number of specific fragments extracted= 2 number of extra gaps= 1 total=30457 # 1kcfA.59.56 read from T0506.t04.many.frag # found chain 1kcfA in template set Warning: unaligning (T0506)G60 (1kcfA)S58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1kcfA)N60 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :I 1kcfA 57 :A T0506 61 :I 1kcfA 59 :Q T0506 63 :PDGTP 1kcfA 61 :EDSKV Number of specific fragments extracted= 3 number of extra gaps= 2 total=30460 # 1r5mA.59.154 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1r5mA 267 :VKWNKDGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30461 # 1gxrA.59.102 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)G60 (1gxrA)K537 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1gxrA)L539 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1gxrA 536 :C T0506 61 :I 1gxrA 538 :L T0506 63 :PDGT 1gxrA 540 :PDGC Number of specific fragments extracted= 3 number of extra gaps= 3 total=30464 # 1ylhA.59.254 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1ylhA 235 :ANVGKDGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30465 # 1utcA.59.155 read from T0506.t04.many.frag # found chain 1utcA in template set Warning: unaligning (T0506)G60 (1utcA)R157 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1utcA)W164 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1utcA 156 :Y T0506 61 :IEPDGT 1utcA 158 :TDAKQK Number of specific fragments extracted= 2 number of extra gaps= 2 total=30467 # 1thqA.59.58 read from T0506.t04.many.frag # found chain 1thqA in template set Warning: unaligning (T0506)E62 (1thqA)D61 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :IGI 1thqA 58 :SRW T0506 63 :PDGTP 1thqA 62 :EKGNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=30469 # 2cvbA.59.120 read from T0506.t04.many.frag # found chain 2cvbA in template set T0506 59 :IGIEPDGTP 2cvbA 121 :FLFDERRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30470 # 1e58A.59.214 read from T0506.t04.many.frag # found chain 1e58A in training set T0506 59 :IGIEPDGTP 1e58A 215 :YEFDENFKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30471 # 1uteA.59.226 read from T0506.t04.many.frag # found chain 1uteA in training set T0506 59 :IGIEPDGTP 1uteA 227 :YLQDENGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30472 # 1ynfA.59.319 read from T0506.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1ynfA 309 :LLSRDDGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30473 # 1ga6A.59.221 read from T0506.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0506)I59 (1ga6A)E222 because G (3-10) conformation "forbidden" or filtered. T0506 60 :GIEPDGTP 1ga6A 223 :GLDSNGKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30474 1u5kA expands to /projects/compbio/data/pdb/1u5k.pdb.gz 1u5kA:# 1u5kA.59.14 read from T0506.t04.many.frag # adding 1u5kA to template set # found chain 1u5kA in template set Warning: unaligning (T0506)E62 (1u5kA)T18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1u5kA)I23 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGI 1u5kA 15 :RRV T0506 63 :PDGT 1u5kA 19 :PAGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=30476 # 1o2dA.59.160 read from T0506.t04.many.frag # found chain 1o2dA in training set Warning: unaligning (T0506)E62 (1o2dA)D152 because P (beta_P) conformation "forbidden" or filtered. T0506 59 :IGI 1o2dA 149 :ILT T0506 63 :PDGTP 1o2dA 153 :PEGNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30478 # 1v04A.59.118 read from T0506.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0506)P67 (1v04A)V127 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1v04A 119 :TFIDDDNT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30479 # 1pbyB.59.38 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)G60 (1pbyB)M40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1pbyB)G44 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1pbyB 39 :P T0506 61 :IEP 1pbyB 41 :VAP T0506 65 :GT 1pbyB 45 :GR Number of specific fragments extracted= 3 number of extra gaps= 3 total=30482 # 3sil.59.37 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 3sil 41 :MCTTSKGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30483 # 1wlgA.59.28 read from T0506.t04.many.frag # found chain 1wlgA in training set Warning: unaligning (T0506)G60 (1wlgA)K100 because E (beta_S) conformation "forbidden" or filtered. T0506 59 :I 1wlgA 99 :F T0506 61 :IEPDGTP 1wlgA 101 :LDENRNL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30485 # 1vzyA.59.160 read from T0506.t04.many.frag # found chain 1vzyA in template set T0506 59 :IGIEPDGTP 1vzyA 161 :VLVNPDNTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30486 # 1a62.59.54 read from T0506.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0506)P67 (1a62)G63 because Y (epsilon') conformation "forbidden" or filtered. T0506 59 :IGIEPDGT 1a62 55 :LEILQDGF Number of specific fragments extracted= 1 number of extra gaps= 1 total=30487 # 1yaxA.59.43 read from T0506.t04.many.frag # found chain 1yaxA in template set T0506 59 :IGIEPDGTP 1yaxA 87 :LIYDETGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30488 # 1ijqA.59.113 read from T0506.t04.many.frag # found chain 1ijqA in training set T0506 59 :IGIEPDGTP 1ijqA 490 :LFRENGSKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30489 # 1pbyB.60.39 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)E62 (1pbyB)A42 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 1pbyB 40 :MV T0506 63 :PDGT 1pbyB 43 :PGGR T0506 68 :F 1pbyB 48 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=30492 # 1r5mA.60.155 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1r5mA 268 :KWNKDGT T0506 68 :F 1r5mA 276 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=30494 # 1nytA.60.88 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)E62 (1nytA)L91 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 1nytA 89 :MR T0506 63 :PDGT 1nytA 92 :EDGR T0506 68 :F 1nytA 97 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=30497 # 2a9dA.60.149 read from T0506.t04.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)G60 (2a9dA)D244 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2a9dA)D246 because P (beta_P) conformation "forbidden" or filtered. T0506 61 :I 2a9dA 245 :A T0506 63 :PDGTPF 2a9dA 247 :PGGAPY Number of specific fragments extracted= 2 number of extra gaps= 2 total=30499 # 1kt6A.60.45 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)G60 (1kt6A)S46 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGTPF 1kt6A 47 :VDENGHMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30500 # 2fkcA.60.205 read from T0506.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0506)G60 (2fkcA)S206 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2fkcA)I213 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 2fkcA 207 :LSPRGS T0506 68 :F 2fkcA 214 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=30502 # 2cwsA.60.41 read from T0506.t04.many.frag # found chain 2cwsA in template set T0506 60 :GIEPDGTPF 2cwsA 121 :YTDTDGAMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30503 # 1khbA.60.318 read from T0506.t04.many.frag # found chain 1khbA in template set T0506 60 :GIEPDGTPF 1khbA 316 :KFDAQGHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30504 # 1gxrA.60.103 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1gxrA 537 :KLLPDGC T0506 68 :F 1gxrA 545 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=30506 # 1thqA.60.59 read from T0506.t04.many.frag # found chain 1thqA in template set T0506 60 :GIEPDGTPF 1thqA 59 :RWDEKGNWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=30507 # 1ga6A.60.222 read from T0506.t04.many.frag # found chain 1ga6A in training set T0506 60 :GIEPDGTPF 1ga6A 223 :GLDSNGKLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=30508 # 1ylhA.60.255 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)G60 (1ylhA)N236 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1ylhA 237 :VGKDGD T0506 68 :F 1ylhA 244 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=30510 # 1ynfA.60.320 read from T0506.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)G60 (1ynfA)L310 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1ynfA)R312 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 1ynfA 311 :S T0506 63 :PDGT 1ynfA 313 :DDGS T0506 68 :F 1ynfA 318 :M Number of specific fragments extracted= 3 number of extra gaps= 3 total=30513 # 1o2dA.60.161 read from T0506.t04.many.frag # found chain 1o2dA in training set T0506 60 :GIEPDGTPF 1o2dA 150 :LTDPEGNKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=30514 # 1xkiA.60.37 read from T0506.t04.many.frag # found chain 1xkiA in training set Warning: unaligning (T0506)D64 (1xkiA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1xkiA)L49 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEP 1xkiA 42 :TTLE T0506 65 :GT 1xkiA 47 :GN T0506 68 :F 1xkiA 50 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=30517 # 1kcfA.60.57 read from T0506.t04.many.frag # found chain 1kcfA in template set T0506 60 :GIEPDGTPF 1kcfA 58 :SQNEDSKVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30518 # 1vl7A.60.51 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 1vl7A 40 :VIDDAKN T0506 68 :F 1vl7A 48 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=30520 # 1vzyA.60.161 read from T0506.t04.many.frag # found chain 1vzyA in template set Warning: unaligning (T0506)G60 (1vzyA)L162 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGTPF 1vzyA 163 :VNPDNTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30521 # 2bjfA.60.145 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)G60 (2bjfA)I146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (2bjfA)D148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (2bjfA)I149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2bjfA)S153 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 2bjfA 147 :S T0506 64 :DGT 2bjfA 150 :TGK T0506 68 :F 2bjfA 154 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=30524 # 1hxn.60.23 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)G60 (1hxn)V239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1hxn 240 :SDNHGA T0506 68 :F 1hxn 247 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=30526 # 1y08A.60.253 read from T0506.t04.many.frag # found chain 1y08A in template set T0506 60 :GIEPDGTPF 1y08A 270 :DFDSNGNLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30527 # 1u5kA.60.15 read from T0506.t04.many.frag # found chain 1u5kA in template set Warning: unaligning (T0506)E62 (1u5kA)T18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1u5kA)I23 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 1u5kA 16 :RV T0506 63 :PDGT 1u5kA 19 :PAGD T0506 68 :F 1u5kA 24 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=30530 # 1flmA.60.36 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G60 (1flmA)K37 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1flmA)G41 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1flmA)I44 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEP 1flmA 38 :VLD T0506 65 :GT 1flmA 42 :NR T0506 68 :F 1flmA 45 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=30533 # 1v04A.60.119 read from T0506.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0506)E62 (1v04A)D122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1v04A)V127 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 1v04A 120 :FI T0506 63 :PDGT 1v04A 123 :DDNT T0506 68 :F 1v04A 128 :Y Number of specific fragments extracted= 3 number of extra gaps= 2 total=30536 # 3sil.60.38 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 3sil 42 :CTTSKGT T0506 68 :F 3sil 50 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=30538 # 1tl2A.60.46 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)G60 (1tl2A)F47 because Y (epsilon') conformation "forbidden" or filtered. T0506 61 :IEPDGTPF 1tl2A 48 :LSPGGELY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30539 # 2bmoA.60.64 read from T0506.t04.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)P67 (2bmoA)V72 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GIEPDGT 2bmoA 65 :SRQNDGS T0506 68 :F 2bmoA 73 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=30541 # 1dd9A.60.112 read from T0506.t04.many.frag # found chain 1dd9A in training set Warning: unaligning (T0506)G60 (1dd9A)I208 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E62 (1dd9A)D210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)F68 (1dd9A)I216 because G (3-10) conformation "forbidden" or filtered. T0506 61 :I 1dd9A 209 :R T0506 63 :PDGTP 1dd9A 211 :KRGRV Number of specific fragments extracted= 2 number of extra gaps= 3 total=30543 # 1oygA.60.141 read from T0506.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0506)G60 (1oygA)T168 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGTPF 1oygA 169 :FTSDGKIR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30544 # 2aneA.60.87 read from T0506.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0506)E62 (2aneA)L83 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2aneA)V88 because E (beta_S) conformation "forbidden" or filtered. T0506 60 :GI 2aneA 81 :LK T0506 63 :PDGT 2aneA 84 :PDGT T0506 68 :F 2aneA 89 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=30547 # 1nytA.61.89 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1nytA 90 :RLEDGR T0506 68 :FF 1nytA 97 :LG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30549 # 1ga6A.61.223 read from T0506.t04.many.frag # found chain 1ga6A in training set T0506 61 :IEPDGTPFF 1ga6A 224 :LDSNGKLWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30550 # 2cwsA.61.42 read from T0506.t04.many.frag # found chain 2cwsA in template set T0506 61 :IEPDGTPFF 2cwsA 122 :TDTDGAMTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30551 # 1ylhA.61.256 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1ylhA 237 :VGKDGD T0506 68 :FF 1ylhA 244 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30553 # 1ynfA.61.321 read from T0506.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1ynfA 311 :SRDDGS T0506 68 :FF 1ynfA 318 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=30555 # 1tl2A.61.47 read from T0506.t04.many.frag # found chain 1tl2A in template set T0506 61 :IEPDGTPFF 1tl2A 48 :LSPGGELYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30556 # 1kt6A.61.46 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)E62 (1kt6A)D48 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)F69 (1kt6A)A55 because Y (epsilon') conformation "forbidden" or filtered. T0506 61 :I 1kt6A 47 :V T0506 63 :PDGTPF 1kt6A 49 :ENGHMS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30558 # 1gxrA.61.104 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1gxrA 538 :LLPDGC T0506 68 :FF 1gxrA 545 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30560 # 2a9dA.61.150 read from T0506.t04.many.frag # found chain 2a9dA in template set T0506 61 :IEPDGTPFF 2a9dA 245 :ADPGGAPYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30561 # 1khbA.61.319 read from T0506.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)F69 because of BadResidue code BAD_PEPTIDE in next template residue (1khbA)I326 T0506 61 :IEPDGTPF 1khbA 317 :FDAQGHLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=30562 # 1xkiA.61.38 read from T0506.t04.many.frag # found chain 1xkiA in training set Warning: unaligning (T0506)D64 (1xkiA)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1xkiA)L49 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEP 1xkiA 43 :TLE T0506 65 :GT 1xkiA 47 :GN T0506 68 :FF 1xkiA 50 :EA Number of specific fragments extracted= 3 number of extra gaps= 2 total=30565 # 2fkcA.61.206 read from T0506.t04.many.frag # found chain 2fkcA in template set Warning: unaligning (T0506)P67 (2fkcA)I213 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 2fkcA 207 :LSPRGS T0506 68 :FF 2fkcA 214 :NF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30567 # 1kcfA.61.58 read from T0506.t04.many.frag # found chain 1kcfA in template set T0506 61 :IEPDGTPFF 1kcfA 59 :QNEDSKVII Number of specific fragments extracted= 1 number of extra gaps= 0 total=30568 # 1pbyB.61.40 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1pbyB 41 :VAPGGR T0506 68 :FF 1pbyB 48 :AY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30570 # 1thqA.61.60 read from T0506.t04.many.frag # found chain 1thqA in template set T0506 61 :IEPDGTPFF 1thqA 60 :WDEKGNWHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30571 # 1hxn.61.24 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)E62 (1hxn)D241 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 1hxn 240 :S T0506 63 :PDGT 1hxn 242 :NHGA T0506 68 :FF 1hxn 247 :YV Number of specific fragments extracted= 3 number of extra gaps= 2 total=30574 # 1r5mA.61.156 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)E62 (1r5mA)N270 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 1r5mA 269 :W T0506 63 :PDGT 1r5mA 271 :KDGT T0506 68 :FF 1r5mA 276 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=30577 # 1o2dA.61.162 read from T0506.t04.many.frag # found chain 1o2dA in training set T0506 61 :IEPDGTPFF 1o2dA 151 :TDPEGNKRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30578 # 2bmoA.61.65 read from T0506.t04.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)E62 (2bmoA)Q67 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2bmoA)V72 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :I 2bmoA 66 :R T0506 63 :PDGT 2bmoA 68 :NDGS T0506 68 :FF 2bmoA 73 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=30581 # 1flmA.61.37 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)P67 (1flmA)I44 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1flmA 38 :VLDGNR T0506 68 :FF 1flmA 45 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30583 # 3sil.61.39 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 3sil 43 :TTSKGT T0506 68 :FF 3sil 50 :VV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30585 # 1w0pA.61.124 read from T0506.t04.many.frag # found chain 1w0pA in training set T0506 61 :IEPDGTPFF 1w0pA 125 :LDSSGNLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30586 # 1t4wA.61.22 read from T0506.t04.many.frag # found chain 1t4wA in template set T0506 61 :IEPDGTPFF 1t4wA 245 :ISSEHEKYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30587 # 1vl7A.61.52 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1vl7A 41 :IDDAKN T0506 68 :FF 1vl7A 48 :YI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30589 # 1k3iA.61.249 read from T0506.t04.many.frag # found chain 1k3iA in training set T0506 61 :IEPDGTPFF 1k3iA 233 :MDGNGQIVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30590 # 1t1uA.61.320 read from T0506.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D325 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D325 Warning: unaligning (T0506)G65 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)G326 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)T327 Warning: unaligning (T0506)P67 (1t1uA)C328 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IE 1t1uA 322 :VG T0506 68 :FF 1t1uA 329 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30592 # 2bjfA.61.146 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)P63 (2bjfA)I149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2bjfA)S153 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IE 2bjfA 147 :SD T0506 64 :DGT 2bjfA 150 :TGK T0506 68 :FF 2bjfA 154 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=30595 1je5A expands to /projects/compbio/data/pdb/1je5.pdb.gz 1je5A:# 1je5A.61.97 read from T0506.t04.many.frag # adding 1je5A to template set # found chain 1je5A in template set Warning: unaligning (T0506)P63 (1je5A)G100 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1je5A)T104 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IE 1je5A 98 :DN T0506 64 :DGT 1je5A 101 :DGT T0506 68 :FF 1je5A 105 :TF Number of specific fragments extracted= 3 number of extra gaps= 2 total=30598 # 1dd9A.61.113 read from T0506.t04.many.frag # found chain 1dd9A in training set T0506 61 :IEPDGTPFF 1dd9A 209 :RDKRGRVIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30599 # 1y0yA.61.78 read from T0506.t04.many.frag # found chain 1y0yA in training set Warning: unaligning (T0506)P67 (1y0yA)L85 because E (beta_S) conformation "forbidden" or filtered. T0506 61 :IEPDGT 1y0yA 79 :IEKNGF T0506 68 :FF 1y0yA 86 :RV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30601 # 1k3iA.62.250 read from T0506.t04.many.frag # found chain 1k3iA in training set T0506 62 :EPDGTPFFF 1k3iA 234 :DGNGQIVVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30602 # 3sil.62.40 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)E62 (3sil)T44 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 3sil 45 :SKGT T0506 68 :FFF 3sil 50 :VVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=30604 # 1ga6A.62.224 read from T0506.t04.many.frag # found chain 1ga6A in training set T0506 62 :EPDGTPFFF 1ga6A 225 :DSNGKLWAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30605 # 1nytA.62.90 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1nytA 91 :LEDGR T0506 68 :FFF 1nytA 97 :LGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30607 # 1tl2A.62.48 read from T0506.t04.many.frag # found chain 1tl2A in template set T0506 62 :EPDGTPFFF 1tl2A 49 :SPGGELYGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30608 # 1vl7A.62.53 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1vl7A 42 :DDAKN T0506 68 :FFF 1vl7A 48 :YIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=30610 # 1ylhA.62.257 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1ylhA 238 :GKDGD T0506 68 :FFF 1ylhA 244 :AIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30612 # 2cwsA.62.43 read from T0506.t04.many.frag # found chain 2cwsA in template set Warning: unaligning (T0506)E62 (2cwsA)D123 because P (beta_P) conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 2cwsA 124 :TDGAMTFW Number of specific fragments extracted= 1 number of extra gaps= 1 total=30613 # 1hxn.62.25 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1hxn 241 :DNHGA T0506 68 :FFF 1hxn 247 :YVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30615 # 1ynfA.62.322 read from T0506.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1ynfA 312 :RDDGS T0506 68 :FFF 1ynfA 318 :MLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30617 # 1ne9A.62.47 read from T0506.t04.many.frag # found chain 1ne9A in training set T0506 62 :EPDGTPFFF 1ne9A 48 :DDQGAIIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30618 # 1pbyB.62.41 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)D64 (1pbyB)G44 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EP 1pbyB 42 :AP T0506 65 :GT 1pbyB 45 :GR T0506 68 :FFF 1pbyB 48 :AYA Number of specific fragments extracted= 3 number of extra gaps= 2 total=30621 # 1khbA.62.320 read from T0506.t04.many.frag # found chain 1khbA in template set Warning: unaligning (T0506)E62 (1khbA)D318 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)F69 because of BadResidue code BAD_PEPTIDE in next template residue (1khbA)I326 Warning: unaligning (T0506)F70 because of BadResidue code BAD_PEPTIDE at template residue (1khbA)I326 T0506 63 :PDGTPF 1khbA 319 :AQGHLR Number of specific fragments extracted= 1 number of extra gaps= 2 total=30622 # 1p0zA.62.109 read from T0506.t04.many.frag # found chain 1p0zA in training set T0506 62 :EPDGTPFFF 1p0zA 114 :DATGKVIGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30623 # 2bjfA.62.147 read from T0506.t04.many.frag # found chain 2bjfA in template set Warning: unaligning (T0506)E62 (2bjfA)D148 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P63 (2bjfA)I149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (2bjfA)S153 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 2bjfA 150 :TGK T0506 68 :FFF 2bjfA 154 :IVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30625 # 1t1uA.62.321 read from T0506.t04.many.frag # found chain 1t1uA in template set Warning: unaligning (T0506)P63 because of BadResidue code BAD_PEPTIDE in next template residue (1t1uA)D325 Warning: unaligning (T0506)D64 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)D325 Warning: unaligning (T0506)G65 because of BadResidue code BAD_PEPTIDE at template residue (1t1uA)G326 Warning: unaligning (T0506)T66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1t1uA)T327 Warning: unaligning (T0506)P67 (1t1uA)C328 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1t1uA)C332 T0506 62 :E 1t1uA 323 :G T0506 68 :FF 1t1uA 329 :GV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30627 # 2bmoA.62.66 read from T0506.t04.many.frag # found chain 2bmoA in template set Warning: unaligning (T0506)P67 (2bmoA)V72 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 2bmoA 67 :QNDGS T0506 68 :FFF 2bmoA 73 :RAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30629 # 1xkiA.62.39 read from T0506.t04.many.frag # found chain 1xkiA in training set Warning: unaligning (T0506)P67 (1xkiA)L49 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1xkiA 44 :LEGGN T0506 68 :FFF 1xkiA 50 :EAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30631 # 1wteA.62.114 read from T0506.t04.many.frag # found chain 1wteA in template set Warning: unaligning (T0506)P67 (1wteA)I120 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1wteA 115 :RDDGR T0506 68 :FFF 1wteA 121 :ELL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30633 # 2a9dA.62.151 read from T0506.t04.many.frag # found chain 2a9dA in template set Warning: unaligning (T0506)F70 (2a9dA)A254 because Y (epsilon') conformation "forbidden" or filtered. T0506 62 :EPDGTPFF 2a9dA 246 :DPGGAPYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30634 # 1gxrA.62.105 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)E62 (1gxrA)L539 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1gxrA 540 :PDGC T0506 68 :FFF 1gxrA 545 :LIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30636 # 1dd9A.62.114 read from T0506.t04.many.frag # found chain 1dd9A in training set T0506 62 :EPDGTPFFF 1dd9A 210 :DKRGRVIGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=30637 # 1r0pA.62.99 read from T0506.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)D64 (1r0pA)E1150 because L (left) conformation "forbidden" or filtered. T0506 62 :EP 1r0pA 1148 :RS T0506 65 :GTPFFF 1r0pA 1151 :GSPLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30639 # 1quqB.62.34 read from T0506.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0506)P67 (1quqB)M40 because Y (epsilon') conformation "forbidden" or filtered. T0506 62 :EPDGT 1quqB 35 :HPTGK T0506 68 :FFF 1quqB 41 :FIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30641 # 1pjxA.62.124 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1pjxA 125 :DYEGN T0506 68 :FFF 1pjxA 131 :WIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30643 # 1thqA.62.61 read from T0506.t04.many.frag # found chain 1thqA in template set Warning: unaligning (T0506)E62 (1thqA)D61 because P (beta_P) conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 1thqA 62 :EKGNWHGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=30644 # 1ykdA.62.128 read from T0506.t04.many.frag # found chain 1ykdA in template set T0506 62 :EPDGTPFFF 1ykdA 186 :SEQGRLVAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30645 # 1kt6A.62.47 read from T0506.t04.many.frag # found chain 1kt6A in training set T0506 62 :EPDGTPFFF 1kt6A 48 :DENGHMSAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30646 # 1r5mA.62.157 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. T0506 62 :EPDGT 1r5mA 270 :NKDGT T0506 68 :FFF 1r5mA 276 :IIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30648 # 1t77A.62.81 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)E62 (1t77A)M2157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1t77A)A2162 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1t77A 2158 :ANRV T0506 68 :FFF 1t77A 2163 :VMF Number of specific fragments extracted= 2 number of extra gaps= 2 total=30650 # 2a9dA.63.152 read from T0506.t04.many.frag # found chain 2a9dA in template set T0506 63 :PDGTPFFFA 2a9dA 247 :PGGAPYGAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30651 # 1gxrA.63.106 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1gxrA 540 :PDGC T0506 68 :FFFA 1gxrA 545 :LIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30653 # 1vl7A.63.54 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1vl7A 43 :DAKN T0506 68 :FFFA 1vl7A 48 :YIYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30655 # 1r5mA.63.158 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1r5mA)M279 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1r5mA 271 :KDGT T0506 68 :FFF 1r5mA 276 :IIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30657 # 1t77A.63.82 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P67 (1t77A)A2162 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1t77A 2158 :ANRV T0506 68 :FFFA 1t77A 2163 :VMFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30659 # 1hxn.63.26 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1hxn)S250 because D (zeta) conformation "forbidden" or filtered. T0506 63 :PDGT 1hxn 242 :NHGA T0506 68 :FFF 1hxn 247 :YVF Number of specific fragments extracted= 2 number of extra gaps= 2 total=30661 # 1k3iA.63.251 read from T0506.t04.many.frag # found chain 1k3iA in training set T0506 63 :PDGTPFFFA 1k3iA 235 :GNGQIVVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30662 # 1mk0A.63.11 read from T0506.t04.many.frag # found chain 1mk0A in training set Warning: unaligning (T0506)P67 (1mk0A)V16 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1mk0A)S20 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1mk0A 12 :LNNK T0506 68 :FFF 1mk0A 17 :YVG Number of specific fragments extracted= 2 number of extra gaps= 2 total=30664 # 1ga6A.63.225 read from T0506.t04.many.frag # found chain 1ga6A in training set T0506 63 :PDGTPFFFA 1ga6A 226 :SNGKLWATG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30665 # 1f7lA.63.82 read from T0506.t04.many.frag # found chain 1f7lA in training set Warning: unaligning (T0506)A71 (1f7lA)C91 because D (zeta) conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 1f7lA 83 :QNGKPYII Number of specific fragments extracted= 1 number of extra gaps= 1 total=30666 # 1ylhA.63.258 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1ylhA 239 :KDGD T0506 68 :FFFA 1ylhA 244 :AIFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30668 # 1t4wA.63.24 read from T0506.t04.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)A71 (1t4wA)T255 because Y (epsilon') conformation "forbidden" or filtered. T0506 63 :PDGTPFFF 1t4wA 247 :SEHEKYLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=30669 # 1pbyB.63.42 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1pbyB 43 :PGGR T0506 68 :FFFA 1pbyB 48 :AYAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30671 # 1k8kC.63.105 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1k8kC 106 :PNEK T0506 68 :FFFA 1k8kC 111 :FAVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30673 # 1wdvA.63.50 read from T0506.t04.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P63 (1wdvA)N51 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1wdvA 52 :AGG T0506 68 :FFFA 1wdvA 56 :YAVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30675 # 1r0pA.63.100 read from T0506.t04.many.frag # found chain 1r0pA in training set Warning: unaligning (T0506)D64 (1r0pA)E1150 because L (left) conformation "forbidden" or filtered. T0506 63 :P 1r0pA 1149 :S T0506 65 :GTPFFFA 1r0pA 1151 :GSPLVVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30677 # 1ynfA.63.323 read from T0506.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1ynfA 313 :DDGS T0506 68 :FFFA 1ynfA 318 :MLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30679 1g4mA expands to /projects/compbio/data/pdb/1g4m.pdb.gz 1g4mA:# 1g4mA.63.13 read from T0506.t04.many.frag # adding 1g4mA to template set # found chain 1g4mA in template set Warning: unaligning (T0506)P67 (1g4mA)L18 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1g4mA 14 :PNGK T0506 68 :FFFA 1g4mA 19 :TVYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30681 # 3sil.63.41 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)P67 (3sil)I49 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 3sil 45 :SKGT T0506 68 :FFFA 3sil 50 :VVFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30683 # 1tl2A.63.49 read from T0506.t04.many.frag # found chain 1tl2A in template set T0506 63 :PDGTPFFFA 1tl2A 50 :PGGELYGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30684 # 1pguA.63.75 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)T66 (1pguA)Q79 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pguA)Y80 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDG 1pguA 76 :KGS T0506 68 :FFFA 1pguA 81 :LCSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30686 # 1jfbA.63.37 read from T0506.t04.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)P67 (1jfbA)L41 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1jfbA 37 :FDGS T0506 68 :FFFA 1jfbA 42 :AWLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30688 # 1quqB.63.35 read from T0506.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0506)P67 (1quqB)M40 because Y (epsilon') conformation "forbidden" or filtered. T0506 63 :PDGT 1quqB 36 :PTGK T0506 68 :FFFA 1quqB 41 :FILS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30690 # 1tt7A.63.81 read from T0506.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)P63 (1tt7A)A82 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D64 (1tt7A)E83 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GTPFFFA 1tt7A 84 :GDEVIAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=30691 # 1nytA.63.91 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1nytA 92 :EDGR T0506 68 :FFFA 1nytA 97 :LGDN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30693 # 1zvtA.63.92 read from T0506.t04.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)G65 (1zvtA)D591 because G (3-10) conformation "forbidden" or filtered. T0506 63 :PD 1zvtA 589 :SD T0506 66 :TPFFFA 1zvtA 592 :QKLLMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30695 # 1pjxA.63.125 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1pjxA 126 :YEGN T0506 68 :FFFA 1pjxA 131 :WITA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30697 # 2cwsA.63.44 read from T0506.t04.many.frag # found chain 2cwsA in template set T0506 63 :PDGTPFFFA 2cwsA 124 :TDGAMTFWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30698 # 1wcdJ.63.50 read from T0506.t04.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)P67 (1wcdJ)G55 because Y (epsilon') conformation "forbidden" or filtered. T0506 63 :PDGT 1wcdJ 51 :DTGS T0506 68 :FFFA 1wcdJ 56 :LIVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30700 1sz2A expands to /projects/compbio/data/pdb/1sz2.pdb.gz 1sz2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 535, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 537, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 539, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1311, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1313, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1315, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1317, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 1319, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1825, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1827, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1829, because occupancy 0.500 <= existing 0.500 in 1sz2A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1831, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2309, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2311, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2313, because occupancy 0.500 <= existing 0.500 in 1sz2A Skipped atom 2315, because occupancy 0.500 <= existing 0.500 in 1sz2A # 1sz2A.63.136 read from T0506.t04.many.frag # adding 1sz2A to template set # found chain 1sz2A in template set Warning: unaligning (T0506)P67 (1sz2A)I130 because E (beta_S) conformation "forbidden" or filtered. T0506 63 :PDGT 1sz2A 126 :EGKP T0506 68 :FFFA 1sz2A 131 :AVYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30702 # 1t77A.64.83 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P67 (1t77A)A2162 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1t77A 2159 :NRV T0506 68 :FFFAA 1t77A 2163 :VMFNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30704 # 1vl7A.64.55 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1vl7A 44 :AKN T0506 68 :FFFAA 1vl7A 48 :YIYVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30706 # 1xhnA.64.63 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 64 :DGTPFFFAA 1xhnA 64 :SGVPYFYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30707 # 1k3iA.64.252 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A71 (1k3iA)G243 because S (epsilon) conformation "forbidden" or filtered. T0506 64 :DGTPFFF 1k3iA 236 :NGQIVVT T0506 72 :A 1k3iA 244 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=30709 # 1gxrA.64.107 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1gxrA)G548 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1gxrA)G549 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGT 1gxrA 541 :DGC T0506 68 :FFF 1gxrA 545 :LIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30711 # 1pbyB.64.43 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)D64 (1pbyB)G44 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1pbyB)V52 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GT 1pbyB 45 :GR T0506 68 :FFFA 1pbyB 48 :AYAT Number of specific fragments extracted= 2 number of extra gaps= 3 total=30713 # 2a9dA.64.153 read from T0506.t04.many.frag # found chain 2a9dA in template set T0506 64 :DGTPFFFAA 2a9dA 248 :GGAPYGASI Number of specific fragments extracted= 1 number of extra gaps= 0 total=30714 # 1hxn.64.27 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1hxn)G251 because S (epsilon) conformation "forbidden" or filtered. T0506 64 :DGT 1hxn 243 :HGA T0506 68 :FFFA 1hxn 247 :YVFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30716 # 1r5mA.64.159 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)T66 (1r5mA)T274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DG 1r5mA 272 :DG T0506 68 :FFFAA 1r5mA 276 :IISMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30718 # 1tt7A.64.82 read from T0506.t04.many.frag # found chain 1tt7A in template set T0506 64 :DGTPFFFAA 1tt7A 83 :EGDEVIATS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30719 # 1ty9A.64.81 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P67 (1ty9A)V85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGT 1ty9A 82 :DAG T0506 68 :FFF 1ty9A 86 :VFS T0506 72 :A 1ty9A 90 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=30722 # 2furA.64.55 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)P67 (2furA)I58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F70 (2furA)H61 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGT 2furA 55 :GKT T0506 68 :FF 2furA 59 :YL T0506 71 :AA 2furA 62 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=30725 # 1hq0A.64.132 read from T0506.t04.many.frag # found chain 1hq0A in template set Warning: unaligning (T0506)T66 (1hq0A)K854 because D (zeta) conformation "forbidden" or filtered. T0506 64 :DG 1hq0A 852 :EG T0506 67 :PFFFAA 1hq0A 855 :PVIITS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30727 # 1t4wA.64.25 read from T0506.t04.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)A71 (1t4wA)T255 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGTPFFF 1t4wA 248 :EHEKYLW T0506 72 :A 1t4wA 256 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=30729 # 1ga6A.64.226 read from T0506.t04.many.frag # found chain 1ga6A in training set Warning: unaligning (T0506)A72 (1ga6A)G235 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGTPFFFA 1ga6A 227 :NGKLWATG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30730 # 1ylhA.64.259 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1ylhA)G248 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGT 1ylhA 240 :DGD T0506 68 :FFFA 1ylhA 244 :AIFF Number of specific fragments extracted= 2 number of extra gaps= 2 total=30732 # 1jfbA.64.38 read from T0506.t04.many.frag # found chain 1jfbA in training set Warning: unaligning (T0506)P67 (1jfbA)L41 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1jfbA 38 :DGS T0506 68 :FFFAA 1jfbA 42 :AWLVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30734 # 1k8kC.64.106 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1k8kC 107 :NEK T0506 68 :FFFAA 1k8kC 111 :FAVGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30736 # 1j5wA.64.162 read from T0506.t04.many.frag # found chain 1j5wA in template set T0506 64 :DGTPFFFAA 1j5wA 151 :KDIPLEITY Number of specific fragments extracted= 1 number of extra gaps= 0 total=30737 # 1quqB.64.36 read from T0506.t04.many.frag # found chain 1quqB in template set Warning: unaligning (T0506)P67 (1quqB)M40 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1quqB)S44 because P (beta_P) conformation "forbidden" or filtered. T0506 64 :DGT 1quqB 37 :TGK T0506 68 :FFF 1quqB 41 :FIL T0506 72 :A 1quqB 45 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=30740 # 2cwsA.64.45 read from T0506.t04.many.frag # found chain 2cwsA in template set T0506 64 :DGTPFFFAA 2cwsA 125 :DGAMTFWAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=30741 # 1wdvA.64.51 read from T0506.t04.many.frag # found chain 1wdvA in training set Warning: unaligning (T0506)P67 (1wdvA)V55 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1wdvA 52 :AGG T0506 68 :FFFAA 1wdvA 56 :YAVVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=30743 # 2bjqA.64.72 read from T0506.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0506)P67 (2bjqA)I76 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 2bjqA 73 :GGQ T0506 68 :FFFAA 2bjqA 77 :QILTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30745 # 1hs6A.64.126 read from T0506.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)D64 (1hs6A)K126 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G65 (1hs6A)E127 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1hs6A)Q134 because D (zeta) conformation "forbidden" or filtered. T0506 66 :TPFFFA 1hs6A 128 :HPYLFS Number of specific fragments extracted= 1 number of extra gaps= 2 total=30746 # 1ynfA.64.324 read from T0506.t04.many.frag # found chain 1ynfA in template set Warning: unaligning (T0506)P67 (1ynfA)M317 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1ynfA)L321 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1ynfA)P322 because P (beta_P) conformation "forbidden" or filtered. T0506 64 :DGT 1ynfA 314 :DGS T0506 68 :FFF 1ynfA 318 :MLV Number of specific fragments extracted= 2 number of extra gaps= 2 total=30748 # 1mk0A.64.12 read from T0506.t04.many.frag # found chain 1mk0A in training set Warning: unaligning (T0506)P67 (1mk0A)V16 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1mk0A 13 :NNK T0506 68 :FFFAA 1mk0A 17 :YVGSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30750 # 1pjxA.64.126 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1pjxA)A134 because D (zeta) conformation "forbidden" or filtered. T0506 64 :DGT 1pjxA 127 :EGN T0506 68 :FFF 1pjxA 131 :WIT T0506 72 :A 1pjxA 135 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=30753 # 1k4iA.64.36 read from T0506.t04.many.frag # found chain 1k4iA in training set Warning: unaligning (T0506)P67 (1k4iA)A40 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1k4iA)A45 because P (beta_P) conformation "forbidden" or filtered. T0506 64 :DGT 1k4iA 37 :ENE T0506 68 :FFFA 1k4iA 41 :DLII Number of specific fragments extracted= 2 number of extra gaps= 2 total=30755 # 1mbmA.64.22 read from T0506.t04.many.frag # found chain 1mbmA in template set Warning: unaligning (T0506)P67 (1mbmA)V32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1mbmA)T36 because Y (epsilon') conformation "forbidden" or filtered. T0506 64 :DGT 1mbmA 29 :NNE T0506 68 :FFF 1mbmA 33 :VVL T0506 72 :A 1mbmA 37 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=30758 # 1nytA.64.92 read from T0506.t04.many.frag # found chain 1nytA in training set Warning: unaligning (T0506)P67 (1nytA)L96 because E (beta_S) conformation "forbidden" or filtered. T0506 64 :DGT 1nytA 93 :DGR T0506 68 :FFFAA 1nytA 97 :LGDNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30760 # 1t77A.65.84 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P67 (1t77A)A2162 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1t77A 2160 :RV T0506 68 :FFFAAG 1t77A 2163 :VMFNFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30762 # 1xhnA.65.64 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A71 (1xhnA)L71 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GTPFFF 1xhnA 65 :GVPYFY T0506 72 :AG 1xhnA 72 :SP Number of specific fragments extracted= 2 number of extra gaps= 1 total=30764 # 1vl7A.65.56 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1vl7A 45 :KN T0506 68 :FFFAAG 1vl7A 48 :YIYVSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30766 # 1ty9A.65.82 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P67 (1ty9A)V85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GT 1ty9A 83 :AG T0506 68 :FFF 1ty9A 86 :VFS T0506 72 :AG 1ty9A 90 :HA Number of specific fragments extracted= 3 number of extra gaps= 2 total=30769 # 1k3iA.65.253 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A71 (1k3iA)G243 because S (epsilon) conformation "forbidden" or filtered. T0506 65 :GTPFFF 1k3iA 237 :GQIVVT T0506 72 :AG 1k3iA 244 :GN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30771 # 2furA.65.56 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)P67 (2furA)I58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F70 (2furA)H61 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GT 2furA 56 :KT T0506 68 :FF 2furA 59 :YL T0506 71 :AAG 2furA 62 :GSM Number of specific fragments extracted= 3 number of extra gaps= 2 total=30774 # 1pbyB.65.44 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1pbyB 45 :GR T0506 68 :FFFAAG 1pbyB 48 :AYATVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=30776 # 1hxn.65.28 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1hxn)S250 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1hxn)G251 because S (epsilon) conformation "forbidden" or filtered. T0506 65 :GT 1hxn 244 :GA T0506 68 :FFF 1hxn 247 :YVF T0506 73 :G 1hxn 252 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=30779 # 1gxrA.65.108 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1gxrA)G548 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1gxrA)G549 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GT 1gxrA 542 :GC T0506 68 :FFF 1gxrA 545 :LIV T0506 73 :G 1gxrA 550 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=30782 # 1k8kC.65.107 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1k8kC 108 :EK T0506 68 :FFFAAG 1k8kC 111 :FAVGSG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30784 # 1t4wA.65.26 read from T0506.t04.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)G73 (1t4wA)M257 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1t4wA 249 :HEKYLWTK Number of specific fragments extracted= 1 number of extra gaps= 1 total=30785 # 1j5wA.65.163 read from T0506.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0506)G73 (1j5wA)G160 because N (gamma') conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1j5wA 152 :DIPLEITY Number of specific fragments extracted= 1 number of extra gaps= 1 total=30786 # 1pjxA.65.127 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1pjxA)A134 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1pjxA)A136 because P (beta_P) conformation "forbidden" or filtered. T0506 65 :GT 1pjxA 128 :GN T0506 68 :FFF 1pjxA 131 :WIT T0506 72 :A 1pjxA 135 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=30789 # 1hq0A.65.133 read from T0506.t04.many.frag # found chain 1hq0A in template set T0506 65 :GTPFFFAAG 1hq0A 853 :GKPVIITSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30790 # 1ojrA.65.66 read from T0506.t04.many.frag # found chain 1ojrA in training set T0506 65 :GTPFFFAAG 1ojrA 67 :NTPFIVTGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30791 # 1efyA.65.195 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)A72 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GTPFFFA 1efyA 857 :RQLLWHG T0506 73 :G 1efyA 865 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=30793 # 1r5mA.65.160 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)T66 (1r5mA)T274 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :G 1r5mA 273 :G T0506 68 :FFFAAG 1r5mA 276 :IISMDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30795 # 1txvA.65.178 read from T0506.t04.many.frag # found chain 1txvA in template set T0506 65 :GTPFFFAAG 1txvA 179 :GELVLGAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30796 # 1yfqA.65.22 read from T0506.t04.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)P67 (1yfqA)L25 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 1yfqA 23 :KS T0506 68 :FFFAAG 1yfqA 26 :LLITSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=30798 # 1ylhA.65.260 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1ylhA)F247 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1ylhA)G248 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GT 1ylhA 241 :GD T0506 68 :FFF 1ylhA 244 :AIF T0506 73 :G 1ylhA 249 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=30801 # 1k7jA.65.62 read from T0506.t04.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)G65 (1k7jA)H63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1k7jA)D71 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :TPFFFAA 1k7jA 64 :NFTLMCR Number of specific fragments extracted= 1 number of extra gaps= 2 total=30802 # 1pz7A.65.61 read from T0506.t04.many.frag # found chain 1pz7A in training set Warning: unaligning (T0506)T66 (1pz7A)G63 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :G 1pz7A 62 :Q T0506 67 :PFFFAAG 1pz7A 64 :LILWSGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30804 # 1k8kC.65.153 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)A72 (1k8kC)S161 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GTPFFFA 1k8kC 154 :SVLLAAG T0506 73 :G 1k8kC 162 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=30806 # 1tt7A.65.83 read from T0506.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)G73 (1tt7A)Y92 because S (epsilon) conformation "forbidden" or filtered. T0506 65 :GTPFFFAA 1tt7A 84 :GDEVIATS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30807 # 2bjqA.65.73 read from T0506.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0506)P67 (2bjqA)I76 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GT 2bjqA 74 :GQ T0506 68 :FFFAAG 2bjqA 77 :QILTAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30809 # 1bupA.65.98 read from T0506.t04.many.frag # found chain 1bupA in training set Warning: unaligning (T0506)A71 (1bupA)V105 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1bupA)Y107 because E (beta_S) conformation "forbidden" or filtered. T0506 65 :GTPFFF 1bupA 99 :GRPKVQ T0506 72 :A 1bupA 106 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=30811 # 2bvcA.65.74 read from T0506.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0506)P67 (2bvcA)M69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2bvcA)D74 because D (zeta) conformation "forbidden" or filtered. T0506 65 :GT 2bvcA 67 :SD T0506 68 :FFFA 2bvcA 70 :LLLP T0506 73 :G 2bvcA 75 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=30814 # 2cwsA.65.46 read from T0506.t04.many.frag # found chain 2cwsA in template set T0506 65 :GTPFFFAAG 2cwsA 126 :GAMTFWAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=30815 # 1uv4A.65.82 read from T0506.t04.many.frag # found chain 1uv4A in training set T0506 65 :GTPFFFAAG 1uv4A 83 :GKYWLYYSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30816 # 1mbmA.65.23 read from T0506.t04.many.frag # found chain 1mbmA in template set Warning: unaligning (T0506)P67 (1mbmA)V32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1mbmA)T36 because Y (epsilon') conformation "forbidden" or filtered. T0506 65 :GT 1mbmA 30 :NE T0506 68 :FFF 1mbmA 33 :VVL T0506 72 :AG 1mbmA 37 :AS Number of specific fragments extracted= 3 number of extra gaps= 2 total=30819 # 1t77A.66.85 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P67 (1t77A)A2162 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1t77A 2161 :V T0506 68 :FFFAAGL 1t77A 2163 :VMFNFPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=30821 # 1xhnA.66.65 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 66 :TPFFFAAGL 1xhnA 66 :VPYFYLSPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30822 # 1vl7A.66.57 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1vl7A)S52 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 66 :T 1vl7A 46 :N T0506 68 :FFFA 1vl7A 48 :YIYV T0506 74 :L 1vl7A 54 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=30825 # 1ty9A.66.83 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P67 (1ty9A)V85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :T 1ty9A 84 :G T0506 68 :FFF 1ty9A 86 :VFS T0506 72 :AGL 1ty9A 90 :HAG Number of specific fragments extracted= 3 number of extra gaps= 2 total=30828 # 1k3iA.66.254 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A72 (1k3iA)G244 because S (epsilon) conformation "forbidden" or filtered. T0506 66 :TPFFFA 1k3iA 238 :QIVVTG T0506 73 :GL 1k3iA 245 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=30830 # 2furA.66.57 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)P67 (2furA)I58 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (2furA)G62 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :T 2furA 57 :T T0506 68 :FFF 2furA 59 :YLH T0506 72 :AGL 2furA 63 :SMK Number of specific fragments extracted= 3 number of extra gaps= 2 total=30833 # 1efyA.66.196 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)A72 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1efyA)R865 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :TPFFFA 1efyA 858 :QLLWHG T0506 74 :L 1efyA 866 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=30835 # 1pbyB.66.45 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1pbyB)V52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1pbyB)K54 because L (left) conformation "forbidden" or filtered. T0506 66 :T 1pbyB 46 :R T0506 68 :FFFA 1pbyB 48 :AYAT T0506 73 :G 1pbyB 53 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=30838 # 1gxrA.66.109 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1gxrA)G549 because Y (epsilon') conformation "forbidden" or filtered. T0506 66 :T 1gxrA 543 :C T0506 68 :FFFA 1gxrA 545 :LIVG T0506 73 :GL 1gxrA 550 :EA Number of specific fragments extracted= 3 number of extra gaps= 2 total=30841 # 1k8kC.66.108 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P67 (1k8kC)K110 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1k8kC 109 :K T0506 68 :FFFAAGL 1k8kC 111 :FAVGSGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30843 # 1t4wA.66.27 read from T0506.t04.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)G73 (1t4wA)M257 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :TPFFFAA 1t4wA 250 :EKYLWTK T0506 74 :L 1t4wA 258 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=30845 # 1hxn.66.29 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)P67 (1hxn)T246 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1hxn)S250 because D (zeta) conformation "forbidden" or filtered. T0506 66 :T 1hxn 245 :A T0506 68 :FFF 1hxn 247 :YVF T0506 72 :AGL 1hxn 251 :GSH Number of specific fragments extracted= 3 number of extra gaps= 2 total=30848 # 1txvA.66.179 read from T0506.t04.many.frag # found chain 1txvA in template set T0506 66 :TPFFFAAGL 1txvA 180 :ELVLGAPGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30849 # 1j5wA.66.164 read from T0506.t04.many.frag # found chain 1j5wA in template set T0506 66 :TPFFFAAGL 1j5wA 153 :IPLEITYGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30850 # 1k7jA.66.63 read from T0506.t04.many.frag # found chain 1k7jA in training set T0506 66 :TPFFFAAGL 1k7jA 64 :NFTLMCRDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30851 # 1pjxA.66.128 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)P67 (1pjxA)L130 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1pjxA 129 :N T0506 68 :FFFAAGL 1pjxA 131 :WITAPAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30853 # 1ojrA.66.67 read from T0506.t04.many.frag # found chain 1ojrA in training set T0506 66 :TPFFFAAGL 1ojrA 68 :TPFIVTGSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30854 # 1yfqA.66.23 read from T0506.t04.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)T66 (1yfqA)S24 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P67 (1yfqA)L25 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGL 1yfqA 26 :LLITSWD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30855 # 1hq0A.66.134 read from T0506.t04.many.frag # found chain 1hq0A in template set T0506 66 :TPFFFAAGL 1hq0A 854 :KPVIITSGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30856 # 1ylhA.66.261 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1ylhA)G248 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1ylhA)L249 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :T 1ylhA 242 :D T0506 68 :FFFA 1ylhA 244 :AIFF T0506 74 :L 1ylhA 250 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=30859 # 2cwsA.66.47 read from T0506.t04.many.frag # found chain 2cwsA in template set Warning: unaligning (T0506)A72 (2cwsA)P133 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :TPFFFA 2cwsA 127 :AMTFWA T0506 73 :GL 2cwsA 134 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30861 # 2asfA.66.49 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A71 (2asfA)T55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2asfA)G57 because P (beta_P) conformation "forbidden" or filtered. T0506 66 :TPFFF 2asfA 50 :IARVI T0506 72 :A 2asfA 56 :T T0506 74 :L 2asfA 58 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=30864 # 2f06A.66.46 read from T0506.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)T66 because of BadResidue code BAD_PEPTIDE at template residue (2f06A)I44 Warning: unaligning (T0506)F68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f06A)G47 Warning: unaligning (T0506)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f06A)G47 T0506 67 :P 2f06A 45 :L T0506 70 :FAAGL 2f06A 48 :IVSDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=30866 # 2bjqA.66.74 read from T0506.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0506)P67 (2bjqA)I76 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 2bjqA 75 :Q T0506 68 :FFFAAGL 2bjqA 77 :QILTATE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30868 # 1pz7A.66.62 read from T0506.t04.many.frag # found chain 1pz7A in training set T0506 66 :TPFFFAAGL 1pz7A 63 :GLILWSGKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=30869 # 1lzlA.66.65 read from T0506.t04.many.frag # found chain 1lzlA in training set Warning: unaligning (T0506)P67 (1lzlA)I67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1lzlA)T71 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1lzlA)D73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (1lzlA)T75 T0506 66 :T 1lzlA 66 :K T0506 68 :FFF 1lzlA 68 :RFV T0506 72 :A 1lzlA 72 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=30872 # 2bvcA.66.75 read from T0506.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0506)P67 (2bvcA)M69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2bvcA)D74 because D (zeta) conformation "forbidden" or filtered. T0506 66 :T 2bvcA 68 :D T0506 68 :FFFA 2bvcA 70 :LLLP T0506 73 :GL 2bvcA 75 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30875 # 1tq5A.66.88 read from T0506.t04.many.frag # found chain 1tq5A in template set Warning: unaligning (T0506)P67 (1tq5A)F90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1tq5A)G96 because S (epsilon) conformation "forbidden" or filtered. T0506 66 :T 1tq5A 89 :E T0506 68 :FFFAA 1tq5A 91 :QIMSA T0506 74 :L 1tq5A 97 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=30878 # 1tt7A.66.84 read from T0506.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)G73 (1tt7A)Y92 because S (epsilon) conformation "forbidden" or filtered. T0506 66 :TPFFFAA 1tt7A 85 :DEVIATS T0506 74 :L 1tt7A 93 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=30880 # 1r5mA.66.161 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1r5mA)D280 because E (beta_S) conformation "forbidden" or filtered. T0506 66 :T 1r5mA 274 :T T0506 68 :FFFA 1r5mA 276 :IISM T0506 73 :GL 1r5mA 281 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30883 # 1xhnA.67.66 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 67 :PFFFAAGLT 1xhnA 67 :PYFYLSPLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=30884 # 1vl7A.67.58 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P67 (1vl7A)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 68 :FFFAA 1vl7A 48 :YIYVS T0506 74 :LT 1vl7A 54 :LA Number of specific fragments extracted= 2 number of extra gaps= 2 total=30886 # 1t77A.67.86 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)P67 (1t77A)A2162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1t77A)F2167 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFFA 1t77A 2163 :VMFN T0506 73 :G 1t77A 2168 :P T0506 75 :T 1t77A 2170 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=30889 # 1efyA.67.197 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)A72 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1efyA)R865 because P (beta_P) conformation "forbidden" or filtered. T0506 67 :PFFFA 1efyA 859 :LLWHG T0506 74 :LT 1efyA 866 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30891 # 1ty9A.67.84 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P67 (1ty9A)V85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFF 1ty9A 86 :VFS T0506 72 :AGLT 1ty9A 90 :HAGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=30893 # 1tq5A.67.89 read from T0506.t04.many.frag # found chain 1tq5A in template set Warning: unaligning (T0506)P67 (1tq5A)F90 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 1tq5A 91 :QIMSAGTG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30894 # 1pbyB.67.46 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P67 (1pbyB)I47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1pbyB)V52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1pbyB)K54 because L (left) conformation "forbidden" or filtered. T0506 68 :FFFA 1pbyB 48 :AYAT T0506 73 :G 1pbyB 53 :N T0506 75 :T 1pbyB 55 :S Number of specific fragments extracted= 3 number of extra gaps= 3 total=30897 # 1gxrA.67.110 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P67 (1gxrA)T544 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1gxrA)G549 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1gxrA)E550 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1gxrA)A551 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFFA 1gxrA 545 :LIVG T0506 75 :T 1gxrA 552 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=30899 # 1k3iA.67.255 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A71 (1k3iA)G243 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1k3iA)G244 because S (epsilon) conformation "forbidden" or filtered. T0506 67 :PFFF 1k3iA 239 :IVVT T0506 73 :GLT 1k3iA 245 :NDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30901 # 2furA.67.58 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)P67 (2furA)I58 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 2furA 59 :YLHGSMKS Number of specific fragments extracted= 1 number of extra gaps= 1 total=30902 # 2bw4A.67.131 read from T0506.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0506)P67 (2bw4A)F132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bw4A)Y134 Warning: unaligning (T0506)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bw4A)Y134 Warning: unaligning (T0506)F70 (2bw4A)H135 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2bw4A)A137 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (2bw4A)G140 because T (delta_L) conformation "forbidden" or filtered. T0506 71 :A 2bw4A 136 :C T0506 73 :GL 2bw4A 138 :PE Number of specific fragments extracted= 2 number of extra gaps= 3 total=30904 # 1k7jA.67.64 read from T0506.t04.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)A71 (1k7jA)C69 because E (beta_S) conformation "forbidden" or filtered. T0506 67 :PFFF 1k7jA 65 :FTLM T0506 72 :AGLT 1k7jA 70 :RDLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=30906 # 2f06A.67.47 read from T0506.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)F68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f06A)G47 Warning: unaligning (T0506)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f06A)G47 Warning: unaligning (T0506)G73 (2f06A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 67 :P 2f06A 45 :L T0506 70 :FAA 2f06A 48 :IVS T0506 74 :LT 2f06A 52 :PD Number of specific fragments extracted= 3 number of extra gaps= 2 total=30909 # 2bjqA.67.75 read from T0506.t04.many.frag # found chain 2bjqA in training set Warning: unaligning (T0506)P67 (2bjqA)I76 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 2bjqA 77 :QILTATEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=30910 # 1ylhA.67.262 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)P67 (1ylhA)V243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1ylhA)G248 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1ylhA)L249 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (1ylhA)G251 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFFA 1ylhA 244 :AIFF T0506 74 :L 1ylhA 250 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=30912 # 1kv7A.67.109 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)P67 (1kv7A)C138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1kv7A)Q144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (1kv7A)G146 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFFAA 1kv7A 139 :WFHPH T0506 74 :L 1kv7A 145 :H Number of specific fragments extracted= 2 number of extra gaps= 3 total=30914 1umhA expands to /projects/compbio/data/pdb/1umh.pdb.gz 1umhA:# 1umhA.67.57 read from T0506.t04.many.frag # adding 1umhA to template set # found chain 1umhA in template set Warning: unaligning (T0506)P67 (1umhA)K171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1umhA)S176 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFFA 1umhA 172 :YFAS T0506 73 :GLT 1umhA 177 :FEW Number of specific fragments extracted= 2 number of extra gaps= 2 total=30916 # 2f1fA.67.46 read from T0506.t04.many.frag # found chain 2f1fA in template set Warning: unaligning (T0506)P67 (2f1fA)M46 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2f1fA)V51 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFA 2f1fA 47 :TIQT T0506 73 :GLT 2f1fA 52 :GDE Number of specific fragments extracted= 2 number of extra gaps= 2 total=30918 # 2bvcA.67.76 read from T0506.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0506)P67 (2bvcA)M69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2bvcA)D74 because D (zeta) conformation "forbidden" or filtered. T0506 68 :FFFA 2bvcA 70 :LLLP T0506 73 :GLT 2bvcA 75 :PET Number of specific fragments extracted= 2 number of extra gaps= 2 total=30920 # 1lzlA.67.66 read from T0506.t04.many.frag # found chain 1lzlA in training set Warning: unaligning (T0506)P67 (1lzlA)I67 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (1lzlA)T75 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (1lzlA)T75 T0506 68 :FFFAAG 1lzlA 68 :RFVTPD Number of specific fragments extracted= 1 number of extra gaps= 2 total=30921 # 2asfA.67.50 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 67 :PFFFAAG 2asfA 51 :ARVITTG T0506 75 :T 2asfA 59 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30923 # 1t4wA.67.28 read from T0506.t04.many.frag # found chain 1t4wA in template set Warning: unaligning (T0506)G73 (1t4wA)M257 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1t4wA)G258 because T (delta_L) conformation "forbidden" or filtered. T0506 67 :PFFFAA 1t4wA 251 :KYLWTK T0506 75 :T 1t4wA 259 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=30925 # 1g4mA.67.17 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)P67 (1g4mA)L18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1g4mA)K24 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFFAA 1g4mA 19 :TVYLG T0506 74 :LT 1g4mA 25 :RD Number of specific fragments extracted= 2 number of extra gaps= 2 total=30927 # 1tt7A.67.85 read from T0506.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)G73 (1tt7A)Y92 because S (epsilon) conformation "forbidden" or filtered. T0506 67 :PFFFAA 1tt7A 86 :EVIATS T0506 74 :LT 1tt7A 93 :EL Number of specific fragments extracted= 2 number of extra gaps= 1 total=30929 # 1arb.67.49 read from T0506.t04.many.frag # found chain 1arb in training set Warning: unaligning (T0506)A71 (1arb)T54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1arb)A55 because P (beta_P) conformation "forbidden" or filtered. T0506 67 :PFFF 1arb 50 :MYFL T0506 73 :GLT 1arb 56 :HHC Number of specific fragments extracted= 2 number of extra gaps= 1 total=30931 # 1r5mA.67.162 read from T0506.t04.many.frag # found chain 1r5mA in training set Warning: unaligning (T0506)P67 (1r5mA)H275 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (1r5mA)N283 because L (left) conformation "forbidden" or filtered. T0506 68 :FFFAAGL 1r5mA 276 :IISMDVE Number of specific fragments extracted= 1 number of extra gaps= 2 total=30932 # 1pz7A.67.63 read from T0506.t04.many.frag # found chain 1pz7A in training set T0506 67 :PFFFAAGLT 1pz7A 64 :LILWSGKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30933 1e9rA expands to /projects/compbio/data/pdb/1e9r.pdb.gz 1e9rA:# 1e9rA.67.280 read from T0506.t04.many.frag # adding 1e9rA to template set # found chain 1e9rA in template set Warning: unaligning (T0506)P67 (1e9rA)L351 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 1e9rA 352 :WLFIDELA Number of specific fragments extracted= 1 number of extra gaps= 1 total=30934 # 2cbiA.67.111 read from T0506.t04.many.frag # found chain 2cbiA in template set Warning: unaligning (T0506)P67 (2cbiA)I142 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 2cbiA 143 :AIEGKDGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=30935 # 1yfqA.67.24 read from T0506.t04.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)P67 (1yfqA)L25 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFFAAGLT 1yfqA 26 :LLITSWDG Number of specific fragments extracted= 1 number of extra gaps= 1 total=30936 # 1xhnA.68.67 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 68 :FFFAAGLTL 1xhnA 68 :YFYLSPLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=30937 # 1vl7A.68.59 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 68 :FFFAA 1vl7A 48 :YIYVS T0506 74 :LTL 1vl7A 54 :LAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=30939 # 1ty9A.68.85 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A71 (1ty9A)T89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (1ty9A)H90 because E (beta_S) conformation "forbidden" or filtered. T0506 68 :FFF 1ty9A 86 :VFS T0506 73 :GLTL 1ty9A 91 :AGSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=30941 # 1t77A.68.87 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)L74 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFFAAG 1t77A 2163 :VMFNFP T0506 75 :TL 1t77A 2170 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30943 # 1efyA.68.198 read from T0506.t04.many.frag # found chain 1efyA in template set T0506 68 :FFFAAGLTL 1efyA 860 :LWHGSRTTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=30944 # 1pbyB.68.47 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)A72 (1pbyB)V52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1pbyB)K54 because L (left) conformation "forbidden" or filtered. T0506 68 :FFFA 1pbyB 48 :AYAT T0506 73 :G 1pbyB 53 :N T0506 75 :TL 1pbyB 55 :SE Number of specific fragments extracted= 3 number of extra gaps= 2 total=30947 # 2furA.68.59 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)A71 (2furA)G62 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFF 2furA 59 :YLH T0506 72 :AGLTL 2furA 63 :SMKSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=30949 # 2asfA.68.51 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A71 (2asfA)T55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2asfA)G57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFF 2asfA 52 :RVI T0506 72 :A 2asfA 56 :T T0506 75 :TL 2asfA 59 :SQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=30952 # 1r5mA.68.163 read from T0506.t04.many.frag # found chain 1r5mA in training set T0506 68 :FFFAAGLTL 1r5mA 276 :IISMDVENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=30953 # 1ylhA.68.263 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)A72 (1ylhA)G248 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1ylhA)L249 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFA 1ylhA 244 :AIFF T0506 74 :LTL 1ylhA 250 :SGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30955 # 1tt7A.68.86 read from T0506.t04.many.frag # found chain 1tt7A in template set Warning: unaligning (T0506)A72 (1tt7A)S91 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L76 (1tt7A)G95 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFFA 1tt7A 87 :VIAT T0506 73 :GLT 1tt7A 92 :YEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=30957 # 2f1fA.68.47 read from T0506.t04.many.frag # found chain 2f1fA in template set T0506 68 :FFFAAGLTL 2f1fA 47 :TIQTVGDEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30958 # 1jr7A.68.174 read from T0506.t04.many.frag # found chain 1jr7A in template set T0506 68 :FFFAAGLTL 1jr7A 189 :LLLHLDDWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=30959 # 1kv7A.68.110 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)G73 (1kv7A)Q144 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1kv7A 139 :WFHPH T0506 74 :LTL 1kv7A 145 :HGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30961 1mpxA expands to /projects/compbio/data/pdb/1mpx.pdb.gz 1mpxA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1mpxA.68.40 read from T0506.t04.many.frag # adding 1mpxA to template set # found chain 1mpxA in template set Warning: unaligning (T0506)G73 (1mpxA)K68 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFFAA 1mpxA 63 :VIVLP T0506 74 :LTL 1mpxA 69 :GAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30963 # 2aeuA.68.174 read from T0506.t04.many.frag # found chain 2aeuA in template set T0506 68 :FFFAAGLTL 2aeuA 175 :VFVDDASGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30964 # 1k7jA.68.65 read from T0506.t04.many.frag # found chain 1k7jA in training set Warning: unaligning (T0506)G73 (1k7jA)D71 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFFAA 1k7jA 66 :TLMCR T0506 74 :LTL 1k7jA 72 :LSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30966 # 1s3cA.68.4 read from T0506.t04.many.frag # found chain 1s3cA in training set Warning: unaligning (T0506)A71 because of BadResidue code BAD_PEPTIDE in next template residue (1s3cA)N9 Warning: unaligning (T0506)A72 because of BadResidue code BAD_PEPTIDE at template residue (1s3cA)N9 T0506 68 :FFF 1s3cA 5 :TIY T0506 73 :GLTL 1s3cA 10 :PASG Number of specific fragments extracted= 2 number of extra gaps= 1 total=30968 # 1zs9A.68.207 read from T0506.t04.many.frag # found chain 1zs9A in template set Warning: unaligning (T0506)A71 (1zs9A)T211 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFF 1zs9A 208 :LFL T0506 72 :AGLTL 1zs9A 212 :DVTRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30970 1k8wA expands to /projects/compbio/data/pdb/1k8w.pdb.gz 1k8wA:Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 356, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1226, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1232, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1240, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1616, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1618, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1626, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1736, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1738, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1740, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1742, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1744, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1746, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1752, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1796, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1798, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1800, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1804, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1806, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1810, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2300, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2302, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2304, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2306, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2308, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2310, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2312, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2314, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2316, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2318, because occupancy 0.500 <= existing 0.500 in 1k8wA Skipped atom 2320, because occupancy 0.500 <= existing 0.500 in 1k8wA # 1k8wA.68.68 read from T0506.t04.many.frag # adding 1k8wA to template set # found chain 1k8wA in template set Warning: unaligning (T0506)A72 (1k8wA)G60 because S (epsilon) conformation "forbidden" or filtered. T0506 68 :FFFA 1k8wA 56 :PICL T0506 73 :GLTL 1k8wA 61 :EATK Number of specific fragments extracted= 2 number of extra gaps= 1 total=30972 # 1ryiA.68.107 read from T0506.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0506)A71 (1ryiA)L98 because P (beta_P) conformation "forbidden" or filtered. T0506 68 :FFF 1ryiA 95 :MFK T0506 72 :AGLTL 1ryiA 99 :AFSEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=30974 # 2f06A.68.48 read from T0506.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)F68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f06A)G47 Warning: unaligning (T0506)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f06A)G47 Warning: unaligning (T0506)A71 (2f06A)V49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2f06A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 70 :F 2f06A 48 :I T0506 72 :A 2f06A 50 :S T0506 74 :LTL 2f06A 52 :PDK Number of specific fragments extracted= 3 number of extra gaps= 3 total=30977 # 1j5wA.68.166 read from T0506.t04.many.frag # found chain 1j5wA in template set T0506 68 :FFFAAGLTL 1j5wA 155 :LEITYGLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=30978 # 1br9.68.61 read from T0506.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0506)A71 (1br9)T65 because Y (epsilon') conformation "forbidden" or filtered. T0506 68 :FFF 1br9 62 :FIY T0506 72 :AGLTL 1br9 66 :APSSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=30980 # 1hyoA.68.204 read from T0506.t04.many.frag # found chain 1hyoA in training set Warning: unaligning (T0506)A71 (1hyoA)V206 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1hyoA)N210 Warning: unaligning (T0506)T75 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1hyoA)N210 T0506 68 :FFF 1hyoA 203 :AFF T0506 72 :AG 1hyoA 207 :GP T0506 76 :L 1hyoA 211 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=30983 # 1lzlA.68.67 read from T0506.t04.many.frag # found chain 1lzlA in training set Warning: unaligning (T0506)G73 (1lzlA)D73 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE in next template residue (1lzlA)T75 Warning: unaligning (T0506)T75 because of BadResidue code BAD_PEPTIDE at template residue (1lzlA)T75 T0506 68 :FFFAA 1lzlA 68 :RFVTP T0506 76 :L 1lzlA 76 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=30985 # 1po5A.68.55 read from T0506.t04.many.frag # found chain 1po5A in training set T0506 68 :FFFAAGLTL 1po5A 75 :VVVLCGTDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=30986 # 1yfqA.68.25 read from T0506.t04.many.frag # found chain 1yfqA in training set Warning: unaligning (T0506)T75 (1yfqA)G33 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFFAAGL 1yfqA 26 :LLITSWD T0506 76 :L 1yfqA 34 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=30988 # 2b8nA.68.129 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)A71 (2b8nA)L121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2b8nA)S122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2b8nA)G124 because T (delta_L) conformation "forbidden" or filtered. T0506 68 :FFF 2b8nA 118 :LFL T0506 73 :G 2b8nA 123 :G T0506 75 :TL 2b8nA 125 :GS Number of specific fragments extracted= 3 number of extra gaps= 2 total=30991 # 1t0tV.68.71 read from T0506.t04.many.frag # found chain 1t0tV in training set T0506 68 :FFFAAGLTL 1t0tV 72 :FMILRPTLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=30992 # 1ty9A.69.86 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 69 :FFAAGLTLH 1ty9A 87 :FSTHAGSQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=30993 # 1xhnA.69.68 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 69 :FFAAGLTLH 1xhnA 69 :FYLSPLQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=30994 # 1efyA.69.199 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)A72 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1efyA)R865 because P (beta_P) conformation "forbidden" or filtered. T0506 69 :FFA 1efyA 861 :WHG T0506 74 :LTLH 1efyA 866 :TTNF Number of specific fragments extracted= 2 number of extra gaps= 1 total=30996 # 1vl7A.69.60 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)H77 (1vl7A)H57 because H (helix) conformation "forbidden" or filtered. T0506 69 :FFAAGLTL 1vl7A 49 :IYVSGLAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=30997 # 1t77A.69.88 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)A72 (1t77A)F2167 because E (beta_S) conformation "forbidden" or filtered. T0506 69 :FFA 1t77A 2164 :MFN T0506 73 :GLTLH 1t77A 2168 :PDPAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=30999 # 1ryiA.69.108 read from T0506.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0506)L74 (1ryiA)S101 because Y (epsilon') conformation "forbidden" or filtered. T0506 69 :FFAAG 1ryiA 96 :FKLAF T0506 75 :TLH 1ryiA 102 :EED Number of specific fragments extracted= 2 number of extra gaps= 1 total=31001 # 2furA.69.60 read from T0506.t04.many.frag # found chain 2furA in template set T0506 69 :FFAAGLTLH 2furA 60 :LHGSMKSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31002 # 2asfA.69.52 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A71 (2asfA)T55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (2asfA)G57 because P (beta_P) conformation "forbidden" or filtered. T0506 69 :FF 2asfA 53 :VI T0506 72 :A 2asfA 56 :T T0506 74 :LTLH 2asfA 58 :GSQK Number of specific fragments extracted= 3 number of extra gaps= 2 total=31005 # 1kv7A.69.111 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)T75 (1kv7A)G146 because T (delta_L) conformation "forbidden" or filtered. T0506 69 :FFAAGL 1kv7A 140 :FHPHQH T0506 76 :LH 1kv7A 147 :KT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31007 # 2f06A.69.49 read from T0506.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f06A)G47 T0506 70 :FAAGLTLH 2f06A 48 :IVSDPDKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31008 # 2f1fA.69.48 read from T0506.t04.many.frag # found chain 2f1fA in template set T0506 69 :FFAAGLTLH 2f1fA 48 :IQTVGDEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31009 # 1na6A.69.135 read from T0506.t04.many.frag # found chain 1na6A in template set Warning: unaligning (T0506)G73 (1na6A)A140 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1na6A)S141 because Y (epsilon') conformation "forbidden" or filtered. T0506 69 :FFAA 1na6A 136 :IWVC T0506 75 :TLH 1na6A 142 :TDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31011 # 1vqoM.69.132 read from T0506.t04.many.frag # found chain 1vqoM in template set T0506 69 :FFAAGLTLH 1vqoM 132 :ILIDPNHPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31012 # 2aeuA.69.175 read from T0506.t04.many.frag # found chain 2aeuA in template set Warning: unaligning (T0506)A71 (2aeuA)D178 because N (gamma') conformation "forbidden" or filtered. T0506 69 :FF 2aeuA 176 :FV T0506 72 :AGLTLH 2aeuA 179 :DASGAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31014 # 1j5wA.69.167 read from T0506.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0506)A72 (1j5wA)Y159 because E (beta_S) conformation "forbidden" or filtered. T0506 69 :FFA 1j5wA 156 :EIT T0506 73 :GLTLH 1j5wA 160 :GLERI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31016 # 1po5A.69.56 read from T0506.t04.many.frag # found chain 1po5A in training set T0506 69 :FFAAGLTLH 1po5A 76 :VVLCGTDAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31017 # 1br9.69.62 read from T0506.t04.many.frag # found chain 1br9 in template set Warning: unaligning (T0506)A71 (1br9)T65 because Y (epsilon') conformation "forbidden" or filtered. T0506 69 :FF 1br9 63 :IY T0506 72 :AGLTLH 1br9 66 :APSSAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31019 # 2b8nA.69.130 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)A72 (2b8nA)S122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2b8nA)G124 because T (delta_L) conformation "forbidden" or filtered. T0506 69 :FFA 2b8nA 119 :FLL T0506 73 :G 2b8nA 123 :G T0506 75 :TLH 2b8nA 125 :GSS Number of specific fragments extracted= 3 number of extra gaps= 2 total=31022 # 1zs9A.69.208 read from T0506.t04.many.frag # found chain 1zs9A in template set Warning: unaligning (T0506)A71 (1zs9A)T211 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1zs9A)V213 because P (beta_P) conformation "forbidden" or filtered. T0506 69 :FF 1zs9A 209 :FL T0506 72 :A 1zs9A 212 :D T0506 74 :LTLH 1zs9A 214 :TREA Number of specific fragments extracted= 3 number of extra gaps= 2 total=31025 # 1nwaA.69.29 read from T0506.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0506)A71 (1nwaA)G11 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1nwaA)C13 because P (beta_P) conformation "forbidden" or filtered. T0506 69 :FF 1nwaA 9 :LA T0506 72 :A 1nwaA 12 :G T0506 74 :LTLH 1nwaA 14 :FWGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31028 # 2bjqA.69.77 read from T0506.t04.many.frag # found chain 2bjqA in training set T0506 69 :FFAAGLTLH 2bjqA 78 :ILTATEQDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31029 # 1ylhA.69.264 read from T0506.t04.many.frag # found chain 1ylhA in template set Warning: unaligning (T0506)A72 (1ylhA)G248 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)H77 (1ylhA)G253 because T (delta_L) conformation "forbidden" or filtered. T0506 69 :FFA 1ylhA 245 :IFF T0506 73 :GLTL 1ylhA 249 :LSGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=31031 # 1k8wA.69.69 read from T0506.t04.many.frag # found chain 1k8wA in template set Warning: unaligning (T0506)A72 (1k8wA)G60 because S (epsilon) conformation "forbidden" or filtered. T0506 69 :FFA 1k8wA 57 :ICL T0506 73 :GLTLH 1k8wA 61 :EATKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=31033 # 1l3kA.69.59 read from T0506.t04.many.frag # found chain 1l3kA in training set T0506 69 :FFAAGLTLH 1l3kA 60 :VTYATVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31034 # 1jr7A.69.175 read from T0506.t04.many.frag # found chain 1jr7A in template set Warning: unaligning (T0506)H77 (1jr7A)H198 because G (3-10) conformation "forbidden" or filtered. T0506 69 :FFAAGLTL 1jr7A 190 :LLHLDDWE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31035 # 1kmvA.69.111 read from T0506.t04.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G73 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 69 :FFAA 1kmvA 112 :VWIV T0506 75 :TLH 1kmvA 118 :SSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31037 2ae0X expands to /projects/compbio/data/pdb/2ae0.pdb.gz 2ae0X:# 2ae0X.69.147 read from T0506.t04.many.frag # adding 2ae0X to template set # found chain 2ae0X in template set T0506 69 :FFAAGLTLH 2ae0X 148 :AYSNSLMDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31038 # 1wuiL.69.34 read from T0506.t04.many.frag # found chain 1wuiL in template set Warning: unaligning (T0506)G73 (1wuiL)L57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L76 (1wuiL)G60 because L (left) conformation "forbidden" or filtered. T0506 69 :FFAA 1wuiL 53 :SSST T0506 74 :LT 1wuiL 58 :FR T0506 77 :H 1wuiL 61 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=31041 # 1sf8A.69.69 read from T0506.t04.many.frag # found chain 1sf8A in template set T0506 69 :FFAAGLTLH 1sf8A 568 :FELNPDHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31042 1wv2A expands to /projects/compbio/data/pdb/1wv2.pdb.gz 1wv2A:# 1wv2A.69.139 read from T0506.t04.many.frag # adding 1wv2A to template set # found chain 1wv2A in template set Warning: unaligning (T0506)A71 (1wv2A)T1142 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1wv2A)D1144 because G (3-10) conformation "forbidden" or filtered. T0506 69 :FF 1wv2A 1140 :VY T0506 72 :A 1wv2A 1143 :S T0506 74 :LTLH 1wv2A 1145 :DPII Number of specific fragments extracted= 3 number of extra gaps= 2 total=31045 # 1ty9A.70.87 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 70 :FAAGLTLHA 1ty9A 88 :STHAGSQKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31046 # 2furA.70.61 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)A71 (2furA)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A72 (2furA)S63 because P (beta_P) conformation "forbidden" or filtered. T0506 70 :F 2furA 61 :H T0506 73 :GLTLHA 2furA 64 :MKSRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31048 # 1xhnA.70.69 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 70 :FAAGLTLHA 1xhnA 70 :YLSPLQLSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31049 # 1vl7A.70.61 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A72 (1vl7A)S52 because P (beta_P) conformation "forbidden" or filtered. T0506 70 :FA 1vl7A 50 :YV T0506 73 :GLTLHA 1vl7A 53 :GLAVHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31051 # 2asfA.70.53 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A71 (2asfA)T55 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2asfA)G58 because T (delta_L) conformation "forbidden" or filtered. T0506 70 :F 2asfA 54 :I T0506 72 :AG 2asfA 56 :TG T0506 75 :TLHA 2asfA 59 :SQKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=31054 # 1efyA.70.200 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)A72 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :FA 1efyA 862 :HG T0506 73 :GLTLHA 1efyA 865 :RTTNFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31056 # 1t77A.70.89 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)L74 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :FAAG 1t77A 2165 :FNFP T0506 75 :TLHA 1t77A 2170 :PATV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31058 # 2aeuA.70.176 read from T0506.t04.many.frag # found chain 2aeuA in template set T0506 70 :FAAGLTLHA 2aeuA 177 :VDDASGARV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31059 # 1ryiA.70.109 read from T0506.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0506)L74 (1ryiA)S101 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :FAAG 1ryiA 97 :KLAF T0506 75 :TLHA 1ryiA 102 :EEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31061 # 2f06A.70.50 read from T0506.t04.many.frag # found chain 2f06A in template set T0506 70 :FAAGLTLHA 2f06A 48 :IVSDPDKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31062 # 1kv7A.70.112 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)G73 (1kv7A)Q144 because P (beta_P) conformation "forbidden" or filtered. T0506 70 :FAA 1kv7A 141 :HPH T0506 74 :LTLHA 1kv7A 145 :HGKTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31064 # 1j5wA.70.168 read from T0506.t04.many.frag # found chain 1j5wA in template set T0506 70 :FAAGLTLHA 1j5wA 157 :ITYGLERIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31065 1onrA expands to /projects/compbio/data/pdb/1onr.pdb.gz 1onrA:# 1onrA.70.173 read from T0506.t04.many.frag # adding 1onrA to template set # found chain 1onrA in template set Warning: unaligning (T0506)A71 (1onrA)S176 because D (zeta) conformation "forbidden" or filtered. T0506 70 :F 1onrA 175 :I T0506 72 :AGLTLHA 1onrA 177 :PFVGRIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31067 # 2f1fA.70.49 read from T0506.t04.many.frag # found chain 2f1fA in template set Warning: unaligning (T0506)G73 (2f1fA)G52 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :FAA 2f1fA 49 :QTV T0506 74 :LTLHA 2f1fA 53 :DEKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31069 # 1na6A.70.136 read from T0506.t04.many.frag # found chain 1na6A in template set T0506 70 :FAAGLTLHA 1na6A 137 :WVCASTDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31070 # 1nszA.70.45 read from T0506.t04.many.frag # found chain 1nszA in training set Warning: unaligning (T0506)A71 (1nszA)G47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1nszA)D49 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1nszA)S50 because Y (epsilon') conformation "forbidden" or filtered. T0506 70 :F 1nszA 46 :L T0506 72 :A 1nszA 48 :F T0506 75 :TLHA 1nszA 51 :AKEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=31073 # 1kmvA.70.112 read from T0506.t04.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G73 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 70 :FAA 1kmvA 113 :WIV T0506 75 :TLHA 1kmvA 118 :SSVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31075 # 1flmA.70.46 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 70 :FAAGLTLHA 1flmA 47 :PVGGMHKTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31076 # 1jr7A.70.176 read from T0506.t04.many.frag # found chain 1jr7A in template set T0506 70 :FAAGLTLHA 1jr7A 191 :LHLDDWEHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31077 # 1sf8A.70.70 read from T0506.t04.many.frag # found chain 1sf8A in template set Warning: unaligning (T0506)A72 (1sf8A)N571 because N (gamma') conformation "forbidden" or filtered. T0506 70 :FA 1sf8A 569 :EL T0506 73 :GLTLHA 1sf8A 572 :PDHVLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31079 # 1u0fA.70.183 read from T0506.t04.many.frag # found chain 1u0fA in training set Warning: unaligning (T0506)A72 (1u0fA)N185 because P (beta_P) conformation "forbidden" or filtered. T0506 70 :FA 1u0fA 183 :VS T0506 73 :GLTLHA 1u0fA 186 :IDGTHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31081 # 1wuiL.70.35 read from T0506.t04.many.frag # found chain 1wuiL in template set Warning: unaligning (T0506)A72 (1wuiL)T56 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1wuiL)L57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L76 (1wuiL)G60 because L (left) conformation "forbidden" or filtered. T0506 70 :FA 1wuiL 54 :SS T0506 74 :LT 1wuiL 58 :FR T0506 77 :HA 1wuiL 61 :LE Number of specific fragments extracted= 3 number of extra gaps= 2 total=31084 # 1wv2A.70.140 read from T0506.t04.many.frag # found chain 1wv2A in template set T0506 70 :FAAGLTLHA 1wv2A 1141 :YTSDDPIIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31085 # 1s3cA.70.6 read from T0506.t04.many.frag # found chain 1s3cA in training set Warning: unaligning (T0506)A71 because of BadResidue code BAD_PEPTIDE in next template residue (1s3cA)N9 Warning: unaligning (T0506)A72 because of BadResidue code BAD_PEPTIDE at template residue (1s3cA)N9 T0506 70 :F 1s3cA 7 :Y T0506 73 :GLTLHA 1s3cA 10 :PASGTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31087 # 1vqoM.70.133 read from T0506.t04.many.frag # found chain 1vqoM in template set T0506 70 :FAAGLTLHA 1vqoM 133 :LIDPNHPAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31088 # 2c3nA.70.12 read from T0506.t04.many.frag # found chain 2c3nA in template set T0506 70 :FAAGLTLHA 2c3nA 6 :YLDLLSQPC Number of specific fragments extracted= 1 number of extra gaps= 0 total=31089 # 1z5oA.70.180 read from T0506.t04.many.frag # found chain 1z5oA in template set T0506 70 :FAAGLTLHA 1z5oA 171 :VEMEATAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31090 # 1t71A.70.9 read from T0506.t04.many.frag # found chain 1t71A in template set Warning: unaligning (T0506)L74 (1t71A)Y14 because D (zeta) conformation "forbidden" or filtered. T0506 70 :FAAG 1t71A 10 :LGDV T0506 75 :TLHA 1t71A 15 :GKAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31092 # 1nwaA.70.30 read from T0506.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0506)A72 (1nwaA)G12 because S (epsilon) conformation "forbidden" or filtered. T0506 70 :FA 1nwaA 10 :AG T0506 73 :GLTLHA 1nwaA 13 :CFWGLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31094 # 1f06A.70.167 read from T0506.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0506)A71 (1f06A)T169 because P (beta_P) conformation "forbidden" or filtered. T0506 70 :F 1f06A 168 :Y T0506 72 :AGLTLHA 1f06A 170 :LPSEDAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31096 # 1ty9A.71.88 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 71 :AAGLTLHAR 1ty9A 89 :THAGSQKGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31097 # 2furA.71.62 read from T0506.t04.many.frag # found chain 2furA in template set T0506 71 :AAGLTLHAR 2furA 62 :GSMKSRIYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31098 # 2asfA.71.54 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)A71 (2asfA)T55 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 2asfA 56 :TGGSQKAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31099 # 1vl7A.71.62 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 71 :AAGLTLHAR 1vl7A 51 :VSGLAVHTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31100 # 1xhnA.71.70 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 71 :AAGLTLHAR 1xhnA 71 :LSPLQLSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31101 # 1efyA.71.201 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)A72 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1efyA)R865 because P (beta_P) conformation "forbidden" or filtered. T0506 71 :A 1efyA 863 :G T0506 74 :LTLHAR 1efyA 866 :TTNFAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31103 # 1t77A.71.90 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)L74 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :AAG 1t77A 2166 :NFP T0506 75 :TLHAR 1t77A 2170 :PATVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31105 # 1kv7A.71.113 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)T75 (1kv7A)G146 because T (delta_L) conformation "forbidden" or filtered. T0506 71 :AAGL 1kv7A 142 :PHQH T0506 76 :LHAR 1kv7A 147 :KTGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31107 # 2aeuA.71.177 read from T0506.t04.many.frag # found chain 2aeuA in template set Warning: unaligning (T0506)A71 (2aeuA)D178 because N (gamma') conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 2aeuA 179 :DASGARVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31108 # 1onrA.71.174 read from T0506.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0506)A71 (1onrA)S176 because D (zeta) conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 1onrA 177 :PFVGRILD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31109 # 1kmvA.71.113 read from T0506.t04.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G73 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 71 :AA 1kmvA 114 :IV T0506 75 :TLHAR 1kmvA 118 :SSVYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31111 # 2f06A.71.51 read from T0506.t04.many.frag # found chain 2f06A in template set T0506 71 :AAGLTLHAR 2f06A 49 :VSDPDKAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31112 # 1flmA.71.47 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G73 (1flmA)G50 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 71 :AA 1flmA 48 :VG T0506 75 :TLHAR 1flmA 52 :HKTEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31114 # 1ryiA.71.110 read from T0506.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0506)L74 (1ryiA)S101 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :AAG 1ryiA 98 :LAF T0506 75 :TLHAR 1ryiA 102 :EEDVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31116 # 1nszA.71.46 read from T0506.t04.many.frag # found chain 1nszA in training set Warning: unaligning (T0506)A71 (1nszA)G47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1nszA)S50 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AG 1nszA 48 :FD T0506 75 :TLHAR 1nszA 51 :AKEYL Number of specific fragments extracted= 2 number of extra gaps= 2 total=31118 # 1jr7A.71.177 read from T0506.t04.many.frag # found chain 1jr7A in template set T0506 71 :AAGLTLHAR 1jr7A 192 :HLDDWEHLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31119 # 1u0fA.71.184 read from T0506.t04.many.frag # found chain 1u0fA in training set T0506 71 :AAGLTLHAR 1u0fA 184 :SNIDGTHIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31120 # 1j5wA.71.169 read from T0506.t04.many.frag # found chain 1j5wA in template set Warning: unaligning (T0506)A71 (1j5wA)T158 because E (beta_S) conformation "forbidden" or filtered. T0506 72 :AGLTLHAR 1j5wA 159 :YGLERIAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31121 # 1sf8A.71.71 read from T0506.t04.many.frag # found chain 1sf8A in template set Warning: unaligning (T0506)A72 (1sf8A)N571 because N (gamma') conformation "forbidden" or filtered. T0506 71 :A 1sf8A 570 :L T0506 73 :GLTLHAR 1sf8A 572 :PDHVLVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31123 # 1yvvA.71.105 read from T0506.t04.many.frag # found chain 1yvvA in template set T0506 71 :AAGLTLHAR 1yvvA 106 :KPGMSAITR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31124 # 1wv2A.71.141 read from T0506.t04.many.frag # found chain 1wv2A in template set Warning: unaligning (T0506)A71 (1wv2A)T1142 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1wv2A)D1144 because G (3-10) conformation "forbidden" or filtered. T0506 72 :A 1wv2A 1143 :S T0506 74 :LTLHAR 1wv2A 1145 :DPIIAR Number of specific fragments extracted= 2 number of extra gaps= 2 total=31126 # 1na6A.71.137 read from T0506.t04.many.frag # found chain 1na6A in template set Warning: unaligning (T0506)G73 (1na6A)A140 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1na6A)S141 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :AA 1na6A 138 :VC T0506 75 :TLHAR 1na6A 142 :TDEED Number of specific fragments extracted= 2 number of extra gaps= 1 total=31128 1zx8A expands to /projects/compbio/data/pdb/1zx8.pdb.gz 1zx8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 260, because occupancy 0.350 <= existing 0.650 in 1zx8A Skipped atom 262, because occupancy 0.350 <= existing 0.650 in 1zx8A Skipped atom 264, because occupancy 0.350 <= existing 0.650 in 1zx8A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zx8A.71.27 read from T0506.t04.many.frag # adding 1zx8A to template set # found chain 1zx8A in template set Warning: unaligning (T0506)A72 (1zx8A)N17 because P (beta_P) conformation "forbidden" or filtered. T0506 71 :A 1zx8A 16 :L T0506 73 :GLTLHAR 1zx8A 18 :EEYEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31130 # 2f1fA.71.50 read from T0506.t04.many.frag # found chain 2f1fA in template set Warning: unaligning (T0506)A72 (2f1fA)V51 because E (beta_S) conformation "forbidden" or filtered. T0506 71 :A 2f1fA 50 :T T0506 73 :GLTLHAR 2f1fA 52 :GDEKVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31132 # 1uscA.71.53 read from T0506.t04.many.frag # found chain 1uscA in training set T0506 71 :AAGLTLHAR 1uscA 54 :ISPKRFTHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31133 1m1hA expands to /projects/compbio/data/pdb/1m1h.pdb.gz 1m1hA:# 1m1hA.71.142 read from T0506.t04.many.frag # adding 1m1hA to template set # found chain 1m1hA in template set Warning: unaligning (T0506)G73 (1m1hA)M145 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1m1hA)N146 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :AA 1m1hA 143 :AH T0506 75 :TLHAR 1m1hA 147 :DKLLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=31135 # 1b7yA.71.176 read from T0506.t04.many.frag # found chain 1b7yA in template set T0506 71 :AAGLTLHAR 1b7yA 177 :THTSPMQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31136 # 1wuiL.71.36 read from T0506.t04.many.frag # found chain 1wuiL in template set Warning: unaligning (T0506)G73 (1wuiL)L57 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L76 (1wuiL)G60 because L (left) conformation "forbidden" or filtered. T0506 71 :AA 1wuiL 55 :ST T0506 74 :LT 1wuiL 58 :FR T0506 77 :HAR 1wuiL 61 :LEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=31139 # 1xruA.71.59 read from T0506.t04.many.frag # found chain 1xruA in template set Warning: unaligning (T0506)G73 (1xruA)V59 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1xruA)G60 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :AA 1xruA 57 :VS T0506 75 :TLHAR 1xruA 61 :GEVGK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31141 2cw6A expands to /projects/compbio/data/pdb/2cw6.pdb.gz 2cw6A:# 2cw6A.71.79 read from T0506.t04.many.frag # adding 2cw6A to template set # found chain 2cw6A in template set Warning: unaligning (T0506)G73 (2cw6A)N109 because Y (epsilon') conformation "forbidden" or filtered. T0506 71 :AA 2cw6A 107 :TP T0506 74 :LTLHAR 2cw6A 110 :LKGFEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31143 # 1ty9A.72.89 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 72 :AGLTLHARN 1ty9A 90 :HAGSQKGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31144 # 2furA.72.63 read from T0506.t04.many.frag # found chain 2furA in template set T0506 72 :AGLTLHARN 2furA 63 :SMKSRIYGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31145 # 2asfA.72.55 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G73 (2asfA)G57 because P (beta_P) conformation "forbidden" or filtered. T0506 72 :A 2asfA 56 :T T0506 74 :LTLHARN 2asfA 58 :GSQKAVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31147 # 1vl7A.72.63 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G73 (1vl7A)G53 because H (helix) conformation "forbidden" or filtered. T0506 72 :A 1vl7A 52 :S T0506 74 :LTLHARN 1vl7A 54 :LAVHTKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31149 # 1xhnA.72.71 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 72 :AGLTLHARN 1xhnA 72 :SPLQLSVSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31150 # 1kv7A.72.114 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)A72 (1kv7A)H143 because G (3-10) conformation "forbidden" or filtered. T0506 73 :GLTLHARN 1kv7A 144 :QHGKTGRQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=31151 # 1efyA.72.202 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)A72 (1efyA)S864 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1efyA)R865 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARN 1efyA 866 :TTNFAGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31152 # 2aeuA.72.178 read from T0506.t04.many.frag # found chain 2aeuA in template set T0506 72 :AGLTLHARN 2aeuA 179 :DASGARVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31153 # 1kmvA.72.114 read from T0506.t04.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G73 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 72 :A 1kmvA 115 :V T0506 75 :TLHARN 1kmvA 118 :SSVYKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31155 # 1wv2A.72.142 read from T0506.t04.many.frag # found chain 1wv2A in template set T0506 72 :AGLTLHARN 1wv2A 1143 :SDDPIIARQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31156 # 1t77A.72.91 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)L74 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AG 1t77A 2167 :FP T0506 75 :TLHARN 1t77A 2170 :PATVKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31158 # 1onrA.72.175 read from T0506.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0506)G73 (1onrA)F178 because P (beta_P) conformation "forbidden" or filtered. T0506 72 :A 1onrA 177 :P T0506 74 :LTLHARN 1onrA 179 :VGRILDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=31160 # 1ryiA.72.111 read from T0506.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0506)G73 (1ryiA)F100 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1ryiA)S101 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :A 1ryiA 99 :A T0506 75 :TLHARN 1ryiA 102 :EEDVLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31162 # 1yvvA.72.106 read from T0506.t04.many.frag # found chain 1yvvA in template set T0506 72 :AGLTLHARN 1yvvA 107 :PGMSAITRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31163 # 2f06A.72.52 read from T0506.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)G73 (2f06A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 72 :A 2f06A 50 :S T0506 74 :LTLHARN 2f06A 52 :PDKAYKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31165 # 1jr7A.72.178 read from T0506.t04.many.frag # found chain 1jr7A in template set T0506 72 :AGLTLHARN 1jr7A 193 :LDDWEHLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31166 # 1u0fA.72.185 read from T0506.t04.many.frag # found chain 1u0fA in training set T0506 72 :AGLTLHARN 1u0fA 185 :NIDGTHIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31167 # 1flmA.72.48 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 72 :AG 1flmA 49 :GG T0506 75 :TLHARN 1flmA 52 :HKTEAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31169 # 1rylA.72.8 read from T0506.t04.many.frag # found chain 1rylA in training set Warning: unaligning (T0506)G73 (1rylA)I10 because E (beta_S) conformation "forbidden" or filtered. T0506 72 :A 1rylA 9 :E T0506 74 :LTLHARN 1rylA 11 :DSEKINQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31171 # 1nszA.72.47 read from T0506.t04.many.frag # found chain 1nszA in training set Warning: unaligning (T0506)L74 (1nszA)S50 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AG 1nszA 48 :FD T0506 75 :TLHARN 1nszA 51 :AKEYLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31173 1ci4A expands to /projects/compbio/data/pdb/1ci4.pdb.gz 1ci4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ci4A.72.0 read from T0506.t04.many.frag # adding 1ci4A to template set # found chain 1ci4A in template set Warning: unaligning (T0506)A72 because first residue in template chain is (1ci4A)M1 T0506 73 :GLTLHARN 1ci4A 2 :TTSQKHRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31174 # 1uscA.72.54 read from T0506.t04.many.frag # found chain 1uscA in training set T0506 72 :AGLTLHARN 1uscA 55 :SPKRFTHGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31175 # 1m1hA.72.143 read from T0506.t04.many.frag # found chain 1m1hA in template set Warning: unaligning (T0506)L74 (1m1hA)N146 because Y (epsilon') conformation "forbidden" or filtered. T0506 72 :AG 1m1hA 144 :HM T0506 75 :TLHARN 1m1hA 147 :DKLLMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31177 # 1o66A.72.117 read from T0506.t04.many.frag # found chain 1o66A in training set T0506 72 :AGLTLHARN 1o66A 116 :VWMAETTEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31178 # 2f02A.72.164 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A72 (2f02A)D163 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (2f02A)S165 because Y (epsilon') conformation "forbidden" or filtered. T0506 73 :G 2f02A 164 :T T0506 75 :TLHARN 2f02A 166 :GDSLRQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=31180 # 1zx8A.72.28 read from T0506.t04.many.frag # found chain 1zx8A in template set T0506 72 :AGLTLHARN 1zx8A 17 :NEEYEVVKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31181 # 1m22A.72.107 read from T0506.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)G73 (1m22A)D146 because P (beta_P) conformation "forbidden" or filtered. T0506 72 :A 1m22A 145 :P T0506 74 :LTLHARN 1m22A 147 :DAYLVRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31183 # 1owlA.72.146 read from T0506.t04.many.frag # found chain 1owlA in training set T0506 72 :AGLTLHARN 1owlA 147 :SVYGPFWKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31184 # 2cb5A.72.125 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 72 :AGLTLHARN 2cb5A 127 :PEDGRLVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31185 # 1y44A.72.211 read from T0506.t04.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)A72 (1y44A)T212 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G73 (1y44A)R213 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARN 1y44A 214 :VSDKLKE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31186 # 1ty9A.73.90 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 73 :GLTLHARNM 1ty9A 91 :AGSQKGREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31187 # 2asfA.73.56 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 73 :GLTLHARNM 2asfA 57 :GGSQKAVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31188 # 1vl7A.73.64 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 73 :GLTLHARNM 1vl7A 53 :GLAVHTKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31189 # 2furA.73.64 read from T0506.t04.many.frag # found chain 2furA in template set T0506 73 :GLTLHARNM 2furA 64 :MKSRIYGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31190 # 1kv7A.73.115 read from T0506.t04.many.frag # found chain 1kv7A in training set T0506 73 :GLTLHARNM 1kv7A 144 :QHGKTGRQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31191 # 1xhnA.73.72 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 73 :GLTLHARNM 1xhnA 73 :PLQLSVSNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31192 # 1kmvA.73.115 read from T0506.t04.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)G73 because of BadResidue code BAD_PEPTIDE in next template residue (1kmvA)G117 Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 75 :TLHARNM 1kmvA 118 :SSVYKEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31193 # 1wv2A.73.143 read from T0506.t04.many.frag # found chain 1wv2A in template set Warning: unaligning (T0506)G73 (1wv2A)D1144 because G (3-10) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 1wv2A 1145 :DPIIARQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31194 # 2f06A.73.53 read from T0506.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)G73 (2f06A)D51 because D (zeta) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 2f06A 52 :PDKAYKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31195 # 1yvvA.73.107 read from T0506.t04.many.frag # found chain 1yvvA in template set T0506 73 :GLTLHARNM 1yvvA 108 :GMSAITRAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31196 # 1y44A.73.212 read from T0506.t04.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)G73 (1y44A)R213 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 1y44A 214 :VSDKLKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31197 # 1ci4A.73.1 read from T0506.t04.many.frag # found chain 1ci4A in template set T0506 73 :GLTLHARNM 1ci4A 2 :TTSQKHRDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31198 # 1flmA.73.49 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G73 (1flmA)G50 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 75 :TLHARNM 1flmA 52 :HKTEANV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31199 # 1efyA.73.203 read from T0506.t04.many.frag # found chain 1efyA in template set T0506 73 :GLTLHARNM 1efyA 865 :RTTNFAGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31200 # 1o66A.73.118 read from T0506.t04.many.frag # found chain 1o66A in training set T0506 73 :GLTLHARNM 1o66A 117 :WMAETTEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31201 # 1owlA.73.147 read from T0506.t04.many.frag # found chain 1owlA in training set T0506 73 :GLTLHARNM 1owlA 148 :VYGPFWKNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=31202 # 1rylA.73.9 read from T0506.t04.many.frag # found chain 1rylA in training set T0506 73 :GLTLHARNM 1rylA 10 :IDSEKINQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31203 # 1onrA.73.176 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 73 :GLTLHARNM 1onrA 178 :FVGRILDWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31204 # 1jr7A.73.179 read from T0506.t04.many.frag # found chain 1jr7A in template set T0506 73 :GLTLHARNM 1jr7A 194 :DDWEHLDNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31205 # 1m65A.73.47 read from T0506.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0506)H77 (1m65A)H52 because H (helix) conformation "forbidden" or filtered. T0506 73 :GLTL 1m65A 48 :PHHW T0506 78 :ARNM 1m65A 53 :FINM Number of specific fragments extracted= 2 number of extra gaps= 1 total=31207 # 2aeuA.73.179 read from T0506.t04.many.frag # found chain 2aeuA in template set T0506 73 :GLTLHARNM 2aeuA 180 :ASGARVRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31208 # 1m22A.73.108 read from T0506.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)G73 (1m22A)D146 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 1m22A 147 :DAYLVRRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31209 # 2cb5A.73.126 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 73 :GLTLHARNM 2cb5A 128 :EDGRLVQFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31210 # 1ryiA.73.112 read from T0506.t04.many.frag # found chain 1ryiA in training set Warning: unaligning (T0506)L74 (1ryiA)S101 because Y (epsilon') conformation "forbidden" or filtered. T0506 73 :G 1ryiA 100 :F T0506 75 :TLHARNM 1ryiA 102 :EEDVLQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31212 # 2f02A.73.165 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)L74 (2f02A)S165 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T75 (2f02A)G166 because S (epsilon) conformation "forbidden" or filtered. T0506 73 :G 2f02A 164 :T T0506 76 :LHARNM 2f02A 167 :DSLRQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31214 # 1xcbA.73.86 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 73 :GLTLHARNM 1xcbA 87 :GMGRLGSAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31215 # 1zp4A.73.130 read from T0506.t04.many.frag # found chain 1zp4A in template set Warning: unaligning (T0506)G73 (1zp4A)Y131 because P (beta_P) conformation "forbidden" or filtered. T0506 74 :LTLHARNM 1zp4A 132 :ASDLVTLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31216 # 1uscA.73.55 read from T0506.t04.many.frag # found chain 1uscA in training set T0506 73 :GLTLHARNM 1uscA 56 :PKRFTHGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31217 # 1jx6A.73.115 read from T0506.t04.many.frag # found chain 1jx6A in training set T0506 73 :GLTLHARNM 1jx6A 139 :RHRKFVEHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31218 # 1t77A.73.92 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)L74 (1t77A)D2169 because Y (epsilon') conformation "forbidden" or filtered. T0506 73 :G 1t77A 2168 :P T0506 75 :TLHARNM 1t77A 2170 :PATVKKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31220 # 1ty9A.74.91 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 74 :LTLHARNME 1ty9A 92 :GSQKGRELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31221 # 1vl7A.74.65 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 74 :LTLHARNME 1vl7A 54 :LAVHTKNIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31222 # 2asfA.74.57 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 74 :LTLHARNME 2asfA 58 :GSQKAVNAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31223 # 2furA.74.65 read from T0506.t04.many.frag # found chain 2furA in template set T0506 74 :LTLHARNME 2furA 65 :KSRIYGILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31224 # 1xhnA.74.73 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 74 :LTLHARNME 1xhnA 74 :LQLSVSNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31225 # 1wv2A.74.144 read from T0506.t04.many.frag # found chain 1wv2A in template set T0506 74 :LTLHARNME 1wv2A 1145 :DPIIARQLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31226 # 1kv7A.74.116 read from T0506.t04.many.frag # found chain 1kv7A in training set T0506 74 :LTLHARNME 1kv7A 145 :HGKTGRQVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31227 # 1kmvA.74.116 read from T0506.t04.many.frag # found chain 1kmvA in training set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE at template residue (1kmvA)G117 T0506 75 :TLHARNME 1kmvA 118 :SSVYKEAM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31228 # 1flmA.74.50 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)L74 (1flmA)M51 because L (left) conformation "forbidden" or filtered. T0506 75 :TLHARNME 1flmA 52 :HKTEANVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31229 # 1yvvA.74.108 read from T0506.t04.many.frag # found chain 1yvvA in template set T0506 74 :LTLHARNME 1yvvA 109 :MSAITRAMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31230 # 1rylA.74.10 read from T0506.t04.many.frag # found chain 1rylA in training set T0506 74 :LTLHARNME 1rylA 11 :DSEKINQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31231 # 1owlA.74.148 read from T0506.t04.many.frag # found chain 1owlA in training set T0506 74 :LTLHARNME 1owlA 149 :YGPFWKNWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31232 # 1m65A.74.48 read from T0506.t04.many.frag # found chain 1m65A in training set T0506 74 :LTLHARNME 1m65A 49 :HHWHFINMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31233 # 1y44A.74.213 read from T0506.t04.many.frag # found chain 1y44A in template set T0506 74 :LTLHARNME 1y44A 214 :VSDKLKELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31234 # 1ci4A.74.2 read from T0506.t04.many.frag # found chain 1ci4A in template set T0506 74 :LTLHARNME 1ci4A 3 :TSQKHRDFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31235 # 1m22A.74.109 read from T0506.t04.many.frag # found chain 1m22A in training set T0506 74 :LTLHARNME 1m22A 147 :DAYLVRRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31236 # 1ri7A.74.99 read from T0506.t04.many.frag # found chain 1ri7A in template set T0506 74 :LTLHARNME 1ri7A 100 :YSEVASNLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31237 # 1o66A.74.119 read from T0506.t04.many.frag # found chain 1o66A in training set T0506 74 :LTLHARNME 1o66A 118 :MAETTEFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31238 # 2f06A.74.54 read from T0506.t04.many.frag # found chain 2f06A in template set T0506 74 :LTLHARNME 2f06A 52 :PDKAYKALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31239 # 1ye8A.74.141 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 74 :LTLHARNME 1ye8A 142 :VHPLVKEIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31240 # 1xcbA.74.87 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 74 :LTLHARNME 1xcbA 88 :MGRLGSALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31241 # 1onrA.74.177 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 74 :LTLHARNME 1onrA 179 :VGRILDWYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31242 # 1zp4A.74.131 read from T0506.t04.many.frag # found chain 1zp4A in template set T0506 74 :LTLHARNME 1zp4A 132 :ASDLVTLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31243 # 2cb5A.74.127 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 74 :LTLHARNME 2cb5A 129 :DGRLVQFLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31244 # 1nwaA.74.34 read from T0506.t04.many.frag # found chain 1nwaA in training set T0506 74 :LTLHARNME 1nwaA 14 :FWGLQDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31245 # 1efyA.74.204 read from T0506.t04.many.frag # found chain 1efyA in template set T0506 74 :LTLHARNME 1efyA 866 :TTNFAGILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31246 # 1zr6A.74.115 read from T0506.t04.many.frag # found chain 1zr6A in template set T0506 74 :LTLHARNME 1zr6A 110 :LGYTALELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31247 # 2aeuA.74.180 read from T0506.t04.many.frag # found chain 2aeuA in template set T0506 74 :LTLHARNME 2aeuA 181 :SGARVRLLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31248 # 1r71A.74.23 read from T0506.t04.many.frag # found chain 1r71A in template set Warning: unaligning (T0506)L74 because of BadResidue code BAD_PEPTIDE at template residue (1r71A)A140 T0506 75 :TLHARNME 1r71A 141 :DQVIENLQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=31249 # 1jx6A.74.116 read from T0506.t04.many.frag # found chain 1jx6A in training set T0506 74 :LTLHARNME 1jx6A 140 :HRKFVEHVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31250 # 1ty9A.75.92 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 75 :TLHARNMET 1ty9A 93 :SQKGRELLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31251 # 1vl7A.75.66 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 75 :TLHARNMET 1vl7A 55 :AVHTKNIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31252 # 2asfA.75.58 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 75 :TLHARNMET 2asfA 59 :SQKAVNADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31253 # 1xhnA.75.74 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 75 :TLHARNMET 1xhnA 75 :QLSVSNLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31254 # 2furA.75.66 read from T0506.t04.many.frag # found chain 2furA in template set T0506 75 :TLHARNMET 2furA 66 :SRIYGILKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31255 # 1wv2A.75.145 read from T0506.t04.many.frag # found chain 1wv2A in template set T0506 75 :TLHARNMET 1wv2A 1146 :PIIARQLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31256 # 1m65A.75.49 read from T0506.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0506)H77 (1m65A)H52 because H (helix) conformation "forbidden" or filtered. T0506 75 :TL 1m65A 50 :HW T0506 78 :ARNMET 1m65A 53 :FINMRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31258 # 1flmA.75.51 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 75 :TLHARNMET 1flmA 52 :HKTEANVAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31259 # 1kmvA.75.117 read from T0506.t04.many.frag # found chain 1kmvA in training set T0506 75 :TLHARNMET 1kmvA 118 :SSVYKEAMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31260 # 1ri7A.75.100 read from T0506.t04.many.frag # found chain 1ri7A in template set T0506 75 :TLHARNMET 1ri7A 101 :SEVASNLAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31261 # 1y44A.75.214 read from T0506.t04.many.frag # found chain 1y44A in template set T0506 75 :TLHARNMET 1y44A 215 :SDKLKELAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31262 # 1yvvA.75.109 read from T0506.t04.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)T83 (1yvvA)G118 because S (epsilon) conformation "forbidden" or filtered. T0506 75 :TLHARNME 1yvvA 110 :SAITRAMR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31263 # 1rylA.75.11 read from T0506.t04.many.frag # found chain 1rylA in training set T0506 75 :TLHARNMET 1rylA 12 :SEKINQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31264 # 1owlA.75.149 read from T0506.t04.many.frag # found chain 1owlA in training set T0506 75 :TLHARNMET 1owlA 150 :GPFWKNWQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31265 # 1ye8A.75.142 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 75 :TLHARNMET 1ye8A 143 :HPLVKEIRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31266 # 1m22A.75.110 read from T0506.t04.many.frag # found chain 1m22A in training set T0506 75 :TLHARNMET 1m22A 148 :AYLVRRLRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31267 # 1ci4A.75.3 read from T0506.t04.many.frag # found chain 1ci4A in template set T0506 75 :TLHARNMET 1ci4A 4 :SQKHRDFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31268 # 1kv7A.75.117 read from T0506.t04.many.frag # found chain 1kv7A in training set T0506 75 :TLHARNMET 1kv7A 146 :GKTGRQVAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31269 # 1o66A.75.120 read from T0506.t04.many.frag # found chain 1o66A in training set T0506 75 :TLHARNMET 1o66A 119 :AETTEFLQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31270 # 1nwaA.75.35 read from T0506.t04.many.frag # found chain 1nwaA in training set T0506 75 :TLHARNMET 1nwaA 15 :WGLQDLIRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31271 # 1zp4A.75.132 read from T0506.t04.many.frag # found chain 1zp4A in template set T0506 75 :TLHARNMET 1zp4A 133 :SDLVTLLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31272 # 1xcbA.75.88 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 75 :TLHARNMET 1xcbA 89 :GRLGSALAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31273 # 1zr6A.75.116 read from T0506.t04.many.frag # found chain 1zr6A in template set T0506 75 :TLHARNMET 1zr6A 111 :GYTALELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31274 # 1rkuA.75.74 read from T0506.t04.many.frag # found chain 1rkuA in training set T0506 75 :TLHARNMET 1rkuA 74 :VEFVDWLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31275 # 2cb5A.75.128 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 75 :TLHARNMET 2cb5A 130 :GRLVQFLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31276 # 2f06A.75.55 read from T0506.t04.many.frag # found chain 2f06A in template set T0506 75 :TLHARNMET 2f06A 53 :DKAYKALKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31277 # 1onrA.75.178 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 75 :TLHARNMET 1onrA 180 :GRILDWYKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31278 1pgjA expands to /projects/compbio/data/pdb/1pgj.pdb.gz 1pgjA:# 1pgjA.75.110 read from T0506.t04.many.frag # adding 1pgjA to template set # found chain 1pgjA in template set T0506 75 :TLHARNMET 1pgjA 111 :GRRAQQLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31279 # 1pg4A.75.198 read from T0506.t04.many.frag # found chain 1pg4A in training set T0506 75 :TLHARNMET 1pg4A 199 :KKNVDDALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31280 # 1s4nA.75.163 read from T0506.t04.many.frag # found chain 1s4nA in template set T0506 75 :TLHARNMET 1s4nA 258 :YDVFKWMQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31281 # 1ty9A.76.93 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D84 (1ty9A)N102 because D (zeta) conformation "forbidden" or filtered. T0506 76 :LHARNMET 1ty9A 94 :QKGRELLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=31282 # 1vl7A.76.67 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 76 :LHARNMETD 1vl7A 56 :VHTKNIEAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31283 # 1xhnA.76.75 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 76 :LHARNMETD 1xhnA 76 :LSVSNLQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31284 # 2furA.76.67 read from T0506.t04.many.frag # found chain 2furA in template set T0506 76 :LHARNMETD 2furA 67 :RIYGILKTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31285 # 1wv2A.76.146 read from T0506.t04.many.frag # found chain 1wv2A in template set T0506 76 :LHARNMETD 1wv2A 1147 :IIARQLAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31286 # 1m65A.76.50 read from T0506.t04.many.frag # found chain 1m65A in training set T0506 76 :LHARNMETD 1m65A 51 :WHFINMRIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=31287 # 2asfA.76.59 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 76 :LHARNMETD 2asfA 60 :QKAVNADRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31288 # 1ri7A.76.101 read from T0506.t04.many.frag # found chain 1ri7A in template set T0506 76 :LHARNMETD 1ri7A 102 :EVASNLAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31289 # 1ye8A.76.143 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 76 :LHARNMETD 1ye8A 144 :PLVKEIRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31290 # 1flmA.76.52 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 76 :LHARNMETD 1flmA 53 :KTEANVARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31291 # 1kmvA.76.118 read from T0506.t04.many.frag # found chain 1kmvA in training set T0506 76 :LHARNMETD 1kmvA 119 :SVYKEAMNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31292 # 1nwaA.76.36 read from T0506.t04.many.frag # found chain 1nwaA in training set T0506 76 :LHARNMETD 1nwaA 16 :GLQDLIRNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31293 # 1yvvA.76.110 read from T0506.t04.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)T83 (1yvvA)G118 because S (epsilon) conformation "forbidden" or filtered. T0506 76 :LHARNME 1yvvA 111 :AITRAMR T0506 84 :D 1yvvA 119 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=31295 # 1y44A.76.215 read from T0506.t04.many.frag # found chain 1y44A in template set T0506 76 :LHARNMETD 1y44A 216 :DKLKELARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31296 # 1owlA.76.150 read from T0506.t04.many.frag # found chain 1owlA in training set T0506 76 :LHARNMETD 1owlA 151 :PFWKNWQAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31297 # 1rkuA.76.75 read from T0506.t04.many.frag # found chain 1rkuA in training set T0506 76 :LHARNMETD 1rkuA 75 :EFVDWLRER Number of specific fragments extracted= 1 number of extra gaps= 0 total=31298 # 1m22A.76.111 read from T0506.t04.many.frag # found chain 1m22A in training set T0506 76 :LHARNMETD 1m22A 149 :YLVRRLRDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31299 # 1rylA.76.12 read from T0506.t04.many.frag # found chain 1rylA in training set Warning: unaligning (T0506)D84 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rylA)M27 T0506 76 :LHARNMET 1rylA 13 :EKINQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31300 # 1eyqA.76.78 read from T0506.t04.many.frag # found chain 1eyqA in template set T0506 76 :LHARNMETD 1eyqA 79 :DFYRDIISG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31301 # 1xcbA.76.89 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 76 :LHARNMETD 1xcbA 90 :RLGSALADY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31302 # 1s4nA.76.164 read from T0506.t04.many.frag # found chain 1s4nA in template set T0506 76 :LHARNMETD 1s4nA 259 :DVFKWMQEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31303 # 1ci4A.76.4 read from T0506.t04.many.frag # found chain 1ci4A in template set T0506 76 :LHARNMETD 1ci4A 5 :QKHRDFVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31304 # 1zp4A.76.133 read from T0506.t04.many.frag # found chain 1zp4A in template set T0506 76 :LHARNMETD 1zp4A 134 :DLVTLLKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31305 # 1yx1A.76.115 read from T0506.t04.many.frag # found chain 1yx1A in template set T0506 76 :LHARNMETD 1yx1A 114 :ALGRRLARH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31306 # 1ualA.76.116 read from T0506.t04.many.frag # found chain 1ualA in training set T0506 76 :LHARNMETD 1ualA 97 :GGVTELAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31307 # 1ufaA.76.369 read from T0506.t04.many.frag # found chain 1ufaA in template set T0506 76 :LHARNMETD 1ufaA 370 :AVLRLLAQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31308 # 1pgjA.76.111 read from T0506.t04.many.frag # found chain 1pgjA in template set T0506 76 :LHARNMETD 1pgjA 112 :RRAQQLEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31309 # 1yt3A.76.63 read from T0506.t04.many.frag # found chain 1yt3A in template set T0506 76 :LHARNMETD 1yt3A 64 :SPLKAILRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31310 # 1v0jA.76.205 read from T0506.t04.many.frag # found chain 1v0jA in template set T0506 76 :LHARNMETD 1v0jA 206 :AWLQNMAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31311 # 1fyeA.76.21 read from T0506.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0506)D84 (1fyeA)G30 because T (delta_L) conformation "forbidden" or filtered. T0506 76 :LHARNMET 1fyeA 22 :PLIANQLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=31312 # 1vl7A.77.68 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)H77 (1vl7A)H57 because H (helix) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1vl7A 58 :TKNIEANP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31313 # 1xhnA.77.76 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 77 :HARNMETDA 1xhnA 77 :SVSNLQENP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31314 # 1ty9A.77.94 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 77 :HARNMETDA 1ty9A 95 :KGRELLHNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31315 # 2furA.77.68 read from T0506.t04.many.frag # found chain 2furA in template set T0506 77 :HARNMETDA 2furA 68 :IYGILKTGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31316 # 1ri7A.77.102 read from T0506.t04.many.frag # found chain 1ri7A in template set T0506 77 :HARNMETDA 1ri7A 103 :VASNLAKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31317 # 1m65A.77.51 read from T0506.t04.many.frag # found chain 1m65A in training set Warning: unaligning (T0506)H77 (1m65A)H52 because H (helix) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1m65A 53 :FINMRIWP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31318 # 1nwaA.77.37 read from T0506.t04.many.frag # found chain 1nwaA in training set T0506 77 :HARNMETDA 1nwaA 17 :LQDLIRNQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31319 # 1ye8A.77.144 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 77 :HARNMETDA 1ye8A 145 :LVKEIRRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31320 # 1flmA.77.53 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 77 :HARNMETDA 1flmA 54 :TEANVARDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31321 # 1y44A.77.216 read from T0506.t04.many.frag # found chain 1y44A in template set T0506 77 :HARNMETDA 1y44A 217 :KLKELARDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=31322 # 2asfA.77.60 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 77 :HARNMETDA 2asfA 61 :KAVNADRSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31323 # 1rkuA.77.76 read from T0506.t04.many.frag # found chain 1rkuA in training set Warning: unaligning (T0506)A85 (1rkuA)F84 because Y (epsilon') conformation "forbidden" or filtered. T0506 77 :HARNMETD 1rkuA 76 :FVDWLRER Number of specific fragments extracted= 1 number of extra gaps= 1 total=31324 # 1yvvA.77.111 read from T0506.t04.many.frag # found chain 1yvvA in template set T0506 77 :HARNMETDA 1yvvA 112 :ITRAMRGDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31325 # 1wv2A.77.147 read from T0506.t04.many.frag # found chain 1wv2A in template set Warning: unaligning (T0506)A85 (1wv2A)G1156 because S (epsilon) conformation "forbidden" or filtered. T0506 77 :HARNMETD 1wv2A 1148 :IARQLAEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=31326 # 1kmvA.77.119 read from T0506.t04.many.frag # found chain 1kmvA in training set T0506 77 :HARNMETDA 1kmvA 120 :VYKEAMNHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31327 # 1owlA.77.151 read from T0506.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0506)D84 (1owlA)Q159 because P (beta_P) conformation "forbidden" or filtered. T0506 77 :HARNMET 1owlA 152 :FWKNWQA T0506 85 :A 1owlA 160 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=31329 # 1ualA.77.117 read from T0506.t04.many.frag # found chain 1ualA in training set T0506 77 :HARNMETDA 1ualA 98 :GVTELAQNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31330 # 1m22A.77.112 read from T0506.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)A85 (1m22A)G158 because T (delta_L) conformation "forbidden" or filtered. T0506 77 :HARNMETD 1m22A 150 :LVRRLRDA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31331 # 1xcbA.77.90 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 77 :HARNMETDA 1xcbA 91 :LGSALADYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31332 # 1n3lA.77.58 read from T0506.t04.many.frag # found chain 1n3lA in training set T0506 77 :HARNMETDA 1n3lA 59 :IADFLKAGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=31333 # 1eyqA.77.79 read from T0506.t04.many.frag # found chain 1eyqA in template set T0506 77 :HARNMETDA 1eyqA 80 :FYRDIISGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31334 # 1ufaA.77.370 read from T0506.t04.many.frag # found chain 1ufaA in template set T0506 77 :HARNMETDA 1ufaA 371 :VLRLLAQNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31335 # 1s4nA.77.165 read from T0506.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0506)A85 (1s4nA)E268 because L (left) conformation "forbidden" or filtered. T0506 77 :HARNMETD 1s4nA 260 :VFKWMQEN Number of specific fragments extracted= 1 number of extra gaps= 1 total=31336 # 1f74A.77.149 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 77 :HARNMETDA 1f74A 150 :QFGELYKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31337 # 1yt3A.77.64 read from T0506.t04.many.frag # found chain 1yt3A in template set T0506 77 :HARNMETDA 1yt3A 65 :PLKAILRDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31338 # 1us0A.77.165 read from T0506.t04.many.frag # found chain 1us0A in training set T0506 77 :HARNMETDA 1us0A 165 :QVEMILNKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31339 # 1e9rA.77.328 read from T0506.t04.many.frag # found chain 1e9rA in template set T0506 77 :HARNMETDA 1e9rA 399 :EAQTLRASF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31340 # 1pgjA.77.112 read from T0506.t04.many.frag # found chain 1pgjA in template set T0506 77 :HARNMETDA 1pgjA 113 :RAQQLEAAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31341 # 1rylA.77.13 read from T0506.t04.many.frag # found chain 1rylA in training set Warning: unaligning (T0506)D84 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rylA)M27 T0506 77 :HARNMET 1rylA 14 :KINQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31342 # 1fyeA.77.22 read from T0506.t04.many.frag # found chain 1fyeA in training set Warning: unaligning (T0506)M81 (1fyeA)Q27 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T83 (1fyeA)N29 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D84 (1fyeA)G30 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1fyeA)R31 because P (beta_P) conformation "forbidden" or filtered. T0506 77 :HARN 1fyeA 23 :LIAN T0506 82 :E 1fyeA 28 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=31344 # 1ty9A.78.95 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D84 (1ty9A)N102 because D (zeta) conformation "forbidden" or filtered. T0506 78 :ARNMET 1ty9A 96 :GRELLH T0506 85 :AR 1ty9A 103 :PW Number of specific fragments extracted= 2 number of extra gaps= 1 total=31346 # 1vl7A.78.69 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 78 :ARNMETDAR 1vl7A 58 :TKNIEANPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31347 # 1xhnA.78.77 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)R86 (1xhnA)Y86 because P (beta_P) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1xhnA 78 :VSNLQENP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31348 # 1flmA.78.54 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)D84 (1flmA)D61 because D (zeta) conformation "forbidden" or filtered. T0506 78 :ARNMET 1flmA 55 :EANVAR T0506 85 :AR 1flmA 62 :ER Number of specific fragments extracted= 2 number of extra gaps= 1 total=31350 # 1ualA.78.118 read from T0506.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0506)D84 (1ualA)N105 because P (beta_P) conformation "forbidden" or filtered. T0506 78 :ARNMET 1ualA 99 :VTELAQ T0506 85 :AR 1ualA 106 :QK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31352 # 2furA.78.69 read from T0506.t04.many.frag # found chain 2furA in template set T0506 78 :ARNMETDAR 2furA 69 :YGILKTGQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31353 # 1nwaA.78.38 read from T0506.t04.many.frag # found chain 1nwaA in training set Warning: unaligning (T0506)R86 (1nwaA)G26 because T (delta_L) conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1nwaA 18 :QDLIRNQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31354 # 1y44A.78.217 read from T0506.t04.many.frag # found chain 1y44A in template set T0506 78 :ARNMETDAR 1y44A 218 :LKELARDCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31355 # 1ye8A.78.145 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 78 :ARNMETDAR 1ye8A 146 :VKEIRRLPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31356 # 1fo8A.78.123 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 78 :ARNMETDAR 1fo8A 228 :YPLLKADPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31357 # 1f74A.78.150 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 78 :ARNMETDAR 1f74A 151 :FGELYKNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31358 # 1ufaA.78.371 read from T0506.t04.many.frag # found chain 1ufaA in template set T0506 78 :ARNMETDAR 1ufaA 372 :LRLLAQNPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31359 # 1yvvA.78.112 read from T0506.t04.many.frag # found chain 1yvvA in template set Warning: unaligning (T0506)T83 (1yvvA)G118 because S (epsilon) conformation "forbidden" or filtered. T0506 78 :ARNME 1yvvA 113 :TRAMR T0506 84 :DAR 1yvvA 119 :DMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31361 # 1ri7A.78.103 read from T0506.t04.many.frag # found chain 1ri7A in template set T0506 78 :ARNMETDAR 1ri7A 104 :ASNLAKYPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31362 # 1rkuA.78.77 read from T0506.t04.many.frag # found chain 1rkuA in training set Warning: unaligning (T0506)A85 (1rkuA)F84 because Y (epsilon') conformation "forbidden" or filtered. T0506 78 :ARNMETD 1rkuA 77 :VDWLRER T0506 86 :R 1rkuA 85 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=31364 # 1wv2A.78.148 read from T0506.t04.many.frag # found chain 1wv2A in template set T0506 78 :ARNMETDAR 1wv2A 1149 :ARQLAEIGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=31365 # 1yt3A.78.65 read from T0506.t04.many.frag # found chain 1yt3A in template set T0506 78 :ARNMETDAR 1yt3A 66 :LKAILRDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31366 # 1m65A.78.52 read from T0506.t04.many.frag # found chain 1m65A in training set T0506 78 :ARNMETDAR 1m65A 53 :FINMRIWPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31367 # 1m22A.78.113 read from T0506.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)A85 (1m22A)G158 because T (delta_L) conformation "forbidden" or filtered. T0506 78 :ARNMETD 1m22A 151 :VRRLRDA T0506 86 :R 1m22A 159 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=31369 # 1v84A.78.123 read from T0506.t04.many.frag # found chain 1v84A in template set T0506 78 :ARNMETDAR 1v84A 205 :FEEMRSTRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31370 # 1rjdA.78.89 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 78 :ARNMETDAR 1rjdA 90 :LEFLVANEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31371 # 1eyqA.78.80 read from T0506.t04.many.frag # found chain 1eyqA in template set Warning: unaligning (T0506)R86 (1eyqA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0506 78 :ARNMETDA 1eyqA 81 :YRDIISGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31372 # 1n3lA.78.59 read from T0506.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0506)D84 (1n3lA)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 78 :ARNMET 1n3lA 60 :ADFLKA T0506 85 :AR 1n3lA 67 :CE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31374 # 1kmvA.78.120 read from T0506.t04.many.frag # found chain 1kmvA in training set T0506 78 :ARNMETDAR 1kmvA 121 :YKEAMNHPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31375 # 1e9rA.78.329 read from T0506.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0506)A85 (1e9rA)F407 because E (beta_S) conformation "forbidden" or filtered. T0506 78 :ARNMETD 1e9rA 400 :AQTLRAS T0506 86 :R 1e9rA 408 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31377 # 1s4nA.78.166 read from T0506.t04.many.frag # found chain 1s4nA in template set T0506 78 :ARNMETDAR 1s4nA 261 :FKWMQENEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31378 # 1qopB.78.60 read from T0506.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)A85 (1qopB)T69 because E (beta_S) conformation "forbidden" or filtered. T0506 78 :ARNMETD 1qopB 62 :CQNITAG T0506 86 :R 1qopB 70 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31380 # 1owlA.78.152 read from T0506.t04.many.frag # found chain 1owlA in training set Warning: unaligning (T0506)D84 (1owlA)Q159 because P (beta_P) conformation "forbidden" or filtered. T0506 78 :ARNMET 1owlA 153 :WKNWQA T0506 85 :AR 1owlA 160 :PK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31382 # 1xcbA.78.91 read from T0506.t04.many.frag # found chain 1xcbA in template set T0506 78 :ARNMETDAR 1xcbA 92 :GSALADYPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31383 # 2asfA.78.61 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 78 :ARNMETDAR 2asfA 62 :AVNADRSGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31384 # 1flmA.79.55 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 79 :RNMETDARI 1flmA 56 :ANVARDERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31385 # 1ty9A.79.96 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 79 :RNMETDARI 1ty9A 97 :RELLHNPWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31386 # 1vl7A.79.70 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D84 (1vl7A)N64 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1vl7A)L66 because P (beta_P) conformation "forbidden" or filtered. T0506 79 :RNMET 1vl7A 59 :KNIEA T0506 85 :A 1vl7A 65 :P T0506 87 :I 1vl7A 67 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=31389 # 1xhnA.79.78 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 79 :RNMETDARI 1xhnA 79 :SNLQENPYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31390 # 1fo8A.79.124 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 79 :RNMETDARI 1fo8A 229 :PLLKADPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31391 # 1f74A.79.151 read from T0506.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)D84 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. T0506 79 :RNMET 1f74A 152 :GELYK T0506 85 :ARI 1f74A 158 :PKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31393 # 1ufaA.79.372 read from T0506.t04.many.frag # found chain 1ufaA in template set T0506 79 :RNMETDARI 1ufaA 373 :RLLAQNPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31394 # 1ualA.79.119 read from T0506.t04.many.frag # found chain 1ualA in training set T0506 79 :RNMETDARI 1ualA 100 :TELAQNQKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31395 # 1rjdA.79.90 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 79 :RNMETDARI 1rjdA 91 :EFLVANEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31396 # 1yt3A.79.66 read from T0506.t04.many.frag # found chain 1yt3A in template set Warning: unaligning (T0506)R86 (1yt3A)S74 because G (3-10) conformation "forbidden" or filtered. T0506 79 :RNMETDA 1yt3A 67 :KAILRDP T0506 87 :I 1yt3A 75 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31398 # 1ri7A.79.104 read from T0506.t04.many.frag # found chain 1ri7A in template set Warning: unaligning (T0506)D84 (1ri7A)Y110 because P (beta_P) conformation "forbidden" or filtered. T0506 79 :RNMET 1ri7A 105 :SNLAK T0506 85 :ARI 1ri7A 111 :PEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31400 # 1eyqA.79.81 read from T0506.t04.many.frag # found chain 1eyqA in template set Warning: unaligning (T0506)D84 (1eyqA)G87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1eyqA)F89 because Y (epsilon') conformation "forbidden" or filtered. T0506 79 :RNMET 1eyqA 82 :RDIIS T0506 85 :A 1eyqA 88 :P T0506 87 :I 1eyqA 90 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=31403 # 1fiqB.79.27 read from T0506.t04.many.frag # found chain 1fiqB in template set T0506 79 :RNMETDARI 1fiqB 247 :DLKAQHPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31404 # 1tr9A.79.18 read from T0506.t04.many.frag # found chain 1tr9A in training set T0506 79 :RNMETDARI 1tr9A 18 :REILQHPTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31405 # 1qopB.79.61 read from T0506.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)D84 (1qopB)G68 because T (delta_L) conformation "forbidden" or filtered. T0506 79 :RNMET 1qopB 63 :QNITA T0506 85 :ARI 1qopB 69 :TRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31407 # 1nwaA.79.39 read from T0506.t04.many.frag # found chain 1nwaA in training set T0506 79 :RNMETDARI 1nwaA 19 :DLIRNQPGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31408 # 1y44A.79.218 read from T0506.t04.many.frag # found chain 1y44A in template set Warning: unaligning (T0506)D84 (1y44A)D224 because L (left) conformation "forbidden" or filtered. T0506 79 :RNMET 1y44A 219 :KELAR T0506 85 :ARI 1y44A 225 :CDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31410 # 2furA.79.70 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)D84 (2furA)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 79 :RNMET 2furA 70 :GILKT T0506 85 :ARI 2furA 76 :QLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31412 # 1s4nA.79.167 read from T0506.t04.many.frag # found chain 1s4nA in template set T0506 79 :RNMETDARI 1s4nA 262 :KWMQENEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31413 1zedA expands to /projects/compbio/data/pdb/1zed.pdb.gz 1zedA:# 1zedA.79.296 read from T0506.t04.many.frag # adding 1zedA to template set # found chain 1zedA in template set Warning: unaligning (T0506)I87 (1zedA)G305 because S (epsilon) conformation "forbidden" or filtered. T0506 79 :RNMETDAR 1zedA 297 :RLLSRNPR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31414 # 1qhtA.79.97 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 79 :RNMETDARI 1qhtA 98 :DRIRAHPAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31415 # 1qwnA.79.115 read from T0506.t04.many.frag # found chain 1qwnA in training set T0506 79 :RNMETDARI 1qwnA 116 :RHLHDNPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31416 # 1ye8A.79.146 read from T0506.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0506)R86 (1ye8A)G154 because T (delta_L) conformation "forbidden" or filtered. T0506 79 :RNMETDA 1ye8A 147 :KEIRRLP T0506 87 :I 1ye8A 155 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=31418 # 1n3lA.79.60 read from T0506.t04.many.frag # found chain 1n3lA in training set Warning: unaligning (T0506)D84 (1n3lA)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 79 :RNMET 1n3lA 61 :DFLKA T0506 85 :ARI 1n3lA 67 :CEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31420 # 1m22A.79.114 read from T0506.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)A85 (1m22A)G158 because T (delta_L) conformation "forbidden" or filtered. T0506 79 :RNMETD 1m22A 152 :RRLRDA T0506 86 :RI 1m22A 159 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31422 # 1uarA.79.15 read from T0506.t04.many.frag # found chain 1uarA in training set T0506 79 :RNMETDARI 1uarA 16 :QEHLEDPKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31423 # 1v84A.79.124 read from T0506.t04.many.frag # found chain 1v84A in template set T0506 79 :RNMETDARI 1v84A 206 :EEMRSTRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31424 1xeaA expands to /projects/compbio/data/pdb/1xea.pdb.gz 1xeaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xeaA.79.19 read from T0506.t04.many.frag # adding 1xeaA to template set # found chain 1xeaA in template set Warning: unaligning (T0506)R86 (1xeaA)D27 because L (left) conformation "forbidden" or filtered. T0506 79 :RNMETDA 1xeaA 20 :PVLAQWP T0506 87 :I 1xeaA 28 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31426 # 1e9rA.79.330 read from T0506.t04.many.frag # found chain 1e9rA in template set T0506 79 :RNMETDARI 1e9rA 401 :QTLRASFRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31427 # 1ovnA.79.27 read from T0506.t04.many.frag # found chain 1ovnA in template set T0506 79 :RNMETDARI 1ovnA 37 :KTVERFPYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31428 # 1ty9A.80.97 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 80 :NMETDARIS 1ty9A 98 :ELLHNPWAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31429 # 1vl7A.80.71 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A85 (1vl7A)P65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1vl7A)L66 because P (beta_P) conformation "forbidden" or filtered. T0506 80 :NMETD 1vl7A 60 :NIEAN T0506 87 :IS 1vl7A 67 :VN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31431 # 1xhnA.80.79 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D84 (1xhnA)N84 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)I87 (1xhnA)A87 because Y (epsilon') conformation "forbidden" or filtered. T0506 80 :NMET 1xhnA 80 :NLQE T0506 85 :AR 1xhnA 85 :PY T0506 88 :S 1xhnA 88 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=31434 # 1f74A.80.152 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 80 :NMETDARIS 1f74A 153 :ELYKNPKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31435 # 1fo8A.80.125 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)S88 (1fo8A)W238 because G (3-10) conformation "forbidden" or filtered. T0506 80 :NMETDARI 1fo8A 230 :LLKADPSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31436 # 1flmA.80.56 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R86 (1flmA)R63 because P (beta_P) conformation "forbidden" or filtered. T0506 80 :NMETDA 1flmA 57 :NVARDE T0506 87 :IS 1flmA 64 :VL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31438 # 1rjdA.80.91 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 80 :NMETDARIS 1rjdA 92 :FLVANEKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31439 # 1yt3A.80.67 read from T0506.t04.many.frag # found chain 1yt3A in template set T0506 80 :NMETDARIS 1yt3A 68 :AILRDPSIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31440 # 1fiqB.80.28 read from T0506.t04.many.frag # found chain 1fiqB in template set T0506 80 :NMETDARIS 1fiqB 248 :LKAQHPEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31441 # 1ualA.80.120 read from T0506.t04.many.frag # found chain 1ualA in training set T0506 80 :NMETDARIS 1ualA 101 :ELAQNQKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31442 # 1ufaA.80.373 read from T0506.t04.many.frag # found chain 1ufaA in template set Warning: unaligning (T0506)D84 (1ufaA)N378 because P (beta_P) conformation "forbidden" or filtered. T0506 80 :NMET 1ufaA 374 :LLAQ T0506 85 :ARIS 1ufaA 379 :PKVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31444 # 1qwnA.80.116 read from T0506.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0506)D84 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. T0506 80 :NMET 1qwnA 117 :HLHD T0506 85 :ARIS 1qwnA 122 :PEMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31446 # 1oi0A.80.85 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)A85 (1oi0A)G91 because S (epsilon) conformation "forbidden" or filtered. T0506 80 :NMETD 1oi0A 86 :LFTRF T0506 86 :RIS 1oi0A 92 :KYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=31448 # 1y44A.80.219 read from T0506.t04.many.frag # found chain 1y44A in template set T0506 80 :NMETDARIS 1y44A 220 :ELARDCDVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31449 # 1uarA.80.16 read from T0506.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)R86 (1uarA)K23 because G (3-10) conformation "forbidden" or filtered. T0506 80 :NMETDA 1uarA 17 :EHLEDP T0506 87 :IS 1uarA 24 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31451 # 1qopB.80.62 read from T0506.t04.many.frag # found chain 1qopB in training set T0506 80 :NMETDARIS 1qopB 64 :NITAGTRTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31452 # 1s4nA.80.168 read from T0506.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0506)A85 (1s4nA)E268 because L (left) conformation "forbidden" or filtered. T0506 80 :NMETD 1s4nA 263 :WMQEN T0506 86 :RIS 1s4nA 269 :KVY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31454 # 1q52A.80.141 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 80 :NMETDARIS 1q52A 142 :LIRFMPKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31455 # 1zedA.80.297 read from T0506.t04.many.frag # found chain 1zedA in template set T0506 80 :NMETDARIS 1zedA 298 :LLSRNPRGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31456 # 1n3lA.80.61 read from T0506.t04.many.frag # found chain 1n3lA in training set T0506 80 :NMETDARIS 1n3lA 62 :FLKAGCEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31457 # 1tr9A.80.19 read from T0506.t04.many.frag # found chain 1tr9A in training set T0506 80 :NMETDARIS 1tr9A 19 :EILQHPTVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31458 # 1sr9A.80.156 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)T83 (1sr9A)G160 because T (delta_L) conformation "forbidden" or filtered. T0506 80 :NME 1sr9A 157 :ACS T0506 84 :DARIS 1sr9A 161 :APRAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31460 # 1e9rA.80.331 read from T0506.t04.many.frag # found chain 1e9rA in template set T0506 80 :NMETDARIS 1e9rA 402 :TLRASFRSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31461 # 1m22A.80.115 read from T0506.t04.many.frag # found chain 1m22A in training set Warning: unaligning (T0506)S88 (1m22A)V161 because P (beta_P) conformation "forbidden" or filtered. T0506 80 :NMETDARI 1m22A 153 :RLRDAGAV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31462 # 1ovnA.80.28 read from T0506.t04.many.frag # found chain 1ovnA in template set T0506 80 :NMETDARIS 1ovnA 38 :TVERFPYSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31463 # 1qhtA.80.98 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 80 :NMETDARIS 1qhtA 99 :RIRAHPAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31464 # 1ri7A.80.105 read from T0506.t04.many.frag # found chain 1ri7A in template set T0506 80 :NMETDARIS 1ri7A 106 :NLAKYPEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31465 1o65A expands to /projects/compbio/data/pdb/1o65.pdb.gz 1o65A:# 1o65A.80.146 read from T0506.t04.many.frag # adding 1o65A to template set # found chain 1o65A in template set T0506 80 :NMETDARIS 1o65A 145 :LMQNTGKVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31466 # 1j9lA.80.21 read from T0506.t04.many.frag # found chain 1j9lA in template set T0506 80 :NMETDARIS 1j9lA 22 :LLSEEHEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31467 # 1lvaA.80.39 read from T0506.t04.many.frag # found chain 1lvaA in template set T0506 80 :NMETDARIS 1lvaA 416 :SMAAAGQVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31468 # 1f74A.81.153 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 81 :METDARISV 1f74A 154 :LYKNPKVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31469 # 1xhnA.81.80 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D84 (1xhnA)N84 because D (zeta) conformation "forbidden" or filtered. T0506 81 :MET 1xhnA 81 :LQE T0506 85 :ARISV 1xhnA 85 :PYATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31471 # 1sr9A.81.157 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)T83 (1sr9A)G160 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1sr9A)R163 because Y (epsilon') conformation "forbidden" or filtered. T0506 81 :ME 1sr9A 158 :CS T0506 84 :DA 1sr9A 161 :AP T0506 87 :ISV 1sr9A 164 :AIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31474 # 1ty9A.81.98 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 81 :METDARISV 1ty9A 99 :LLHNPWASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31475 # 1fo8A.81.126 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 81 :METDARISV 1fo8A 231 :LKADPSLWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=31476 # 1vl7A.81.72 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 81 :METDARISV 1vl7A 61 :IEANPLVNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31477 # 1flmA.81.57 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 81 :METDARISV 1flmA 58 :VARDERVLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=31478 # 1uarA.81.17 read from T0506.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)M81 (1uarA)H18 because G (3-10) conformation "forbidden" or filtered. T0506 82 :ETDARISV 1uarA 19 :LEDPKVRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31479 # 1yt3A.81.68 read from T0506.t04.many.frag # found chain 1yt3A in template set Warning: unaligning (T0506)S88 (1yt3A)T76 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :METDARI 1yt3A 69 :ILRDPSI T0506 89 :V 1yt3A 77 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=31481 # 1rjdA.81.92 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 81 :METDARISV 1rjdA 93 :LVANEKVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31482 # 1ualA.81.121 read from T0506.t04.many.frag # found chain 1ualA in training set Warning: unaligning (T0506)D84 (1ualA)N105 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :MET 1ualA 102 :LAQ T0506 85 :ARISV 1ualA 106 :QKLIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31484 # 1ovnA.81.29 read from T0506.t04.many.frag # found chain 1ovnA in template set T0506 81 :METDARISV 1ovnA 39 :VERFPYSVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31485 # 1fiqB.81.29 read from T0506.t04.many.frag # found chain 1fiqB in template set T0506 81 :METDARISV 1fiqB 249 :KAQHPEAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31486 # 1qopB.81.63 read from T0506.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)D84 (1qopB)G68 because T (delta_L) conformation "forbidden" or filtered. T0506 81 :MET 1qopB 65 :ITA T0506 85 :ARISV 1qopB 69 :TRTTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31488 # 1v84A.81.126 read from T0506.t04.many.frag # found chain 1v84A in template set Warning: unaligning (T0506)D84 (1v84A)T211 because P (beta_P) conformation "forbidden" or filtered. T0506 81 :MET 1v84A 208 :MRS T0506 85 :ARISV 1v84A 212 :RRVSV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31490 # 1zedA.81.298 read from T0506.t04.many.frag # found chain 1zedA in template set T0506 81 :METDARISV 1zedA 299 :LSRNPRGFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31491 # 1qwnA.81.117 read from T0506.t04.many.frag # found chain 1qwnA in training set Warning: unaligning (T0506)D84 (1qwnA)N121 because D (zeta) conformation "forbidden" or filtered. T0506 81 :MET 1qwnA 118 :LHD T0506 85 :ARISV 1qwnA 122 :PEMKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=31493 # 1lc5A.81.201 read from T0506.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0506)R86 (1lc5A)H207 because G (3-10) conformation "forbidden" or filtered. T0506 81 :METDA 1lc5A 202 :LKDNP T0506 87 :ISV 1lc5A 208 :IWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31495 # 1q52A.81.142 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 81 :METDARISV 1q52A 143 :IRFMPKVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31496 # 1tr9A.81.20 read from T0506.t04.many.frag # found chain 1tr9A in training set Warning: unaligning (T0506)V89 (1tr9A)G28 because Y (epsilon') conformation "forbidden" or filtered. T0506 81 :METDARIS 1tr9A 20 :ILQHPTVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31497 # 1uscA.81.63 read from T0506.t04.many.frag # found chain 1uscA in training set T0506 81 :METDARISV 1uscA 64 :LLKARRFSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31498 # 1xeaA.81.21 read from T0506.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0506)R86 (1xeaA)D27 because L (left) conformation "forbidden" or filtered. T0506 81 :METDA 1xeaA 22 :LAQWP T0506 87 :ISV 1xeaA 28 :IEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31500 # 1o65A.81.147 read from T0506.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0506)A85 (1o65A)G150 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (1o65A)G153 because S (epsilon) conformation "forbidden" or filtered. T0506 81 :METD 1o65A 146 :MQNT T0506 86 :RI 1o65A 151 :KV T0506 89 :V 1o65A 154 :W Number of specific fragments extracted= 3 number of extra gaps= 2 total=31503 # 1h1nA.81.119 read from T0506.t04.many.frag # found chain 1h1nA in training set T0506 81 :METDARISV 1h1nA 120 :FASNPLVIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31504 # 1oi0A.81.86 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)D84 (1oi0A)F90 because Y (epsilon') conformation "forbidden" or filtered. T0506 81 :MET 1oi0A 87 :FTR T0506 85 :ARISV 1oi0A 91 :GKYHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31506 2c1lA expands to /projects/compbio/data/pdb/2c1l.pdb.gz 2c1lA:Skipped atom 2, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 4, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 6, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 8, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 10, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 12, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 14, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 16, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 240, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 242, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 244, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 246, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 248, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 250, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 252, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 254, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 324, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 326, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 328, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 330, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 332, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 334, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 336, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 338, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 486, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 488, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 490, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 492, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 494, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 496, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 498, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 500, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 502, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 661, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 662, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 664, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 665, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 667, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 668, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 670, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 671, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 673, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 674, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 676, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 677, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 679, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 680, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 682, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 683, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 685, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 686, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 688, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 689, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 691, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 692, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 976, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 978, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 980, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 982, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 984, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 986, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1075, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1077, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1079, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1081, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1083, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1085, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1140, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1142, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1144, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1146, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1148, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1150, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1152, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1154, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1180, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1182, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1184, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1186, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1188, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1190, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1192, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1194, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1268, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1270, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1272, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1274, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1276, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1278, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1280, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1282, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1356, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1358, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1360, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1362, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1364, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1366, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1368, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1370, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1422, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1424, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1426, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1428, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1430, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1432, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1434, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1436, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1478, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1480, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1482, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1484, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1486, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1488, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1515, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1517, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1519, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1521, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1523, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1525, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1527, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1529, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1919, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1921, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1923, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1925, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1927, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1929, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1931, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1933, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 1935, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2548, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2550, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2552, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2554, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2556, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2558, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2560, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2562, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2564, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2566, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2568, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2570, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2572, because occupancy 0.330 <= existing 0.330 in 2c1lA Skipped atom 2574, because occupancy 0.330 <= existing 0.330 in 2c1lA # 2c1lA.81.60 read from T0506.t04.many.frag # adding 2c1lA to template set # found chain 2c1lA in template set Warning: unaligning (T0506)D84 (2c1lA)G64 because T (delta_L) conformation "forbidden" or filtered. T0506 81 :MET 2c1lA 61 :INQ T0506 85 :ARISV 2c1lA 65 :GRVIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31508 # 1ufaA.81.374 read from T0506.t04.many.frag # found chain 1ufaA in template set T0506 81 :METDARISV 1ufaA 375 :LAQNPKVRP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31509 # 1j9lA.81.22 read from T0506.t04.many.frag # found chain 1j9lA in template set T0506 81 :METDARISV 1j9lA 23 :LSEEHEVFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31510 # 1p30A.81.277 read from T0506.t04.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)T83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1p30A)L279 Warning: unaligning (T0506)D84 (1p30A)T280 because P (beta_P) conformation "forbidden" or filtered. T0506 85 :ARISV 1p30A 281 :PKVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31511 # 1s4nA.81.169 read from T0506.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0506)A85 (1s4nA)E268 because L (left) conformation "forbidden" or filtered. T0506 81 :METD 1s4nA 264 :MQEN T0506 86 :RISV 1s4nA 269 :KVYG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31513 # 1ty9A.82.99 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 82 :ETDARISVT 1ty9A 100 :LHNPWASGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31514 # 1vl7A.82.73 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 82 :ETDARISVT 1vl7A 62 :EANPLVNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31515 # 1xhnA.82.81 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 82 :ETDARISVT 1xhnA 82 :QENPYATLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31516 # 1uarA.82.18 read from T0506.t04.many.frag # found chain 1uarA in training set T0506 82 :ETDARISVT 1uarA 19 :LEDPKVRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31517 # 1lc5A.82.202 read from T0506.t04.many.frag # found chain 1lc5A in training set Warning: unaligning (T0506)R86 (1lc5A)H207 because G (3-10) conformation "forbidden" or filtered. T0506 82 :ETDA 1lc5A 203 :KDNP T0506 87 :ISVT 1lc5A 208 :IWVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31519 # 1p30A.82.278 read from T0506.t04.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)T83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1p30A)L279 T0506 84 :DARISVT 1p30A 280 :TPKVVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31520 # 1f74A.82.154 read from T0506.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)D84 (1f74A)N157 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1f74A)K159 because G (3-10) conformation "forbidden" or filtered. T0506 82 :ET 1f74A 155 :YK T0506 85 :A 1f74A 158 :P T0506 87 :ISVT 1f74A 160 :VLGV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31523 # 1sr9A.82.158 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)T83 (1sr9A)G160 because T (delta_L) conformation "forbidden" or filtered. T0506 82 :E 1sr9A 159 :S T0506 84 :DARISVT 1sr9A 161 :APRAIVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=31525 # 1fo8A.82.127 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 82 :ETDARISVT 1fo8A 232 :KADPSLWCV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31526 # 1flmA.82.58 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 82 :ETDARISVT 1flmA 59 :ARDERVLMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31527 # 1vb3A.82.121 read from T0506.t04.many.frag # found chain 1vb3A in template set T0506 82 :ETDARISVT 1vb3A 122 :AGDKPVTIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31528 # 1h1nA.82.120 read from T0506.t04.many.frag # found chain 1h1nA in training set T0506 82 :ETDARISVT 1h1nA 121 :ASNPLVIFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31529 # 1q52A.82.143 read from T0506.t04.many.frag # found chain 1q52A in training set Warning: unaligning (T0506)D84 (1q52A)M146 because P (beta_P) conformation "forbidden" or filtered. T0506 82 :ET 1q52A 144 :RF T0506 85 :ARISVT 1q52A 147 :PKVVIC Number of specific fragments extracted= 2 number of extra gaps= 1 total=31531 # 1tr9A.82.21 read from T0506.t04.many.frag # found chain 1tr9A in training set T0506 82 :ETDARISVT 1tr9A 21 :LQHPTVGGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31532 # 1g5tA.82.53 read from T0506.t04.many.frag # found chain 1g5tA in training set T0506 82 :ETDARISVT 1g5tA 54 :GHGKNVGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31533 # 1j9lA.82.23 read from T0506.t04.many.frag # found chain 1j9lA in template set T0506 82 :ETDARISVT 1j9lA 24 :SEEHEVFVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31534 # 1ovnA.82.30 read from T0506.t04.many.frag # found chain 1ovnA in template set T0506 82 :ETDARISVT 1ovnA 40 :ERFPYSVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31535 # 1rjdA.82.93 read from T0506.t04.many.frag # found chain 1rjdA in training set Warning: unaligning (T0506)D84 (1rjdA)N96 because D (zeta) conformation "forbidden" or filtered. T0506 82 :ET 1rjdA 94 :VA T0506 85 :ARISVT 1rjdA 97 :EKVQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31537 # 1xeaA.82.22 read from T0506.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0506)R86 (1xeaA)D27 because L (left) conformation "forbidden" or filtered. T0506 82 :ETDA 1xeaA 23 :AQWP T0506 87 :ISVT 1xeaA 28 :IELV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31539 # 1e7uA.82.156 read from T0506.t04.many.frag # found chain 1e7uA in template set Warning: unaligning (T0506)D84 (1e7uA)G300 because T (delta_L) conformation "forbidden" or filtered. T0506 82 :ET 1e7uA 298 :KN T0506 85 :ARISVT 1e7uA 301 :EEIHLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31541 # 1w8sA.82.12 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)A85 (1w8sA)G16 because T (delta_L) conformation "forbidden" or filtered. T0506 82 :ETD 1w8sA 13 :ARR T0506 86 :RISVT 1w8sA 17 :KSIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31543 # 1fiqB.82.30 read from T0506.t04.many.frag # found chain 1fiqB in template set T0506 82 :ETDARISVT 1fiqB 250 :AQHPEAKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31544 # 1yt3A.82.69 read from T0506.t04.many.frag # found chain 1yt3A in template set Warning: unaligning (T0506)R86 (1yt3A)S74 because G (3-10) conformation "forbidden" or filtered. T0506 82 :ETDA 1yt3A 70 :LRDP T0506 87 :ISVT 1yt3A 75 :ITKF Number of specific fragments extracted= 2 number of extra gaps= 1 total=31546 # 1qopB.82.64 read from T0506.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)D84 (1qopB)G68 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1qopB)R70 because G (3-10) conformation "forbidden" or filtered. T0506 82 :ET 1qopB 66 :TA T0506 85 :A 1qopB 69 :T T0506 87 :ISVT 1qopB 71 :TTLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=31549 # 1ua4A.82.81 read from T0506.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0506)D84 (1ua4A)G84 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1ua4A)A86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I87 (1ua4A)A87 because Y (epsilon') conformation "forbidden" or filtered. T0506 82 :ET 1ua4A 82 :RR T0506 85 :A 1ua4A 85 :K T0506 88 :SVT 1ua4A 88 :ELF Number of specific fragments extracted= 3 number of extra gaps= 2 total=31552 # 1i6lA.82.29 read from T0506.t04.many.frag # found chain 1i6lA in training set T0506 82 :ETDARISVT 1i6lA 30 :QHEYNCYFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=31553 # 1oi0A.82.87 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)D84 (1oi0A)F90 because Y (epsilon') conformation "forbidden" or filtered. T0506 82 :ET 1oi0A 88 :TR T0506 85 :ARISVT 1oi0A 91 :GKYHII Number of specific fragments extracted= 2 number of extra gaps= 1 total=31555 # 1s4nA.82.170 read from T0506.t04.many.frag # found chain 1s4nA in template set Warning: unaligning (T0506)A85 (1s4nA)E268 because L (left) conformation "forbidden" or filtered. T0506 82 :ETD 1s4nA 265 :QEN T0506 86 :RISVT 1s4nA 269 :KVYGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=31557 # 1v84A.82.127 read from T0506.t04.many.frag # found chain 1v84A in template set T0506 82 :ETDARISVT 1v84A 209 :RSTRRVSVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=31558 # 7a3hA.82.126 read from T0506.t04.many.frag # found chain 7a3hA in training set Warning: unaligning (T0506)D84 (7a3hA)Y129 because E (beta_S) conformation "forbidden" or filtered. T0506 82 :ET 7a3hA 127 :GD T0506 85 :ARISVT 7a3hA 130 :PNVIYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31560 # 1p30A.83.279 read from T0506.t04.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)T83 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1p30A)L279 Warning: unaligning (T0506)A85 (1p30A)P281 because P (beta_P) conformation "forbidden" or filtered. T0506 84 :D 1p30A 280 :T T0506 86 :RISVTL 1p30A 282 :KVVLYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31562 # 1f74A.83.155 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 83 :TDARISVTL 1f74A 156 :KNPKVLGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31563 # 1w8sA.83.13 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)A85 (1w8sA)G16 because T (delta_L) conformation "forbidden" or filtered. T0506 83 :TD 1w8sA 14 :RR T0506 86 :RISVTL 1w8sA 17 :KSIILA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31565 # 1ty9A.83.100 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 83 :TDARISVTL 1ty9A 101 :HNPWASGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31566 # 1yrtA.83.31 read from T0506.t04.many.frag # found chain 1yrtA in template set T0506 83 :TDARISVTL 1yrtA 32 :KEKNATLMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31567 # 1vb3A.83.122 read from T0506.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)T83 (1vb3A)G123 because S (epsilon) conformation "forbidden" or filtered. T0506 84 :DARISVTL 1vb3A 124 :DKPVTILT Number of specific fragments extracted= 1 number of extra gaps= 1 total=31568 # 1g5tA.83.54 read from T0506.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)D84 (1g5tA)G56 because T (delta_L) conformation "forbidden" or filtered. T0506 83 :T 1g5tA 55 :H T0506 85 :ARISVTL 1g5tA 57 :KNVGVVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31570 # 1uarA.83.19 read from T0506.t04.many.frag # found chain 1uarA in training set T0506 83 :TDARISVTL 1uarA 20 :EDPKVRVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31571 # 1oi0A.83.88 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)D84 (1oi0A)F90 because Y (epsilon') conformation "forbidden" or filtered. T0506 83 :T 1oi0A 89 :R T0506 85 :ARISVTL 1oi0A 91 :GKYHIIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31573 # 1xhnA.83.82 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)I87 (1xhnA)A87 because Y (epsilon') conformation "forbidden" or filtered. T0506 83 :TDAR 1xhnA 83 :ENPY T0506 88 :SVTL 1xhnA 88 :TLTM Number of specific fragments extracted= 2 number of extra gaps= 1 total=31575 # 1sr9A.83.159 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)D84 (1sr9A)A161 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :T 1sr9A 160 :G T0506 85 :ARISVTL 1sr9A 162 :PRAIVHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=31577 # 2btoA.83.197 read from T0506.t04.many.frag # found chain 2btoA in template set T0506 83 :TDARISVTL 2btoA 198 :RSADACLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31578 # 1lc5A.83.203 read from T0506.t04.many.frag # found chain 1lc5A in training set T0506 83 :TDARISVTL 1lc5A 204 :DNPHIWVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31579 # 1qopB.83.65 read from T0506.t04.many.frag # found chain 1qopB in training set Warning: unaligning (T0506)D84 (1qopB)G68 because T (delta_L) conformation "forbidden" or filtered. T0506 83 :T 1qopB 67 :A T0506 85 :ARISVTL 1qopB 69 :TRTTLYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31581 # 1dljA.83.106 read from T0506.t04.many.frag # found chain 1dljA in training set Warning: unaligning (T0506)D84 (1dljA)N108 because E (beta_S) conformation "forbidden" or filtered. T0506 83 :T 1dljA 107 :V T0506 85 :ARISVTL 1dljA 109 :SHATLII Number of specific fragments extracted= 2 number of extra gaps= 1 total=31583 # 1ua4A.83.82 read from T0506.t04.many.frag # found chain 1ua4A in template set Warning: unaligning (T0506)R86 (1ua4A)A86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I87 (1ua4A)A87 because Y (epsilon') conformation "forbidden" or filtered. T0506 83 :TDA 1ua4A 83 :RGK T0506 88 :SVTL 1ua4A 88 :ELFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31585 # 1i6lA.83.30 read from T0506.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0506)A85 (1i6lA)Y33 because E (beta_S) conformation "forbidden" or filtered. T0506 83 :TD 1i6lA 31 :HE T0506 86 :RISVTL 1i6lA 34 :NCYFCI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31587 # 1h1nA.83.121 read from T0506.t04.many.frag # found chain 1h1nA in training set T0506 83 :TDARISVTL 1h1nA 122 :SNPLVIFDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31588 2c7pA expands to /projects/compbio/data/pdb/2c7p.pdb.gz 2c7pA:Skipped atom 991, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 993, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 995, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 997, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1001, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1007, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1502, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1504, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1506, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1508, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1510, because occupancy 0.500 <= existing 0.500 in 2c7pA Skipped atom 1512, because occupancy 0.500 <= existing 0.500 in 2c7pA # 2c7pA.83.110 read from T0506.t04.many.frag # adding 2c7pA to template set # found chain 2c7pA in template set Warning: unaligning (T0506)D84 (2c7pA)K112 because L (left) conformation "forbidden" or filtered. T0506 83 :T 2c7pA 111 :K T0506 85 :ARISVTL 2c7pA 113 :PKVVFME Number of specific fragments extracted= 2 number of extra gaps= 1 total=31590 # 1ovnA.83.31 read from T0506.t04.many.frag # found chain 1ovnA in template set T0506 83 :TDARISVTL 1ovnA 41 :RFPYSVVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31591 # 1q52A.83.144 read from T0506.t04.many.frag # found chain 1q52A in training set T0506 83 :TDARISVTL 1q52A 145 :FMPKVVICL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31592 # 1w5tA.83.134 read from T0506.t04.many.frag # found chain 1w5tA in template set Warning: unaligning (T0506)A85 (1w5tA)N137 because L (left) conformation "forbidden" or filtered. T0506 83 :TD 1w5tA 135 :VE T0506 86 :RISVTL 1w5tA 138 :HYLLVI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31594 # 1o65A.83.149 read from T0506.t04.many.frag # found chain 1o65A in template set Warning: unaligning (T0506)A85 (1o65A)G150 because T (delta_L) conformation "forbidden" or filtered. T0506 83 :TD 1o65A 148 :NT T0506 86 :RISVTL 1o65A 151 :KVGWLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31596 # 1fiqB.83.31 read from T0506.t04.many.frag # found chain 1fiqB in template set Warning: unaligning (T0506)D84 (1fiqB)H252 because D (zeta) conformation "forbidden" or filtered. T0506 83 :T 1fiqB 251 :Q T0506 85 :ARISVTL 1fiqB 253 :PEAKLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31598 # 1i60A.83.164 read from T0506.t04.many.frag # found chain 1i60A in training set Warning: unaligning (T0506)T83 (1i60A)N165 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (1i60A)G170 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARI 1i60A 166 :RDNV T0506 89 :VTL 1i60A 171 :LVL Number of specific fragments extracted= 2 number of extra gaps= 2 total=31600 # 1vl7A.83.74 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 83 :TDARISVTL 1vl7A 63 :ANPLVNVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31601 # 1j9lA.83.24 read from T0506.t04.many.frag # found chain 1j9lA in template set T0506 83 :TDARISVTL 1j9lA 25 :EEHEVFVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31602 # 1flmA.83.59 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R86 (1flmA)R63 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :TDA 1flmA 60 :RDE T0506 87 :ISVTL 1flmA 64 :VLMTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31604 # 1zedA.83.300 read from T0506.t04.many.frag # found chain 1zedA in template set T0506 83 :TDARISVTL 1zedA 301 :RNPRGFFLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31605 1m5wA expands to /projects/compbio/data/pdb/1m5w.pdb.gz 1m5wA:# 1m5wA.83.85 read from T0506.t04.many.frag # adding 1m5wA to template set # found chain 1m5wA in template set Warning: unaligning (T0506)A85 (1m5wA)P88 because P (beta_P) conformation "forbidden" or filtered. T0506 83 :TD 1m5wA 86 :TK T0506 86 :RISVTL 1m5wA 89 :HFCCLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31607 # 1yrtA.84.32 read from T0506.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)R86 (1yrtA)N35 because L (left) conformation "forbidden" or filtered. T0506 84 :DA 1yrtA 33 :EK T0506 87 :ISVTLA 1yrtA 36 :ATLMFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31609 # 1f74A.84.156 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 84 :DARISVTLA 1f74A 157 :NPKVLGVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31610 # 1p30A.84.280 read from T0506.t04.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)A92 (1p30A)E288 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARISVTL 1p30A 280 :TPKVVLYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=31611 # 1ty9A.84.101 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 84 :DARISVTLA 1ty9A 102 :NPWASGVLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31612 # 1uarA.84.20 read from T0506.t04.many.frag # found chain 1uarA in training set T0506 84 :DARISVTLA 1uarA 21 :DPKVRVLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31613 # 1g5tA.84.55 read from T0506.t04.many.frag # found chain 1g5tA in training set T0506 84 :DARISVTLA 1g5tA 56 :GKNVGVVQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=31614 # 1w8sA.84.14 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 84 :DARISVTLA 1w8sA 15 :RGKSIILAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31615 # 1xhnA.84.83 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 84 :DARISVTLA 1xhnA 84 :NPYATLTMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31616 # 1o97D.84.86 read from T0506.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0506)D84 (1o97D)N87 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A85 (1o97D)P88 because P (beta_P) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1o97D 89 :SVVLLPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=31617 # 1ovnA.84.32 read from T0506.t04.many.frag # found chain 1ovnA in template set Warning: unaligning (T0506)A92 (1ovnA)D50 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARISVTL 1ovnA 42 :FPYSVVKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=31618 1k3rA expands to /projects/compbio/data/pdb/1k3r.pdb.gz 1k3rA:# 1k3rA.84.209 read from T0506.t04.many.frag # adding 1k3rA to template set # found chain 1k3rA in template set Warning: unaligning (T0506)D84 (1k3rA)A210 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1k3rA)G218 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1k3rA 211 :REAAILF Number of specific fragments extracted= 1 number of extra gaps= 2 total=31619 # 1vb3A.84.123 read from T0506.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)R86 (1vb3A)P126 because P (beta_P) conformation "forbidden" or filtered. T0506 84 :DA 1vb3A 124 :DK T0506 87 :ISVTLA 1vb3A 127 :VTILTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31621 # 1xg4A.84.105 read from T0506.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)A85 (1xg4A)G108 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (1xg4A)G111 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :D 1xg4A 107 :A T0506 86 :RI 1xg4A 109 :AA T0506 89 :VTLA 1xg4A 112 :LHIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=31624 # 2c7pA.84.111 read from T0506.t04.many.frag # found chain 2c7pA in template set Warning: unaligning (T0506)D84 (2c7pA)K112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (2c7pA)N120 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARISVTL 2c7pA 113 :PKVVFME Number of specific fragments extracted= 1 number of extra gaps= 2 total=31625 # 1zkdA.84.233 read from T0506.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0506)A92 (1zkdA)D242 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DARISVTL 1zkdA 234 :QGGAALII Number of specific fragments extracted= 1 number of extra gaps= 1 total=31626 # 1oi0A.84.89 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)A85 (1oi0A)G91 because S (epsilon) conformation "forbidden" or filtered. T0506 84 :D 1oi0A 90 :F T0506 86 :RISVTLA 1oi0A 92 :KYHIIVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=31628 # 2btoA.84.198 read from T0506.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)I87 (2btoA)A202 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DAR 2btoA 199 :SAD T0506 88 :SVTLA 2btoA 203 :CLIFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31630 # 1jfrA.84.79 read from T0506.t04.many.frag # found chain 1jfrA in template set Warning: unaligning (T0506)A85 (1jfrA)G81 because L (left) conformation "forbidden" or filtered. T0506 84 :D 1jfrA 80 :Q T0506 86 :RISVTLA 1jfrA 82 :FVVFTID Number of specific fragments extracted= 2 number of extra gaps= 1 total=31632 # 2bw4A.84.148 read from T0506.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0506)R86 (2bw4A)N151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (2bw4A)A153 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (2bw4A)L157 because P (beta_P) conformation "forbidden" or filtered. T0506 84 :DA 2bw4A 149 :GM T0506 87 :I 2bw4A 152 :G T0506 89 :VTL 2bw4A 154 :IMV Number of specific fragments extracted= 3 number of extra gaps= 3 total=31635 # 1z90A.84.239 read from T0506.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)D84 (1z90A)K240 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1z90A)T248 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1z90A 241 :NEYCMEV Number of specific fragments extracted= 1 number of extra gaps= 2 total=31636 # 1i6lA.84.31 read from T0506.t04.many.frag # found chain 1i6lA in training set Warning: unaligning (T0506)A85 (1i6lA)Y33 because E (beta_S) conformation "forbidden" or filtered. T0506 84 :D 1i6lA 32 :E T0506 86 :RISVTLA 1i6lA 34 :NCYFCIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31638 # 1j9lA.84.25 read from T0506.t04.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)T90 (1j9lA)V32 because D (zeta) conformation "forbidden" or filtered. T0506 84 :DARISV 1j9lA 26 :EHEVFV T0506 91 :LA 1j9lA 33 :AP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31640 # 1vl7A.84.75 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 84 :DARISVTLA 1vl7A 64 :NPLVNVLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=31641 # 1w5tA.84.135 read from T0506.t04.many.frag # found chain 1w5tA in template set Warning: unaligning (T0506)A85 (1w5tA)N137 because L (left) conformation "forbidden" or filtered. T0506 84 :D 1w5tA 136 :E T0506 86 :RISVTLA 1w5tA 138 :HYLLVIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31643 # 1sr9A.84.160 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)R86 (1sr9A)R163 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1sr9A)Y169 because Y (epsilon') conformation "forbidden" or filtered. T0506 84 :DA 1sr9A 161 :AP T0506 87 :ISVTL 1sr9A 164 :AIVHF Number of specific fragments extracted= 2 number of extra gaps= 2 total=31645 # 1e7uA.84.158 read from T0506.t04.many.frag # found chain 1e7uA in template set T0506 84 :DARISVTLA 1e7uA 300 :GEEIHLVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31646 # 1lc5A.84.204 read from T0506.t04.many.frag # found chain 1lc5A in training set T0506 84 :DARISVTLA 1lc5A 205 :NPHIWVLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31647 # 1e9rA.84.335 read from T0506.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0506)A92 (1e9rA)G414 because S (epsilon) conformation "forbidden" or filtered. T0506 84 :DARISVTL 1e9rA 406 :SFRSLVVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31648 # 1w6gA.84.54 read from T0506.t04.many.frag # found chain 1w6gA in template set T0506 84 :DARISVTLA 1w6gA 57 :DRRFRVFIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31649 # 1h1nA.84.122 read from T0506.t04.many.frag # found chain 1h1nA in training set Warning: unaligning (T0506)D84 (1h1nA)N123 because N (gamma') conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1h1nA 124 :PLVIFDTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31650 # 1yrtA.85.33 read from T0506.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)R86 (1yrtA)N35 because L (left) conformation "forbidden" or filtered. T0506 85 :A 1yrtA 34 :K T0506 87 :ISVTLAP 1yrtA 36 :ATLMFRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31652 # 1ty9A.85.102 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P93 (1ty9A)W111 because D (zeta) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1ty9A 103 :PWASGVLY Number of specific fragments extracted= 1 number of extra gaps= 1 total=31653 # 1uarA.85.21 read from T0506.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)A92 (1uarA)V29 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1uarA)D30 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1uarA 22 :PKVRVLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31654 # 1k3rA.85.210 read from T0506.t04.many.frag # found chain 1k3rA in template set Warning: unaligning (T0506)A92 (1k3rA)G218 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1k3rA 211 :REAAILF T0506 93 :P 1k3rA 219 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=31656 # 1p30A.85.281 read from T0506.t04.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)A92 (1p30A)E288 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1p30A)D289 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1p30A 281 :PKVVLYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=31657 # 1ovnA.85.33 read from T0506.t04.many.frag # found chain 1ovnA in template set Warning: unaligning (T0506)A92 (1ovnA)D50 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARISVTL 1ovnA 43 :PYSVVKF T0506 93 :P 1ovnA 51 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31659 # 1jfrA.85.80 read from T0506.t04.many.frag # found chain 1jfrA in template set T0506 85 :ARISVTLAP 1jfrA 81 :GFVVFTIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=31660 # 1zkdA.85.234 read from T0506.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0506)R86 (1zkdA)G236 because S (epsilon) conformation "forbidden" or filtered. T0506 85 :A 1zkdA 235 :G T0506 87 :ISVTLAP 1zkdA 237 :AALIIDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=31662 # 1oi0A.85.90 read from T0506.t04.many.frag # found chain 1oi0A in training set T0506 85 :ARISVTLAP 1oi0A 91 :GKYHIIVCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31663 # 2c7pA.85.112 read from T0506.t04.many.frag # found chain 2c7pA in template set Warning: unaligning (T0506)A92 (2c7pA)N120 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARISVTL 2c7pA 113 :PKVVFME T0506 93 :P 2c7pA 121 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=31665 # 1z90A.85.240 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 85 :ARISVTLAP 1z90A 241 :NEYCMEVTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31666 # 2bw4A.85.149 read from T0506.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0506)R86 (2bw4A)N151 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S88 (2bw4A)A153 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :A 2bw4A 150 :M T0506 87 :I 2bw4A 152 :G T0506 89 :VTLAP 2bw4A 154 :IMVLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=31669 # 1e9rA.85.336 read from T0506.t04.many.frag # found chain 1e9rA in template set Warning: unaligning (T0506)A92 (1e9rA)G414 because S (epsilon) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1e9rA 407 :FRSLVVL T0506 93 :P 1e9rA 415 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=31671 # 1o97D.85.87 read from T0506.t04.many.frag # found chain 1o97D in training set Warning: unaligning (T0506)P93 (1o97D)S96 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1o97D 88 :PSVVLLPH Number of specific fragments extracted= 1 number of extra gaps= 1 total=31672 # 1vl7A.85.76 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 85 :ARISVTLAP 1vl7A 65 :PLVNVLFVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31673 # 1xhnA.85.84 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A92 (1xhnA)T92 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1xhnA 85 :PYATLTM T0506 93 :P 1xhnA 93 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=31675 # 1sr9A.85.161 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)A92 (1sr9A)Y169 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1sr9A)N170 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTL 1sr9A 162 :PRAIVHF Number of specific fragments extracted= 1 number of extra gaps= 1 total=31676 # 1r2qA.85.78 read from T0506.t04.many.frag # found chain 1r2qA in training set Warning: unaligning (T0506)P93 (1r2qA)D101 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1r2qA 93 :AQAAIVVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=31677 # 1f74A.85.157 read from T0506.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)P93 (1f74A)T166 because G (3-10) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1f74A 158 :PKVLGVKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=31678 # 1jl0A.85.250 read from T0506.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0506)L91 (1jl0A)T257 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARISVT 1jl0A 251 :SYVSFE T0506 92 :AP 1jl0A 258 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31680 # 1vb3A.85.124 read from T0506.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)A85 (1vb3A)K125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1vb3A)T133 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1vb3A 126 :PVTILTA Number of specific fragments extracted= 1 number of extra gaps= 2 total=31681 # 1g5tA.85.56 read from T0506.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)P93 (1g5tA)I65 because E (beta_S) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1g5tA 57 :KNVGVVQF Number of specific fragments extracted= 1 number of extra gaps= 1 total=31682 # 1k8kC.85.117 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)A85 (1k8kC)R118 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1k8kC)V119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1k8kC)E126 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1k8kC 120 :ISICYF Number of specific fragments extracted= 1 number of extra gaps= 2 total=31683 # 1j9lA.85.26 read from T0506.t04.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)P93 (1j9lA)D35 because G (3-10) conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1j9lA 27 :HEVFVVAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=31684 1m6eX expands to /projects/compbio/data/pdb/1m6e.pdb.gz 1m6eX:# 1m6eX.85.202 read from T0506.t04.many.frag # adding 1m6eX to template set # found chain 1m6eX in template set Warning: unaligning (T0506)P93 (1m6eX)G211 because Y (epsilon') conformation "forbidden" or filtered. T0506 85 :ARISVTLA 1m6eX 203 :GRMVLTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31685 # 2btoA.85.199 read from T0506.t04.many.frag # found chain 2btoA in template set T0506 85 :ARISVTLAP 2btoA 200 :ADACLIFDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31686 # 1f8eA.85.107 read from T0506.t04.many.frag # found chain 1f8eA in training set Warning: unaligning (T0506)A85 (1f8eA)T188 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1f8eA)S195 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1f8eA)G196 because S (epsilon) conformation "forbidden" or filtered. T0506 86 :RISVTL 1f8eA 189 :RMSICI Number of specific fragments extracted= 1 number of extra gaps= 2 total=31687 2bbhA expands to /projects/compbio/data/pdb/2bbh.pdb.gz 2bbhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 2bbhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1396, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1398, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1400, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1402, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1404, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1406, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1408, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1410, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1774, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1786, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1788, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1790, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1792, because occupancy 0.500 <= existing 0.500 in 2bbhA Skipped atom 1794, because occupancy 0.500 <= existing 0.500 in 2bbhA # 2bbhA.85.135 read from T0506.t04.many.frag # adding 2bbhA to template set # found chain 2bbhA in template set Warning: unaligning (T0506)A85 (2bbhA)K133 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (2bbhA)N134 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLAP 2bbhA 135 :CVLMFQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31688 # 1ojrA.85.135 read from T0506.t04.many.frag # found chain 1ojrA in training set T0506 85 :ARISVTLAP 1ojrA 136 :DRVIMHCHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31689 # 1xg4A.85.106 read from T0506.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)A85 (1xg4A)G108 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R86 (1xg4A)A109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1xg4A)D116 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1xg4A 110 :AGLHIE Number of specific fragments extracted= 1 number of extra gaps= 2 total=31690 # 1ty9A.86.103 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P93 (1ty9A)W111 because D (zeta) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1ty9A 104 :WASGVLY T0506 94 :F 1ty9A 112 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31692 # 1oi0A.86.91 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)F94 (1oi0A)P100 because C (cis) conformation "forbidden" or filtered. T0506 86 :RISVTLAP 1oi0A 92 :KYHIIVCY Number of specific fragments extracted= 1 number of extra gaps= 1 total=31693 # 1jfrA.86.81 read from T0506.t04.many.frag # found chain 1jfrA in template set T0506 86 :RISVTLAPF 1jfrA 82 :FVVFTIDTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31694 # 1vl7A.86.77 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 86 :RISVTLAPF 1vl7A 66 :LVNVLFVDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31695 # 1uarA.86.22 read from T0506.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)A92 (1uarA)V29 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1uarA)D30 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTL 1uarA 23 :KVRVLE T0506 94 :F 1uarA 31 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=31697 # 1k3rA.86.211 read from T0506.t04.many.frag # found chain 1k3rA in template set T0506 86 :RISVTLAPF 1k3rA 212 :EAAILFGGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31698 # 2bbhA.86.136 read from T0506.t04.many.frag # found chain 2bbhA in template set T0506 86 :RISVTLAPF 2bbhA 134 :NCVLMFQEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31699 # 1zkdA.86.235 read from T0506.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0506)A92 (1zkdA)D242 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RISVTL 1zkdA 236 :GAALII T0506 93 :PF 1zkdA 243 :YG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31701 # 1k8kC.86.118 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)R86 (1k8kC)V119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1k8kC)E126 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1k8kC)Q127 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1k8kC 120 :ISICYF Number of specific fragments extracted= 1 number of extra gaps= 2 total=31702 # 1jl0A.86.251 read from T0506.t04.many.frag # found chain 1jl0A in training set Warning: unaligning (T0506)L91 (1jl0A)T257 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RISVT 1jl0A 252 :YVSFE T0506 92 :APF 1jl0A 258 :NLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31704 # 2bw4A.86.150 read from T0506.t04.many.frag # found chain 2bw4A in template set Warning: unaligning (T0506)I87 (2bw4A)G152 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :R 2bw4A 151 :N T0506 88 :SVTLAPF 2bw4A 153 :AIMVLPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31706 # 1ovnA.86.34 read from T0506.t04.many.frag # found chain 1ovnA in template set Warning: unaligning (T0506)A92 (1ovnA)D50 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RISVTL 1ovnA 44 :YSVVKF T0506 93 :PF 1ovnA 51 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31708 # 1r2qA.86.79 read from T0506.t04.many.frag # found chain 1r2qA in training set Warning: unaligning (T0506)P93 (1r2qA)D101 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1r2qA 94 :QAAIVVY T0506 94 :F 1r2qA 102 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=31710 # 1yrtA.86.34 read from T0506.t04.many.frag # found chain 1yrtA in template set Warning: unaligning (T0506)R86 (1yrtA)N35 because L (left) conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1yrtA 36 :ATLMFRLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=31711 # 2c7pA.86.113 read from T0506.t04.many.frag # found chain 2c7pA in template set T0506 86 :RISVTLAPF 2c7pA 114 :KVVFMENVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31712 # 1w6gA.86.56 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)P93 (1w6gA)D66 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1w6gA 59 :RFRVFIH T0506 94 :F 1w6gA 67 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=31714 # 1g5tA.86.57 read from T0506.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)P93 (1g5tA)I65 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1g5tA 58 :NVGVVQF T0506 94 :F 1g5tA 66 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=31716 # 1z90A.86.241 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 86 :RISVTLAPF 1z90A 242 :EYCMEVTPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=31717 # 1xszA.86.273 read from T0506.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)P93 (1xszA)T279 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTLA 1xszA 272 :QATIQVY T0506 94 :F 1xszA 280 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=31719 # 1c93A.86.79 read from T0506.t04.many.frag # found chain 1c93A in template set T0506 86 :RISVTLAPF 1c93A 85 :KVLLSVLGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31720 # 1m6eX.86.203 read from T0506.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0506)P93 (1m6eX)G211 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RISVTLA 1m6eX 204 :RMVLTIL T0506 94 :F 1m6eX 212 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31722 # 1xg4A.86.107 read from T0506.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)S88 (1xg4A)G111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1xg4A)D116 because G (3-10) conformation "forbidden" or filtered. T0506 86 :RI 1xg4A 109 :AA T0506 89 :VTLA 1xg4A 112 :LHIE T0506 94 :F 1xg4A 117 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=31725 # 1xhnA.86.85 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 86 :RISVTLAPF 1xhnA 86 :YATLTMTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31726 # 1vpjA.86.132 read from T0506.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0506)R86 (1vpjA)A121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1vpjA)G128 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1vpjA 122 :AYFAFT T0506 94 :F 1vpjA 129 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31728 2apjA expands to /projects/compbio/data/pdb/2apj.pdb.gz 2apjA:Bad short name: CI2 for alphabet: pdb_atoms Bad short name: CJ for alphabet: pdb_atoms Bad short name: CI1 for alphabet: pdb_atoms Bad short name: CH1 for alphabet: pdb_atoms Skipped atom 275, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 277, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 279, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 547, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 549, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 551, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 734, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 736, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 738, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 1623, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 1625, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 1627, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 1825, because occupancy 0.350 <= existing 0.650 in 2apjA Skipped atom 1827, because occupancy 0.350 <= existing 0.650 in 2apjA # 2apjA.86.111 read from T0506.t04.many.frag # adding 2apjA to template set # found chain 2apjA in template set Warning: unaligning (T0506)A92 (2apjA)C118 because G (3-10) conformation "forbidden" or filtered. T0506 86 :RISVTL 2apjA 112 :VIGLVP T0506 93 :PF 2apjA 119 :AS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31730 # 1vliA.86.186 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)A92 (1vliA)C181 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1vliA)V182 because E (beta_S) conformation "forbidden" or filtered. T0506 86 :RISVTL 1vliA 175 :QIAIMH T0506 94 :F 1vliA 183 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=31732 # 1e9rA.86.337 read from T0506.t04.many.frag # found chain 1e9rA in template set T0506 86 :RISVTLAPF 1e9rA 408 :RSLVVLGGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31733 1fjgP expands to /projects/compbio/data/pdb/1fjg.pdb.gz 1fjgP:# 1fjgP.86.15 read from T0506.t04.many.frag # adding 1fjgP to template set # found chain 1fjgP in template set Warning: unaligning (T0506)A92 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0506 86 :RISVTL 1fjgP 16 :HYRIVV T0506 93 :PF 1fjgP 23 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31735 # 1i88A.86.218 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1i88A)D227 because L (left) conformation "forbidden" or filtered. T0506 86 :RISVTL 1i88A 219 :AAALIV T0506 93 :P 1i88A 226 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=31737 # 1wvqA.86.46 read from T0506.t04.many.frag # found chain 1wvqA in template set T0506 86 :RISVTLAPF 1wvqA 47 :KFGIAFCEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31738 # 1w6gA.87.57 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)P93 (1w6gA)D66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1w6gA)S68 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1w6gA 60 :FRVFIH T0506 94 :F 1w6gA 67 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=31740 # 2bbhA.87.137 read from T0506.t04.many.frag # found chain 2bbhA in template set T0506 87 :ISVTLAPFG 2bbhA 135 :CVLMFQEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31741 # 1jfrA.87.82 read from T0506.t04.many.frag # found chain 1jfrA in template set Warning: unaligning (T0506)G95 (1jfrA)T91 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1jfrA 83 :VVFTIDTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=31742 # 1oi0A.87.92 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)F94 (1oi0A)P100 because C (cis) conformation "forbidden" or filtered. T0506 87 :ISVTLAP 1oi0A 93 :YHIIVCY T0506 95 :G 1oi0A 101 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=31744 # 1vl7A.87.78 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 87 :ISVTLAPFG 1vl7A 67 :VNVLFVDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31745 # 1k8kC.87.119 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P93 (1k8kC)E126 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1k8kC 120 :ISICYF T0506 94 :FG 1k8kC 127 :QE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31747 # 1uarA.87.23 read from T0506.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)P93 (1uarA)D30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1uarA)D32 because N (gamma') conformation "forbidden" or filtered. T0506 87 :ISVTLA 1uarA 24 :VRVLEV T0506 94 :F 1uarA 31 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=31749 # 1b25A.87.106 read from T0506.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0506)P93 (1b25A)G113 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1b25A)A115 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1b25A 107 :DALVVE T0506 94 :F 1b25A 114 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=31751 # 1wvqA.87.47 read from T0506.t04.many.frag # found chain 1wvqA in template set Warning: unaligning (T0506)G95 (1wvqA)S56 because Y (epsilon') conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1wvqA 48 :FGIAFCEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=31752 # 1fjgP.87.16 read from T0506.t04.many.frag # found chain 1fjgP in template set T0506 87 :ISVTLAPFG 1fjgP 17 :YRIVVTDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=31753 # 1g5tA.87.58 read from T0506.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)P93 (1g5tA)I65 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1g5tA)G67 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1g5tA 59 :VGVVQF T0506 94 :F 1g5tA 66 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=31755 # 2fb5A.87.92 read from T0506.t04.many.frag # found chain 2fb5A in template set T0506 87 :ISVTLAPFG 2fb5A 93 :GALIVVERN Number of specific fragments extracted= 1 number of extra gaps= 0 total=31756 # 1ty9A.87.104 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P93 (1ty9A)W111 because D (zeta) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1ty9A 105 :ASGVLY T0506 94 :FG 1ty9A 112 :RE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31758 # 1r0vA.87.116 read from T0506.t04.many.frag # found chain 1r0vA in template set Warning: unaligning (T0506)S88 because of BadResidue code BAD_PEPTIDE in next template residue (1r0vA)L119 Warning: unaligning (T0506)V89 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)L119 Warning: unaligning (T0506)A92 (1r0vA)V122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1r0vA)E125 because G (3-10) conformation "forbidden" or filtered. T0506 87 :I 1r0vA 117 :L T0506 90 :TL 1r0vA 120 :AV T0506 93 :PF 1r0vA 123 :DE Number of specific fragments extracted= 3 number of extra gaps= 3 total=31761 # 1xg4A.87.108 read from T0506.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)V89 (1xg4A)L112 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1xg4A)D116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1xg4A)V118 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :IS 1xg4A 110 :AG T0506 90 :TLA 1xg4A 113 :HIE T0506 94 :F 1xg4A 117 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=31764 # 1k3rA.87.212 read from T0506.t04.many.frag # found chain 1k3rA in template set T0506 87 :ISVTLAPFG 1k3rA 213 :AAILFGGPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=31765 # 1xszA.87.274 read from T0506.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)P93 (1xszA)T279 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1xszA)N281 because Y (epsilon') conformation "forbidden" or filtered. T0506 87 :ISVTLA 1xszA 273 :ATIQVY T0506 94 :F 1xszA 280 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=31767 # 2bghA.87.40 read from T0506.t04.many.frag # found chain 2bghA in template set T0506 87 :ISVTLAPFG 2bghA 41 :PFILFYPNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31768 # 1yacA.87.12 read from T0506.t04.many.frag # found chain 1yacA in training set Warning: unaligning (T0506)P93 (1yacA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1yacA)Q21 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1yacA 13 :AAVLLV T0506 94 :F 1yacA 20 :H Number of specific fragments extracted= 2 number of extra gaps= 2 total=31770 # 1i88A.87.219 read from T0506.t04.many.frag # found chain 1i88A in training set T0506 87 :ISVTLAPFG 1i88A 220 :AALIVGSDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=31771 # 1c93A.87.80 read from T0506.t04.many.frag # found chain 1c93A in template set T0506 87 :ISVTLAPFG 1c93A 86 :VLLSVLGNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=31772 # 1zavA.87.82 read from T0506.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0506)P93 (1zavA)T88 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1zavA 82 :TAVLYV T0506 94 :FG 1zavA 89 :EG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31774 # 1r2qA.87.80 read from T0506.t04.many.frag # found chain 1r2qA in training set Warning: unaligning (T0506)A92 (1r2qA)Y100 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1r2qA)D101 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1r2qA)T103 because G (3-10) conformation "forbidden" or filtered. T0506 87 :ISVTL 1r2qA 95 :AAIVV T0506 94 :F 1r2qA 102 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=31776 # 1vpjA.87.133 read from T0506.t04.many.frag # found chain 1vpjA in training set Warning: unaligning (T0506)P93 (1vpjA)G128 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1vpjA)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 87 :ISVTLA 1vpjA 122 :AYFAFT T0506 95 :G 1vpjA 130 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=31778 # 2apjA.87.112 read from T0506.t04.many.frag # found chain 2apjA in template set T0506 87 :ISVTLAPFG 2apjA 113 :IGLVPCASG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31779 # 1m6eX.87.204 read from T0506.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0506)P93 (1m6eX)G211 because Y (epsilon') conformation "forbidden" or filtered. T0506 87 :ISVTLA 1m6eX 205 :MVLTIL T0506 94 :FG 1m6eX 212 :RR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31781 1y12A expands to /projects/compbio/data/pdb/1y12.pdb.gz 1y12A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y12A.87.84 read from T0506.t04.many.frag # adding 1y12A to template set # found chain 1y12A in template set T0506 87 :ISVTLAPFG 1y12A 82 :AKLTIRKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31782 # 1zkdA.87.236 read from T0506.t04.many.frag # found chain 1zkdA in template set Warning: unaligning (T0506)G95 (1zkdA)H245 because E (beta_S) conformation "forbidden" or filtered. T0506 87 :ISVTLAPF 1zkdA 237 :AALIIDYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=31783 # 1jl0A.87.252 read from T0506.t04.many.frag # found chain 1jl0A in training set T0506 87 :ISVTLAPFG 1jl0A 253 :VSFETNLSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31784 # 1vliA.87.187 read from T0506.t04.many.frag # found chain 1vliA in template set Warning: unaligning (T0506)A92 (1vliA)C181 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1vliA)V182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1vliA)K184 because P (beta_P) conformation "forbidden" or filtered. T0506 87 :ISVTL 1vliA 176 :IAIMH T0506 94 :F 1vliA 183 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=31786 # 1oi0A.88.93 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)F94 (1oi0A)P100 because C (cis) conformation "forbidden" or filtered. T0506 88 :SVTLAP 1oi0A 94 :HIIVCY T0506 95 :GK 1oi0A 101 :YD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31788 # 2bbhA.88.138 read from T0506.t04.many.frag # found chain 2bbhA in template set Warning: unaligning (T0506)G95 (2bbhA)I143 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (2bbhA)G144 because S (epsilon) conformation "forbidden" or filtered. T0506 88 :SVTLAPF 2bbhA 136 :VLMFQEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=31789 # 1w6gA.88.58 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)P93 (1w6gA)D66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1w6gA)G69 because T (delta_L) conformation "forbidden" or filtered. T0506 88 :SVTLA 1w6gA 61 :RVFIH T0506 94 :FG 1w6gA 67 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=31791 # 1b25A.88.107 read from T0506.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0506)S88 (1b25A)A108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1b25A)A115 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1b25A 109 :LVVEGK T0506 96 :K 1b25A 116 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=31793 # 1k8kC.88.120 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P93 (1k8kC)E126 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLA 1k8kC 121 :SICYF T0506 94 :FGK 1k8kC 127 :QEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31795 # 1wvqA.88.48 read from T0506.t04.many.frag # found chain 1wvqA in template set Warning: unaligning (T0506)A92 (1wvqA)C53 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1wvqA)G57 because S (epsilon) conformation "forbidden" or filtered. T0506 88 :SVTL 1wvqA 49 :GIAF T0506 93 :PFG 1wvqA 54 :EAS Number of specific fragments extracted= 2 number of extra gaps= 2 total=31797 # 1vl7A.88.79 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 88 :SVTLAPFGK 1vl7A 68 :NVLFVDDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=31798 # 2bghA.88.41 read from T0506.t04.many.frag # found chain 2bghA in template set T0506 88 :SVTLAPFGK 2bghA 42 :FILFYPNPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=31799 # 1uarA.88.24 read from T0506.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)A92 (1uarA)V29 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1uarA)D30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1uarA)D32 because N (gamma') conformation "forbidden" or filtered. T0506 88 :SVTL 1uarA 25 :RVLE T0506 94 :F 1uarA 31 :E T0506 96 :K 1uarA 33 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=31802 # 1fjgP.88.17 read from T0506.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0506)A92 (1fjgP)T22 because Y (epsilon') conformation "forbidden" or filtered. T0506 88 :SVTL 1fjgP 18 :RIVV T0506 93 :PFGK 1fjgP 23 :DARR Number of specific fragments extracted= 2 number of extra gaps= 1 total=31804 # 1ty9A.88.105 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P93 (1ty9A)W111 because D (zeta) conformation "forbidden" or filtered. T0506 88 :SVTLA 1ty9A 106 :SGVLY T0506 94 :FGK 1ty9A 112 :RET Number of specific fragments extracted= 2 number of extra gaps= 1 total=31806 # 2fb5A.88.93 read from T0506.t04.many.frag # found chain 2fb5A in template set T0506 88 :SVTLAPFGK 2fb5A 94 :ALIVVERNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=31807 # 1e2wA.88.71 read from T0506.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)S88 (1e2wA)G72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1e2wA)I76 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1e2wA)E79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1e2wA)G80 because T (delta_L) conformation "forbidden" or filtered. T0506 89 :VTL 1e2wA 73 :MVL T0506 93 :PF 1e2wA 77 :LP Number of specific fragments extracted= 2 number of extra gaps= 3 total=31809 # 1i88A.88.220 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1i88A)D227 because L (left) conformation "forbidden" or filtered. T0506 88 :SVTL 1i88A 221 :ALIV T0506 93 :P 1i88A 226 :S T0506 95 :GK 1i88A 228 :PV Number of specific fragments extracted= 3 number of extra gaps= 2 total=31812 # 1g5tA.88.59 read from T0506.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)P93 (1g5tA)I65 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLA 1g5tA 60 :GVVQF T0506 94 :FGK 1g5tA 66 :KGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31814 # 1nz0A.88.33 read from T0506.t04.many.frag # found chain 1nz0A in training set Warning: unaligning (T0506)S88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nz0A)V33 T0506 89 :VTLAPFGK 1nz0A 34 :VLFRKNGM Number of specific fragments extracted= 1 number of extra gaps= 1 total=31815 # 1c93A.88.81 read from T0506.t04.many.frag # found chain 1c93A in template set Warning: unaligning (T0506)F94 (1c93A)N93 because G (3-10) conformation "forbidden" or filtered. T0506 88 :SVTLAP 1c93A 87 :LLSVLG T0506 95 :GK 1c93A 94 :HQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=31817 # 1nar.88.80 read from T0506.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0506)P93 (1nar)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 88 :SVTLA 1nar 81 :VISIG T0506 94 :FGK 1nar 87 :RGV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31819 # 1nezG.88.36 read from T0506.t04.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)G95 (1nezG)S44 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1nezG)S45 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLAPF 1nezG 37 :SWLFQNS Number of specific fragments extracted= 1 number of extra gaps= 1 total=31820 # 1zavA.88.83 read from T0506.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0506)P93 (1zavA)T88 because G (3-10) conformation "forbidden" or filtered. T0506 88 :SVTLA 1zavA 83 :AVLYV T0506 94 :FGK 1zavA 89 :EGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31822 # 1yacA.88.13 read from T0506.t04.many.frag # found chain 1yacA in training set Warning: unaligning (T0506)P93 (1yacA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1yacA)Q21 because P (beta_P) conformation "forbidden" or filtered. T0506 88 :SVTLA 1yacA 14 :AVLLV T0506 94 :F 1yacA 20 :H T0506 96 :K 1yacA 22 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=31825 # 1xszA.88.275 read from T0506.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)P93 (1xszA)T279 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLA 1xszA 274 :TIQVY T0506 94 :FGK 1xszA 280 :PNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31827 # 1f5mA.88.67 read from T0506.t04.many.frag # found chain 1f5mA in template set Warning: unaligning (T0506)S88 (1f5mA)G68 because Y (epsilon') conformation "forbidden" or filtered. T0506 89 :VTLAPFGK 1f5mA 69 :FYVTQASE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31828 # 1m6eX.88.205 read from T0506.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0506)P93 (1m6eX)G211 because Y (epsilon') conformation "forbidden" or filtered. T0506 88 :SVTLA 1m6eX 206 :VLTIL T0506 94 :FGK 1m6eX 212 :RRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31830 # 1y12A.88.85 read from T0506.t04.many.frag # found chain 1y12A in template set T0506 88 :SVTLAPFGK 1y12A 83 :KLTIRKAGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31831 # 1r0vA.88.117 read from T0506.t04.many.frag # found chain 1r0vA in template set Warning: unaligning (T0506)S88 because of BadResidue code BAD_PEPTIDE in next template residue (1r0vA)L119 Warning: unaligning (T0506)V89 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)L119 Warning: unaligning (T0506)G95 (1r0vA)E125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1r0vA)S126 because L (left) conformation "forbidden" or filtered. T0506 90 :TLAPF 1r0vA 120 :AVVDE Number of specific fragments extracted= 1 number of extra gaps= 2 total=31832 # 1oi7A.88.202 read from T0506.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0506)A92 (1oi7A)G207 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1oi7A)E208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1oi7A)G211 because S (epsilon) conformation "forbidden" or filtered. T0506 88 :SVTL 1oi7A 203 :VVLI T0506 94 :FG 1oi7A 209 :IG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31834 1srqA expands to /projects/compbio/data/pdb/1srq.pdb.gz 1srqA:# 1srqA.88.219 read from T0506.t04.many.frag # adding 1srqA to template set # found chain 1srqA in template set Warning: unaligning (T0506)G95 (1srqA)N301 because P (beta_P) conformation "forbidden" or filtered. T0506 88 :SVTLAPF 1srqA 294 :AVVFQDE T0506 96 :K 1srqA 302 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=31836 # 1m2dA.88.6 read from T0506.t04.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)P93 (1m2dA)D12 because E (beta_S) conformation "forbidden" or filtered. T0506 88 :SVTLA 1m2dA 7 :FVCVQ T0506 94 :FGK 1m2dA 13 :RPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31838 # 1xg4A.88.109 read from T0506.t04.many.frag # found chain 1xg4A in training set Warning: unaligning (T0506)S88 (1xg4A)G111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A92 (1xg4A)E115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1xg4A)D116 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1xg4A)V118 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTL 1xg4A 112 :LHI T0506 94 :F 1xg4A 117 :Q T0506 96 :K 1xg4A 119 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=31841 # 1wvqA.89.49 read from T0506.t04.many.frag # found chain 1wvqA in template set Warning: unaligning (T0506)F94 (1wvqA)A55 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1wvqA)G57 because S (epsilon) conformation "forbidden" or filtered. T0506 89 :VTLAP 1wvqA 50 :IAFCE T0506 95 :G 1wvqA 56 :S T0506 97 :G 1wvqA 58 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=31844 # 1nar.89.81 read from T0506.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0506)A92 (1nar)G85 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1nar)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 89 :VTL 1nar 82 :ISI T0506 94 :FGKG 1nar 87 :RGVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=31846 # 1w6gA.89.59 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)P93 (1w6gA)D66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1w6gA)S68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1w6gA)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1w6gA)A70 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLA 1w6gA 62 :VFIH T0506 94 :F 1w6gA 67 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=31848 # 1gw5S.89.4 read from T0506.t04.many.frag # found chain 1gw5S in template set Warning: unaligning (T0506)G95 (1gw5S)A11 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1gw5S)G12 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1gw5S)K13 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1gw5S 5 :ILIQNR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31849 # 1f5mA.89.68 read from T0506.t04.many.frag # found chain 1f5mA in template set Warning: unaligning (T0506)G97 (1f5mA)E77 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPFGK 1f5mA 69 :FYVTQASE Number of specific fragments extracted= 1 number of extra gaps= 1 total=31850 # 1uarA.89.25 read from T0506.t04.many.frag # found chain 1uarA in training set Warning: unaligning (T0506)A92 (1uarA)V29 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1uarA)D30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1uarA)L34 because G (3-10) conformation "forbidden" or filtered. T0506 89 :VTL 1uarA 26 :VLE T0506 94 :FGK 1uarA 31 :EDI Number of specific fragments extracted= 2 number of extra gaps= 2 total=31852 # 1k8kC.89.121 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)P93 (1k8kC)E126 because E (beta_S) conformation "forbidden" or filtered. T0506 89 :VTLA 1k8kC 122 :ICYF T0506 94 :FGKG 1k8kC 127 :QEND Number of specific fragments extracted= 2 number of extra gaps= 1 total=31854 # 1ty9A.89.106 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P93 (1ty9A)W111 because D (zeta) conformation "forbidden" or filtered. T0506 89 :VTLA 1ty9A 107 :GVLY T0506 94 :FGKG 1ty9A 112 :RETS Number of specific fragments extracted= 2 number of extra gaps= 1 total=31856 # 1r0vA.89.118 read from T0506.t04.many.frag # found chain 1r0vA in template set Warning: unaligning (T0506)V89 because of BadResidue code BAD_PEPTIDE at template residue (1r0vA)L119 Warning: unaligning (T0506)A92 (1r0vA)V122 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1r0vA)S126 because L (left) conformation "forbidden" or filtered. T0506 90 :TL 1r0vA 120 :AV T0506 93 :PFG 1r0vA 123 :DEE T0506 97 :G 1r0vA 127 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=31859 # 1v0aA.89.54 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)G97 (1v0aA)G63 because G (3-10) conformation "forbidden" or filtered. T0506 89 :VTLAPFGK 1v0aA 55 :GTVYSLPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31860 # 1m6eX.89.206 read from T0506.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0506)P93 (1m6eX)G211 because Y (epsilon') conformation "forbidden" or filtered. T0506 89 :VTLA 1m6eX 207 :LTIL T0506 94 :FGKG 1m6eX 212 :RRSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31862 # 1fjgP.89.18 read from T0506.t04.many.frag # found chain 1fjgP in template set Warning: unaligning (T0506)G97 (1fjgP)K27 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPFGK 1fjgP 19 :IVVTDARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31863 # 1yacA.89.14 read from T0506.t04.many.frag # found chain 1yacA in training set Warning: unaligning (T0506)A92 (1yacA)V18 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1yacA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1yacA)Q21 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTL 1yacA 15 :VLL T0506 94 :F 1yacA 20 :H T0506 96 :KG 1yacA 22 :AG Number of specific fragments extracted= 3 number of extra gaps= 2 total=31866 # 1oi7A.89.203 read from T0506.t04.many.frag # found chain 1oi7A in training set Warning: unaligning (T0506)A92 (1oi7A)G207 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1oi7A)E208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1oi7A)S212 because G (3-10) conformation "forbidden" or filtered. T0506 89 :VTL 1oi7A 204 :VLI T0506 94 :FGK 1oi7A 209 :IGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31868 # 1x99A.89.68 read from T0506.t04.many.frag # found chain 1x99A in training set Warning: unaligning (T0506)A92 (1x99A)G72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1x99A)V73 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1x99A)Y76 because T (delta_L) conformation "forbidden" or filtered. T0506 89 :VTL 1x99A 69 :VAV T0506 94 :FG 1x99A 74 :HN T0506 97 :G 1x99A 77 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=31871 2b18A expands to /projects/compbio/data/pdb/2b18.pdb.gz 2b18A:Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 206, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 208, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 643, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1158, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1160, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 2b18A Skipped atom 1180, because occupancy 0.500 <= existing 0.500 in 2b18A # 2b18A.89.47 read from T0506.t04.many.frag # adding 2b18A to template set # found chain 2b18A in template set Warning: unaligning (T0506)K96 (2b18A)G46 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (2b18A)K47 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPFG 2b18A 39 :IFVVSRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=31872 # 1b25A.89.108 read from T0506.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0506)P93 (1b25A)G113 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1b25A)A115 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLA 1b25A 109 :LVVE T0506 94 :F 1b25A 114 :K T0506 96 :KG 1b25A 116 :KK Number of specific fragments extracted= 3 number of extra gaps= 2 total=31875 # 1e2wA.89.72 read from T0506.t04.many.frag # found chain 1e2wA in training set Warning: unaligning (T0506)V89 (1e2wA)M73 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1e2wA)E79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1e2wA)F81 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLAPF 1e2wA 74 :VLILP T0506 96 :K 1e2wA 80 :G Number of specific fragments extracted= 2 number of extra gaps= 3 total=31877 # 2a74A.89.34 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)G95 (2a74A)P41 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (2a74A)G42 because S (epsilon) conformation "forbidden" or filtered. T0506 89 :VTLAPF 2a74A 35 :VTVHDF T0506 97 :G 2a74A 43 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=31879 1z4rA expands to /projects/compbio/data/pdb/1z4r.pdb.gz 1z4rA:# 1z4rA.89.68 read from T0506.t04.many.frag # adding 1z4rA to template set # found chain 1z4rA in template set Warning: unaligning (T0506)L91 (1z4rA)F565 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1z4rA)F568 because D (zeta) conformation "forbidden" or filtered. T0506 89 :VT 1z4rA 563 :IC T0506 92 :AP 1z4rA 566 :RM T0506 95 :GKG 1z4rA 569 :PTQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=31882 # 1vprA.89.261 read from T0506.t04.many.frag # found chain 1vprA in training set T0506 89 :VTLAPFGKG 1vprA 1127 :GFFWEMESG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31883 # 1oi0A.89.94 read from T0506.t04.many.frag # found chain 1oi0A in training set Warning: unaligning (T0506)F94 (1oi0A)P100 because C (cis) conformation "forbidden" or filtered. T0506 89 :VTLAP 1oi0A 95 :IIVCY T0506 95 :GKG 1oi0A 101 :YDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=31885 # 1wcdJ.89.69 read from T0506.t04.many.frag # found chain 1wcdJ in template set T0506 89 :VTLAPFGKG 1wcdJ 70 :AHYTLQGNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31886 # 1xszA.89.276 read from T0506.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)P93 (1xszA)T279 because E (beta_S) conformation "forbidden" or filtered. T0506 89 :VTLA 1xszA 275 :IQVY T0506 94 :FGKG 1xszA 280 :PNIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=31888 # 2bghA.89.42 read from T0506.t04.many.frag # found chain 2bghA in template set Warning: unaligning (T0506)G95 (2bghA)P49 because P (beta_P) conformation "forbidden" or filtered. T0506 89 :VTLAPF 2bghA 43 :ILFYPN T0506 96 :KG 2bghA 50 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31890 # 2fb5A.89.94 read from T0506.t04.many.frag # found chain 2fb5A in template set T0506 89 :VTLAPFGKG 2fb5A 95 :LIVVERNET Number of specific fragments extracted= 1 number of extra gaps= 0 total=31891 1wmxA expands to /projects/compbio/data/pdb/1wmx.pdb.gz 1wmxA:# 1wmxA.89.88 read from T0506.t04.many.frag # adding 1wmxA to template set # found chain 1wmxA in template set Warning: unaligning (T0506)A92 (1wmxA)K92 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1wmxA)G93 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wmxA)G97 Warning: unaligning (T0506)G97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wmxA)G97 T0506 89 :VTL 1wmxA 89 :FDI T0506 94 :FG 1wmxA 94 :KE Number of specific fragments extracted= 2 number of extra gaps= 2 total=31893 # 1c93A.89.82 read from T0506.t04.many.frag # found chain 1c93A in template set T0506 89 :VTLAPFGKG 1c93A 88 :LSVLGNHQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=31894 # 1ospO.89.82 read from T0506.t04.many.frag # found chain 1ospO in template set Warning: unaligning (T0506)G95 (1ospO)D105 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1ospO)K107 because G (3-10) conformation "forbidden" or filtered. T0506 89 :VTLAPF 1ospO 99 :LEVFKE T0506 96 :K 1ospO 106 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31896 1pl3A expands to /projects/compbio/data/pdb/1pl3.pdb.gz 1pl3A:Bad short name: OE for alphabet: pdb_atoms # 1pl3A.89.70 read from T0506.t04.many.frag # adding 1pl3A to template set # found chain 1pl3A in template set T0506 89 :VTLAPFGKG 1pl3A 71 :LVAWANGNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=31897 # 1nar.90.82 read from T0506.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0506)P93 (1nar)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 90 :TLA 1nar 83 :SIG T0506 94 :FGKGD 1nar 87 :RGVNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31899 # 1wvqA.90.50 read from T0506.t04.many.frag # found chain 1wvqA in template set Warning: unaligning (T0506)G95 (1wvqA)S56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1wvqA)G57 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1wvqA)R59 because L (left) conformation "forbidden" or filtered. T0506 90 :TLAPF 1wvqA 51 :AFCEA T0506 97 :G 1wvqA 58 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=31901 # 2carA.90.120 read from T0506.t04.many.frag # found chain 2carA in template set Warning: unaligning (T0506)A92 (2carA)S121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 90 :TL 2carA 119 :AL Number of specific fragments extracted= 1 number of extra gaps= 1 total=31902 # 1azo.90.125 read from T0506.t04.many.frag # found chain 1azo in training set T0506 90 :TLAPFGKGD 1azo 123 :IPVEGEASI Number of specific fragments extracted= 1 number of extra gaps= 0 total=31903 1u7zA expands to /projects/compbio/data/pdb/1u7z.pdb.gz 1u7zA:# 1u7zA.90.171 read from T0506.t04.many.frag # adding 1u7zA to template set # found chain 1u7zA in template set Warning: unaligning (T0506)P93 (1u7zA)V355 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1u7zA)Q357 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1u7zA)T359 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1u7zA)Q360 because Y (epsilon') conformation "forbidden" or filtered. T0506 90 :TLA 1u7zA 352 :AND T0506 94 :F 1u7zA 356 :S T0506 96 :K 1u7zA 358 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=31906 # 1v0aA.90.55 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)K96 (1v0aA)D62 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLAPFG 1v0aA 56 :TVYSLP T0506 97 :GD 1v0aA 63 :GD Number of specific fragments extracted= 2 number of extra gaps= 1 total=31908 # 1yacA.90.15 read from T0506.t04.many.frag # found chain 1yacA in training set Warning: unaligning (T0506)P93 (1yacA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1yacA)Q21 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLA 1yacA 16 :LLV T0506 94 :F 1yacA 20 :H T0506 96 :KGD 1yacA 22 :AGL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31911 # 1r4xA.90.108 read from T0506.t04.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)G95 (1r4xA)P713 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1r4xA)D716 because D (zeta) conformation "forbidden" or filtered. T0506 90 :TLAPF 1r4xA 708 :TLVAL T0506 96 :KG 1r4xA 714 :KE Number of specific fragments extracted= 2 number of extra gaps= 2 total=31913 # 1m2dA.90.8 read from T0506.t04.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)P93 (1m2dA)D12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1m2dA)P14 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLA 1m2dA 9 :CVQ T0506 94 :F 1m2dA 13 :R T0506 96 :KGD 1m2dA 15 :PGH Number of specific fragments extracted= 3 number of extra gaps= 2 total=31916 # 1w6gA.90.60 read from T0506.t04.many.frag # found chain 1w6gA in template set Warning: unaligning (T0506)P93 (1w6gA)D66 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1w6gA)S68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1w6gA)G69 because T (delta_L) conformation "forbidden" or filtered. T0506 90 :TLA 1w6gA 63 :FIH T0506 94 :F 1w6gA 67 :V T0506 97 :GD 1w6gA 70 :AR Number of specific fragments extracted= 3 number of extra gaps= 2 total=31919 # 1nxmA.90.94 read from T0506.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0506)G97 (1nxmA)G102 because S (epsilon) conformation "forbidden" or filtered. T0506 90 :TLAPFGK 1nxmA 95 :TWVDLRE T0506 98 :D 1nxmA 103 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=31921 1xovA expands to /projects/compbio/data/pdb/1xov.pdb.gz 1xovA:# 1xovA.90.88 read from T0506.t04.many.frag # adding 1xovA to template set # found chain 1xovA in template set Warning: unaligning (T0506)P93 (1xovA)L80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xovA)G85 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xovA)G85 T0506 90 :TLA 1xovA 77 :SVH T0506 94 :FGK 1xovA 81 :NAG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31923 # 1b25A.90.109 read from T0506.t04.many.frag # found chain 1b25A in template set Warning: unaligning (T0506)P93 (1b25A)G113 because S (epsilon) conformation "forbidden" or filtered. T0506 90 :TLA 1b25A 110 :VVE T0506 94 :FGKGD 1b25A 114 :KAKKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=31925 # 1k4nA.90.100 read from T0506.t04.many.frag # found chain 1k4nA in training set Warning: unaligning (T0506)G97 (1k4nA)K108 because P (beta_P) conformation "forbidden" or filtered. T0506 90 :TLAPFGK 1k4nA 101 :ELPWPGE T0506 98 :D 1k4nA 109 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=31927 # 2bghA.90.43 read from T0506.t04.many.frag # found chain 2bghA in template set T0506 90 :TLAPFGKGD 2bghA 44 :LFYPNPLDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=31928 # 2apjA.90.115 read from T0506.t04.many.frag # found chain 2apjA in template set Warning: unaligning (T0506)G95 (2apjA)G121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (2apjA)G122 because T (delta_L) conformation "forbidden" or filtered. T0506 90 :TLAPF 2apjA 116 :VPCAS T0506 97 :GD 2apjA 123 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=31930 # 1l8bA.90.18 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLA 1l8bA 46 :WFF T0506 94 :FGKGD 1l8bA 50 :NDKSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31932 # 1zgkA.90.280 read from T0506.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0506)P93 (1zgkA)D585 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLA 1zgkA 582 :ECY T0506 94 :FGKGD 1zgkA 586 :PDTDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=31934 # 1k8kC.90.122 read from T0506.t04.many.frag # found chain 1k8kC in template set Warning: unaligning (T0506)A92 (1k8kC)F125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1k8kC)E126 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TL 1k8kC 123 :CY T0506 94 :FGKGD 1k8kC 127 :QENDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=31936 # 1rx0A.90.180 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)A92 (1rx0A)C183 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1rx0A)P188 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1rx0A)G189 because S (epsilon) conformation "forbidden" or filtered. T0506 90 :TL 1rx0A 181 :VM T0506 93 :PFGK 1rx0A 184 :RTGG Number of specific fragments extracted= 2 number of extra gaps= 2 total=31938 # 2b20A.90.94 read from T0506.t04.many.frag # found chain 2b20A in template set T0506 90 :TLAPFGKGD 2b20A 92 :CFIPTERDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=31939 # 1zl0A.90.83 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)G95 (1zl0A)G87 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zl0A)G90 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zl0A)G90 T0506 90 :TLAPF 1zl0A 82 :VWCLR T0506 96 :K 1zl0A 88 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=31941 1tz9A expands to /projects/compbio/data/pdb/1tz9.pdb.gz 1tz9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1tz9A.90.38 read from T0506.t04.many.frag # adding 1tz9A to template set # found chain 1tz9A in template set Warning: unaligning (T0506)P93 (1tz9A)T32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1tz9A)K36 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1tz9A)L37 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLA 1tz9A 29 :VVG T0506 94 :FGK 1tz9A 33 :LLN Number of specific fragments extracted= 2 number of extra gaps= 2 total=31943 # 1kptA.90.82 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)G95 (1kptA)A88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1kptA)G89 because L (left) conformation "forbidden" or filtered. T0506 90 :TLAPF 1kptA 83 :SDPLY T0506 97 :GD 1kptA 90 :ND Number of specific fragments extracted= 2 number of extra gaps= 1 total=31945 # 1r6lA.90.188 read from T0506.t04.many.frag # found chain 1r6lA in template set Warning: unaligning (T0506)P93 (1r6lA)M192 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLA 1r6lA 189 :NVV T0506 94 :FGKGD 1r6lA 193 :TDAGG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31947 1ykjA expands to /projects/compbio/data/pdb/1ykj.pdb.gz 1ykjA:# 1ykjA.90.221 read from T0506.t04.many.frag # adding 1ykjA to template set # found chain 1ykjA in template set Warning: unaligning (T0506)P93 (1ykjA)V1225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1ykjA)K1230 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLA 1ykjA 1222 :YVQ T0506 94 :FGKG 1ykjA 1226 :PLSE Number of specific fragments extracted= 2 number of extra gaps= 2 total=31949 1ixmA expands to /projects/compbio/data/pdb/1ixm.pdb.gz 1ixmA:# 1ixmA.90.135 read from T0506.t04.many.frag # adding 1ixmA to template set # found chain 1ixmA in template set Warning: unaligning (T0506)D98 (1ixmA)R144 because E (beta_S) conformation "forbidden" or filtered. T0506 90 :TLAPFGKG 1ixmA 136 :SLQTDHPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=31950 # 1m6eX.90.207 read from T0506.t04.many.frag # found chain 1m6eX in template set Warning: unaligning (T0506)P93 (1m6eX)G211 because Y (epsilon') conformation "forbidden" or filtered. T0506 90 :TLA 1m6eX 208 :TIL T0506 94 :FGKGD 1m6eX 212 :RRSED Number of specific fragments extracted= 2 number of extra gaps= 1 total=31952 # 1z4rA.90.69 read from T0506.t04.many.frag # found chain 1z4rA in template set Warning: unaligning (T0506)L91 (1z4rA)F565 because Y (epsilon') conformation "forbidden" or filtered. T0506 90 :T 1z4rA 564 :C T0506 92 :APFGKGD 1z4rA 566 :RMFPTQG Number of specific fragments extracted= 2 number of extra gaps= 1 total=31954 # 2a74A.90.35 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)G95 (2a74A)P41 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (2a74A)G42 because S (epsilon) conformation "forbidden" or filtered. T0506 90 :TLAPF 2a74A 36 :TVHDF T0506 97 :GD 2a74A 43 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=31956 # 1nar.91.83 read from T0506.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0506)P93 (1nar)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1nar)G88 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LA 1nar 84 :IG T0506 94 :F 1nar 87 :R T0506 96 :KGDA 1nar 89 :VNTP Number of specific fragments extracted= 3 number of extra gaps= 2 total=31959 # 2carA.91.121 read from T0506.t04.many.frag # found chain 2carA in template set Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 Warning: unaligning (T0506)A99 (2carA)P128 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LA 2carA 120 :LS Number of specific fragments extracted= 1 number of extra gaps= 1 total=31960 # 1r4xA.91.109 read from T0506.t04.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)G95 (1r4xA)P713 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1r4xA)D716 because D (zeta) conformation "forbidden" or filtered. T0506 91 :LAPF 1r4xA 709 :LVAL T0506 96 :KG 1r4xA 714 :KE T0506 99 :A 1r4xA 717 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=31963 # 1yacA.91.16 read from T0506.t04.many.frag # found chain 1yacA in training set Warning: unaligning (T0506)P93 (1yacA)D19 because L (left) conformation "forbidden" or filtered. T0506 91 :LA 1yacA 17 :LV T0506 94 :FGKGDA 1yacA 20 :HQAGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31965 # 1azo.91.126 read from T0506.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0506)A92 (1azo)V125 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1azo)E128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1azo)I131 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :L 1azo 124 :P T0506 93 :PF 1azo 126 :EG T0506 96 :KG 1azo 129 :AS T0506 99 :A 1azo 132 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=31969 # 1v0aA.91.56 read from T0506.t04.many.frag # found chain 1v0aA in template set T0506 91 :LAPFGKGDA 1v0aA 57 :VYSLPDGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=31970 # 1kptA.91.83 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)G95 (1kptA)A88 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LAPF 1kptA 84 :DPLY T0506 96 :KGDA 1kptA 89 :GNDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=31972 # 1u7zA.91.172 read from T0506.t04.many.frag # found chain 1u7zA in template set Warning: unaligning (T0506)P93 (1u7zA)V355 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1u7zA)Q360 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1u7zA)G361 because S (epsilon) conformation "forbidden" or filtered. T0506 91 :LA 1u7zA 353 :ND T0506 94 :FGKG 1u7zA 356 :SQPT Number of specific fragments extracted= 2 number of extra gaps= 2 total=31974 # 1zgkA.91.281 read from T0506.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0506)P93 (1zgkA)D585 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1zgkA 583 :CY T0506 94 :FGKGDA 1zgkA 586 :PDTDTW Number of specific fragments extracted= 2 number of extra gaps= 1 total=31976 # 1m2dA.91.9 read from T0506.t04.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)A92 (1m2dA)Q11 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1m2dA)D12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1m2dA)P14 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :L 1m2dA 10 :V T0506 94 :F 1m2dA 13 :R T0506 96 :KGDA 1m2dA 15 :PGHP Number of specific fragments extracted= 3 number of extra gaps= 2 total=31979 # 1wvqA.91.51 read from T0506.t04.many.frag # found chain 1wvqA in template set Warning: unaligning (T0506)F94 (1wvqA)A55 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1wvqA)G57 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1wvqA)R59 because L (left) conformation "forbidden" or filtered. T0506 91 :LAP 1wvqA 52 :FCE T0506 95 :G 1wvqA 56 :S T0506 97 :G 1wvqA 58 :K T0506 99 :A 1wvqA 60 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=31983 # 1azo.91.127 read from T0506.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0506)P93 (1azo)G127 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1azo)I131 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1azo 125 :VE T0506 94 :FGK 1azo 128 :EAS T0506 98 :DA 1azo 132 :PL Number of specific fragments extracted= 3 number of extra gaps= 2 total=31986 # 2apjA.91.116 read from T0506.t04.many.frag # found chain 2apjA in template set Warning: unaligning (T0506)K96 (2apjA)G122 because T (delta_L) conformation "forbidden" or filtered. T0506 91 :LAPFG 2apjA 117 :PCASG T0506 97 :GDA 2apjA 123 :TAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=31988 # 2akaB.91.167 read from T0506.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0506)P93 (2akaB)S175 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 2akaB 173 :AV T0506 94 :FGKGDA 2akaB 176 :PANSDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=31990 # 1l8bA.91.19 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1l8bA)S53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1l8bA)K54 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1l8bA 47 :FF T0506 94 :FGK 1l8bA 50 :NDK T0506 99 :A 1l8bA 55 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=31993 # 1tz9A.91.39 read from T0506.t04.many.frag # found chain 1tz9A in template set Warning: unaligning (T0506)P93 (1tz9A)T32 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1tz9A)K36 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LA 1tz9A 30 :VG T0506 94 :FGK 1tz9A 33 :LLN T0506 98 :DA 1tz9A 37 :LP Number of specific fragments extracted= 3 number of extra gaps= 2 total=31996 # 1nxmA.91.95 read from T0506.t04.many.frag # found chain 1nxmA in training set Warning: unaligning (T0506)G97 (1nxmA)G102 because S (epsilon) conformation "forbidden" or filtered. T0506 91 :LAPFGK 1nxmA 96 :WVDLRE T0506 98 :DA 1nxmA 103 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=31998 # 1i88A.91.223 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A92 (1i88A)G225 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 (1i88A)D227 because L (left) conformation "forbidden" or filtered. T0506 91 :L 1i88A 224 :V T0506 93 :P 1i88A 226 :S T0506 95 :GKGDA 1i88A 228 :PVPEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=32001 # 1k4nA.91.101 read from T0506.t04.many.frag # found chain 1k4nA in training set Warning: unaligning (T0506)G95 (1k4nA)G106 because Y (epsilon') conformation "forbidden" or filtered. T0506 91 :LAPF 1k4nA 102 :LPWP T0506 96 :KGDA 1k4nA 107 :EKRY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32003 # 1ykjA.91.222 read from T0506.t04.many.frag # found chain 1ykjA in template set Warning: unaligning (T0506)P93 (1ykjA)V1225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1ykjA)E1229 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LA 1ykjA 1223 :VQ T0506 94 :FGK 1ykjA 1226 :PLS T0506 98 :DA 1ykjA 1230 :KV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32006 # 1pgl1.91.75 read from T0506.t04.many.frag # found chain 1pgl1 in template set Warning: unaligning (T0506)G97 (1pgl1)V82 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LAPFGK 1pgl1 76 :MSGNAA T0506 98 :DA 1pgl1 83 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32008 # 1zl0A.91.84 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zl0A)G90 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zl0A)G90 T0506 91 :LAPFGK 1zl0A 83 :WCLRGG T0506 99 :A 1zl0A 91 :C Number of specific fragments extracted= 2 number of extra gaps= 1 total=32010 2et1A expands to /projects/compbio/data/pdb/2et1.pdb.gz 2et1A:# 2et1A.91.105 read from T0506.t04.many.frag # adding 2et1A to template set # found chain 2et1A in template set Warning: unaligning (T0506)P93 (2et1A)I108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (2et1A)S111 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LA 2et1A 106 :VG T0506 94 :FG 2et1A 109 :LG T0506 97 :GDA 2et1A 112 :LDS Number of specific fragments extracted= 3 number of extra gaps= 2 total=32013 # 1rx0A.91.181 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)K96 (1rx0A)G187 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :LAPFG 1rx0A 182 :MCRTG T0506 97 :GDA 1rx0A 188 :PGP Number of specific fragments extracted= 2 number of extra gaps= 1 total=32015 # 1xrkA.91.49 read from T0506.t04.many.frag # found chain 1xrkA in training set Warning: unaligning (T0506)G95 (1xrkA)Q54 because G (3-10) conformation "forbidden" or filtered. T0506 91 :LAPF 1xrkA 50 :ISAV T0506 96 :KGDA 1xrkA 55 :DQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32017 # 1ts9A.91.21 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)P93 (1ts9A)E24 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1ts9A 22 :VV T0506 94 :FGKGDA 1ts9A 25 :SPNHSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32019 # 1uasA.91.92 read from T0506.t04.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)P93 (1uasA)D95 because E (beta_S) conformation "forbidden" or filtered. T0506 91 :LA 1uasA 93 :YS T0506 94 :FGKGDA 1uasA 96 :AGSQTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=32021 # 1crzA.91.90 read from T0506.t04.many.frag # found chain 1crzA in template set T0506 91 :LAPFGKGDA 1crzA 97 :LVDTGGAPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32022 # 1cfzA.91.117 read from T0506.t04.many.frag # found chain 1cfzA in template set T0506 91 :LAPFGKGDA 1cfzA 118 :GVIPESLEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32023 # 1d02A.91.102 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)A92 (1d02A)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1d02A)E107 because P (beta_P) conformation "forbidden" or filtered. T0506 91 :L 1d02A 103 :D T0506 93 :PF 1d02A 105 :WV T0506 96 :KGDA 1d02A 108 :GKDP Number of specific fragments extracted= 3 number of extra gaps= 2 total=32026 # 2carA.92.122 read from T0506.t04.many.frag # found chain 2carA in template set Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 92 :A 2carA 121 :S T0506 99 :AL 2carA 128 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32028 # 1kptA.92.84 read from T0506.t04.many.frag # found chain 1kptA in training set T0506 92 :APFGKGDAL 1kptA 85 :PLYAGNDVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32029 # 1v0aA.92.57 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)K96 (1v0aA)D62 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :APFG 1v0aA 58 :YSLP T0506 97 :GDAL 1v0aA 63 :GDWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32031 # 1d02A.92.103 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)A92 (1d02A)G104 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1d02A)E107 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PF 1d02A 105 :WV T0506 96 :KGDAL 1d02A 108 :GKDPS Number of specific fragments extracted= 2 number of extra gaps= 2 total=32033 # 2akaB.92.168 read from T0506.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0506)P93 (2akaB)S175 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :A 2akaB 174 :V T0506 94 :FGKGDAL 2akaB 176 :PANSDLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32035 # 1yacA.92.17 read from T0506.t04.many.frag # found chain 1yacA in training set Warning: unaligning (T0506)P93 (1yacA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1yacA)G23 because H (helix) conformation "forbidden" or filtered. T0506 92 :A 1yacA 18 :V T0506 94 :FGK 1yacA 20 :HQA T0506 98 :DAL 1yacA 24 :LLS Number of specific fragments extracted= 3 number of extra gaps= 2 total=32038 # 1r4xA.92.110 read from T0506.t04.many.frag # found chain 1r4xA in template set T0506 92 :APFGKGDAL 1r4xA 710 :VALPKEDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32039 # 1azo.92.128 read from T0506.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0506)P93 (1azo)G127 because G (3-10) conformation "forbidden" or filtered. T0506 92 :A 1azo 126 :E T0506 94 :FGKGDAL 1azo 128 :EASIPLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32041 # 1azo.92.127 read from T0506.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0506)G95 (1azo)E128 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :APF 1azo 125 :VEG T0506 96 :KGDAL 1azo 129 :ASIPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32043 # 1nar.92.84 read from T0506.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0506)A92 (1nar)G85 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1nar)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1nar)N90 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FGK 1nar 87 :RGV T0506 98 :DAL 1nar 91 :TPF Number of specific fragments extracted= 2 number of extra gaps= 2 total=32045 # 1u7zA.92.173 read from T0506.t04.many.frag # found chain 1u7zA in template set Warning: unaligning (T0506)P93 (1u7zA)V355 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1u7zA)Q357 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1u7zA)T359 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1u7zA)Q360 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1u7zA)G361 because S (epsilon) conformation "forbidden" or filtered. T0506 92 :A 1u7zA 354 :D T0506 94 :F 1u7zA 356 :S T0506 96 :K 1u7zA 358 :P T0506 100 :L 1u7zA 362 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=32049 # 1pgl1.92.76 read from T0506.t04.many.frag # found chain 1pgl1 in template set Warning: unaligning (T0506)G97 (1pgl1)V82 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :APFGK 1pgl1 77 :SGNAA T0506 98 :DAL 1pgl1 83 :KRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32051 # 1zgkA.92.282 read from T0506.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0506)P93 (1zgkA)D585 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1zgkA)T590 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :A 1zgkA 584 :Y T0506 94 :FGKG 1zgkA 586 :PDTD T0506 99 :AL 1zgkA 591 :WS Number of specific fragments extracted= 3 number of extra gaps= 2 total=32054 # 2apjA.92.117 read from T0506.t04.many.frag # found chain 2apjA in template set Warning: unaligning (T0506)G95 (2apjA)G121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (2apjA)G122 because T (delta_L) conformation "forbidden" or filtered. T0506 92 :APF 2apjA 118 :CAS T0506 97 :GDAL 2apjA 123 :TAIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32056 # 1yc9A.92.19 read from T0506.t04.many.frag # found chain 1yc9A in training set Warning: unaligning (T0506)P93 because first residue in template chain is (1yc9A)W63 Warning: unaligning (T0506)G95 (1yc9A)S65 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1yc9A)N67 because N (gamma') conformation "forbidden" or filtered. T0506 94 :F 1yc9A 64 :P T0506 96 :K 1yc9A 66 :A T0506 98 :DAL 1yc9A 68 :WWQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=32059 # 1k4nA.92.102 read from T0506.t04.many.frag # found chain 1k4nA in training set T0506 92 :APFGKGDAL 1k4nA 103 :PWPGEKRYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32060 # 1l8bA.92.20 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)A92 (1l8bA)F48 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1l8bA)K52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1l8bA)S53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1l8bA)K54 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FG 1l8bA 50 :ND T0506 99 :AL 1l8bA 55 :TW Number of specific fragments extracted= 2 number of extra gaps= 2 total=32062 # 1k7cA.92.71 read from T0506.t04.many.frag # found chain 1k7cA in training set Warning: unaligning (T0506)F94 (1k7cA)N74 because G (3-10) conformation "forbidden" or filtered. T0506 92 :AP 1k7cA 72 :GH T0506 95 :GKGDAL 1k7cA 75 :DGGSLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32064 # 1i40A.92.73 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)P93 (1i40A)T75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1i40A)Y77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1i40A)P81 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :A 1i40A 74 :P T0506 94 :F 1i40A 76 :P T0506 96 :KGD 1i40A 78 :PLQ T0506 100 :L 1i40A 82 :G Number of specific fragments extracted= 4 number of extra gaps= 3 total=32068 # 1g4mA.92.128 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)G95 (1g4mA)G132 because S (epsilon) conformation "forbidden" or filtered. T0506 92 :APF 1g4mA 129 :LQP T0506 96 :KGDAL 1g4mA 133 :PEDTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32070 # 1m2dA.92.10 read from T0506.t04.many.frag # found chain 1m2dA in training set Warning: unaligning (T0506)A92 (1m2dA)Q11 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1m2dA)D12 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDAL 1m2dA 13 :RPPGHPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=32071 # 1rx0A.92.182 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)G95 (1rx0A)G186 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1rx0A)P188 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :APF 1rx0A 183 :CRT T0506 96 :K 1rx0A 187 :G T0506 98 :DAL 1rx0A 189 :GPK Number of specific fragments extracted= 3 number of extra gaps= 2 total=32074 # 1xrkA.92.50 read from T0506.t04.many.frag # found chain 1xrkA in training set Warning: unaligning (T0506)K96 (1xrkA)D55 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :APFG 1xrkA 51 :SAVQ T0506 97 :GDAL 1xrkA 56 :QVVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=32076 # 1zl0A.92.85 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1zl0A)G90 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zl0A)G90 T0506 92 :APFGK 1zl0A 84 :CLRGG T0506 99 :AL 1zl0A 91 :CG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32078 # 1wpuA.92.107 read from T0506.t04.many.frag # found chain 1wpuA in template set Warning: unaligning (T0506)A92 (1wpuA)G109 because Y (epsilon') conformation "forbidden" or filtered. T0506 93 :PFGKGDAL 1wpuA 110 :NPYESEAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32079 # 1v2bA.92.54 read from T0506.t04.many.frag # found chain 1v2bA in training set Warning: unaligning (T0506)A92 (1v2bA)T64 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1v2bA)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1v2bA)K68 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1v2bA)K69 because G (3-10) conformation "forbidden" or filtered. T0506 93 :PF 1v2bA 65 :PT T0506 98 :DAL 1v2bA 70 :SIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=32081 # 2et1A.92.106 read from T0506.t04.many.frag # found chain 2et1A in template set Warning: unaligning (T0506)P93 (2et1A)I108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (2et1A)G115 because L (left) conformation "forbidden" or filtered. T0506 92 :A 2et1A 107 :G T0506 94 :FGKGDA 2et1A 109 :LGSLDS Number of specific fragments extracted= 2 number of extra gaps= 2 total=32083 # 1f35A.92.142 read from T0506.t04.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)K96 (1f35A)G148 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1f35A)V149 because E (beta_S) conformation "forbidden" or filtered. T0506 92 :APFG 1f35A 144 :TFGE T0506 98 :DAL 1f35A 150 :EPA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32085 # 1vjhA.92.52 read from T0506.t04.many.frag # found chain 1vjhA in template set Warning: unaligning (T0506)A92 (1vjhA)Q53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P93 (1vjhA)M54 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDAL 1vjhA 55 :SGSEIQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=32086 # 1lb6A.92.65 read from T0506.t04.many.frag # found chain 1lb6A in training set Warning: unaligning (T0506)G95 (1lb6A)Q415 because P (beta_P) conformation "forbidden" or filtered. T0506 92 :APF 1lb6A 412 :HTM T0506 96 :KGDAL 1lb6A 416 :GEYDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32088 # 1kptA.93.85 read from T0506.t04.many.frag # found chain 1kptA in training set T0506 93 :PFGKGDALT 1kptA 86 :LYAGNDVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32089 # 2akaB.93.169 read from T0506.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0506)P93 (2akaB)S175 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (2akaB)S179 because Y (epsilon') conformation "forbidden" or filtered. T0506 94 :FGK 2akaB 176 :PAN T0506 98 :DALT 2akaB 180 :DLAN Number of specific fragments extracted= 2 number of extra gaps= 2 total=32091 # 1v0aA.93.58 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)G97 (1v0aA)G63 because G (3-10) conformation "forbidden" or filtered. T0506 93 :PFGK 1v0aA 59 :SLPD T0506 98 :DALT 1v0aA 64 :DWSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32093 # 1d02A.93.104 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)G95 (1d02A)E107 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1d02A)G108 because T (delta_L) conformation "forbidden" or filtered. T0506 93 :PF 1d02A 105 :WV T0506 97 :GDALT 1d02A 109 :KDPSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32095 # 1azo.93.129 read from T0506.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0506)P93 (1azo)G127 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1azo)I131 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGK 1azo 128 :EAS T0506 98 :DALT 1azo 132 :PLAQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=32097 # 2carA.93.123 read from T0506.t04.many.frag # found chain 2carA in template set Warning: unaligning (T0506)P93 (2carA)T122 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 99 :ALT 2carA 128 :PVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32098 # 1r4xA.93.111 read from T0506.t04.many.frag # found chain 1r4xA in template set Warning: unaligning (T0506)G95 (1r4xA)P713 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1r4xA)D716 because D (zeta) conformation "forbidden" or filtered. T0506 93 :PF 1r4xA 711 :AL T0506 96 :KG 1r4xA 714 :KE T0506 99 :ALT 1r4xA 717 :PTA Number of specific fragments extracted= 3 number of extra gaps= 2 total=32101 # 1azo.93.128 read from T0506.t04.many.frag # found chain 1azo in training set T0506 93 :PFGKGDALT 1azo 126 :EGEASIPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32102 # 1g4mA.93.129 read from T0506.t04.many.frag # found chain 1g4mA in template set T0506 93 :PFGKGDALT 1g4mA 130 :QPGPEDTGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32103 # 1yc9A.93.20 read from T0506.t04.many.frag # found chain 1yc9A in training set Warning: unaligning (T0506)P93 because first residue in template chain is (1yc9A)W63 Warning: unaligning (T0506)G95 (1yc9A)S65 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1yc9A 64 :P T0506 96 :KGDALT 1yc9A 66 :ANWWQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32105 # 1yacA.93.18 read from T0506.t04.many.frag # found chain 1yacA in training set Warning: unaligning (T0506)P93 (1yacA)D19 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1yacA)Q21 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1yacA 20 :H T0506 96 :KGDALT 1yacA 22 :AGLLSL Number of specific fragments extracted= 2 number of extra gaps= 2 total=32107 # 1u7zA.93.174 read from T0506.t04.many.frag # found chain 1u7zA in template set Warning: unaligning (T0506)P93 (1u7zA)V355 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G95 (1u7zA)Q357 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1u7zA)T359 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1u7zA)G361 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 (1u7zA)N363 because L (left) conformation "forbidden" or filtered. T0506 94 :F 1u7zA 356 :S T0506 96 :K 1u7zA 358 :P T0506 98 :D 1u7zA 360 :Q T0506 100 :L 1u7zA 362 :F Number of specific fragments extracted= 4 number of extra gaps= 5 total=32111 # 1i40A.93.74 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)P93 (1i40A)T75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1i40A)P78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1i40A)Q80 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FG 1i40A 76 :PY T0506 97 :G 1i40A 79 :L T0506 99 :ALT 1i40A 81 :PGS Number of specific fragments extracted= 3 number of extra gaps= 3 total=32114 # 1k7cA.93.72 read from T0506.t04.many.frag # found chain 1k7cA in training set Warning: unaligning (T0506)G95 (1k7cA)D75 because G (3-10) conformation "forbidden" or filtered. T0506 93 :PF 1k7cA 73 :HN T0506 96 :KGDALT 1k7cA 76 :GGSLST Number of specific fragments extracted= 2 number of extra gaps= 1 total=32116 # 1pgl1.93.77 read from T0506.t04.many.frag # found chain 1pgl1 in template set Warning: unaligning (T0506)G97 (1pgl1)V82 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PFGK 1pgl1 78 :GNAA T0506 98 :DALT 1pgl1 83 :KRSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32118 # 1f35A.93.143 read from T0506.t04.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)K96 (1f35A)G148 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1f35A)E150 because E (beta_S) conformation "forbidden" or filtered. T0506 93 :PFG 1f35A 145 :FGE T0506 97 :G 1f35A 149 :V T0506 99 :ALT 1f35A 151 :PAN Number of specific fragments extracted= 3 number of extra gaps= 2 total=32121 # 1zgkA.93.283 read from T0506.t04.many.frag # found chain 1zgkA in template set Warning: unaligning (T0506)P93 (1zgkA)D585 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGKGDALT 1zgkA 586 :PDTDTWSE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32122 # 1v2bA.93.55 read from T0506.t04.many.frag # found chain 1v2bA in training set Warning: unaligning (T0506)G95 (1v2bA)D67 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1v2bA)S70 because E (beta_S) conformation "forbidden" or filtered. T0506 93 :PF 1v2bA 65 :PT T0506 96 :KG 1v2bA 68 :KK T0506 99 :ALT 1v2bA 71 :ITD Number of specific fragments extracted= 3 number of extra gaps= 2 total=32125 # 1pq4A.93.29 read from T0506.t04.many.frag # found chain 1pq4A in template set Warning: unaligning (T0506)G97 (1pq4A)N80 because E (beta_S) conformation "forbidden" or filtered. T0506 93 :PFGK 1pq4A 76 :VPGN T0506 98 :DALT 1pq4A 81 :DPHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32127 # 1nar.93.85 read from T0506.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0506)P93 (1nar)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1nar)N90 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1nar)P92 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGK 1nar 87 :RGV T0506 98 :D 1nar 91 :T T0506 100 :LT 1nar 93 :FD Number of specific fragments extracted= 3 number of extra gaps= 3 total=32130 # 1kptA.93.84 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)G95 (1kptA)Y87 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1kptA)A88 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1kptA)D91 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PF 1kptA 85 :PL T0506 97 :GD 1kptA 89 :GN T0506 100 :LT 1kptA 92 :VS Number of specific fragments extracted= 3 number of extra gaps= 2 total=32133 # 2apjA.93.118 read from T0506.t04.many.frag # found chain 2apjA in template set T0506 93 :PFGKGDALT 2apjA 119 :ASGGTAIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32134 # 1l8bA.93.21 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)P93 (1l8bA)K49 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1l8bA)K52 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1l8bA)S53 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FG 1l8bA 50 :ND T0506 98 :DALT 1l8bA 54 :KTWQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=32136 # 1xewY.93.35 read from T0506.t04.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)G95 (1xewY)N1043 because D (zeta) conformation "forbidden" or filtered. T0506 93 :PF 1xewY 1041 :LE T0506 96 :KGDALT 1xewY 1044 :PEDPFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32138 # 1rx0A.93.183 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)K96 (1rx0A)G187 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PFG 1rx0A 184 :RTG T0506 97 :GDALT 1rx0A 188 :PGPKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32140 # 1k4nA.93.103 read from T0506.t04.many.frag # found chain 1k4nA in training set Warning: unaligning (T0506)G97 (1k4nA)K108 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A99 (1k4nA)Y110 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PFGK 1k4nA 104 :WPGE T0506 98 :D 1k4nA 109 :R T0506 100 :LT 1k4nA 111 :PH Number of specific fragments extracted= 3 number of extra gaps= 2 total=32143 # 1l7lA.93.98 read from T0506.t04.many.frag # found chain 1l7lA in training set Warning: unaligning (T0506)G95 (1l7lA)V101 because P (beta_P) conformation "forbidden" or filtered. T0506 93 :PF 1l7lA 99 :ND T0506 96 :KGDALT 1l7lA 102 :PGTYGN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32145 # 1n9eA.93.253 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P93 (1n9eA)D254 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1n9eA)G257 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1n9eA)R258 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FG 1n9eA 255 :MT T0506 98 :DALT 1n9eA 259 :DVSQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=32147 # 1jidA.93.69 read from T0506.t04.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P93 (1jidA)R70 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1jidA)N73 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FG 1jidA 71 :EW T0506 97 :GDALT 1jidA 74 :RDVQY Number of specific fragments extracted= 2 number of extra gaps= 2 total=32149 # 1oygA.93.100 read from T0506.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0506)G97 (1oygA)T131 because G (3-10) conformation "forbidden" or filtered. T0506 93 :PFGK 1oygA 127 :KVGE T0506 98 :DALT 1oygA 132 :SIDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32151 # 2akaB.94.170 read from T0506.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0506)G97 (2akaB)S179 because Y (epsilon') conformation "forbidden" or filtered. T0506 94 :FGK 2akaB 176 :PAN T0506 98 :DALTL 2akaB 180 :DLANS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32153 # 1kptA.94.86 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)K96 (1kptA)G89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1kptA)N90 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FG 1kptA 87 :YA T0506 98 :DALTL 1kptA 91 :DVSRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32155 # 1v0aA.94.59 read from T0506.t04.many.frag # found chain 1v0aA in template set T0506 94 :FGKGDALTL 1v0aA 60 :LPDGDWSKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=32156 # 1d02A.94.105 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)G95 (1d02A)E107 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1d02A 106 :V T0506 96 :KGDALTL 1d02A 108 :GKDPSAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32158 # 1n9eA.94.254 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)G97 (1n9eA)R258 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FGK 1n9eA 255 :MTG T0506 98 :DALTL 1n9eA 259 :DVSQW Number of specific fragments extracted= 2 number of extra gaps= 1 total=32160 # 1r4xA.94.112 read from T0506.t04.many.frag # found chain 1r4xA in template set T0506 94 :FGKGDALTL 1r4xA 712 :LPKEDPTAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32161 # 1g4mA.94.130 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)G95 (1g4mA)G132 because S (epsilon) conformation "forbidden" or filtered. T0506 94 :F 1g4mA 131 :P T0506 96 :KGDALTL 1g4mA 133 :PEDTGKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32163 # 2carA.94.124 read from T0506.t04.many.frag # found chain 2carA in template set Warning: unaligning (T0506)F94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2carA)D124 Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 T0506 99 :ALTL 2carA 128 :PVRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32164 # 1ra6A.94.312 read from T0506.t04.many.frag # found chain 1ra6A in template set Warning: unaligning (T0506)G95 (1ra6A)K314 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1ra6A)G315 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1ra6A)I316 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1ra6A 313 :Y T0506 98 :DALTL 1ra6A 317 :DLDHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32166 # 1yc9A.94.21 read from T0506.t04.many.frag # found chain 1yc9A in training set T0506 94 :FGKGDALTL 1yc9A 64 :PSANWWQRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32167 # 1pq4A.94.30 read from T0506.t04.many.frag # found chain 1pq4A in template set T0506 94 :FGKGDALTL 1pq4A 77 :PGNNDPHTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32168 # 1pbyB.94.208 read from T0506.t04.many.frag # found chain 1pbyB in training set T0506 94 :FGKGDALTL 1pbyB 209 :IDPADPTAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32169 # 1qlmA.94.194 read from T0506.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)K96 (1qlmA)E197 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1qlmA)Y198 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FG 1qlmA 195 :VL T0506 98 :DALTL 1qlmA 199 :DVTRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32171 # 1f35A.94.144 read from T0506.t04.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)G95 (1f35A)E147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1f35A)G148 because T (delta_L) conformation "forbidden" or filtered. T0506 94 :F 1f35A 146 :G T0506 97 :GDALTL 1f35A 149 :VEPANL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32173 # 1azo.94.130 read from T0506.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0506)G97 (1azo)I131 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :FGK 1azo 128 :EAS T0506 98 :DALTL 1azo 132 :PLAQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32175 1l5aA expands to /projects/compbio/data/pdb/1l5a.pdb.gz 1l5aA:# 1l5aA.94.197 read from T0506.t04.many.frag # adding 1l5aA to template set # found chain 1l5aA in template set Warning: unaligning (T0506)G97 (1l5aA)Y201 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGK 1l5aA 198 :SAT T0506 98 :DALTL 1l5aA 202 :DPQLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32177 # 1pgl1.94.78 read from T0506.t04.many.frag # found chain 1pgl1 in template set Warning: unaligning (T0506)G97 (1pgl1)V82 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGK 1pgl1 79 :NAA T0506 98 :DALTL 1pgl1 83 :KRSDW Number of specific fragments extracted= 2 number of extra gaps= 1 total=32179 # 1i40A.94.75 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)L100 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. T0506 94 :FGKGDA 1i40A 76 :PYPLQP T0506 101 :TL 1i40A 83 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32181 # 1xewY.94.36 read from T0506.t04.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)G95 (1xewY)N1043 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1xewY)G1050 because Y (epsilon') conformation "forbidden" or filtered. T0506 94 :F 1xewY 1042 :E T0506 96 :KGDALT 1xewY 1044 :PEDPFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=32183 # 1vajA.94.53 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)G97 (1vajA)P57 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FGK 1vajA 54 :YNV T0506 98 :DALTL 1vajA 58 :PQTAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32185 # 1jidA.94.70 read from T0506.t04.many.frag # found chain 1jidA in training set T0506 94 :FGKGDALTL 1jidA 71 :EWNRDVQYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32186 # 1azo.94.129 read from T0506.t04.many.frag # found chain 1azo in training set Warning: unaligning (T0506)G95 (1azo)E128 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1azo 127 :G T0506 96 :KGDALTL 1azo 129 :ASIPLAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=32188 # 1rx0A.94.184 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)F94 (1rx0A)T185 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1rx0A)G187 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1rx0A)P188 because P (beta_P) conformation "forbidden" or filtered. T0506 95 :G 1rx0A 186 :G T0506 98 :DALTL 1rx0A 189 :GPKGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32190 # 1u7zA.94.175 read from T0506.t04.many.frag # found chain 1u7zA in template set Warning: unaligning (T0506)A99 (1u7zA)G361 because S (epsilon) conformation "forbidden" or filtered. T0506 94 :FGKGD 1u7zA 356 :SQPTQ T0506 100 :LTL 1u7zA 362 :FNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32192 # 1oygA.94.101 read from T0506.t04.many.frag # found chain 1oygA in training set Warning: unaligning (T0506)G97 (1oygA)T131 because G (3-10) conformation "forbidden" or filtered. T0506 94 :FGK 1oygA 128 :VGE T0506 98 :DALTL 1oygA 132 :SIDSW Number of specific fragments extracted= 2 number of extra gaps= 1 total=32194 # 1kptA.94.85 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)G95 (1kptA)Y87 because E (beta_S) conformation "forbidden" or filtered. T0506 94 :F 1kptA 86 :L T0506 96 :KGDALTL 1kptA 88 :AGNDVSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32196 # 1k7cA.94.73 read from T0506.t04.many.frag # found chain 1k7cA in training set Warning: unaligning (T0506)K96 (1k7cA)G76 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :FG 1k7cA 74 :ND T0506 97 :GDALTL 1k7cA 77 :GSLSTD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32198 # 1xksA.94.64 read from T0506.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)K96 because of BadResidue code BAD_PEPTIDE in next template residue (1xksA)P132 Warning: unaligning (T0506)G97 because of BadResidue code BAD_PEPTIDE at template residue (1xksA)P132 T0506 94 :FG 1xksA 129 :AL T0506 98 :DALTL 1xksA 133 :ITKLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32200 # 1vd5A.94.134 read from T0506.t04.many.frag # found chain 1vd5A in training set Warning: unaligning (T0506)G95 (1vd5A)P136 because P (beta_P) conformation "forbidden" or filtered. T0506 94 :F 1vd5A 135 :G T0506 96 :KGDALTL 1vd5A 137 :KGDPENG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32202 # 2axoA.94.241 read from T0506.t04.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)L100 (2axoA)A248 because Y (epsilon') conformation "forbidden" or filtered. T0506 94 :FGKGDA 2axoA 242 :NASGDP T0506 101 :TL 2axoA 249 :AI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32204 # 1qlmA.95.195 read from T0506.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)G97 (1qlmA)Y198 because P (beta_P) conformation "forbidden" or filtered. T0506 95 :GK 1qlmA 196 :LE T0506 98 :DALTLP 1qlmA 199 :DVTRVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32206 # 1v0aA.95.60 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)P103 (1v0aA)L69 because G (3-10) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1v0aA 61 :PDGDWSKW Number of specific fragments extracted= 1 number of extra gaps= 1 total=32207 # 1n9eA.95.255 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P103 (1n9eA)K264 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1n9eA 256 :TGRDVSQW Number of specific fragments extracted= 1 number of extra gaps= 1 total=32208 # 1g4mA.95.131 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)P103 (1g4mA)C140 because Y (epsilon') conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1g4mA 132 :GPEDTGKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32209 # 2akaB.95.171 read from T0506.t04.many.frag # found chain 2akaB in template set Warning: unaligning (T0506)G97 (2akaB)S179 because Y (epsilon') conformation "forbidden" or filtered. T0506 95 :GK 2akaB 177 :AN T0506 98 :DALTLP 2akaB 180 :DLANSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32211 # 1kptA.95.87 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)K96 (1kptA)G89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1kptA)N90 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1kptA)Q96 because Y (epsilon') conformation "forbidden" or filtered. T0506 95 :G 1kptA 88 :A T0506 98 :DALTL 1kptA 91 :DVSRG Number of specific fragments extracted= 2 number of extra gaps= 2 total=32213 # 1pbyB.95.209 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)G95 (1pbyB)D210 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pbyB)R218 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1pbyB 211 :PADPTAY Number of specific fragments extracted= 1 number of extra gaps= 2 total=32214 # 1r4xA.95.113 read from T0506.t04.many.frag # found chain 1r4xA in template set T0506 95 :GKGDALTLP 1r4xA 713 :PKEDPTAVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32215 # 1l5aA.95.198 read from T0506.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0506)P103 (1l5aA)H207 because D (zeta) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1l5aA 199 :ATYDPQLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32216 # 1d02A.95.106 read from T0506.t04.many.frag # found chain 1d02A in training set Warning: unaligning (T0506)G95 (1d02A)E107 because P (beta_P) conformation "forbidden" or filtered. T0506 96 :KGDALTLP 1d02A 108 :GKDPSAGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32217 # 1ra6A.95.313 read from T0506.t04.many.frag # found chain 1ra6A in template set Warning: unaligning (T0506)K96 (1ra6A)G315 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1ra6A)I316 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1ra6A)K322 because D (zeta) conformation "forbidden" or filtered. T0506 95 :G 1ra6A 314 :K T0506 98 :DALTL 1ra6A 317 :DLDHL Number of specific fragments extracted= 2 number of extra gaps= 2 total=32219 # 1jidA.95.71 read from T0506.t04.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)G97 (1jidA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 95 :GK 1jidA 72 :WN T0506 98 :DALTL 1jidA 75 :DVQYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=32221 # 1szqA.95.309 read from T0506.t04.many.frag # found chain 1szqA in template set Warning: unaligning (T0506)G95 (1szqA)A310 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K96 (1szqA)G311 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1szqA)K312 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1szqA)E318 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DALTL 1szqA 313 :TAADI Number of specific fragments extracted= 1 number of extra gaps= 2 total=32222 # 1i40A.95.76 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)G97 (1i40A)L79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1i40A)T85 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GK 1i40A 77 :YP T0506 98 :DA 1i40A 80 :QP T0506 101 :TL 1i40A 83 :SV Number of specific fragments extracted= 3 number of extra gaps= 3 total=32225 # 2f1lA.95.43 read from T0506.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)G95 because of BadResidue code BAD_PEPTIDE at template residue (2f1lA)P32 Warning: unaligning (T0506)G97 (2f1lA)D34 because G (3-10) conformation "forbidden" or filtered. T0506 96 :K 2f1lA 33 :L T0506 98 :DALTLP 2f1lA 35 :NLLDYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=32227 # 1vl7A.95.88 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G95 (1vl7A)K77 because G (3-10) conformation "forbidden" or filtered. T0506 96 :KGDALTLP 1vl7A 78 :TNQIFARR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32228 1y7mA expands to /projects/compbio/data/pdb/1y7m.pdb.gz 1y7mA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y7mA.95.46 read from T0506.t04.many.frag # adding 1y7mA to template set # found chain 1y7mA in template set T0506 95 :GKGDALTLP 1y7mA 47 :GLPDPYTIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32229 # 2carA.95.125 read from T0506.t04.many.frag # found chain 2carA in template set Warning: unaligning (T0506)G95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)D124 Warning: unaligning (T0506)K96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)P125 Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2carA)S126 Warning: unaligning (T0506)D98 because of BadResidue code BAD_PEPTIDE at template residue (2carA)Q127 Warning: unaligning (T0506)P103 (2carA)F132 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 2carA 128 :PVRL Number of specific fragments extracted= 1 number of extra gaps= 2 total=32230 # 1vajA.95.54 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)P103 (1vajA)R63 because G (3-10) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1vajA 55 :NVPPQTAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32231 # 1kptA.95.86 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)G95 (1kptA)Y87 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDALTLP 1kptA 88 :AGNDVSRG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32232 # 1pgl1.95.79 read from T0506.t04.many.frag # found chain 1pgl1 in template set Warning: unaligning (T0506)P103 (1pgl1)A88 because D (zeta) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1pgl1 80 :AAVKRSDW Number of specific fragments extracted= 1 number of extra gaps= 1 total=32233 # 1rx0A.95.185 read from T0506.t04.many.frag # found chain 1rx0A in training set Warning: unaligning (T0506)D98 (1rx0A)G189 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1rx0A)S194 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GKG 1rx0A 186 :GGP T0506 99 :ALTL 1rx0A 190 :PKGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32235 # 1g9gA.95.113 read from T0506.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0506)P103 (1g9gA)P122 because C (cis) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1g9gA 114 :EFQDPSKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=32236 # 1xewY.95.37 read from T0506.t04.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)L102 (1xewY)G1050 because Y (epsilon') conformation "forbidden" or filtered. T0506 95 :GKGDALT 1xewY 1043 :NPEDPFS T0506 103 :P 1xewY 1051 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=32238 # 2axoA.95.242 read from T0506.t04.many.frag # found chain 2axoA in template set Warning: unaligning (T0506)L100 (2axoA)A248 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2axoA)V251 because G (3-10) conformation "forbidden" or filtered. T0506 95 :GKGDA 2axoA 243 :ASGDP T0506 101 :TL 2axoA 249 :AI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32240 # 1vd5A.95.135 read from T0506.t04.many.frag # found chain 1vd5A in training set Warning: unaligning (T0506)P103 (1vd5A)G144 because G (3-10) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1vd5A 136 :PKGDPENG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32241 3prn expands to /projects/compbio/data/pdb/3prn.pdb.gz 3prn:Warning: there is no chain 3prn will retry with 3prnA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1020, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1022, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1024, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1026, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1582, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1701, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1801, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1803, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1805, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2056, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2058, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2135, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2137, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2139, because occupancy 0.500 <= existing 0.500 in 3prn Skipped atom 2141, because occupancy 0.500 <= existing 0.500 in 3prn # 3prn.95.152 read from T0506.t04.many.frag # adding 3prn to template set # found chain 3prn in template set T0506 95 :GKGDALTLP 3prn 153 :QTVDSSLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32242 # 1f35A.95.145 read from T0506.t04.many.frag # found chain 1f35A in template set Warning: unaligning (T0506)G95 (1f35A)E147 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1f35A)K155 because D (zeta) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1f35A 148 :GVEPANL Number of specific fragments extracted= 1 number of extra gaps= 2 total=32243 # 1pq4A.95.31 read from T0506.t04.many.frag # found chain 1pq4A in template set Warning: unaligning (T0506)P103 (1pq4A)E86 because E (beta_S) conformation "forbidden" or filtered. T0506 95 :GKGDALTL 1pq4A 78 :GNNDPHTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=32244 # 1zavA.95.106 read from T0506.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0506)K96 (1zavA)K107 because L (left) conformation "forbidden" or filtered. T0506 95 :G 1zavA 106 :K T0506 97 :GDALTLP 1zavA 108 :ADLSRLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32246 # 1qlmA.96.196 read from T0506.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)K96 (1qlmA)E197 because L (left) conformation "forbidden" or filtered. T0506 97 :GDALTLPR 1qlmA 198 :YDVTRVKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=32247 # 1n9eA.96.256 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P103 (1n9eA)K264 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1n9eA 257 :GRDVSQW T0506 104 :R 1n9eA 265 :M Number of specific fragments extracted= 2 number of extra gaps= 1 total=32249 # 1pbyB.96.210 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P103 (1pbyB)R218 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1pbyB 211 :PADPTAY T0506 104 :R 1pbyB 219 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=32251 # 1g4mA.96.132 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)P103 (1g4mA)C140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1g4mA)G141 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :KGDALTL 1g4mA 133 :PEDTGKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32252 # 1jidA.96.72 read from T0506.t04.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1jidA 73 :NRDVQYR T0506 104 :R 1jidA 81 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=32254 # 1vl7A.96.89 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 96 :KGDALTLPR 1vl7A 78 :TNQIFARRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32255 # 1v0aA.96.61 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)G97 (1v0aA)G63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1v0aA)L69 because G (3-10) conformation "forbidden" or filtered. T0506 96 :K 1v0aA 62 :D T0506 98 :DALTL 1v0aA 64 :DWSKW T0506 104 :R 1v0aA 70 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=32258 # 1l5aA.96.199 read from T0506.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0506)G97 (1l5aA)Y201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1l5aA)H207 because D (zeta) conformation "forbidden" or filtered. T0506 96 :K 1l5aA 200 :T T0506 98 :DALTL 1l5aA 202 :DPQLS T0506 104 :R 1l5aA 208 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=32261 # 2f1lA.96.44 read from T0506.t04.many.frag # found chain 2f1lA in template set T0506 96 :KGDALTLPR 2f1lA 33 :LDNLLDYRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32262 # 1y7mA.96.47 read from T0506.t04.many.frag # found chain 1y7mA in template set Warning: unaligning (T0506)G97 (1y7mA)P49 because P (beta_P) conformation "forbidden" or filtered. T0506 96 :K 1y7mA 48 :L T0506 98 :DALTLPR 1y7mA 50 :DPYTIPY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32264 # 1d02A.96.107 read from T0506.t04.many.frag # found chain 1d02A in training set T0506 96 :KGDALTLPR 1d02A 108 :GKDPSAGRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32265 # 1r4xA.96.114 read from T0506.t04.many.frag # found chain 1r4xA in template set T0506 96 :KGDALTLPR 1r4xA 714 :KEDPTAVAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32266 # 1i40A.96.77 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)L100 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1i40A)T85 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDA 1i40A 78 :PLQP T0506 101 :TL 1i40A 83 :SV T0506 104 :R 1i40A 86 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=32269 # 1szqA.96.310 read from T0506.t04.many.frag # found chain 1szqA in template set Warning: unaligning (T0506)K96 (1szqA)G311 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1szqA)T313 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1szqA)E318 because G (3-10) conformation "forbidden" or filtered. T0506 97 :G 1szqA 312 :K T0506 99 :ALTL 1szqA 314 :AADI T0506 104 :R 1szqA 319 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=32272 # 1ra6A.96.314 read from T0506.t04.many.frag # found chain 1ra6A in template set Warning: unaligning (T0506)G97 (1ra6A)I316 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1ra6A)K322 because D (zeta) conformation "forbidden" or filtered. T0506 96 :K 1ra6A 315 :G T0506 98 :DALTL 1ra6A 317 :DLDHL T0506 104 :R 1ra6A 323 :M Number of specific fragments extracted= 3 number of extra gaps= 2 total=32275 # 1x6oA.96.107 read from T0506.t04.many.frag # found chain 1x6oA in training set T0506 96 :KGDALTLPR 1x6oA 100 :NEDPSLPAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=32276 # 1zavA.96.107 read from T0506.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0506)R104 (1zavA)G115 because S (epsilon) conformation "forbidden" or filtered. T0506 96 :KGDALTLP 1zavA 107 :KADLSRLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=32277 # 1kptA.96.88 read from T0506.t04.many.frag # found chain 1kptA in training set Warning: unaligning (T0506)K96 (1kptA)G89 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1kptA)G95 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1kptA)Q96 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALT 1kptA 90 :NDVSR T0506 104 :R 1kptA 97 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=32279 # 2btoA.96.307 read from T0506.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)L102 (2btoA)G314 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2btoA)R315 because E (beta_S) conformation "forbidden" or filtered. T0506 96 :KGDALT 2btoA 308 :ACSPME T0506 104 :R 2btoA 316 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=32281 # 3prn.96.153 read from T0506.t04.many.frag # found chain 3prn in template set T0506 96 :KGDALTLPR 3prn 154 :TVDSSLVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32282 # 1vd5A.96.136 read from T0506.t04.many.frag # found chain 1vd5A in training set Warning: unaligning (T0506)P103 (1vd5A)G144 because G (3-10) conformation "forbidden" or filtered. T0506 96 :KGDALTL 1vd5A 137 :KGDPENG T0506 104 :R 1vd5A 145 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=32284 # 1g9gA.96.114 read from T0506.t04.many.frag # found chain 1g9gA in template set Warning: unaligning (T0506)G97 (1g9gA)Q116 because G (3-10) conformation "forbidden" or filtered. T0506 96 :K 1g9gA 115 :F T0506 98 :DALTLPR 1g9gA 117 :DPSKYPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32286 # 1jixA.96.52 read from T0506.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0506)K96 (1jixA)E53 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1jixA)D55 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :G 1jixA 54 :V T0506 99 :ALTLPR 1jixA 56 :VNDYDR Number of specific fragments extracted= 2 number of extra gaps= 2 total=32288 # 1ovnA.96.89 read from T0506.t04.many.frag # found chain 1ovnA in template set Warning: unaligning (T0506)K96 (1ovnA)K99 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ovnA)D101 Warning: unaligning (T0506)D98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ovnA)D101 Warning: unaligning (T0506)A99 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ovnA)D102 T0506 100 :LTLPR 1ovnA 103 :KNFPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32289 # 1wcdJ.96.89 read from T0506.t04.many.frag # found chain 1wcdJ in template set T0506 96 :KGDALTLPR 1wcdJ 90 :QNLPASYNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32290 # 1ej0A.96.162 read from T0506.t04.many.frag # found chain 1ej0A in training set Warning: unaligning (T0506)G97 (1ej0A)S193 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1ej0A)R194 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1ej0A)V200 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :K 1ej0A 192 :S T0506 99 :ALTLP 1ej0A 195 :ARSRE Number of specific fragments extracted= 2 number of extra gaps= 2 total=32292 # 1mwqA.96.52 read from T0506.t04.many.frag # found chain 1mwqA in training set Warning: unaligning (T0506)D98 (1mwqA)S52 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1mwqA)T57 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1mwqA)G58 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :KG 1mwqA 50 :NP T0506 99 :ALTL 1mwqA 53 :EAGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=32294 # 1xewY.96.38 read from T0506.t04.many.frag # found chain 1xewY in template set Warning: unaligning (T0506)L102 (1xewY)G1050 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :KGDALT 1xewY 1044 :PEDPFS T0506 103 :PR 1xewY 1051 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32296 # 1vajA.96.55 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)G97 (1vajA)P57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1vajA)R63 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1vajA)G64 because Y (epsilon') conformation "forbidden" or filtered. T0506 96 :K 1vajA 56 :V T0506 98 :DALTL 1vajA 58 :PQTAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=32298 # 1ufyA.96.35 read from T0506.t04.many.frag # found chain 1ufyA in training set Warning: unaligning (T0506)K96 (1ufyA)I36 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G97 (1ufyA)Q37 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1ufyA)A44 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTLP 1ufyA 38 :SYEELA Number of specific fragments extracted= 1 number of extra gaps= 2 total=32299 # 1qlmA.97.197 read from T0506.t04.many.frag # found chain 1qlmA in template set T0506 97 :GDALTLPRL 1qlmA 198 :YDVTRVKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32300 # 1vl7A.97.90 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T101 (1vl7A)A83 because D (zeta) conformation "forbidden" or filtered. T0506 97 :GDAL 1vl7A 79 :NQIF T0506 102 :LPRL 1vl7A 84 :RRRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32302 # 2f1lA.97.45 read from T0506.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)G97 (2f1lA)D34 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (2f1lA)Y39 because D (zeta) conformation "forbidden" or filtered. T0506 98 :DALT 2f1lA 35 :NLLD T0506 103 :PRL 2f1lA 40 :RRW Number of specific fragments extracted= 2 number of extra gaps= 2 total=32304 # 1jidA.97.73 read from T0506.t04.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)G97 (1jidA)R74 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 98 :DALTL 1jidA 75 :DVQYR T0506 104 :RL 1jidA 81 :RV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32306 # 1n9eA.97.257 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P103 (1n9eA)K264 because E (beta_S) conformation "forbidden" or filtered. T0506 97 :GDALTL 1n9eA 258 :RDVSQW T0506 104 :RL 1n9eA 265 :ML Number of specific fragments extracted= 2 number of extra gaps= 1 total=32308 # 1pbyB.97.211 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)G97 (1pbyB)A212 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pbyB)R218 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DALTL 1pbyB 213 :DPTAY T0506 104 :RL 1pbyB 219 :TG Number of specific fragments extracted= 2 number of extra gaps= 2 total=32310 # 1v0aA.97.62 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)P103 (1v0aA)L69 because G (3-10) conformation "forbidden" or filtered. T0506 97 :GDALTL 1v0aA 63 :GDWSKW T0506 104 :RL 1v0aA 70 :KI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32312 # 1g4mA.97.133 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)P103 (1g4mA)C140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1g4mA)G141 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALTL 1g4mA 134 :EDTGKA T0506 105 :L 1g4mA 142 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32314 # 1l5aA.97.200 read from T0506.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0506)G97 (1l5aA)Y201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1l5aA)H207 because D (zeta) conformation "forbidden" or filtered. T0506 98 :DALTL 1l5aA 202 :DPQLS T0506 104 :RL 1l5aA 208 :AV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32316 # 1szqA.97.311 read from T0506.t04.many.frag # found chain 1szqA in template set Warning: unaligning (T0506)P103 (1szqA)E318 because G (3-10) conformation "forbidden" or filtered. T0506 97 :GDALTL 1szqA 312 :KTAADI T0506 104 :RL 1szqA 319 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32318 # 1pmhX.97.76 read from T0506.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0506)G97 (1pmhX)F77 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T101 (1pmhX)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pmhX)K83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1pmhX)S84 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DAL 1pmhX 78 :DFT T0506 102 :L 1pmhX 82 :Y T0506 105 :L 1pmhX 85 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=32321 # 1i40A.97.78 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)G97 (1i40A)L79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L100 (1i40A)G82 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1i40A)T85 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DA 1i40A 80 :QP T0506 101 :TL 1i40A 83 :SV T0506 104 :RL 1i40A 86 :RC Number of specific fragments extracted= 3 number of extra gaps= 3 total=32324 # 1x6oA.97.108 read from T0506.t04.many.frag # found chain 1x6oA in training set T0506 97 :GDALTLPRL 1x6oA 101 :EDPSLPAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32325 # 1vd5A.97.137 read from T0506.t04.many.frag # found chain 1vd5A in training set Warning: unaligning (T0506)P103 (1vd5A)G144 because G (3-10) conformation "forbidden" or filtered. T0506 97 :GDALTL 1vd5A 138 :GDPENG T0506 104 :RL 1vd5A 145 :RI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32327 1qexA expands to /projects/compbio/data/pdb/1qex.pdb.gz 1qexA:# 1qexA.97.191 read from T0506.t04.many.frag # adding 1qexA to template set # found chain 1qexA in template set Warning: unaligning (T0506)G97 (1qexA)F192 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTLPRL 1qexA 193 :HRTEYNMA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32328 # 1zavA.97.108 read from T0506.t04.many.frag # found chain 1zavA in template set Warning: unaligning (T0506)R104 (1zavA)G115 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1zavA)G116 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALTLP 1zavA 108 :ADLSRLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=32329 # 1t61A.97.213 read from T0506.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0506)L105 (1t61A)C222 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALTLPR 1t61A 214 :ELRTHVSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32330 # 2btoA.97.308 read from T0506.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)G97 (2btoA)C309 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (2btoA)G314 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2btoA)R315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (2btoA)F316 because P (beta_P) conformation "forbidden" or filtered. T0506 98 :DALT 2btoA 310 :SPME T0506 105 :L 2btoA 317 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=32332 1acc expands to /projects/compbio/data/pdb/1acc.pdb.gz 1acc:Warning: there is no chain 1acc will retry with 1accA # 1acc.97.54 read from T0506.t04.many.frag # adding 1acc to template set # found chain 1acc in template set Warning: unaligning (T0506)P103 (1acc)Q61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1acc)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1acc)A63 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDALTL 1acc 55 :SENQYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=32333 # 1szwA.97.142 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)G97 (1szwA)L121 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTLP 1szwA 122 :RLGALK T0506 105 :L 1szwA 129 :N Number of specific fragments extracted= 2 number of extra gaps= 2 total=32335 # 1ayoA.97.15 read from T0506.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)G97 (1ayoA)D18 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALT 1ayoA 19 :GPKA T0506 104 :R 1ayoA 25 :S Number of specific fragments extracted= 2 number of extra gaps= 3 total=32337 # 1ra6A.97.315 read from T0506.t04.many.frag # found chain 1ra6A in template set Warning: unaligning (T0506)G97 (1ra6A)I316 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1ra6A)K322 because D (zeta) conformation "forbidden" or filtered. T0506 98 :DALTL 1ra6A 317 :DLDHL T0506 104 :RL 1ra6A 323 :MI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32339 # 1y7mA.97.48 read from T0506.t04.many.frag # found chain 1y7mA in template set Warning: unaligning (T0506)R104 (1y7mA)Y56 because P (beta_P) conformation "forbidden" or filtered. T0506 97 :GDALTLP 1y7mA 49 :PDPYTIP T0506 105 :L 1y7mA 57 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=32341 # 1jixA.97.53 read from T0506.t04.many.frag # found chain 1jixA in training set Warning: unaligning (T0506)G97 (1jixA)V54 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D98 (1jixA)D55 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTLPRL 1jixA 56 :VNDYDRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32342 # 1o26A.97.65 read from T0506.t04.many.frag # found chain 1o26A in training set T0506 97 :GDALTLPRL 1o26A 54 :ETPFEHIVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32343 # 2bjiA.97.242 read from T0506.t04.many.frag # found chain 2bjiA in training set Warning: unaligning (T0506)L102 (2bjiA)R1248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2bjiA)R1249 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjiA)I1251 Warning: unaligning (T0506)L105 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjiA)I1251 T0506 97 :GDALT 2bjiA 1243 :FDLMS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32344 # 3prn.97.154 read from T0506.t04.many.frag # found chain 3prn in template set Warning: unaligning (T0506)G97 (3prn)V155 because P (beta_P) conformation "forbidden" or filtered. T0506 98 :DALTLPRL 3prn 156 :DSSLVTEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32345 # 1xqbA.97.48 read from T0506.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0506)D98 (1xqbA)G50 because T (delta_L) conformation "forbidden" or filtered. T0506 97 :G 1xqbA 49 :R T0506 99 :ALTLPRL 1xqbA 51 :LEQFSHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32347 # 1o6sB.97.69 read from T0506.t04.many.frag # found chain 1o6sB in training set Warning: unaligning (T0506)D98 (1o6sB)D67 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1o6sB)A72 because G (3-10) conformation "forbidden" or filtered. T0506 97 :G 1o6sB 66 :L T0506 99 :ALTL 1o6sB 68 :RERI T0506 104 :RL 1o6sB 73 :TY Number of specific fragments extracted= 3 number of extra gaps= 2 total=32350 # 2bgcA.97.77 read from T0506.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0506)T101 (2bgcA)G81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2bgcA)Y83 because Y (epsilon') conformation "forbidden" or filtered. T0506 97 :GDAL 2bgcA 77 :ETSV T0506 102 :L 2bgcA 82 :Y T0506 104 :RL 2bgcA 84 :NL Number of specific fragments extracted= 3 number of extra gaps= 2 total=32353 # 1vl7A.98.91 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 98 :DALTLPRLT 1vl7A 80 :QIFARRRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32354 # 2f1lA.98.46 read from T0506.t04.many.frag # found chain 2f1lA in template set T0506 98 :DALTLPRLT 2f1lA 35 :NLLDYRRWT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32355 # 1jidA.98.74 read from T0506.t04.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 98 :DALTL 1jidA 75 :DVQYR T0506 104 :RLT 1jidA 81 :RVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32357 # 1qlmA.98.198 read from T0506.t04.many.frag # found chain 1qlmA in template set T0506 98 :DALTLPRLT 1qlmA 199 :DVTRVKYAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32358 # 1szwA.98.143 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)A99 (1szwA)L123 because P (beta_P) conformation "forbidden" or filtered. T0506 98 :D 1szwA 122 :R T0506 100 :LTLPRLT 1szwA 124 :GALKGNA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32360 # 1g4mA.98.134 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)P103 (1g4mA)C140 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTL 1g4mA 135 :DTGKA T0506 104 :RLT 1g4mA 141 :GVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32362 # 1qexA.98.192 read from T0506.t04.many.frag # found chain 1qexA in template set T0506 98 :DALTLPRLT 1qexA 193 :HRTEYNMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32363 # 1pbyB.98.212 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)P103 (1pbyB)R218 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DALTL 1pbyB 213 :DPTAY T0506 104 :RLT 1pbyB 219 :TGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32365 # 1o26A.98.66 read from T0506.t04.many.frag # found chain 1o26A in training set T0506 98 :DALTLPRLT 1o26A 55 :TPFEHIVFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32366 # 1pmhX.98.77 read from T0506.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0506)T101 (1pmhX)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pmhX)K83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1pmhX)S84 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DAL 1pmhX 78 :DFT T0506 102 :L 1pmhX 82 :Y T0506 105 :LT 1pmhX 85 :VE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32369 # 1ayoA.98.16 read from T0506.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALT 1ayoA 19 :GPKA T0506 105 :LT 1ayoA 26 :FQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=32371 # 1i40A.98.79 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)D98 (1i40A)Q80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1i40A)T85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1i40A)C87 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1i40A 81 :PGSV T0506 104 :R 1i40A 86 :R T0506 106 :T 1i40A 88 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=32374 # 1t61A.98.214 read from T0506.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0506)L105 (1t61A)C222 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTLPR 1t61A 215 :LRTHVSR T0506 106 :T 1t61A 223 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=32376 # 1acc.98.55 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)P103 (1acc)Q61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1acc)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1acc)A63 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTL 1acc 56 :ENQYF T0506 106 :T 1acc 64 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=32378 # 1n9eA.98.258 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P103 (1n9eA)K264 because E (beta_S) conformation "forbidden" or filtered. T0506 98 :DALTL 1n9eA 259 :DVSQW T0506 104 :RLT 1n9eA 265 :MLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32380 # 1x6oA.98.109 read from T0506.t04.many.frag # found chain 1x6oA in training set T0506 98 :DALTLPRLT 1x6oA 102 :DPSLPAHLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32381 # 1o6sB.98.70 read from T0506.t04.many.frag # found chain 1o6sB in training set Warning: unaligning (T0506)P103 (1o6sB)A72 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DALTL 1o6sB 67 :DRERI T0506 104 :RLT 1o6sB 73 :TYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32383 # 1v0aA.98.63 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)P103 (1v0aA)L69 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DALTL 1v0aA 64 :DWSKW T0506 104 :RLT 1v0aA 70 :KIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32385 # 3prn.98.155 read from T0506.t04.many.frag # found chain 3prn in template set T0506 98 :DALTLPRLT 3prn 156 :DSSLVTEEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32386 # 1pguA.98.123 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)A99 (1pguA)D125 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1pguA)G128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pguA)R129 because G (3-10) conformation "forbidden" or filtered. T0506 98 :D 1pguA 124 :W T0506 100 :LT 1pguA 126 :FE T0506 104 :RLT 1pguA 130 :RLC Number of specific fragments extracted= 3 number of extra gaps= 2 total=32389 # 1kicA.98.309 read from T0506.t04.many.frag # found chain 1kicA in training set Warning: unaligning (T0506)T101 (1kicA)N301 because L (left) conformation "forbidden" or filtered. T0506 98 :DAL 1kicA 298 :DAE T0506 102 :LPRLT 1kicA 302 :YPLTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32391 # 2bgcA.98.78 read from T0506.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0506)A99 (2bgcA)S79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2bgcA)Y83 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :D 2bgcA 78 :T T0506 100 :LTL 2bgcA 80 :VGY T0506 104 :RLT 2bgcA 84 :NLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32394 # 1szqA.98.312 read from T0506.t04.many.frag # found chain 1szqA in template set Warning: unaligning (T0506)P103 (1szqA)E318 because G (3-10) conformation "forbidden" or filtered. T0506 98 :DALTL 1szqA 313 :TAADI T0506 104 :RLT 1szqA 319 :KVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32396 # 1p7tA.98.251 read from T0506.t04.many.frag # found chain 1p7tA in template set Warning: unaligning (T0506)T101 (1p7tA)H255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1p7tA)D258 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DAL 1p7tA 252 :DPA T0506 102 :LP 1p7tA 256 :IN T0506 105 :LT 1p7tA 259 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=32399 # 1kmtA.98.104 read from T0506.t04.many.frag # found chain 1kmtA in training set Warning: unaligning (T0506)P103 (1kmtA)G173 because S (epsilon) conformation "forbidden" or filtered. T0506 98 :DALTL 1kmtA 168 :GMLAR T0506 104 :RLT 1kmtA 174 :SYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32401 1a34A expands to /projects/compbio/data/pdb/1a34.pdb.gz 1a34A:Skipped atom 200, because occupancy 0.400 <= existing 0.600 in 1a34A Skipped atom 202, because occupancy 0.400 <= existing 0.600 in 1a34A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 1a34A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 1a34A Skipped atom 1009, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1011, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1013, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1015, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1017, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1019, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1021, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1463, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1465, because occupancy 0.450 <= existing 0.550 in 1a34A Skipped atom 1657, because occupancy 0.400 <= existing 0.600 in 1a34A Skipped atom 1659, because occupancy 0.400 <= existing 0.600 in 1a34A Skipped atom 1661, because occupancy 0.400 <= existing 0.600 in 1a34A Skipped atom 2264, because occupancy 0.250 <= existing 0.750 in 1a34A Skipped atom 2266, because occupancy 0.250 <= existing 0.750 in 1a34A # 1a34A.98.86 read from T0506.t04.many.frag # adding 1a34A to template set # found chain 1a34A in template set Warning: unaligning (T0506)D98 (1a34A)P87 because P (beta_P) conformation "forbidden" or filtered. T0506 99 :ALTLPRLT 1a34A 88 :VNEYSFVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32402 # 1l5aA.98.201 read from T0506.t04.many.frag # found chain 1l5aA in template set Warning: unaligning (T0506)P103 (1l5aA)H207 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)T106 (1l5aA)S210 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTL 1l5aA 202 :DPQLS T0506 104 :RL 1l5aA 208 :AV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32404 # 2btoA.98.309 read from T0506.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)P103 (2btoA)R315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)T106 (2btoA)S318 because Y (epsilon') conformation "forbidden" or filtered. T0506 98 :DALTL 2btoA 310 :SPMEG T0506 104 :RL 2btoA 316 :FL Number of specific fragments extracted= 2 number of extra gaps= 2 total=32406 # 1efyA.98.249 read from T0506.t04.many.frag # found chain 1efyA in template set Warning: unaligning (T0506)D98 (1efyA)S911 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTLPRLT 1efyA 912 :QADPIGLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=32407 # 1xqbA.98.49 read from T0506.t04.many.frag # found chain 1xqbA in template set T0506 98 :DALTLPRLT 1xqbA 50 :GLEQFSHLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=32408 # 1vl7A.99.92 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)T101 (1vl7A)A83 because D (zeta) conformation "forbidden" or filtered. T0506 99 :AL 1vl7A 81 :IF T0506 102 :LPRLTL 1vl7A 84 :RRRLSF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32410 # 2f1lA.99.47 read from T0506.t04.many.frag # found chain 2f1lA in template set T0506 99 :ALTLPRLTL 2f1lA 36 :LLDYRRWTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32411 # 1szwA.99.144 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTLP 1szwA 123 :LGALK T0506 105 :LTL 1szwA 129 :NAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32413 # 1qlmA.99.199 read from T0506.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)L107 (1qlmA)G208 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTLPRLT 1qlmA 200 :VTRVKYAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=32414 # 1acc.99.56 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)P103 (1acc)Q61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1acc)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1acc)A63 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1acc 57 :NQYF T0506 106 :TL 1acc 64 :IW Number of specific fragments extracted= 2 number of extra gaps= 1 total=32416 # 1g4mA.99.135 read from T0506.t04.many.frag # found chain 1g4mA in template set Warning: unaligning (T0506)P103 (1g4mA)C140 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1g4mA 136 :TGKA T0506 104 :RLTL 1g4mA 141 :GVDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32418 # 1t61A.99.215 read from T0506.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0506)L105 (1t61A)C222 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTLPR 1t61A 216 :RTHVSR T0506 106 :TL 1t61A 223 :QV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32420 # 1o26A.99.67 read from T0506.t04.many.frag # found chain 1o26A in training set T0506 99 :ALTLPRLTL 1o26A 56 :PFEHIVFTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32421 # 1jidA.99.75 read from T0506.t04.many.frag # found chain 1jidA in training set Warning: unaligning (T0506)P103 (1jidA)G80 because S (epsilon) conformation "forbidden" or filtered. T0506 99 :ALTL 1jidA 76 :VQYR T0506 104 :RLTL 1jidA 81 :RVRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32423 # 1v0aA.99.64 read from T0506.t04.many.frag # found chain 1v0aA in template set Warning: unaligning (T0506)P103 (1v0aA)L69 because G (3-10) conformation "forbidden" or filtered. T0506 99 :ALTL 1v0aA 65 :WSKW T0506 104 :RLTL 1v0aA 70 :KISF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32425 # 1qexA.99.193 read from T0506.t04.many.frag # found chain 1qexA in template set T0506 99 :ALTLPRLTL 1qexA 194 :RTEYNMAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32426 # 1xdfA.99.90 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTLP 1xdfA 91 :PDTIE T0506 105 :LTL 1xdfA 97 :ISF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32428 # 1ayoA.99.17 read from T0506.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALT 1ayoA 20 :PKA T0506 106 :TL 1ayoA 27 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32430 # 1of5A.99.123 read from T0506.t04.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)T101 (1of5A)N393 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1of5A)G394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :AL 1of5A 391 :QI T0506 104 :RLTL 1of5A 396 :VITL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32432 # 1o6sB.99.71 read from T0506.t04.many.frag # found chain 1o6sB in training set Warning: unaligning (T0506)P103 (1o6sB)A72 because G (3-10) conformation "forbidden" or filtered. T0506 99 :ALTL 1o6sB 68 :RERI T0506 104 :RLTL 1o6sB 73 :TYTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32434 # 2bgcA.99.79 read from T0506.t04.many.frag # found chain 2bgcA in template set Warning: unaligning (T0506)P103 (2bgcA)Y83 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 2bgcA 79 :SVGY T0506 104 :RLTL 2bgcA 84 :NLEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32436 # 1pmhX.99.78 read from T0506.t04.many.frag # found chain 1pmhX in training set Warning: unaligning (T0506)P103 (1pmhX)K83 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1pmhX)S84 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1pmhX 79 :FTGY T0506 105 :LTL 1pmhX 85 :VEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32438 # 1kyfA.99.103 read from T0506.t04.many.frag # found chain 1kyfA in training set T0506 99 :ALTLPRLTL 1kyfA 795 :FTEAPVLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32439 # 1efyA.99.250 read from T0506.t04.many.frag # found chain 1efyA in template set T0506 99 :ALTLPRLTL 1efyA 912 :QADPIGLIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32440 # 1lqtA.99.280 read from T0506.t04.many.frag # found chain 1lqtA in training set Warning: unaligning (T0506)P103 (1lqtA)E285 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1lqtA)R286 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1lqtA 281 :KRKV T0506 105 :LTL 1lqtA 287 :IVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32442 # 1z8kA.99.97 read from T0506.t04.many.frag # found chain 1z8kA in template set Warning: unaligning (T0506)A99 (1z8kA)F98 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1z8kA)G102 because S (epsilon) conformation "forbidden" or filtered. T0506 100 :LTL 1z8kA 99 :GDY T0506 104 :RLTL 1z8kA 103 :HLSV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32444 # 1i40A.99.80 read from T0506.t04.many.frag # found chain 1i40A in training set Warning: unaligning (T0506)P103 (1i40A)T85 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1i40A)R86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1i40A)C87 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :ALTL 1i40A 81 :PGSV T0506 106 :TL 1i40A 88 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=32446 # 1p7tA.99.252 read from T0506.t04.many.frag # found chain 1p7tA in template set Warning: unaligning (T0506)T101 (1p7tA)H255 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1p7tA)D258 because Y (epsilon') conformation "forbidden" or filtered. T0506 99 :AL 1p7tA 253 :PA T0506 102 :LP 1p7tA 256 :IN T0506 105 :LTL 1p7tA 259 :VIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32449 # 1x6oA.99.110 read from T0506.t04.many.frag # found chain 1x6oA in training set T0506 99 :ALTLPRLTL 1x6oA 103 :PSLPAHLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32450 1eerB expands to /projects/compbio/data/pdb/1eer.pdb.gz 1eerB:# 1eerB.99.186 read from T0506.t04.many.frag # adding 1eerB to template set # found chain 1eerB in template set Warning: unaligning (T0506)L102 (1eerB)R189 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1eerB)T190 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALT 1eerB 186 :LRG T0506 104 :RLTL 1eerB 191 :RYTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32452 # 2bjiA.99.243 read from T0506.t04.many.frag # found chain 2bjiA in training set Warning: unaligning (T0506)A99 (2bjiA)D1244 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (2bjiA)R1248 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bjiA)I1251 Warning: unaligning (T0506)T106 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bjiA)I1251 T0506 100 :LTL 2bjiA 1245 :LMS T0506 104 :R 2bjiA 1249 :R T0506 107 :L 2bjiA 1252 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=32455 # 1pguA.99.124 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)L102 (1pguA)G128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1pguA)R129 because G (3-10) conformation "forbidden" or filtered. T0506 99 :ALT 1pguA 125 :DFE T0506 104 :RLTL 1pguA 130 :RLCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32457 # 1xdnA.99.100 read from T0506.t04.many.frag # found chain 1xdnA in training set T0506 99 :ALTLPRLTL 1xdnA 148 :LSRVGRLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32458 # 1n9eA.99.259 read from T0506.t04.many.frag # found chain 1n9eA in training set Warning: unaligning (T0506)P103 (1n9eA)K264 because E (beta_S) conformation "forbidden" or filtered. T0506 99 :ALTL 1n9eA 260 :VSQW T0506 104 :RLTL 1n9eA 265 :MLEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32460 # 2a74A.99.77 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a74A)R80 Warning: unaligning (T0506)L102 (2a74A)N81 because S (epsilon) conformation "forbidden" or filtered. T0506 103 :PRLTL 2a74A 82 :KFVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32461 # 1vl7A.100.93 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 100 :LTLPRLTLV 1vl7A 82 :FARRRLSFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32462 # 1szwA.100.145 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)L100 (1szwA)G124 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLP 1szwA 125 :ALK T0506 105 :LTLV 1szwA 129 :NAFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=32464 # 1acc.100.57 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)P103 (1acc)Q61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1acc)S62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1acc)A63 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTL 1acc 58 :QYF T0506 106 :TLV 1acc 64 :IWS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32466 # 1xdfA.100.91 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTLP 1xdfA 92 :DTIE T0506 105 :LTLV 1xdfA 97 :ISFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32468 # 1xdnA.100.101 read from T0506.t04.many.frag # found chain 1xdnA in training set T0506 100 :LTLPRLTLV 1xdnA 149 :SRVGRLVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32469 # 2a74A.100.78 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a74A)R80 T0506 102 :LPRLTLV 2a74A 81 :NKFVTVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=32470 # 1z8kA.100.98 read from T0506.t04.many.frag # found chain 1z8kA in template set Warning: unaligning (T0506)L100 (1z8kA)G99 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1z8kA)H103 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLP 1z8kA 100 :DYG T0506 105 :LTLV 1z8kA 104 :LSVQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=32472 # 1qlmA.100.200 read from T0506.t04.many.frag # found chain 1qlmA in template set T0506 100 :LTLPRLTLV 1qlmA 201 :TRVKYATGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32473 # 2f1lA.100.48 read from T0506.t04.many.frag # found chain 2f1lA in template set Warning: unaligning (T0506)R104 (2f1lA)R41 because D (zeta) conformation "forbidden" or filtered. T0506 100 :LTLP 2f1lA 37 :LDYR T0506 105 :LTLV 2f1lA 42 :WTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32475 # 1ayoA.100.18 read from T0506.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LT 1ayoA 21 :KA T0506 106 :TLV 1ayoA 27 :QIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32477 # 1qexA.100.194 read from T0506.t04.many.frag # found chain 1qexA in template set T0506 100 :LTLPRLTLV 1qexA 195 :TEYNMAKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32478 # 1o6sB.100.72 read from T0506.t04.many.frag # found chain 1o6sB in training set Warning: unaligning (T0506)P103 (1o6sB)A72 because G (3-10) conformation "forbidden" or filtered. T0506 100 :LTL 1o6sB 69 :ERI T0506 104 :RLTLV 1o6sB 73 :TYTLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32480 # 1efyA.100.251 read from T0506.t04.many.frag # found chain 1efyA in template set T0506 100 :LTLPRLTLV 1efyA 913 :ADPIGLILL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32481 # 1i2aA.100.20 read from T0506.t04.many.frag # found chain 1i2aA in template set T0506 100 :LTLPRLTLV 1i2aA 21 :NFTQSFEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32482 # 1eerB.100.187 read from T0506.t04.many.frag # found chain 1eerB in template set Warning: unaligning (T0506)P103 (1eerB)T190 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1eerB 187 :RGR T0506 104 :RLTLV 1eerB 191 :RYTFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32484 # 1kwiA.100.70 read from T0506.t04.many.frag # found chain 1kwiA in template set Warning: unaligning (T0506)T101 (1kwiA)N101 because L (left) conformation "forbidden" or filtered. T0506 100 :L 1kwiA 100 :E T0506 102 :LPRLTLV 1kwiA 102 :GRVKQCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32486 # 1f86A.100.90 read from T0506.t04.many.frag # found chain 1f86A in training set Warning: unaligning (T0506)T101 (1f86A)G101 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1f86A)R103 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :L 1f86A 100 :S T0506 102 :L 1f86A 102 :P T0506 104 :RLTLV 1f86A 104 :RYTIA Number of specific fragments extracted= 3 number of extra gaps= 2 total=32489 # 1dmhA.100.128 read from T0506.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0506)P103 (1dmhA)H132 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 1dmhA 129 :PNG T0506 104 :RLTLV 1dmhA 133 :TLILH Number of specific fragments extracted= 2 number of extra gaps= 1 total=32491 # 1ukkA.100.70 read from T0506.t04.many.frag # found chain 1ukkA in training set T0506 100 :LTLPRLTLV 1ukkA 71 :FPPKRVSTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32492 # 1se8A.100.193 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)L102 (1se8A)G196 because T (delta_L) conformation "forbidden" or filtered. T0506 100 :LT 1se8A 194 :RK T0506 103 :PRLTLV 1se8A 197 :DPVMIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=32494 # 1quqA.100.26 read from T0506.t04.many.frag # found chain 1quqA in template set T0506 100 :LTLPRLTLV 1quqA 69 :VEISQVTIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32495 # 1of5A.100.124 read from T0506.t04.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)T101 (1of5A)N393 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1of5A)G394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :L 1of5A 392 :I T0506 104 :RLTLV 1of5A 396 :VITLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=32497 # 1pguA.100.125 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)P103 (1pguA)R129 because G (3-10) conformation "forbidden" or filtered. T0506 100 :LTL 1pguA 126 :FEG T0506 104 :RLTLV 1pguA 130 :RLCVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32499 # 1pq7A.100.112 read from T0506.t04.many.frag # found chain 1pq7A in training set Warning: unaligning (T0506)L102 (1pq7A)G130 because T (delta_L) conformation "forbidden" or filtered. T0506 100 :LT 1pq7A 128 :VA T0506 103 :PRLTLV 1pq7A 131 :SSATVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32501 # 3sil.100.303 read from T0506.t04.many.frag # found chain 3sil in training set Warning: unaligning (T0506)L102 (3sil)R309 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (3sil)D311 because L (left) conformation "forbidden" or filtered. T0506 100 :LT 3sil 307 :YT T0506 103 :P 3sil 310 :S T0506 105 :LTLV 3sil 312 :ISLY Number of specific fragments extracted= 3 number of extra gaps= 2 total=32504 1ttwA expands to /projects/compbio/data/pdb/1ttw.pdb.gz 1ttwA:# 1ttwA.100.42 read from T0506.t04.many.frag # adding 1ttwA to template set # found chain 1ttwA in template set Warning: unaligning (T0506)L100 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)N44 Warning: unaligning (T0506)T101 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)N44 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE in next template residue (1ttwA)E47 Warning: unaligning (T0506)R104 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)E47 T0506 102 :L 1ttwA 45 :E T0506 105 :LTLV 1ttwA 48 :LVAF Number of specific fragments extracted= 2 number of extra gaps= 2 total=32506 # 1t61A.100.216 read from T0506.t04.many.frag # found chain 1t61A in training set Warning: unaligning (T0506)L105 (1t61A)C222 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTLPR 1t61A 217 :THVSR T0506 106 :TLV 1t61A 223 :QVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=32508 # 1qs1A.100.250 read from T0506.t04.many.frag # found chain 1qs1A in training set Warning: unaligning (T0506)T101 (1qs1A)G252 because T (delta_L) conformation "forbidden" or filtered. T0506 100 :L 1qs1A 251 :K T0506 102 :LPRLTLV 1qs1A 253 :VECLQIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32510 # 2bpa2.100.67 read from T0506.t04.many.frag # found chain 2bpa2 in template set Warning: unaligning (T0506)P103 (2bpa2)Q71 because E (beta_S) conformation "forbidden" or filtered. T0506 100 :LTL 2bpa2 68 :AAN T0506 104 :RLTLV 2bpa2 72 :VVSVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32512 # 1f46A.100.72 read from T0506.t04.many.frag # found chain 1f46A in training set Warning: unaligning (T0506)R104 (1f46A)G81 because Y (epsilon') conformation "forbidden" or filtered. T0506 100 :LTLP 1f46A 77 :FTTP T0506 105 :LTLV 1f46A 82 :VTIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32514 # 1vl7A.101.94 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 101 :TLPRLTLVG 1vl7A 83 :ARRRLSFDC Number of specific fragments extracted= 1 number of extra gaps= 0 total=32515 # 1szwA.101.146 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1szwA)L133 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TLP 1szwA 125 :ALK T0506 105 :LTLV 1szwA 129 :NAFT Number of specific fragments extracted= 2 number of extra gaps= 2 total=32517 # 1acc.101.58 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)P103 (1acc)Q61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1acc)A63 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TL 1acc 59 :YF T0506 104 :R 1acc 62 :S T0506 106 :TLVG 1acc 64 :IWSG Number of specific fragments extracted= 3 number of extra gaps= 2 total=32520 # 1xdfA.101.92 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)T101 (1xdfA)T93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LP 1xdfA 94 :IE T0506 105 :LTLVG 1xdfA 97 :ISFET Number of specific fragments extracted= 2 number of extra gaps= 2 total=32522 # 1qs1A.101.251 read from T0506.t04.many.frag # found chain 1qs1A in training set Warning: unaligning (T0506)T101 (1qs1A)G252 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1qs1A)G260 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LPRLTLV 1qs1A 253 :VECLQIE Number of specific fragments extracted= 1 number of extra gaps= 2 total=32523 # 2a74A.101.79 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a74A)R80 Warning: unaligning (T0506)L102 (2a74A)N81 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (2a74A)A88 because E (beta_S) conformation "forbidden" or filtered. T0506 103 :PRLTLV 2a74A 82 :KFVTVQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=32524 # 1se8A.101.194 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)L102 (1se8A)G196 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1se8A)G203 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :T 1se8A 195 :K T0506 103 :PRLTLV 1se8A 197 :DPVMIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=32526 # 1efyA.101.252 read from T0506.t04.many.frag # found chain 1efyA in template set T0506 101 :TLPRLTLVG 1efyA 914 :DPIGLILLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32527 # 1ayoA.101.19 read from T0506.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :T 1ayoA 22 :A T0506 106 :TLVG 1ayoA 27 :QISL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32529 # 1i2aA.101.21 read from T0506.t04.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)G109 (1i2aA)A30 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TLPRLTLV 1i2aA 22 :FTQSFEFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=32530 # 1o6sB.101.73 read from T0506.t04.many.frag # found chain 1o6sB in training set Warning: unaligning (T0506)P103 (1o6sB)A72 because G (3-10) conformation "forbidden" or filtered. T0506 101 :TL 1o6sB 70 :RI T0506 104 :RLTLVG 1o6sB 73 :TYTLFS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32532 # 1qlmA.101.201 read from T0506.t04.many.frag # found chain 1qlmA in template set Warning: unaligning (T0506)L107 (1qlmA)G208 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLPRLT 1qlmA 202 :RVKYAT T0506 108 :VG 1qlmA 209 :TA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32534 # 1wj9A.101.169 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)T101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wj9A)Q170 T0506 102 :LPRLTLVG 1wj9A 171 :VQAVLFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32535 # 1kwiA.101.71 read from T0506.t04.many.frag # found chain 1kwiA in template set T0506 101 :TLPRLTLVG 1kwiA 101 :NGRVKQCVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32536 # 1xdnA.101.102 read from T0506.t04.many.frag # found chain 1xdnA in training set T0506 101 :TLPRLTLVG 1xdnA 150 :RVGRLVLNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32537 # 1f86A.101.91 read from T0506.t04.many.frag # found chain 1f86A in training set Warning: unaligning (T0506)P103 (1f86A)R103 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 1f86A 101 :GP T0506 104 :RLTLVG 1f86A 104 :RYTIAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32539 # 1eerB.101.188 read from T0506.t04.many.frag # found chain 1eerB in template set Warning: unaligning (T0506)P103 (1eerB)T190 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 1eerB 188 :GR T0506 104 :RLTLVG 1eerB 191 :RYTFAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=32541 # 1f46A.101.73 read from T0506.t04.many.frag # found chain 1f46A in training set Warning: unaligning (T0506)R104 (1f46A)G81 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :TLP 1f46A 78 :TTP T0506 105 :LTLVG 1f46A 82 :VTIFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=32543 # 1dmhA.101.129 read from T0506.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0506)P103 (1dmhA)H132 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 1dmhA 130 :NG T0506 104 :RLTLVG 1dmhA 133 :TLILHG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32545 # 1z8kA.101.99 read from T0506.t04.many.frag # found chain 1z8kA in template set T0506 101 :TLPRLTLVG 1z8kA 100 :DYGHLSVQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32546 # 1quqA.101.27 read from T0506.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)R104 (1quqA)Q73 because P (beta_P) conformation "forbidden" or filtered. T0506 101 :TLP 1quqA 70 :EIS T0506 105 :LTLVG 1quqA 74 :VTIVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32548 # 1flmA.101.78 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)L102 (1flmA)G80 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1flmA)T81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1flmA)G82 because Y (epsilon') conformation "forbidden" or filtered. T0506 101 :T 1flmA 79 :P T0506 105 :LTLVG 1flmA 83 :FLIRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32550 # 2b3nA.101.117 read from T0506.t04.many.frag # found chain 2b3nA in template set T0506 101 :TLPRLTLVG 2b3nA 118 :IGDVVRVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32551 # 1of5A.101.125 read from T0506.t04.many.frag # found chain 1of5A in template set Warning: unaligning (T0506)T101 (1of5A)N393 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L102 (1of5A)G394 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1of5A)F395 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVG 1of5A 396 :VITLHG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32552 # 1qexA.101.195 read from T0506.t04.many.frag # found chain 1qexA in template set T0506 101 :TLPRLTLVG 1qexA 196 :EYNMAKLLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32553 # 1vpbA.101.185 read from T0506.t04.many.frag # found chain 1vpbA in training set Warning: unaligning (T0506)P103 (1vpbA)T176 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TL 1vpbA 174 :KS T0506 104 :RLTLVG 1vpbA 177 :WYSLSA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32555 # 1ukkA.101.71 read from T0506.t04.many.frag # found chain 1ukkA in training set T0506 101 :TLPRLTLVG 1ukkA 72 :PPKRVSTEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32556 # 1vpsA.101.201 read from T0506.t04.many.frag # found chain 1vpsA in template set T0506 101 :TLPRLTLVG 1vpsA 233 :KNENTRYFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32557 # 1yqyA.101.281 read from T0506.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0506)G109 (1yqyA)A547 because E (beta_S) conformation "forbidden" or filtered. T0506 101 :TLPRLTLV 1yqyA 539 :EKEYIRID Number of specific fragments extracted= 1 number of extra gaps= 1 total=32558 # 1vlaA.101.96 read from T0506.t04.many.frag # found chain 1vlaA in training set T0506 101 :TLPRLTLVG 1vlaA 85 :IFTKVHLKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32559 # 1qs1A.102.252 read from T0506.t04.many.frag # found chain 1qs1A in training set T0506 102 :LPRLTLVGR 1qs1A 253 :VECLQIEGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32560 # 1se8A.102.195 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)L102 (1se8A)G196 because T (delta_L) conformation "forbidden" or filtered. T0506 103 :PRLTLVGR 1se8A 197 :DPVMIMGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32561 # 1vl7A.102.95 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G109 (1vl7A)C91 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :LPRLTLV 1vl7A 84 :RRRLSFD T0506 110 :R 1vl7A 92 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=32563 # 1xdfA.102.93 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1xdfA)T101 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :LP 1xdfA 94 :IE T0506 105 :LTLV 1xdfA 97 :ISFE T0506 110 :R 1xdfA 102 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=32566 # 1i2aA.102.22 read from T0506.t04.many.frag # found chain 1i2aA in template set T0506 102 :LPRLTLVGR 1i2aA 23 :TQSFEFIAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32567 # 1szwA.102.147 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1szwA)L133 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :LP 1szwA 126 :LK T0506 105 :LTLV 1szwA 129 :NAFT T0506 110 :R 1szwA 134 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=32570 # 2b3nA.102.118 read from T0506.t04.many.frag # found chain 2b3nA in template set Warning: unaligning (T0506)G109 (2b3nA)G126 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :LPRLTLV 2b3nA 119 :GDVVRVE T0506 110 :R 2b3nA 127 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32572 # 2asfA.102.78 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)R104 (2asfA)W81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (2asfA)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LP 2asfA 79 :AR T0506 105 :LTLV 2asfA 82 :LSLE T0506 110 :R 2asfA 87 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=32575 # 1wj9A.102.170 read from T0506.t04.many.frag # found chain 1wj9A in template set T0506 102 :LPRLTLVGR 1wj9A 171 :VQAVLFEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32576 # 2a74A.102.80 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)G109 (2a74A)A88 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :LPRLTLV 2a74A 81 :NKFVTVQ T0506 110 :R 2a74A 89 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=32578 # 1ayoA.102.20 read from T0506.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)L102 because of BadResidue code BAD_PEPTIDE in next template residue (1ayoA)T24 Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1ayoA)L30 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1ayoA 27 :QIS T0506 110 :R 1ayoA 31 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=32580 # 1quqA.102.80 read from T0506.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)L102 (1quqA)E123 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1quqA)T124 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1quqA 125 :YVKVAGH Number of specific fragments extracted= 1 number of extra gaps= 1 total=32581 # 1yqyA.102.282 read from T0506.t04.many.frag # found chain 1yqyA in template set T0506 102 :LPRLTLVGR 1yqyA 540 :KEYIRIDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32582 # 1flmA.102.79 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)P103 (1flmA)T81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1flmA)G82 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :L 1flmA 80 :G T0506 105 :LTLVGR 1flmA 83 :FLIRGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32584 # 1nbcA.102.103 read from T0506.t04.many.frag # found chain 1nbcA in training set T0506 102 :LPRLTLVGR 1nbcA 104 :GAHVQIQGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32585 # 1kwiA.102.72 read from T0506.t04.many.frag # found chain 1kwiA in template set Warning: unaligning (T0506)R110 (1kwiA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LPRLTLVG 1kwiA 102 :GRVKQCVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32586 # 1vpbA.102.186 read from T0506.t04.many.frag # found chain 1vpbA in training set Warning: unaligning (T0506)P103 (1vpbA)T176 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1vpbA 175 :S T0506 104 :RLTLVGR 1vpbA 177 :WYSLSAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32588 # 1ty9A.102.114 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)L102 (1ty9A)S115 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P103 (1ty9A)Q116 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1ty9A 117 :QIILNGQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=32589 # 1vprA.102.269 read from T0506.t04.many.frag # found chain 1vprA in training set Warning: unaligning (T0506)L102 (1vprA)G1135 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L107 (1vprA)I1140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1vprA)R1142 because E (beta_S) conformation "forbidden" or filtered. T0506 103 :PRLT 1vprA 1136 :RCFR T0506 108 :V 1vprA 1141 :E T0506 110 :R 1vprA 1143 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=32592 # 1efyA.102.253 read from T0506.t04.many.frag # found chain 1efyA in template set T0506 102 :LPRLTLVGR 1efyA 915 :PIGLILLGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32593 # 1dmhA.102.130 read from T0506.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0506)P103 (1dmhA)H132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1dmhA)T133 because P (beta_P) conformation "forbidden" or filtered. T0506 102 :L 1dmhA 131 :G T0506 105 :LTLVGR 1dmhA 134 :LILHGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32595 # 1wocA.102.67 read from T0506.t04.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)L105 (1wocA)I72 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :LPR 1wocA 69 :GSR T0506 106 :TLVGR 1wocA 73 :TVQGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32597 # 1xdnA.102.103 read from T0506.t04.many.frag # found chain 1xdnA in training set T0506 102 :LPRLTLVGR 1xdnA 151 :VGRLVLNGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32598 # 1acc.102.59 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)P103 (1acc)Q61 because G (3-10) conformation "forbidden" or filtered. T0506 102 :L 1acc 60 :F T0506 104 :RLTLVGR 1acc 62 :SAIWSGF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32600 # 1f86A.102.92 read from T0506.t04.many.frag # found chain 1f86A in training set Warning: unaligning (T0506)P103 (1f86A)R103 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1f86A 102 :P T0506 104 :RLTLVGR 1f86A 104 :RYTIAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32602 # 1o6sB.102.74 read from T0506.t04.many.frag # found chain 1o6sB in training set Warning: unaligning (T0506)P103 (1o6sB)A72 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1o6sB)S78 because P (beta_P) conformation "forbidden" or filtered. T0506 102 :L 1o6sB 71 :I T0506 104 :RLTLV 1o6sB 73 :TYTLF T0506 110 :R 1o6sB 79 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=32605 # 1quqA.102.28 read from T0506.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)L102 (1quqA)I71 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1quqA)G78 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLV 1quqA 72 :SQVTIV T0506 110 :R 1quqA 79 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=32607 # 1gy7A.102.78 read from T0506.t04.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1gy7A)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 102 :L 1gy7A 79 :D T0506 104 :RLTLV 1gy7A 81 :LVMIT T0506 110 :R 1gy7A 87 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=32610 # 1f46A.102.74 read from T0506.t04.many.frag # found chain 1f46A in training set Warning: unaligning (T0506)G109 (1f46A)M86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1f46A)Q87 because P (beta_P) conformation "forbidden" or filtered. T0506 102 :LPRLTLV 1f46A 79 :TPGVTIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=32611 # 1v0jA.102.307 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)P103 (1v0jA)K309 because E (beta_S) conformation "forbidden" or filtered. T0506 102 :L 1v0jA 308 :D T0506 104 :RLTLVGR 1v0jA 310 :TVIMREY Number of specific fragments extracted= 2 number of extra gaps= 1 total=32613 # 1qs1A.103.253 read from T0506.t04.many.frag # found chain 1qs1A in training set T0506 103 :PRLTLVGRA 1qs1A 254 :ECLQIEGTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32614 # 2asfA.103.79 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)R104 (2asfA)W81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (2asfA)G86 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :P 2asfA 80 :R T0506 105 :LTLV 2asfA 82 :LSLE T0506 110 :RA 2asfA 87 :RA Number of specific fragments extracted= 3 number of extra gaps= 2 total=32617 # 1se8A.103.196 read from T0506.t04.many.frag # found chain 1se8A in training set T0506 103 :PRLTLVGRA 1se8A 197 :DPVMIMGRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32618 # 2b3nA.103.119 read from T0506.t04.many.frag # found chain 2b3nA in template set T0506 103 :PRLTLVGRA 2b3nA 120 :DVVRVEGVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32619 # 1wj9A.103.171 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLVGR 1wj9A 172 :QAVLFEGR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32620 # 1ty9A.103.115 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P103 (1ty9A)Q116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1ty9A)A124 because P (beta_P) conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1ty9A 117 :QIILNGQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=32621 # 1vl7A.103.96 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 103 :PRLTLVGRA 1vl7A 85 :RRLSFDCTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32622 # 1quqA.103.81 read from T0506.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)P103 (1quqA)T124 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1quqA 125 :YVKVAGHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32623 # 1xdfA.103.94 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R104 (1xdfA)K96 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :P 1xdfA 95 :E T0506 105 :LTLVGRA 1xdfA 97 :ISFETKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32625 # 1i2aA.103.23 read from T0506.t04.many.frag # found chain 1i2aA in template set T0506 103 :PRLTLVGRA 1i2aA 24 :QSFEFIATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32626 # 1nbcA.103.104 read from T0506.t04.many.frag # found chain 1nbcA in training set T0506 103 :PRLTLVGRA 1nbcA 105 :AHVQIQGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32627 # 1flmA.103.80 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)P103 (1flmA)T81 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R104 (1flmA)G82 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1flmA 83 :FLIRGSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32628 # 1yqyA.103.283 read from T0506.t04.many.frag # found chain 1yqyA in template set T0506 103 :PRLTLVGRA 1yqyA 541 :EYIRIDAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32629 # 1mfmA.103.26 read from T0506.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0506)R104 (1mfmA)P28 because P (beta_P) conformation "forbidden" or filtered. T0506 103 :P 1mfmA 27 :G T0506 105 :LTLVGRA 1mfmA 29 :VKVWGSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32631 # 1dmhA.103.131 read from T0506.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0506)P103 (1dmhA)H132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V108 (1dmhA)H137 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTL 1dmhA 133 :TLIL T0506 109 :GRA 1dmhA 138 :GTI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32633 # 1wocA.103.68 read from T0506.t04.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)L105 (1wocA)I72 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PR 1wocA 70 :SR T0506 106 :TLVGRA 1wocA 73 :TVQGFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32635 # 1gy7A.103.79 read from T0506.t04.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)P103 (1gy7A)V80 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1gy7A 81 :LVMITGDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32636 # 2a74A.103.81 read from T0506.t04.many.frag # found chain 2a74A in template set Warning: unaligning (T0506)G109 (2a74A)A88 because E (beta_S) conformation "forbidden" or filtered. T0506 103 :PRLTLV 2a74A 82 :KFVTVQ T0506 110 :RA 2a74A 89 :TF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32638 # 1xhnA.103.111 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 103 :PRLTLVGRA 1xhnA 112 :VHIMLSGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32639 # 1szwA.103.148 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :P 1szwA 127 :K T0506 105 :LTLVGRA 1szwA 129 :NAFTLVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32641 # 1vprA.103.270 read from T0506.t04.many.frag # found chain 1vprA in training set T0506 103 :PRLTLVGRA 1vprA 1136 :RCFRIERRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32642 # 1bjt.103.473 read from T0506.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0506)P103 (1bjt)L882 because T (delta_L) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1bjt 883 :RYRMYGRI Number of specific fragments extracted= 1 number of extra gaps= 1 total=32643 # 1xdnA.103.104 read from T0506.t04.many.frag # found chain 1xdnA in training set T0506 103 :PRLTLVGRA 1xdnA 152 :GRLVLNGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32644 # 1vpbA.103.187 read from T0506.t04.many.frag # found chain 1vpbA in training set Warning: unaligning (T0506)P103 (1vpbA)T176 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1vpbA)A182 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1vpbA)I184 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLV 1vpbA 177 :WYSLS T0506 110 :R 1vpbA 183 :D Number of specific fragments extracted= 2 number of extra gaps= 3 total=32646 # 1ayoA.103.21 read from T0506.t04.many.frag # found chain 1ayoA in template set Warning: unaligning (T0506)P103 because of BadResidue code BAD_PEPTIDE at template residue (1ayoA)T24 Warning: unaligning (T0506)R104 (1ayoA)S25 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L105 (1ayoA)F26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1ayoA)L30 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1ayoA 27 :QIS T0506 110 :RA 1ayoA 31 :SV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32648 # 1kwiA.103.73 read from T0506.t04.many.frag # found chain 1kwiA in template set Warning: unaligning (T0506)R110 (1kwiA)T110 because Y (epsilon') conformation "forbidden" or filtered. T0506 103 :PRLTLVG 1kwiA 103 :RVKQCVG T0506 111 :A 1kwiA 111 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32650 # 1s28A.103.49 read from T0506.t04.many.frag # found chain 1s28A in template set Warning: unaligning (T0506)P103 (1s28A)K50 because L (left) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1s28A 51 :WVYFLSDI Number of specific fragments extracted= 1 number of extra gaps= 1 total=32651 # 1v0jA.103.308 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)P103 (1v0jA)K309 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1v0jA 310 :TVIMREYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32652 # 1quqA.103.29 read from T0506.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)A111 (1quqA)I80 because P (beta_P) conformation "forbidden" or filtered. T0506 103 :PRLTLVGR 1quqA 72 :SQVTIVGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=32653 # 1kjlA.103.25 read from T0506.t04.many.frag # found chain 1kjlA in template set T0506 103 :PRLTLVGRA 1kjlA 130 :MLITILGTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32654 # 2asfA.104.80 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G109 (2asfA)G86 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (2asfA)R87 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (2asfA)A89 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLV 2asfA 81 :WLSLE T0506 111 :A 2asfA 88 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=32656 # 1qs1A.104.254 read from T0506.t04.many.frag # found chain 1qs1A in training set T0506 104 :RLTLVGRAD 1qs1A 255 :CLQIEGTLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32657 # 1se8A.104.197 read from T0506.t04.many.frag # found chain 1se8A in training set T0506 104 :RLTLVGRAD 1se8A 198 :PVMIMGRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32658 # 1wj9A.104.172 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1wj9A 173 :AVLFEGR T0506 112 :D 1wj9A 181 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=32660 # 1ty9A.104.116 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 104 :RLTLVGRAD 1ty9A 117 :QIILNGQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32661 # 1vl7A.104.97 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)A111 (1vl7A)A93 because P (beta_P) conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1vl7A 86 :RLSFDCT T0506 112 :D 1vl7A 94 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=32663 # 2b3nA.104.120 read from T0506.t04.many.frag # found chain 2b3nA in template set T0506 104 :RLTLVGRAD 2b3nA 121 :VVRVEGVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32664 # 1flmA.104.81 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R104 (1flmA)G82 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1flmA)A90 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1flmA 83 :FLIRGSA Number of specific fragments extracted= 1 number of extra gaps= 2 total=32665 # 1xdfA.104.95 read from T0506.t04.many.frag # found chain 1xdfA in template set T0506 104 :RLTLVGRAD 1xdfA 96 :KISFETKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32666 # 1i2aA.104.24 read from T0506.t04.many.frag # found chain 1i2aA in template set T0506 104 :RLTLVGRAD 1i2aA 25 :SFEFIATLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32667 # 1quqA.104.82 read from T0506.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)D112 (1quqA)R133 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1quqA 125 :YVKVAGHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=32668 # 1nbcA.104.105 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)G109 (1nbcA)G111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1nbcA)F113 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1nbcA)A114 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1nbcA 106 :HVQIQ T0506 110 :R 1nbcA 112 :R Number of specific fragments extracted= 2 number of extra gaps= 2 total=32670 # 1xhnA.104.112 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 104 :RLTLVGRAD 1xhnA 113 :HIMLSGTVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32671 # 1mfmA.104.27 read from T0506.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0506)A111 (1mfmA)I35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1mfmA)K36 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLVGR 1mfmA 28 :PVKVWGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32672 # 1yqyA.104.284 read from T0506.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0506)G109 (1yqyA)A547 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1yqyA)V550 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1yqyA 542 :YIRID T0506 110 :RA 1yqyA 548 :KV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32674 # 1dmhA.104.132 read from T0506.t04.many.frag # found chain 1dmhA in training set T0506 104 :RLTLVGRAD 1dmhA 133 :TLILHGTIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32675 # 1s28A.104.50 read from T0506.t04.many.frag # found chain 1s28A in template set T0506 104 :RLTLVGRAD 1s28A 51 :WVYFLSDIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32676 # 1gy7A.104.80 read from T0506.t04.many.frag # found chain 1gy7A in training set T0506 104 :RLTLVGRAD 1gy7A 81 :LVMITGDLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=32677 # 1wocA.104.69 read from T0506.t04.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)L105 (1wocA)I72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1wocA)G76 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wocA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :R 1wocA 71 :R T0506 106 :TLV 1wocA 73 :TVQ T0506 110 :RA 1wocA 77 :FI Number of specific fragments extracted= 3 number of extra gaps= 3 total=32680 # 1bjt.104.474 read from T0506.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0506)G109 (1bjt)G888 because P (beta_P) conformation "forbidden" or filtered. T0506 104 :RLTLV 1bjt 883 :RYRMY T0506 110 :RAD 1bjt 889 :RIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32682 # 1quqA.104.30 read from T0506.t04.many.frag # found chain 1quqA in template set T0506 104 :RLTLVGRAD 1quqA 73 :QVTIVGIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32683 # 1vprA.104.271 read from T0506.t04.many.frag # found chain 1vprA in training set Warning: unaligning (T0506)G109 (1vprA)R1142 because E (beta_S) conformation "forbidden" or filtered. T0506 104 :RLTLV 1vprA 1137 :CFRIE T0506 110 :RAD 1vprA 1143 :RAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32685 # 1n08A.104.112 read from T0506.t04.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)D112 (1n08A)R121 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLVGRA 1n08A 113 :RVIVLGYI Number of specific fragments extracted= 1 number of extra gaps= 1 total=32686 # 1szwA.104.149 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R104 (1szwA)G128 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRAD 1szwA 129 :NAFTLVLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=32687 # 1vpbA.104.188 read from T0506.t04.many.frag # found chain 1vpbA in training set T0506 104 :RLTLVGRAD 1vpbA 177 :WYSLSADIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32688 # 1xdnA.104.105 read from T0506.t04.many.frag # found chain 1xdnA in training set Warning: unaligning (T0506)G109 (1xdnA)G158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1xdnA)F161 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :RLTLV 1xdnA 153 :RLVLN T0506 110 :RA 1xdnA 159 :EL Number of specific fragments extracted= 2 number of extra gaps= 2 total=32690 # 1ux6A.104.184 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)L105 (1ux6A)V988 because Y (epsilon') conformation "forbidden" or filtered. T0506 104 :R 1ux6A 987 :A T0506 106 :TLVGRAD 1ux6A 989 :DFSGTFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32692 # 1v0jA.104.309 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 T0506 104 :RLTLVGRA 1v0jA 310 :TVIMREYS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32693 # 1kjlA.104.26 read from T0506.t04.many.frag # found chain 1kjlA in template set T0506 104 :RLTLVGRAD 1kjlA 131 :LITILGTVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32694 # 1vpmA.104.84 read from T0506.t04.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)G109 (1vpmA)G78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1vpmA)V80 because P (beta_P) conformation "forbidden" or filtered. T0506 104 :RLTLV 1vpmA 73 :ALELE T0506 112 :D 1vpmA 81 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=32696 # 2asfA.105.81 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)D112 (2asfA)A89 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 2asfA 82 :LSLEGRA T0506 113 :R 2asfA 90 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32698 # 1wj9A.105.173 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1wj9A 174 :VLFE T0506 110 :R 1wj9A 179 :R T0506 112 :DR 1wj9A 181 :EV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32701 # 1qs1A.105.255 read from T0506.t04.many.frag # found chain 1qs1A in training set Warning: unaligning (T0506)G109 (1qs1A)G260 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1qs1A 256 :LQIE T0506 110 :RADR 1qs1A 261 :TLKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32703 # 1ty9A.105.117 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D112 (1ty9A)V125 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1ty9A 118 :IILNGQA T0506 113 :R 1ty9A 126 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=32705 # 1vl7A.105.98 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D112 (1vl7A)T94 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1vl7A 87 :LSFDCTA T0506 113 :R 1vl7A 95 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=32707 # 1flmA.105.82 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 105 :LTLVGRADR 1flmA 83 :FLIRGSAAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32708 # 2b3nA.105.121 read from T0506.t04.many.frag # found chain 2b3nA in template set Warning: unaligning (T0506)R113 (2b3nA)G130 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRAD 2b3nA 122 :VRVEGVVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32709 # 1se8A.105.198 read from T0506.t04.many.frag # found chain 1se8A in training set T0506 105 :LTLVGRADR 1se8A 199 :VMIMGRLVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32710 # 1i2aA.105.25 read from T0506.t04.many.frag # found chain 1i2aA in template set T0506 105 :LTLVGRADR 1i2aA 26 :FEFIATLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32711 # 1s28A.105.51 read from T0506.t04.many.frag # found chain 1s28A in template set T0506 105 :LTLVGRADR 1s28A 52 :VYFLSDIGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32712 # 1xhnA.105.113 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G109 (1xhnA)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1xhnA)K122 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLV 1xhnA 114 :IMLS T0506 110 :RAD 1xhnA 119 :TVT Number of specific fragments extracted= 2 number of extra gaps= 2 total=32714 # 1xdfA.105.96 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)R113 (1xdfA)E105 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLVGRAD 1xdfA 97 :ISFETKLV Number of specific fragments extracted= 1 number of extra gaps= 1 total=32715 # 1mfmA.105.28 read from T0506.t04.many.frag # found chain 1mfmA in training set T0506 105 :LTLVGRADR 1mfmA 29 :VKVWGSIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=32716 # 1bjt.105.475 read from T0506.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0506)G109 (1bjt)G888 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1bjt)E891 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1bjt)Q892 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLV 1bjt 884 :YRMY T0506 110 :RA 1bjt 889 :RI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32718 # 1yqyA.105.285 read from T0506.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0506)G109 (1yqyA)A547 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1yqyA)V550 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1yqyA 543 :IRID T0506 110 :RA 1yqyA 548 :KV T0506 113 :R 1yqyA 551 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=32721 # 1gy7A.105.81 read from T0506.t04.many.frag # found chain 1gy7A in training set Warning: unaligning (T0506)A111 (1gy7A)L88 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGR 1gy7A 82 :VMITGD T0506 112 :DR 1gy7A 89 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32723 # 1quqA.105.83 read from T0506.t04.many.frag # found chain 1quqA in template set Warning: unaligning (T0506)D112 (1quqA)R133 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1quqA 126 :VKVAGHL T0506 113 :R 1quqA 134 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=32725 # 1n08A.105.113 read from T0506.t04.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)V108 (1n08A)L117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G109 (1n08A)G118 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1n08A)R121 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1n08A)P122 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTL 1n08A 114 :VIV T0506 110 :RA 1n08A 119 :YI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32727 # 1vpmA.105.85 read from T0506.t04.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)G109 (1vpmA)G78 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1vpmA)V80 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vpmA)H82 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLV 1vpmA 74 :LELE T0506 112 :D 1vpmA 81 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=32729 # 1nbcA.105.106 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)D112 (1nbcA)A114 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTLVGRA 1nbcA 107 :VQIQGRF T0506 113 :R 1nbcA 115 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=32731 # 1dmhA.105.133 read from T0506.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0506)V108 (1dmhA)H137 because Y (epsilon') conformation "forbidden" or filtered. T0506 105 :LTL 1dmhA 134 :LIL T0506 109 :GRADR 1dmhA 138 :GTIFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32733 # 1q42A.105.120 read from T0506.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0506)G109 because of BadResidue code BAD_PEPTIDE in next template residue (1q42A)K106 Warning: unaligning (T0506)R110 because of BadResidue code BAD_PEPTIDE at template residue (1q42A)K106 T0506 105 :LTLV 1q42A 101 :VHFS T0506 111 :ADR 1q42A 107 :VRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=32735 # 1wocA.105.70 read from T0506.t04.many.frag # found chain 1wocA in template set Warning: unaligning (T0506)L105 (1wocA)I72 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wocA)S79 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRA 1wocA 73 :TVQGFI T0506 113 :R 1wocA 80 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=32737 1ze3C expands to /projects/compbio/data/pdb/1ze3.pdb.gz 1ze3C:Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1ze3C Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1ze3C Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1ze3C Skipped atom 1362, because occupancy 0.500 <= existing 0.500 in 1ze3C # 1ze3C.105.82 read from T0506.t04.many.frag # adding 1ze3C to template set # found chain 1ze3C in template set T0506 105 :LTLVGRADR 1ze3C 83 :FWMNVKAIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32738 # 1vpbA.105.189 read from T0506.t04.many.frag # found chain 1vpbA in training set Warning: unaligning (T0506)G109 (1vpbA)A182 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLV 1vpbA 178 :YSLS T0506 110 :RADR 1vpbA 183 :DITI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32740 # 1qmeA.105.496 read from T0506.t04.many.frag # found chain 1qmeA in template set Warning: unaligning (T0506)G109 (1qmeA)G549 because E (beta_S) conformation "forbidden" or filtered. T0506 105 :LTLV 1qmeA 545 :ALKS T0506 110 :RADR 1qmeA 550 :TAQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32742 # 2ewrA.105.101 read from T0506.t04.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)A111 (2ewrA)I96 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLVGR 2ewrA 90 :VEIMGD T0506 112 :DR 2ewrA 97 :RK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32744 # 1ttwA.105.47 read from T0506.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0506)G109 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R110 (1ttwA)R53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0506 105 :LTLV 1ttwA 48 :LVAF T0506 111 :A 1ttwA 54 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=32746 # 1ux6A.105.185 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)L105 (1ux6A)V988 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRADR 1ux6A 989 :DFSGTFFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=32747 # 1szwA.105.150 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)G109 (1szwA)L133 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1szwA)L135 because P (beta_P) conformation "forbidden" or filtered. T0506 105 :LTLV 1szwA 129 :NAFT T0506 110 :R 1szwA 134 :V T0506 112 :DR 1szwA 136 :RE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32750 # 1ty9A.106.118 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D112 (1ty9A)V125 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLVGRA 1ty9A 119 :ILNGQA T0506 113 :RI 1ty9A 126 :RL Number of specific fragments extracted= 2 number of extra gaps= 1 total=32752 # 2asfA.106.82 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)R110 (2asfA)R87 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLVG 2asfA 83 :SLEG T0506 111 :ADRI 2asfA 88 :AAVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32754 # 1wj9A.106.174 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLV 1wj9A 175 :LFE T0506 110 :R 1wj9A 179 :R T0506 112 :DRI 1wj9A 181 :EVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=32757 # 1vl7A.106.99 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 106 :TLVGRADRI 1vl7A 88 :SFDCTATLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32758 # 1flmA.106.83 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 106 :TLVGRADRI 1flmA 84 :LIRGSAAFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=32759 # 1qs1A.106.256 read from T0506.t04.many.frag # found chain 1qs1A in training set T0506 106 :TLVGRADRI 1qs1A 257 :QIEGTLKKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32760 # 1s28A.106.52 read from T0506.t04.many.frag # found chain 1s28A in template set T0506 106 :TLVGRADRI 1s28A 53 :YFLSDIGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32761 # 1xhnA.106.114 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 106 :TLVGRADRI 1xhnA 115 :MLSGTVTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=32762 # 1bjt.106.476 read from T0506.t04.many.frag # found chain 1bjt in template set T0506 106 :TLVGRADRI 1bjt 885 :RMYGRIEQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=32763 # 2b3nA.106.122 read from T0506.t04.many.frag # found chain 2b3nA in template set Warning: unaligning (T0506)R113 (2b3nA)G130 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVGRAD 2b3nA 123 :RVEGVVS T0506 114 :I 2b3nA 131 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32765 # 1i2aA.106.26 read from T0506.t04.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)R113 (1i2aA)E34 because L (left) conformation "forbidden" or filtered. T0506 106 :TLVGRAD 1i2aA 27 :EFIATLK T0506 114 :I 1i2aA 35 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=32767 # 1se8A.106.199 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)G109 (1se8A)G203 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1se8A)V206 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1se8A 200 :MIM T0506 110 :RA 1se8A 204 :RL T0506 113 :RI 1se8A 207 :NE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32770 # 1mfmA.106.29 read from T0506.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0506)A111 (1mfmA)I35 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1mfmA)G37 because T (delta_L) conformation "forbidden" or filtered. T0506 106 :TLVGR 1mfmA 30 :KVWGS T0506 112 :D 1mfmA 36 :K T0506 114 :I 1mfmA 38 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=32773 # 2ewrA.106.102 read from T0506.t04.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)R110 (2ewrA)D95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (2ewrA)R97 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLVG 2ewrA 91 :EIMG T0506 111 :A 2ewrA 96 :I T0506 113 :RI 2ewrA 98 :KR Number of specific fragments extracted= 3 number of extra gaps= 2 total=32776 # 1xdfA.106.97 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)G109 (1xdfA)T101 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1xdfA 98 :SFE T0506 110 :RADRI 1xdfA 102 :KLVEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32778 # 1a62.106.95 read from T0506.t04.many.frag # found chain 1a62 in training set T0506 106 :TLVGRADRI 1a62 96 :TISGKIRPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=32779 # 1n08A.106.114 read from T0506.t04.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)T106 (1n08A)I115 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)V108 (1n08A)L117 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1n08A)R121 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :L 1n08A 116 :V T0506 109 :GRA 1n08A 118 :GYI T0506 113 :RI 1n08A 122 :PE Number of specific fragments extracted= 3 number of extra gaps= 3 total=32782 # 1q42A.106.121 read from T0506.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0506)G109 because of BadResidue code BAD_PEPTIDE in next template residue (1q42A)K106 Warning: unaligning (T0506)R110 because of BadResidue code BAD_PEPTIDE at template residue (1q42A)K106 T0506 106 :TLV 1q42A 102 :HFS T0506 111 :ADRI 1q42A 107 :VRFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32784 # 1vpmA.106.86 read from T0506.t04.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. T0506 106 :TLVG 1vpmA 75 :ELEG T0506 111 :ADRI 1vpmA 80 :VTHT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32786 # 1quqA.106.84 read from T0506.t04.many.frag # found chain 1quqA in template set T0506 106 :TLVGRADRI 1quqA 127 :KVAGHLRSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=32787 # 1ttwA.106.48 read from T0506.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0506)R110 (1ttwA)R53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 T0506 106 :TLVG 1ttwA 49 :VAFM T0506 111 :A 1ttwA 54 :A T0506 114 :I 1ttwA 57 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=32790 # 1qmeA.106.497 read from T0506.t04.many.frag # found chain 1qmeA in template set Warning: unaligning (T0506)A111 (1qmeA)A551 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1qmeA)Q552 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLVGR 1qmeA 546 :LKSGT T0506 113 :RI 1qmeA 553 :IA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32792 # 1dmhA.106.134 read from T0506.t04.many.frag # found chain 1dmhA in training set Warning: unaligning (T0506)G109 (1dmhA)G138 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1dmhA)F141 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1dmhA)D142 because P (beta_P) conformation "forbidden" or filtered. T0506 106 :TLV 1dmhA 135 :ILH T0506 110 :RA 1dmhA 139 :TI T0506 114 :I 1dmhA 143 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=32795 # 1p30A.106.613 read from T0506.t04.many.frag # found chain 1p30A in template set T0506 106 :TLVGRADRI 1p30A 613 :CLYATFFPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=32796 # 1ze3C.106.83 read from T0506.t04.many.frag # found chain 1ze3C in template set Warning: unaligning (T0506)G109 (1ze3C)V87 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1ze3C 84 :WMN T0506 110 :RADRI 1ze3C 88 :KAIPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32798 # 2furA.106.105 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)D112 (2furA)Y111 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLVGRA 2furA 105 :LIFGRP T0506 113 :RI 2furA 112 :EI Number of specific fragments extracted= 2 number of extra gaps= 1 total=32800 # 1yqyA.106.286 read from T0506.t04.many.frag # found chain 1yqyA in template set Warning: unaligning (T0506)G109 (1yqyA)A547 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLV 1yqyA 544 :RID T0506 110 :RADRI 1yqyA 548 :KVVPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32802 # 1ux6A.106.186 read from T0506.t04.many.frag # found chain 1ux6A in template set T0506 106 :TLVGRADRI 1ux6A 989 :DFSGTFFIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=32803 # 1szwA.106.151 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R113 (1szwA)E137 because L (left) conformation "forbidden" or filtered. T0506 106 :TLVGRAD 1szwA 130 :AFTLVLR T0506 114 :I 1szwA 138 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=32805 # 1kwiA.106.76 read from T0506.t04.many.frag # found chain 1kwiA in template set Warning: unaligning (T0506)R110 (1kwiA)T110 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1kwiA)T112 because E (beta_S) conformation "forbidden" or filtered. T0506 106 :TLVG 1kwiA 106 :QCVG T0506 111 :A 1kwiA 111 :V T0506 113 :R 1kwiA 113 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=32808 # 1ty9A.107.119 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)G109 (1ty9A)G122 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1ty9A)R126 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 1ty9A 120 :LN T0506 110 :RAD 1ty9A 123 :QAV T0506 114 :IG 1ty9A 127 :LP Number of specific fragments extracted= 3 number of extra gaps= 2 total=32811 # 1vl7A.107.100 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G109 (1vl7A)C91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1vl7A)T94 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :LV 1vl7A 89 :FD T0506 110 :RA 1vl7A 92 :TA T0506 113 :RIG 1vl7A 95 :LIE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32814 # 1xhnA.107.115 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D112 (1xhnA)T121 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVGRA 1xhnA 116 :LSGTV T0506 113 :RI 1xhnA 122 :KV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32816 # 1flmA.107.84 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 107 :LVGRADRIG 1flmA 85 :IRGSAAFRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32817 # 2asfA.107.83 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 107 :LVGRADRIG 2asfA 84 :LEGRAAVNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=32818 # 1wj9A.107.175 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wj9A)E181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wj9A)D184 because D (zeta) conformation "forbidden" or filtered. T0506 107 :LVGR 1wj9A 176 :FEGR T0506 113 :RI 1wj9A 182 :VV Number of specific fragments extracted= 2 number of extra gaps= 2 total=32820 # 1s28A.107.53 read from T0506.t04.many.frag # found chain 1s28A in template set Warning: unaligning (T0506)G109 (1s28A)S56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1s28A)V60 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 1s28A 54 :FL T0506 110 :RAD 1s28A 57 :DIG T0506 114 :IG 1s28A 61 :ID Number of specific fragments extracted= 3 number of extra gaps= 2 total=32823 # 1bjt.107.477 read from T0506.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0506)G109 (1bjt)G888 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 1bjt 886 :MY T0506 110 :RADRIG 1bjt 889 :RIEQIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32825 # 1i2aA.107.27 read from T0506.t04.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)R113 (1i2aA)E34 because L (left) conformation "forbidden" or filtered. T0506 107 :LVGRAD 1i2aA 28 :FIATLK T0506 114 :IG 1i2aA 35 :ID Number of specific fragments extracted= 2 number of extra gaps= 1 total=32827 # 1qs1A.107.257 read from T0506.t04.many.frag # found chain 1qs1A in training set Warning: unaligning (T0506)G109 (1qs1A)G260 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1qs1A)L266 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 1qs1A 258 :IE T0506 110 :RADRI 1qs1A 261 :TLKKS Number of specific fragments extracted= 2 number of extra gaps= 2 total=32829 # 2b3nA.107.123 read from T0506.t04.many.frag # found chain 2b3nA in template set T0506 107 :LVGRADRIG 2b3nA 124 :VEGVVSGVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32830 # 1a62.107.96 read from T0506.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0506)G109 (1a62)G99 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LV 1a62 97 :IS T0506 110 :RADRIG 1a62 100 :KIRPPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32832 # 2ewrA.107.103 read from T0506.t04.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)R110 (2ewrA)D95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2ewrA)L100 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVG 2ewrA 92 :IMG T0506 111 :ADRI 2ewrA 96 :IRKR Number of specific fragments extracted= 2 number of extra gaps= 2 total=32834 # 1mfmA.107.30 read from T0506.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0506)A111 (1mfmA)I35 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :LVGR 1mfmA 31 :VWGS T0506 112 :DRIG 1mfmA 36 :KGLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=32836 # 1q42A.107.122 read from T0506.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0506)G109 because of BadResidue code BAD_PEPTIDE in next template residue (1q42A)K106 Warning: unaligning (T0506)R110 because of BadResidue code BAD_PEPTIDE at template residue (1q42A)K106 Warning: unaligning (T0506)G115 (1q42A)Q111 because G (3-10) conformation "forbidden" or filtered. T0506 107 :LV 1q42A 103 :FS T0506 111 :ADRI 1q42A 107 :VRFD Number of specific fragments extracted= 2 number of extra gaps= 2 total=32838 # 1ttwA.107.49 read from T0506.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0506)D112 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0506)G115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)G59 T0506 107 :LVGRA 1ttwA 50 :AFMRA T0506 114 :I 1ttwA 57 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=32840 # 1p30A.107.614 read from T0506.t04.many.frag # found chain 1p30A in template set Warning: unaligning (T0506)G115 (1p30A)A622 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVGRADRI 1p30A 614 :LYATFFPM Number of specific fragments extracted= 1 number of extra gaps= 1 total=32841 # 1xdfA.107.98 read from T0506.t04.many.frag # found chain 1xdfA in template set T0506 107 :LVGRADRIG 1xdfA 99 :FETKLVEGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32842 # 1qmeA.107.498 read from T0506.t04.many.frag # found chain 1qmeA in template set Warning: unaligning (T0506)G115 (1qmeA)D555 because N (gamma') conformation "forbidden" or filtered. T0506 107 :LVGRADRI 1qmeA 547 :KSGTAQIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32843 # 1vjhA.107.67 read from T0506.t04.many.frag # found chain 1vjhA in template set Warning: unaligning (T0506)G109 (1vjhA)I70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1vjhA)V72 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :LV 1vjhA 68 :GS T0506 110 :R 1vjhA 71 :A T0506 112 :DRIG 1vjhA 73 :TPIG Number of specific fragments extracted= 3 number of extra gaps= 2 total=32846 # 1v0jA.107.312 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)G109 (1v0jA)E315 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 Warning: unaligning (T0506)G115 (1v0jA)E321 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :LV 1v0jA 313 :MR T0506 110 :RA 1v0jA 316 :YS T0506 114 :I 1v0jA 320 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=32849 # 1qd6C.107.11 read from T0506.t04.many.frag # found chain 1qd6C in template set Warning: unaligning (T0506)G109 (1qd6C)T43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1qd6C)N49 because N (gamma') conformation "forbidden" or filtered. T0506 107 :LV 1qd6C 41 :IY T0506 110 :RADRI 1qd6C 44 :QTSDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=32851 # 2ftrA.107.10 read from T0506.t04.many.frag # found chain 2ftrA in template set Warning: unaligning (T0506)G109 (2ftrA)A12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (2ftrA)Q16 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 2ftrA 10 :LI T0506 110 :RAD 2ftrA 13 :LYE T0506 114 :IG 2ftrA 17 :PE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32854 # 1vr7A.107.19 read from T0506.t04.many.frag # found chain 1vr7A in training set Warning: unaligning (T0506)R113 (1vr7A)E14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1vr7A)D16 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LVGRAD 1vr7A 8 :LVAEFY T0506 114 :I 1vr7A 15 :C Number of specific fragments extracted= 2 number of extra gaps= 2 total=32856 # 1k3sA.107.41 read from T0506.t04.many.frag # found chain 1k3sA in template set Warning: unaligning (T0506)G109 (1k3sA)C44 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1k3sA)M47 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1k3sA)P50 because P (beta_P) conformation "forbidden" or filtered. T0506 107 :LV 1k3sA 42 :MC T0506 110 :RA 1k3sA 45 :PF T0506 113 :RI 1k3sA 48 :PL Number of specific fragments extracted= 3 number of extra gaps= 3 total=32859 # 1szwA.107.152 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R113 (1szwA)E137 because L (left) conformation "forbidden" or filtered. T0506 107 :LVGRAD 1szwA 131 :FTLVLR T0506 114 :IG 1szwA 138 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32861 1yi9A expands to /projects/compbio/data/pdb/1yi9.pdb.gz 1yi9A:# 1yi9A.107.122 read from T0506.t04.many.frag # adding 1yi9A to template set # found chain 1yi9A in template set Warning: unaligning (T0506)D112 (1yi9A)G174 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LVGRA 1yi9A 169 :LQVHY T0506 113 :RIG 1yi9A 175 :DIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32863 # 2a7bA.107.14 read from T0506.t04.many.frag # found chain 2a7bA in template set Warning: unaligning (T0506)A111 (2a7bA)F721 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (2a7bA)E722 because E (beta_S) conformation "forbidden" or filtered. T0506 107 :LVGR 2a7bA 717 :IEFT T0506 113 :RIG 2a7bA 723 :RSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=32865 # 1vpmA.107.87 read from T0506.t04.many.frag # found chain 1vpmA in training set Warning: unaligning (T0506)R110 (1vpmA)F79 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LVG 1vpmA 76 :LEG T0506 111 :ADRIG 1vpmA 80 :VTHTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32867 # 1kt6A.107.72 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)R113 (1kt6A)D79 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 (1kt6A)T80 because Y (epsilon') conformation "forbidden" or filtered. T0506 107 :LVGRAD 1kt6A 73 :MVGTFT T0506 115 :G 1kt6A 81 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=32869 # 1ty9A.108.120 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)G115 (1ty9A)P128 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRADRI 1ty9A 121 :NGQAVRL T0506 116 :P 1ty9A 129 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=32871 # 1vl7A.108.101 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)D112 (1vl7A)T94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vl7A)L95 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRA 1vl7A 90 :DCTA T0506 114 :IGP 1vl7A 96 :IER Number of specific fragments extracted= 2 number of extra gaps= 1 total=32873 # 1xhnA.108.116 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 108 :VGRADRIGP 1xhnA 117 :SGTVTKVNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32874 # 1wj9A.108.176 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1wj9A)V182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wj9A)D184 because D (zeta) conformation "forbidden" or filtered. T0506 108 :V 1wj9A 177 :E T0506 110 :R 1wj9A 179 :R T0506 112 :D 1wj9A 181 :E T0506 114 :I 1wj9A 183 :V T0506 116 :P 1wj9A 185 :P Number of specific fragments extracted= 5 number of extra gaps= 4 total=32879 # 1flmA.108.85 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)P116 (1flmA)D94 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :VGRADRIG 1flmA 86 :RGSAAFRT Number of specific fragments extracted= 1 number of extra gaps= 1 total=32880 # 1s28A.108.54 read from T0506.t04.many.frag # found chain 1s28A in template set Warning: unaligning (T0506)D112 (1s28A)G59 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1s28A)D62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. T0506 108 :VGRA 1s28A 55 :LSDI T0506 113 :RI 1s28A 60 :VI Number of specific fragments extracted= 2 number of extra gaps= 2 total=32882 # 1ttwA.108.50 read from T0506.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0506)G109 (1ttwA)M52 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0506)G115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)G59 Warning: unaligning (T0506)P116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)G59 T0506 108 :V 1ttwA 51 :F T0506 110 :RA 1ttwA 53 :RA T0506 114 :I 1ttwA 57 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=32885 # 1a62.108.97 read from T0506.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0506)G115 (1a62)K105 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGRADRI 1a62 98 :SGKIRPP T0506 116 :P 1a62 106 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=32887 # 1qd6C.108.12 read from T0506.t04.many.frag # found chain 1qd6C in template set T0506 108 :VGRADRIGP 1qd6C 42 :YTQTSDLNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=32888 # 1mfmA.108.31 read from T0506.t04.many.frag # found chain 1mfmA in training set Warning: unaligning (T0506)V108 (1mfmA)W32 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1mfmA)G37 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1mfmA)T39 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :GRAD 1mfmA 33 :GSIK T0506 114 :I 1mfmA 38 :L T0506 116 :P 1mfmA 40 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=32891 # 2asfA.108.84 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 108 :VGRADRIGP 2asfA 85 :EGRAAVNSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32892 # 1kq1A.108.32 read from T0506.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0506)R113 (1kq1A)E38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 (1kq1A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1kq1A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :VGRAD 1kq1A 33 :KGVIE T0506 116 :P 1kq1A 41 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=32894 # 1bjt.108.478 read from T0506.t04.many.frag # found chain 1bjt in template set T0506 108 :VGRADRIGP 1bjt 887 :YGRIEQIGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32895 # 1vr7A.108.20 read from T0506.t04.many.frag # found chain 1vr7A in training set Warning: unaligning (T0506)D112 (1vr7A)Y13 because E (beta_S) conformation "forbidden" or filtered. T0506 108 :VGRA 1vr7A 9 :VAEF T0506 113 :RIGP 1vr7A 14 :ECDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=32897 # 1v0jA.108.313 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 108 :VGRA 1v0jA 314 :REYS T0506 114 :IGP 1v0jA 320 :AED Number of specific fragments extracted= 2 number of extra gaps= 1 total=32899 # 1szwA.108.153 read from T0506.t04.many.frag # found chain 1szwA in template set Warning: unaligning (T0506)R113 (1szwA)E137 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1szwA)N140 because D (zeta) conformation "forbidden" or filtered. T0506 108 :VGRAD 1szwA 132 :TLVLR T0506 114 :IG 1szwA 138 :VS Number of specific fragments extracted= 2 number of extra gaps= 2 total=32901 # 2ftrA.108.11 read from T0506.t04.many.frag # found chain 2ftrA in template set Warning: unaligning (T0506)G109 (2ftrA)A12 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (2ftrA)E15 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (2ftrA)D19 because D (zeta) conformation "forbidden" or filtered. T0506 108 :V 2ftrA 11 :I T0506 110 :RA 2ftrA 13 :LY T0506 113 :RIG 2ftrA 16 :QPE Number of specific fragments extracted= 3 number of extra gaps= 3 total=32904 # 1i2aA.108.28 read from T0506.t04.many.frag # found chain 1i2aA in template set Warning: unaligning (T0506)G109 (1i2aA)A30 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1i2aA)E34 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1i2aA)M37 because G (3-10) conformation "forbidden" or filtered. T0506 108 :V 1i2aA 29 :I T0506 110 :RAD 1i2aA 31 :TLK T0506 114 :IG 1i2aA 35 :ID Number of specific fragments extracted= 3 number of extra gaps= 3 total=32907 # 1wlfA.108.102 read from T0506.t04.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)D112 (1wlfA)E109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wlfA)S112 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :VGRA 1wlfA 105 :QVEV T0506 113 :RI 1wlfA 110 :PL T0506 116 :P 1wlfA 113 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=32910 # 1qmeA.108.499 read from T0506.t04.many.frag # found chain 1qmeA in template set T0506 108 :VGRADRIGP 1qmeA 548 :SGTAQIADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32911 # 2ewrA.108.104 read from T0506.t04.many.frag # found chain 2ewrA in template set T0506 108 :VGRADRIGP 2ewrA 93 :MGDIRKRLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=32912 # 1q42A.108.123 read from T0506.t04.many.frag # found chain 1q42A in template set Warning: unaligning (T0506)G109 because of BadResidue code BAD_PEPTIDE in next template residue (1q42A)K106 Warning: unaligning (T0506)R110 because of BadResidue code BAD_PEPTIDE at template residue (1q42A)K106 T0506 108 :V 1q42A 104 :S T0506 111 :ADRIGP 1q42A 107 :VRFDQS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32914 # 1yi9A.108.123 read from T0506.t04.many.frag # found chain 1yi9A in template set Warning: unaligning (T0506)P116 (1yi9A)A178 because G (3-10) conformation "forbidden" or filtered. T0506 108 :VGRADRIG 1yi9A 170 :QVHYGDIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=32915 # 2b3nA.108.124 read from T0506.t04.many.frag # found chain 2b3nA in template set Warning: unaligning (T0506)A111 (2b3nA)V128 because P (beta_P) conformation "forbidden" or filtered. T0506 108 :VGR 2b3nA 125 :EGV T0506 112 :DRIGP 2b3nA 129 :SGVEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=32917 # 1vjhA.108.68 read from T0506.t04.many.frag # found chain 1vjhA in template set Warning: unaligning (T0506)P116 (1vjhA)V77 because D (zeta) conformation "forbidden" or filtered. T0506 108 :VGRADRIG 1vjhA 69 :SIAVTPIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=32918 # 1xdfA.108.99 read from T0506.t04.many.frag # found chain 1xdfA in template set Warning: unaligning (T0506)P116 (1xdfA)N108 because G (3-10) conformation "forbidden" or filtered. T0506 108 :VGRADRIG 1xdfA 100 :ETKLVEGA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32919 # 2furA.108.107 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G109 (2furA)G108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (2furA)Y111 because E (beta_S) conformation "forbidden" or filtered. T0506 108 :V 2furA 107 :F T0506 110 :RA 2furA 109 :RP T0506 113 :RIGP 2furA 112 :EIDD Number of specific fragments extracted= 3 number of extra gaps= 2 total=32922 # 1kt6A.108.73 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)P116 (1kt6A)D82 because E (beta_S) conformation "forbidden" or filtered. T0506 108 :VGRADRIG 1kt6A 74 :VGTFTDTE Number of specific fragments extracted= 1 number of extra gaps= 1 total=32923 # 1vprA.108.275 read from T0506.t04.many.frag # found chain 1vprA in training set Warning: unaligning (T0506)G109 (1vprA)R1142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1vprA)F1145 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :V 1vprA 1141 :E T0506 110 :RA 1vprA 1143 :RA T0506 113 :RIGP 1vprA 1146 :PVGP Number of specific fragments extracted= 3 number of extra gaps= 2 total=32926 1gpr expands to /projects/compbio/data/pdb/1gpr.pdb.gz 1gpr:Warning: there is no chain 1gpr will retry with 1gprA # 1gpr.108.19 read from T0506.t04.many.frag # adding 1gpr to template set # found chain 1gpr in template set Warning: unaligning (T0506)G109 (1gpr)G21 because Y (epsilon') conformation "forbidden" or filtered. T0506 108 :V 1gpr 20 :T T0506 110 :RADRIGP 1gpr 22 :EIHPITD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32928 # 1xhnA.109.117 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :GRADRI 1xhnA 118 :GTVTKV T0506 116 :PD 1xhnA 125 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=32930 # 1ty9A.109.121 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 109 :GRADRIGPD 1ty9A 122 :GQAVRLPNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=32931 # 1vl7A.109.102 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G109 (1vl7A)C91 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1vl7A)E99 because L (left) conformation "forbidden" or filtered. T0506 110 :RADRIGP 1vl7A 92 :TATLIER Number of specific fragments extracted= 1 number of extra gaps= 2 total=32932 # 1v0jA.109.314 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 109 :GRA 1v0jA 315 :EYS T0506 114 :IGPD 1v0jA 320 :AEDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32934 # 1wlfA.109.103 read from T0506.t04.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)R113 (1wlfA)P110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wlfA)S112 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :GRAD 1wlfA 106 :VEVE T0506 114 :I 1wlfA 111 :L T0506 116 :PD 1wlfA 113 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=32937 # 1yreA.109.21 read from T0506.t04.many.frag # found chain 1yreA in template set Warning: unaligning (T0506)A111 (1yreA)L22 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1yreA)E23 because E (beta_S) conformation "forbidden" or filtered. T0506 109 :GR 1yreA 20 :LR T0506 113 :RIGPD 1yreA 24 :PLVEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=32939 # 1wd3A.109.353 read from T0506.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)R110 (1wd3A)N372 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wd3A)D377 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :G 1wd3A 371 :V T0506 111 :ADRI 1wd3A 373 :TQVV T0506 116 :PD 1wd3A 378 :DD Number of specific fragments extracted= 3 number of extra gaps= 2 total=32942 # 1f32A.109.24 read from T0506.t04.many.frag # found chain 1f32A in training set Warning: unaligning (T0506)G109 (1f32A)L25 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1f32A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RA 1f32A 26 :PW T0506 113 :RIGPD 1f32A 29 :MLEGD Number of specific fragments extracted= 2 number of extra gaps= 2 total=32944 # 1wj9A.109.177 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)G109 (1wj9A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1wj9A)L180 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1wj9A)E181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1wj9A)V182 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wj9A)D184 because D (zeta) conformation "forbidden" or filtered. T0506 110 :R 1wj9A 179 :R T0506 114 :I 1wj9A 183 :V T0506 116 :PD 1wj9A 185 :PE Number of specific fragments extracted= 3 number of extra gaps= 3 total=32947 # 1ttwA.109.51 read from T0506.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0506)R110 (1ttwA)R53 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0506)G115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)G59 Warning: unaligning (T0506)P116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)G59 Warning: unaligning (T0506)D117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)Q60 T0506 109 :G 1ttwA 52 :M T0506 111 :A 1ttwA 54 :A T0506 114 :I 1ttwA 57 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=32950 2bsdA expands to /projects/compbio/data/pdb/2bsd.pdb.gz 2bsdA:# 2bsdA.109.191 read from T0506.t04.many.frag # adding 2bsdA to template set # found chain 2bsdA in template set Warning: unaligning (T0506)D117 (2bsdA)G200 because T (delta_L) conformation "forbidden" or filtered. T0506 109 :GRADRIGP 2bsdA 192 :GSVSNIQK Number of specific fragments extracted= 1 number of extra gaps= 1 total=32951 # 1bjt.109.479 read from T0506.t04.many.frag # found chain 1bjt in template set Warning: unaligning (T0506)D117 (1bjt)N896 because T (delta_L) conformation "forbidden" or filtered. T0506 109 :GRADRIGP 1bjt 888 :GRIEQIGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=32952 # 1vr7A.109.21 read from T0506.t04.many.frag # found chain 1vr7A in training set Warning: unaligning (T0506)R113 (1vr7A)E14 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1vr7A)D16 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :GRAD 1vr7A 10 :AEFY T0506 114 :I 1vr7A 15 :C T0506 116 :PD 1vr7A 17 :RE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32955 # 1uv7A.109.51 read from T0506.t04.many.frag # found chain 1uv7A in training set Warning: unaligning (T0506)G109 (1uv7A)V115 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1uv7A)P121 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 1uv7A 116 :WIQPL T0506 116 :PD 1uv7A 122 :FS Number of specific fragments extracted= 2 number of extra gaps= 2 total=32957 # 2f1rA.109.71 read from T0506.t04.many.frag # found chain 2f1rA in template set Warning: unaligning (T0506)D112 (2f1rA)R75 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2f1rA)S78 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2f1rA)S78 T0506 109 :GRA 2f1rA 72 :AFI T0506 113 :R 2f1rA 76 :R T0506 116 :PD 2f1rA 79 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=32960 # 1nlfA.109.209 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)G109 (1nlfA)S210 because E (beta_S) conformation "forbidden" or filtered. T0506 110 :RADRIGPD 1nlfA 211 :YLSSMTSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=32961 # 1a62.109.98 read from T0506.t04.many.frag # found chain 1a62 in training set Warning: unaligning (T0506)R113 (1a62)P103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1a62)K105 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1a62)G107 because T (delta_L) conformation "forbidden" or filtered. T0506 109 :GRAD 1a62 99 :GKIR T0506 114 :I 1a62 104 :P T0506 116 :P 1a62 106 :E Number of specific fragments extracted= 3 number of extra gaps= 3 total=32964 # 1s28A.109.55 read from T0506.t04.many.frag # found chain 1s28A in template set Warning: unaligning (T0506)G109 (1s28A)S56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1s28A)D62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1s28A)N63 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1s28A)L64 because T (delta_L) conformation "forbidden" or filtered. T0506 110 :RADRI 1s28A 57 :DIGVI Number of specific fragments extracted= 1 number of extra gaps= 2 total=32965 # 2furA.109.108 read from T0506.t04.many.frag # found chain 2furA in template set T0506 109 :GRADRIGPD 2furA 108 :GRPYEIDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=32966 # 1kq1A.109.33 read from T0506.t04.many.frag # found chain 1kq1A in training set T0506 109 :GRADRIGPD 1kq1A 34 :GVIEEYDKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=32967 # 1th7A.109.33 read from T0506.t04.many.frag # found chain 1th7A in template set Warning: unaligning (T0506)G109 (1th7A)G34 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 (1th7A)Y39 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1th7A)D40 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RADR 1th7A 35 :MLRS T0506 116 :PD 1th7A 41 :QH Number of specific fragments extracted= 2 number of extra gaps= 2 total=32969 # 1qd6C.109.13 read from T0506.t04.many.frag # found chain 1qd6C in template set Warning: unaligning (T0506)G109 (1qd6C)T43 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1qd6C)N49 because N (gamma') conformation "forbidden" or filtered. T0506 110 :RADRI 1qd6C 44 :QTSDL T0506 116 :PD 1qd6C 50 :KE Number of specific fragments extracted= 2 number of extra gaps= 2 total=32971 # 1vziA.109.87 read from T0506.t04.many.frag # found chain 1vziA in training set Warning: unaligning (T0506)G109 (1vziA)C87 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1vziA)G95 because T (delta_L) conformation "forbidden" or filtered. T0506 110 :RADRIGP 1vziA 88 :YTQFLKP Number of specific fragments extracted= 1 number of extra gaps= 2 total=32972 # 1i12A.109.7 read from T0506.t04.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)R110 (1i12A)Y8 because Y (epsilon') conformation "forbidden" or filtered. T0506 109 :G 1i12A 7 :F T0506 111 :ADRIGPD 1i12A 9 :IRRMEEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=32974 # 2ewrA.109.105 read from T0506.t04.many.frag # found chain 2ewrA in template set Warning: unaligning (T0506)R110 (2ewrA)D95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2ewrA)L100 because P (beta_P) conformation "forbidden" or filtered. T0506 109 :G 2ewrA 94 :G T0506 111 :ADRI 2ewrA 96 :IRKR T0506 116 :PD 2ewrA 101 :ED Number of specific fragments extracted= 3 number of extra gaps= 2 total=32977 1div expands to /projects/compbio/data/pdb/1div.pdb.gz 1div:Warning: there is no chain 1div will retry with 1divA # 1div.109.15 read from T0506.t04.many.frag # adding 1div to template set # found chain 1div in template set Warning: unaligning (T0506)D112 (1div)K19 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1div)G24 because T (delta_L) conformation "forbidden" or filtered. T0506 109 :GRA 1div 16 :GEI T0506 113 :RIGP 1div 20 :NVAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=32979 # 1vjhA.109.69 read from T0506.t04.many.frag # found chain 1vjhA in template set Warning: unaligning (T0506)G109 (1vjhA)I70 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1vjhA)V77 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1vjhA)G78 because L (left) conformation "forbidden" or filtered. T0506 110 :RADRIG 1vjhA 71 :AVTPIG Number of specific fragments extracted= 1 number of extra gaps= 2 total=32980 # 2aenA.109.142 read from T0506.t04.many.frag # found chain 2aenA in template set Warning: unaligning (T0506)G109 (2aenA)S202 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (2aenA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2aenA)P208 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :R 2aenA 203 :E T0506 112 :DRI 2aenA 205 :YII T0506 116 :PD 2aenA 209 :RS Number of specific fragments extracted= 3 number of extra gaps= 3 total=32983 1hkfA expands to /projects/compbio/data/pdb/1hkf.pdb.gz 1hkfA:# 1hkfA.109.85 read from T0506.t04.many.frag # adding 1hkfA to template set # found chain 1hkfA in template set Warning: unaligning (T0506)G109 (1hkfA)V76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1hkfA)D80 because L (left) conformation "forbidden" or filtered. T0506 110 :RAD 1hkfA 77 :TMT T0506 114 :IGPD 1hkfA 81 :LREE Number of specific fragments extracted= 2 number of extra gaps= 2 total=32985 # 2ftrA.109.12 read from T0506.t04.many.frag # found chain 2ftrA in template set Warning: unaligning (T0506)P116 (2ftrA)D19 because D (zeta) conformation "forbidden" or filtered. T0506 109 :GRADRIG 2ftrA 12 :ALYEQPE T0506 117 :D 2ftrA 20 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=32987 # 1xhnA.110.118 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 1xhnA 119 :TVTKV T0506 116 :PDE 1xhnA 125 :ETE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32989 # 1f32A.110.25 read from T0506.t04.many.frag # found chain 1f32A in training set Warning: unaligning (T0506)D112 (1f32A)T28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1f32A)G32 because S (epsilon) conformation "forbidden" or filtered. T0506 110 :RA 1f32A 26 :PW T0506 113 :RIG 1f32A 29 :MLE T0506 117 :DE 1f32A 33 :DD Number of specific fragments extracted= 3 number of extra gaps= 2 total=32992 # 1wd3A.110.354 read from T0506.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)G115 (1wd3A)D377 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RADRI 1wd3A 372 :NTQVV T0506 116 :PDE 1wd3A 378 :DDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=32994 # 1wlfA.110.104 read from T0506.t04.many.frag # found chain 1wlfA in template set T0506 110 :RADRIGPDE 1wlfA 107 :EVEPLSADD Number of specific fragments extracted= 1 number of extra gaps= 0 total=32995 # 1v0jA.110.315 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 110 :RA 1v0jA 316 :YS T0506 114 :IGPDE 1v0jA 320 :AEDDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=32997 # 2f1rA.110.72 read from T0506.t04.many.frag # found chain 2f1rA in template set Warning: unaligning (T0506)I114 because of BadResidue code BAD_PEPTIDE in next template residue (2f1rA)S78 Warning: unaligning (T0506)G115 because of BadResidue code BAD_PEPTIDE at template residue (2f1rA)S78 T0506 110 :RADR 2f1rA 73 :FIRR T0506 116 :PDE 2f1rA 79 :EEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=32999 # 1ty9A.110.122 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)A111 (1ty9A)A124 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1ty9A)R126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1ty9A)P128 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :R 1ty9A 123 :Q T0506 112 :D 1ty9A 125 :V T0506 114 :I 1ty9A 127 :L T0506 116 :PDE 1ty9A 129 :NAK Number of specific fragments extracted= 4 number of extra gaps= 3 total=33003 # 1yreA.110.22 read from T0506.t04.many.frag # found chain 1yreA in template set Warning: unaligning (T0506)G115 (1yreA)V26 because E (beta_S) conformation "forbidden" or filtered. T0506 110 :RADRI 1yreA 21 :RLEPL T0506 116 :PDE 1yreA 27 :EAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33005 # 1i12A.110.8 read from T0506.t04.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)R113 (1i12A)R11 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RAD 1i12A 8 :YIR T0506 114 :IGPDE 1i12A 12 :MEEGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33007 # 2aenA.110.143 read from T0506.t04.many.frag # found chain 2aenA in template set Warning: unaligning (T0506)A111 (2aenA)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2aenA)P208 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :R 2aenA 203 :E T0506 112 :DRI 2aenA 205 :YII T0506 116 :PDE 2aenA 209 :RSQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=33010 1q2lA expands to /projects/compbio/data/pdb/1q2l.pdb.gz 1q2lA:# 1q2lA.110.453 read from T0506.t04.many.frag # adding 1q2lA to template set # found chain 1q2lA in template set Warning: unaligning (T0506)G115 (1q2lA)S482 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 1q2lA 477 :QVDKI T0506 116 :PDE 1q2lA 483 :AQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33012 # 12asA.110.118 read from T0506.t04.many.frag # found chain 12asA in template set Warning: unaligning (T0506)D117 (12asA)G126 because L (left) conformation "forbidden" or filtered. T0506 110 :RADRIGP 12asA 119 :WERVMGD T0506 118 :E 12asA 127 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=33014 1jbwA expands to /projects/compbio/data/pdb/1jbw.pdb.gz 1jbwA:Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms # 1jbwA.110.85 read from T0506.t04.many.frag # adding 1jbwA to template set # found chain 1jbwA in template set Warning: unaligning (T0506)R110 (1jbwA)D86 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A111 (1jbwA)H87 because L (left) conformation "forbidden" or filtered. T0506 112 :DRIGPDE 1jbwA 88 :EPIPDAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33015 # 1k3xA.110.106 read from T0506.t04.many.frag # found chain 1k3xA in training set Warning: unaligning (T0506)A111 (1k3xA)I108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1k3xA)E109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1k3xA)R112 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :R 1k3xA 107 :D T0506 113 :RI 1k3xA 110 :ML T0506 116 :PDE 1k3xA 113 :PEQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=33018 # 1v8yA.110.64 read from T0506.t04.many.frag # found chain 1v8yA in training set Warning: unaligning (T0506)D112 (1v8yA)G67 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1v8yA)E70 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1v8yA)G72 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)E118 (1v8yA)E73 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RA 1v8yA 65 :PA T0506 113 :RI 1v8yA 68 :LI T0506 116 :P 1v8yA 71 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=33021 # 1yx1A.110.201 read from T0506.t04.many.frag # found chain 1yx1A in template set Warning: unaligning (T0506)D112 (1yx1A)V202 because E (beta_S) conformation "forbidden" or filtered. T0506 110 :RA 1yx1A 200 :VA T0506 113 :RIGPDE 1yx1A 203 :PPSAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33023 # 1ttwA.110.52 read from T0506.t04.many.frag # found chain 1ttwA in template set Warning: unaligning (T0506)D112 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)I56 Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)I56 Warning: unaligning (T0506)G115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ttwA)G59 Warning: unaligning (T0506)P116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)G59 Warning: unaligning (T0506)D117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ttwA)Q60 Warning: unaligning (T0506)E118 because of BadResidue code BAD_PEPTIDE at template residue (1ttwA)S61 T0506 110 :RA 1ttwA 53 :RA T0506 114 :I 1ttwA 57 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=33025 # 1nlfA.110.210 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R110 (1nlfA)Y211 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :ADRIGPDE 1nlfA 212 :LSSMTSAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33026 # 1uzbA.110.66 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 110 :RADRIGPDE 1uzbA 67 :TTAKAGKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33027 # 2cx1A.110.13 read from T0506.t04.many.frag # found chain 2cx1A in template set Warning: unaligning (T0506)D112 (2cx1A)R15 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2cx1A)S18 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RA 2cx1A 13 :EA T0506 113 :RI 2cx1A 16 :AL T0506 116 :PDE 2cx1A 19 :KKE Number of specific fragments extracted= 3 number of extra gaps= 2 total=33030 # 1wj9A.110.178 read from T0506.t04.many.frag # found chain 1wj9A in template set Warning: unaligning (T0506)D112 (1wj9A)E181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wj9A)D184 because D (zeta) conformation "forbidden" or filtered. T0506 110 :RA 1wj9A 179 :RL T0506 113 :RI 1wj9A 182 :VV T0506 116 :PDE 1wj9A 185 :PER Number of specific fragments extracted= 3 number of extra gaps= 2 total=33033 # 1vl7A.110.103 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G115 (1vl7A)E97 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1vl7A)E99 because L (left) conformation "forbidden" or filtered. T0506 110 :RADRI 1vl7A 92 :TATLI T0506 116 :P 1vl7A 98 :R T0506 118 :E 1vl7A 100 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=33036 # 2aalA.110.71 read from T0506.t04.many.frag # found chain 2aalA in template set T0506 110 :RADRIGPDE 2aalA 71 :ISRPRSEEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33037 # 2fa1A.110.105 read from T0506.t04.many.frag # found chain 2fa1A in template set T0506 110 :RADRIGPDE 2fa1A 187 :SARRAQAKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33038 # 2bbdA.110.154 read from T0506.t04.many.frag # found chain 2bbdA in template set Warning: unaligning (T0506)G115 (2bbdA)T161 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 2bbdA 156 :TYERV T0506 116 :PDE 2bbdA 162 :AQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33040 # 1dzfA.110.151 read from T0506.t04.many.frag # found chain 1dzfA in template set Warning: unaligning (T0506)D112 (1dzfA)I154 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1dzfA)S157 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RA 1dzfA 152 :KH T0506 113 :RI 1dzfA 155 :RL T0506 116 :PDE 1dzfA 158 :SDE Number of specific fragments extracted= 3 number of extra gaps= 2 total=33043 # 1uv7A.110.52 read from T0506.t04.many.frag # found chain 1uv7A in training set Warning: unaligning (T0506)G115 (1uv7A)P121 because P (beta_P) conformation "forbidden" or filtered. T0506 110 :RADRI 1uv7A 116 :WIQPL T0506 116 :PDE 1uv7A 122 :FSQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33045 # 2furA.110.109 read from T0506.t04.many.frag # found chain 2furA in template set T0506 110 :RADRIGPDE 2furA 109 :RPYEIDDTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33046 2b5gA expands to /projects/compbio/data/pdb/2b5g.pdb.gz 2b5gA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b5gA.110.4 read from T0506.t04.many.frag # adding 2b5gA to template set # found chain 2b5gA in template set Warning: unaligning (T0506)D112 (2b5gA)R7 because Y (epsilon') conformation "forbidden" or filtered. T0506 110 :RA 2b5gA 5 :VI T0506 113 :RIGPDE 2b5gA 8 :PATAAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33048 # 1gheA.110.4 read from T0506.t04.many.frag # found chain 1gheA in training set T0506 110 :RADRIGPDE 1gheA 5 :QLRRVTAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=33049 # 1xhnA.111.119 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)A111 (1xhnA)V120 because E (beta_S) conformation "forbidden" or filtered. T0506 112 :DRIGPDEV 1xhnA 121 :TKVNETEM Number of specific fragments extracted= 1 number of extra gaps= 1 total=33050 # 1i12A.111.9 read from T0506.t04.many.frag # found chain 1i12A in training set Warning: unaligning (T0506)D112 (1i12A)R10 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1i12A)E13 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 1i12A 9 :I T0506 113 :RI 1i12A 11 :RM T0506 116 :PDEV 1i12A 14 :EGDL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33053 # 1yreA.111.23 read from T0506.t04.many.frag # found chain 1yreA in template set Warning: unaligning (T0506)G115 (1yreA)V26 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :ADRI 1yreA 22 :LEPL T0506 116 :PDEV 1yreA 27 :EADI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33055 # 1f32A.111.26 read from T0506.t04.many.frag # found chain 1f32A in training set Warning: unaligning (T0506)D112 (1f32A)T28 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1f32A)E31 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 1f32A 27 :W T0506 113 :RI 1f32A 29 :ML T0506 116 :PDEV 1f32A 32 :GDDI Number of specific fragments extracted= 3 number of extra gaps= 2 total=33058 # 1wd3A.111.355 read from T0506.t04.many.frag # found chain 1wd3A in training set Warning: unaligning (T0506)G115 (1wd3A)D377 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :ADRI 1wd3A 373 :TQVV T0506 116 :PDEV 1wd3A 378 :DDSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=33060 # 1iicA.111.227 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)D112 (1iicA)R262 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1iicA)K263 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :A 1iicA 261 :L T0506 114 :IGPDEV 1iicA 264 :LKKEDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33062 # 1jbwA.111.86 read from T0506.t04.many.frag # found chain 1jbwA in template set Warning: unaligning (T0506)A111 (1jbwA)H87 because L (left) conformation "forbidden" or filtered. T0506 112 :DRIGPDEV 1jbwA 88 :EPIPDAAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33063 # 1sqwA.111.0 read from T0506.t04.many.frag # found chain 1sqwA in template set Warning: unaligning (T0506)A111 because first residue in template chain is (1sqwA)M1 Warning: unaligning (T0506)G115 (1sqwA)T5 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1sqwA 2 :RPL T0506 116 :PDEV 1sqwA 6 :EEET Number of specific fragments extracted= 2 number of extra gaps= 1 total=33065 # 1wlfA.111.105 read from T0506.t04.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)R113 (1wlfA)P110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1wlfA)S112 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :AD 1wlfA 108 :VE T0506 114 :I 1wlfA 111 :L T0506 116 :PDEV 1wlfA 113 :ADDW Number of specific fragments extracted= 3 number of extra gaps= 2 total=33068 # 1q2lA.111.454 read from T0506.t04.many.frag # found chain 1q2lA in template set T0506 111 :ADRIGPDEV 1q2lA 478 :VDKISAQTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33069 # 2cx1A.111.14 read from T0506.t04.many.frag # found chain 2cx1A in template set Warning: unaligning (T0506)D112 (2cx1A)R15 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2cx1A)S18 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :A 2cx1A 14 :A T0506 113 :RI 2cx1A 16 :AL T0506 116 :PDEV 2cx1A 19 :KKER Number of specific fragments extracted= 3 number of extra gaps= 2 total=33072 # 2aenA.111.144 read from T0506.t04.many.frag # found chain 2aenA in template set Warning: unaligning (T0506)A111 (2aenA)F204 because Y (epsilon') conformation "forbidden" or filtered. T0506 112 :DRIGPDEV 2aenA 205 :YIIPRSQE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33073 # 1zr6A.111.175 read from T0506.t04.many.frag # found chain 1zr6A in template set Warning: unaligning (T0506)D112 (1zr6A)V171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1zr6A)S174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V119 (1zr6A)N178 because L (left) conformation "forbidden" or filtered. T0506 111 :A 1zr6A 170 :I T0506 113 :RI 1zr6A 172 :HV T0506 116 :PDE 1zr6A 175 :ETE Number of specific fragments extracted= 3 number of extra gaps= 3 total=33076 # 2fa1A.111.106 read from T0506.t04.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)D112 (2fa1A)R189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (2fa1A)Q192 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :A 2fa1A 188 :A T0506 113 :RI 2fa1A 190 :RA T0506 116 :PDEV 2fa1A 193 :AKEC Number of specific fragments extracted= 3 number of extra gaps= 2 total=33079 # 1ty9A.111.123 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R113 (1ty9A)R126 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :AD 1ty9A 124 :AV T0506 114 :IGPDEV 1ty9A 127 :LPNAKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33081 # 1dzfA.111.152 read from T0506.t04.many.frag # found chain 1dzfA in template set Warning: unaligning (T0506)G115 (1dzfA)S157 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :ADRI 1dzfA 153 :HIRL T0506 116 :PDEV 1dzfA 158 :SDEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33083 # 1uv7A.111.53 read from T0506.t04.many.frag # found chain 1uv7A in training set Warning: unaligning (T0506)A111 (1uv7A)I117 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D112 (1uv7A)Q118 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I114 (1uv7A)L120 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1uv7A)P121 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :R 1uv7A 119 :P T0506 116 :PDEV 1uv7A 122 :FSQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=33085 # 1vh4A.111.365 read from T0506.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0506)D112 (1vh4A)G365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R113 (1vh4A)R366 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 1vh4A 364 :V T0506 114 :IGPDEV 1vh4A 367 :IDDEQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33087 # 1v0jA.111.316 read from T0506.t04.many.frag # found chain 1v0jA in template set Warning: unaligning (T0506)D112 because of BadResidue code BAD_PEPTIDE in next template residue (1v0jA)F319 Warning: unaligning (T0506)R113 because of BadResidue code BAD_PEPTIDE at template residue (1v0jA)F319 T0506 111 :A 1v0jA 317 :S T0506 114 :IGPDEV 1v0jA 320 :AEDDDE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33089 # 1nlfA.111.211 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 111 :ADRIGPDEV 1nlfA 212 :LSSMTSAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33090 # 1gheA.111.5 read from T0506.t04.many.frag # found chain 1gheA in training set Warning: unaligning (T0506)R113 (1gheA)R8 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :AD 1gheA 6 :LR T0506 114 :IGPDEV 1gheA 9 :VTAESF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33092 # 1u9tA.111.229 read from T0506.t04.many.frag # found chain 1u9tA in template set Warning: unaligning (T0506)G115 (1u9tA)S222 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (1u9tA)N223 because G (3-10) conformation "forbidden" or filtered. T0506 111 :ADRI 1u9tA 218 :ACKV T0506 117 :DEV 1u9tA 224 :SAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33094 # 1div.111.17 read from T0506.t04.many.frag # found chain 1div in template set Warning: unaligning (T0506)A111 (1div)I18 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1div)A22 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1div 19 :KNV T0506 116 :PDEV 1div 23 :DGYA Number of specific fragments extracted= 2 number of extra gaps= 2 total=33096 # 1uzbA.111.67 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 111 :ADRIGPDEV 1uzbA 68 :TAKAGKAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33097 # 2b5gA.111.5 read from T0506.t04.many.frag # found chain 2b5gA in template set Warning: unaligning (T0506)G115 (2b5gA)T10 because E (beta_S) conformation "forbidden" or filtered. T0506 111 :ADRI 2b5gA 6 :IRPA T0506 116 :PDEV 2b5gA 11 :AADC Number of specific fragments extracted= 2 number of extra gaps= 1 total=33099 # 1l6rA.111.115 read from T0506.t04.many.frag # found chain 1l6rA in training set T0506 111 :ADRIGPDEV 1l6rA 113 :GFDIDPEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33100 # 1k3xA.111.107 read from T0506.t04.many.frag # found chain 1k3xA in training set Warning: unaligning (T0506)D112 (1k3xA)E109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1k3xA)R112 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :A 1k3xA 108 :I T0506 113 :RI 1k3xA 110 :ML T0506 116 :PDEV 1k3xA 113 :PEQL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33103 # 2fckA.111.16 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)D112 (2fckA)R15 because Y (epsilon') conformation "forbidden" or filtered. T0506 111 :A 2fckA 14 :L T0506 113 :RIGPDEV 2fckA 16 :LITADEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33105 # 1yx1A.111.202 read from T0506.t04.many.frag # found chain 1yx1A in template set Warning: unaligning (T0506)G115 (1yx1A)S205 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :ADRI 1yx1A 201 :AVPP T0506 116 :PDEV 1yx1A 206 :AADL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33107 # 2aalA.111.72 read from T0506.t04.many.frag # found chain 2aalA in template set Warning: unaligning (T0506)G115 (2aalA)S76 because P (beta_P) conformation "forbidden" or filtered. T0506 111 :ADRI 2aalA 72 :SRPR T0506 116 :PDEV 2aalA 77 :EEQK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33109 # 1xhnA.112.120 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D112 (1xhnA)T121 because E (beta_S) conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 1xhnA 122 :KVNETEMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=33110 # 1yreA.112.24 read from T0506.t04.many.frag # found chain 1yreA in template set Warning: unaligning (T0506)G115 (1yreA)V26 because E (beta_S) conformation "forbidden" or filtered. T0506 112 :DRI 1yreA 23 :EPL T0506 116 :PDEVP 1yreA 27 :EADIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33112 # 1l6rA.112.116 read from T0506.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)D112 (1l6rA)F114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1l6rA)D117 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1l6rA 115 :DI T0506 116 :PDEVP 1l6rA 118 :PEDVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=33114 # 1sqwA.112.1 read from T0506.t04.many.frag # found chain 1sqwA in template set Warning: unaligning (T0506)R113 (1sqwA)P3 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :D 1sqwA 2 :R T0506 114 :IGPDEVP 1sqwA 4 :LTEEETR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33116 # 2fckA.112.17 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)D112 (2fckA)R15 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 2fckA 16 :LITADEAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33117 # 2aalA.112.73 read from T0506.t04.many.frag # found chain 2aalA in template set T0506 112 :DRIGPDEVP 2aalA 73 :RPRSEEQKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33118 # 2fa1A.112.107 read from T0506.t04.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)D112 (2fa1A)R189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (2fa1A)A193 because S (epsilon) conformation "forbidden" or filtered. T0506 113 :RIG 2fa1A 190 :RAQ T0506 117 :DEVP 2fa1A 194 :KECQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=33120 # 1i12A.112.10 read from T0506.t04.many.frag # found chain 1i12A in training set T0506 112 :DRIGPDEVP 1i12A 10 :RRMEEGDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33121 # 1vh4A.112.366 read from T0506.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0506)D112 (1vh4A)G365 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 1vh4A 366 :RIDDEQIF Number of specific fragments extracted= 1 number of extra gaps= 1 total=33122 # 1q2lA.112.455 read from T0506.t04.many.frag # found chain 1q2lA in template set Warning: unaligning (T0506)G115 (1q2lA)S482 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1q2lA 479 :DKI T0506 116 :PDEVP 1q2lA 483 :AQTFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33124 # 2fnaA.112.206 read from T0506.t04.many.frag # found chain 2fnaA in template set T0506 112 :DRIGPDEVP 2fnaA 206 :KPFSREEAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33125 # 2cx1A.112.15 read from T0506.t04.many.frag # found chain 2cx1A in template set Warning: unaligning (T0506)D112 (2cx1A)R15 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 2cx1A 16 :ALSKKERR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33126 2b4vA expands to /projects/compbio/data/pdb/2b4v.pdb.gz 2b4vA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 426, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 430, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 432, because occupancy 0.500 <= existing 0.500 in 2b4vA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 2b4vA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1204, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1208, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1210, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1212, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1214, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1252, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1256, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1258, because occupancy 0.500 <= existing 0.500 in 2b4vA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1912, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1914, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1916, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 1918, because occupancy 0.500 <= existing 0.500 in 2b4vA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2591, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 2595, because occupancy 0.500 <= existing 0.500 in 2b4vA Skipped atom 2597, because occupancy 0.500 <= existing 0.500 in 2b4vA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2b4vA.112.164 read from T0506.t04.many.frag # adding 2b4vA to template set # found chain 2b4vA in template set T0506 112 :DRIGPDEVP 2b4vA 184 :QCVGDNDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33127 # 1jbwA.112.87 read from T0506.t04.many.frag # found chain 1jbwA in template set T0506 112 :DRIGPDEVP 1jbwA 88 :EPIPDAALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33128 # 1iicA.112.228 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 112 :DRIGPDEVP 1iicA 262 :RKLKKEDID Number of specific fragments extracted= 1 number of extra gaps= 0 total=33129 # 2aenA.112.145 read from T0506.t04.many.frag # found chain 2aenA in template set Warning: unaligning (T0506)G115 (2aenA)P208 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 2aenA 205 :YII T0506 116 :PDEVP 2aenA 209 :RSQES Number of specific fragments extracted= 2 number of extra gaps= 1 total=33131 # 1wqgA.112.67 read from T0506.t04.many.frag # found chain 1wqgA in template set Warning: unaligning (T0506)D112 (1wqgA)K68 because D (zeta) conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 1wqgA 69 :PYEANQLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33132 # 1jkoC.112.3 read from T0506.t04.many.frag # found chain 1jkoC in template set Warning: unaligning (T0506)G115 (1jkoC)N145 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1jkoC 142 :RAI T0506 116 :PDEVP 1jkoC 146 :KHEQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33134 # 2b5gA.112.6 read from T0506.t04.many.frag # found chain 2b5gA in template set Warning: unaligning (T0506)D112 (2b5gA)R7 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 2b5gA 8 :PATAADCS Number of specific fragments extracted= 1 number of extra gaps= 1 total=33135 # 1jh6A.112.124 read from T0506.t04.many.frag # found chain 1jh6A in training set Warning: unaligning (T0506)D112 (1jh6A)A125 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1jh6A)T128 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1jh6A 126 :EL T0506 116 :PDEVP 1jh6A 129 :EEEKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=33137 # 1f32A.112.27 read from T0506.t04.many.frag # found chain 1f32A in training set Warning: unaligning (T0506)D112 (1f32A)T28 because Y (epsilon') conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 1f32A 29 :MLEGDDIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=33138 # 1vyrA.112.148 read from T0506.t04.many.frag # found chain 1vyrA in training set Warning: unaligning (T0506)G115 (1vyrA)E152 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1vyrA 149 :RAL T0506 116 :PDEVP 1vyrA 153 :LDEIP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33140 1o59A expands to /projects/compbio/data/pdb/1o59.pdb.gz 1o59A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1211, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1213, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1215, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1217, because occupancy 0.350 <= existing 0.650 in 1o59A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1410, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1412, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1414, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1416, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1418, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1420, because occupancy 0.500 <= existing 0.500 in 1o59A Skipped atom 1617, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1619, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1621, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1623, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1625, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1627, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1629, because occupancy 0.350 <= existing 0.650 in 1o59A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1992, because occupancy 0.350 <= existing 0.650 in 1o59A Skipped atom 1994, because occupancy 0.350 <= existing 0.650 in 1o59A # 1o59A.112.13 read from T0506.t04.many.frag # adding 1o59A to template set # found chain 1o59A in template set T0506 112 :DRIGPDEVP 1o59A 2 :KFFSLADEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33141 # 1uzbA.112.68 read from T0506.t04.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)D112 (1uzbA)A69 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RIGPDEVP 1uzbA 70 :KAGKAEAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33142 # 1ex2A.112.126 read from T0506.t04.many.frag # found chain 1ex2A in template set Warning: unaligning (T0506)R113 (1ex2A)S128 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1ex2A)S130 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :D 1ex2A 127 :W T0506 114 :I 1ex2A 129 :L T0506 116 :PDEVP 1ex2A 131 :EEEIW Number of specific fragments extracted= 3 number of extra gaps= 2 total=33145 # 1f06A.112.198 read from T0506.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0506)I114 (1f06A)A201 because Y (epsilon') conformation "forbidden" or filtered. T0506 112 :DR 1f06A 199 :VV T0506 115 :GPDEVP 1f06A 202 :DAADHE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33147 # 1yx1A.112.203 read from T0506.t04.many.frag # found chain 1yx1A in template set Warning: unaligning (T0506)R113 (1yx1A)P203 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G115 (1yx1A)S205 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :D 1yx1A 202 :V T0506 114 :I 1yx1A 204 :P T0506 116 :PDEVP 1yx1A 206 :AADLQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=33150 # 1zr6A.112.176 read from T0506.t04.many.frag # found chain 1zr6A in template set Warning: unaligning (T0506)G115 (1zr6A)S174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V119 (1zr6A)N178 because L (left) conformation "forbidden" or filtered. T0506 112 :DRI 1zr6A 171 :VHV T0506 116 :PDE 1zr6A 175 :ETE T0506 120 :P 1zr6A 179 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=33153 # 1e0tA.112.287 read from T0506.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)R289 Warning: unaligning (T0506)G115 (1e0tA)T291 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1e0tA 290 :P T0506 116 :PDEVP 1e0tA 292 :DAEAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=33155 # 1gw5S.112.20 read from T0506.t04.many.frag # found chain 1gw5S in template set Warning: unaligning (T0506)G115 (1gw5S)D24 because P (beta_P) conformation "forbidden" or filtered. T0506 112 :DRI 1gw5S 21 :MQF T0506 116 :PDEVP 1gw5S 25 :DDEKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33157 # 1l6rA.113.117 read from T0506.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)G115 (1l6rA)D117 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1l6rA 115 :DI T0506 116 :PDEVPL 1l6rA 118 :PEDVDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=33159 # 1xhnA.113.121 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 113 :RIGPDEVPL 1xhnA 122 :KVNETEMDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33160 # 1yreA.113.25 read from T0506.t04.many.frag # found chain 1yreA in template set T0506 113 :RIGPDEVPL 1yreA 24 :PLVEADIPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33161 # 1sqwA.113.2 read from T0506.t04.many.frag # found chain 1sqwA in template set Warning: unaligning (T0506)G115 (1sqwA)T5 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1sqwA 3 :PL T0506 116 :PDEVPL 1sqwA 6 :EEETRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33163 # 2fckA.113.18 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)G115 (2fckA)T18 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 2fckA 16 :LI T0506 116 :PDEVPL 2fckA 19 :ADEAEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33165 # 1f06A.113.199 read from T0506.t04.many.frag # found chain 1f06A in template set T0506 113 :RIGPDEVPL 1f06A 200 :VADAADHER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33166 # 1jkoC.113.4 read from T0506.t04.many.frag # found chain 1jkoC in template set Warning: unaligning (T0506)R113 (1jkoC)A143 because G (3-10) conformation "forbidden" or filtered. T0506 114 :IGPDEVPL 1jkoC 144 :INKHEQEQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=33167 # 1wqgA.113.68 read from T0506.t04.many.frag # found chain 1wqgA in template set Warning: unaligning (T0506)R113 (1wqgA)P69 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :IGPDEVPL 1wqgA 70 :YEANQLRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33168 # 1usyA.113.140 read from T0506.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0506)G115 (1usyA)P143 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1usyA 141 :EI T0506 116 :PDEVPL 1usyA 144 :KDLHEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=33170 1txuA expands to /projects/compbio/data/pdb/1txu.pdb.gz 1txuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1txuA.113.76 read from T0506.t04.many.frag # adding 1txuA to template set # found chain 1txuA in template set Warning: unaligning (T0506)R113 (1txuA)K198 because L (left) conformation "forbidden" or filtered. T0506 114 :IGPDEVPL 1txuA 199 :VPPERVEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=33171 # 2aalA.113.74 read from T0506.t04.many.frag # found chain 2aalA in template set Warning: unaligning (T0506)G115 (2aalA)S76 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 2aalA 74 :PR T0506 116 :PDEVPL 2aalA 77 :EEQKVC Number of specific fragments extracted= 2 number of extra gaps= 1 total=33173 # 1y0hA.113.15 read from T0506.t04.many.frag # found chain 1y0hA in training set T0506 113 :RIGPDEVPL 1y0hA 13 :MPRPDARSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33174 # 2fnaA.113.207 read from T0506.t04.many.frag # found chain 2fnaA in template set Warning: unaligning (T0506)G115 (2fnaA)S209 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 2fnaA 207 :PF T0506 116 :PDEVPL 2fnaA 210 :REEAIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33176 # 1eayC.113.11 read from T0506.t04.many.frag # found chain 1eayC in template set Warning: unaligning (T0506)D117 (1eayC)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 113 :RIGP 1eayC 166 :RLKA T0506 118 :EVPL 1eayC 171 :EVDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33178 # 1x8dA.113.8 read from T0506.t04.many.frag # found chain 1x8dA in template set Warning: unaligning (T0506)G115 (1x8dA)N11 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1x8dA 9 :QV T0506 116 :PDEVPL 1x8dA 12 :PDAHEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33180 # 1vh4A.113.367 read from T0506.t04.many.frag # found chain 1vh4A in training set Warning: unaligning (T0506)G115 (1vh4A)D368 because P (beta_P) conformation "forbidden" or filtered. T0506 113 :RI 1vh4A 366 :RI T0506 116 :PDEVPL 1vh4A 369 :DEQIFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=33182 # 1e0tA.113.288 read from T0506.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0506)R113 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1e0tA)R289 Warning: unaligning (T0506)G115 (1e0tA)T291 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1e0tA 290 :P T0506 116 :PDEVPL 1e0tA 292 :DAEAGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33184 # 1uzbA.113.69 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 113 :RIGPDEVPL 1uzbA 70 :KAGKAEAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33185 # 1iicA.113.229 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 113 :RIGPDEVPL 1iicA 263 :KLKKEDIDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33186 # 2fa1A.113.108 read from T0506.t04.many.frag # found chain 2fa1A in template set Warning: unaligning (T0506)G115 (2fa1A)Q192 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P116 (2fa1A)A193 because S (epsilon) conformation "forbidden" or filtered. T0506 113 :RI 2fa1A 190 :RA T0506 117 :DEVPL 2fa1A 194 :KECQR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33188 # 1jh6A.113.125 read from T0506.t04.many.frag # found chain 1jh6A in training set T0506 113 :RIGPDEVPL 1jh6A 126 :ELTEEEKKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33189 # 1g61A.113.165 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 113 :RIGPDEVPL 1g61A 2166 :LVEDDELEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33190 # 1vyrA.113.149 read from T0506.t04.many.frag # found chain 1vyrA in training set T0506 113 :RIGPDEVPL 1vyrA 150 :ALELDEIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33191 # 1i12A.113.11 read from T0506.t04.many.frag # found chain 1i12A in training set T0506 113 :RIGPDEVPL 1i12A 11 :RMEEGDLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33192 # 2aenA.113.146 read from T0506.t04.many.frag # found chain 2aenA in template set T0506 113 :RIGPDEVPL 2aenA 206 :IIPRSQESK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33193 # 1v4pA.113.48 read from T0506.t04.many.frag # found chain 1v4pA in training set Warning: unaligning (T0506)R113 (1v4pA)K49 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :IGPDEVPL 1v4pA 50 :PSDEEIRE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33194 1jk0B expands to /projects/compbio/data/pdb/1jk0.pdb.gz 1jk0B:# 1jk0B.113.72 read from T0506.t04.many.frag # adding 1jk0B to template set # found chain 1jk0B in template set T0506 113 :RIGPDEVPL 1jk0B 73 :KLTDDQKTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33195 # 2b4vA.113.165 read from T0506.t04.many.frag # found chain 2b4vA in template set T0506 113 :RIGPDEVPL 2b4vA 185 :CVGDNDVEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33196 # 2cveA.113.132 read from T0506.t04.many.frag # found chain 2cveA in template set T0506 113 :RIGPDEVPL 2cveA 133 :LVPFAEVGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33197 # 1vpqA.113.222 read from T0506.t04.many.frag # found chain 1vpqA in template set T0506 113 :RIGPDEVPL 1vpqA 211 :LYSEEELKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33198 # 1yreA.114.26 read from T0506.t04.many.frag # found chain 1yreA in template set Warning: unaligning (T0506)G115 (1yreA)V26 because E (beta_S) conformation "forbidden" or filtered. T0506 114 :I 1yreA 25 :L T0506 116 :PDEVPLA 1yreA 27 :EADIPEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33200 # 1l6rA.114.118 read from T0506.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)G115 (1l6rA)D117 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1l6rA 116 :I T0506 116 :PDEVPLA 1l6rA 118 :PEDVDYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33202 # 1eayC.114.12 read from T0506.t04.many.frag # found chain 1eayC in template set Warning: unaligning (T0506)G115 (1eayC)K168 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D117 (1eayC)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 114 :I 1eayC 167 :L T0506 116 :P 1eayC 169 :A T0506 118 :EVPLA 1eayC 171 :EVDLL Number of specific fragments extracted= 3 number of extra gaps= 2 total=33205 2f2bA expands to /projects/compbio/data/pdb/2f2b.pdb.gz 2f2bA:# 2f2bA.114.94 read from T0506.t04.many.frag # adding 2f2bA to template set # found chain 2f2bA in template set T0506 114 :IGPDEVPLA 2f2bA 95 :FPGREVVPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33206 # 1f06A.114.200 read from T0506.t04.many.frag # found chain 1f06A in template set Warning: unaligning (T0506)G115 (1f06A)D202 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1f06A 201 :A T0506 116 :PDEVPLA 1f06A 203 :AADHERI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33208 # 1xhnA.114.122 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G115 (1xhnA)N124 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1xhnA 123 :V T0506 116 :PDEVPLA 1xhnA 125 :ETEMDIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33210 # 2fckA.114.19 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)G115 (2fckA)T18 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 2fckA 17 :I T0506 116 :PDEVPLA 2fckA 19 :ADEAEEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33212 # 2cveA.114.133 read from T0506.t04.many.frag # found chain 2cveA in template set Warning: unaligning (T0506)G115 (2cveA)P135 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 2cveA 134 :V T0506 116 :PDEVPLA 2cveA 136 :FAEVGRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33214 # 1iicA.114.230 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 114 :IGPDEVPLA 1iicA 264 :LKKEDIDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33215 # 1txuA.114.77 read from T0506.t04.many.frag # found chain 1txuA in template set T0506 114 :IGPDEVPLA 1txuA 199 :VPPERVEKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33216 # 1wqgA.114.69 read from T0506.t04.many.frag # found chain 1wqgA in template set Warning: unaligning (T0506)G115 (1wqgA)E71 because E (beta_S) conformation "forbidden" or filtered. T0506 114 :I 1wqgA 70 :Y T0506 116 :PDEVPLA 1wqgA 72 :ANQLRAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33218 # 1i12A.114.12 read from T0506.t04.many.frag # found chain 1i12A in training set T0506 114 :IGPDEVPLA 1i12A 12 :MEEGDLEQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33219 # 1usyA.114.141 read from T0506.t04.many.frag # found chain 1usyA in template set T0506 114 :IGPDEVPLA 1usyA 142 :IPKDLHEKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33220 # 1vyrA.114.150 read from T0506.t04.many.frag # found chain 1vyrA in training set T0506 114 :IGPDEVPLA 1vyrA 151 :LELDEIPGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33221 # 1tuwA.114.10 read from T0506.t04.many.frag # found chain 1tuwA in template set Warning: unaligning (T0506)G115 (1tuwA)D12 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1tuwA 11 :M T0506 116 :PDEVPLA 1tuwA 13 :PADAEHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33223 1u5hA expands to /projects/compbio/data/pdb/1u5h.pdb.gz 1u5hA:# 1u5hA.114.38 read from T0506.t04.many.frag # adding 1u5hA to template set # found chain 1u5hA in template set Warning: unaligning (T0506)G115 (1u5hA)A40 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1u5hA 39 :V T0506 116 :PDEVPLA 1u5hA 41 :EAQKPAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33225 # 1jkoC.114.5 read from T0506.t04.many.frag # found chain 1jkoC in template set Warning: unaligning (T0506)G115 (1jkoC)N145 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1jkoC 144 :I T0506 116 :PDEVPLA 1jkoC 146 :KHEQEQI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33227 1to6A expands to /projects/compbio/data/pdb/1to6.pdb.gz 1to6A:# 1to6A.114.211 read from T0506.t04.many.frag # adding 1to6A to template set # found chain 1to6A in template set T0506 114 :IGPDEVPLA 1to6A 212 :LDSTMFEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33228 # 1v4pA.114.49 read from T0506.t04.many.frag # found chain 1v4pA in training set T0506 114 :IGPDEVPLA 1v4pA 50 :PSDEEIREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33229 1d2tA expands to /projects/compbio/data/pdb/1d2t.pdb.gz 1d2tA:# 1d2tA.114.86 read from T0506.t04.many.frag # adding 1d2tA to template set # found chain 1d2tA in template set T0506 114 :IGPDEVPLA 1d2tA 87 :ITEKDAPAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33230 # 1vpqA.114.223 read from T0506.t04.many.frag # found chain 1vpqA in template set Warning: unaligning (T0506)G115 (1vpqA)S213 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1vpqA 212 :Y T0506 116 :PDEVPLA 1vpqA 214 :EEELKTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33232 # 1pea.114.180 read from T0506.t04.many.frag # found chain 1pea in template set T0506 114 :IGPDEVPLA 1pea 181 :PSDDDLQRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33233 # 1y0hA.114.16 read from T0506.t04.many.frag # found chain 1y0hA in training set Warning: unaligning (T0506)G115 (1y0hA)R15 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1y0hA 14 :P T0506 116 :PDEVPLA 1y0hA 16 :PDARSAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33235 # 1jh6A.114.126 read from T0506.t04.many.frag # found chain 1jh6A in training set T0506 114 :IGPDEVPLA 1jh6A 127 :LTEEEKKNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33236 # 1jk0B.114.73 read from T0506.t04.many.frag # found chain 1jk0B in template set T0506 114 :IGPDEVPLA 1jk0B 74 :LTDDQKTYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33237 1xxaA expands to /projects/compbio/data/pdb/1xxa.pdb.gz 1xxaA:# 1xxaA.114.21 read from T0506.t04.many.frag # adding 1xxaA to template set # found chain 1xxaA in template set T0506 114 :IGPDEVPLA 1xxaA 100 :TSPGAAQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33238 # 1g61A.114.166 read from T0506.t04.many.frag # found chain 1g61A in training set T0506 114 :IGPDEVPLA 1g61A 2167 :VEDDELEFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33239 # 1vfjA.114.7 read from T0506.t04.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)G115 (1vfjA)R9 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1vfjA 8 :V T0506 116 :PDEVPLA 1vfjA 10 :PEKLNEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33241 # 1nofA.114.100 read from T0506.t04.many.frag # found chain 1nofA in training set Warning: unaligning (T0506)G115 (1nofA)L132 because P (beta_P) conformation "forbidden" or filtered. T0506 114 :I 1nofA 131 :L T0506 116 :PDEVPLA 1nofA 133 :PANYSAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=33243 # 1hynP.114.144 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 114 :IGPDEVPLA 1hynP 145 :IRPQDREEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33244 # 1xhnA.115.123 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 115 :GPDEVPLAI 1xhnA 124 :NETEMDIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33245 # 2cveA.115.134 read from T0506.t04.many.frag # found chain 2cveA in template set Warning: unaligning (T0506)G115 (2cveA)P135 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 2cveA 136 :FAEVGRVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33246 # 1yreA.115.27 read from T0506.t04.many.frag # found chain 1yreA in template set T0506 115 :GPDEVPLAI 1yreA 26 :VEADIPELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33247 # 2fckA.115.20 read from T0506.t04.many.frag # found chain 2fckA in template set T0506 115 :GPDEVPLAI 2fckA 18 :TADEAEELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33248 # 1l6rA.115.119 read from T0506.t04.many.frag # found chain 1l6rA in training set T0506 115 :GPDEVPLAI 1l6rA 117 :DPEDVDYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33249 # 1wqgA.115.70 read from T0506.t04.many.frag # found chain 1wqgA in template set T0506 115 :GPDEVPLAI 1wqgA 71 :EANQLRAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33250 # 1tuwA.115.11 read from T0506.t04.many.frag # found chain 1tuwA in template set T0506 115 :GPDEVPLAI 1tuwA 12 :DPADAEHVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33251 # 2f2bA.115.95 read from T0506.t04.many.frag # found chain 2f2bA in template set T0506 115 :GPDEVPLAI 2f2bA 96 :PGREVVPYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33252 # 1usyA.115.142 read from T0506.t04.many.frag # found chain 1usyA in template set Warning: unaligning (T0506)G115 (1usyA)P143 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1usyA 144 :KDLHEKVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33253 # 1f06A.115.201 read from T0506.t04.many.frag # found chain 1f06A in template set T0506 115 :GPDEVPLAI 1f06A 202 :DAADHERIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33254 # 1vfjA.115.8 read from T0506.t04.many.frag # found chain 1vfjA in training set Warning: unaligning (T0506)G115 (1vfjA)R9 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1vfjA 10 :PEKLNEVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33255 # 1wwhA.115.32 read from T0506.t04.many.frag # found chain 1wwhA in template set T0506 115 :GPDEVPLAI 1wwhA 181 :PQASASYIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33256 # 1eayC.115.13 read from T0506.t04.many.frag # found chain 1eayC in template set Warning: unaligning (T0506)D117 (1eayC)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 115 :GP 1eayC 168 :KA T0506 118 :EVPLAI 1eayC 171 :EVDLLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33258 # 1iicA.115.231 read from T0506.t04.many.frag # found chain 1iicA in template set Warning: unaligning (T0506)G115 (1iicA)K265 because E (beta_S) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1iicA 266 :KEDIDQVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=33259 # 1u5hA.115.39 read from T0506.t04.many.frag # found chain 1u5hA in template set Warning: unaligning (T0506)G115 (1u5hA)A40 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1u5hA 41 :EAQKPAAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33260 # 1xizA.115.112 read from T0506.t04.many.frag # found chain 1xizA in template set T0506 115 :GPDEVPLAI 1xizA 111 :ESNKQLNVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33261 # 1ne2A.115.146 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 115 :GPDEVPLAI 1ne2A 144 :NAKARDFLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33262 # 1xxaA.115.22 read from T0506.t04.many.frag # found chain 1xxaA in template set Warning: unaligning (T0506)D117 (1xxaA)G103 because T (delta_L) conformation "forbidden" or filtered. T0506 115 :GP 1xxaA 101 :SP T0506 118 :EVPLAI 1xxaA 104 :AAQLIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33264 # 1hynP.115.145 read from T0506.t04.many.frag # found chain 1hynP in template set Warning: unaligning (T0506)G115 (1hynP)R146 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1hynP 147 :PQDREELL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33265 # 1nofA.115.101 read from T0506.t04.many.frag # found chain 1nofA in training set T0506 115 :GPDEVPLAI 1nofA 132 :LPANYSAYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33266 # 1i12A.115.13 read from T0506.t04.many.frag # found chain 1i12A in training set T0506 115 :GPDEVPLAI 1i12A 13 :EEGDLEQVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33267 # 1jkoC.115.6 read from T0506.t04.many.frag # found chain 1jkoC in template set Warning: unaligning (T0506)G115 (1jkoC)N145 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1jkoC 146 :KHEQEQIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=33268 # 2aenA.115.148 read from T0506.t04.many.frag # found chain 2aenA in template set Warning: unaligning (T0506)G115 (2aenA)P208 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 2aenA 209 :RSQESKCN Number of specific fragments extracted= 1 number of extra gaps= 1 total=33269 # 1u60A.115.226 read from T0506.t04.many.frag # found chain 1u60A in training set Warning: unaligning (T0506)G115 (1u60A)Q227 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1u60A 228 :ADNVPYIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33270 # 2bbrA.115.107 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 115 :GPDEVPLAI 2bbrA 108 :DSSELRALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33271 # 1y0hA.115.17 read from T0506.t04.many.frag # found chain 1y0hA in training set Warning: unaligning (T0506)G115 (1y0hA)R15 because P (beta_P) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1y0hA 16 :PDARSALR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33272 # 1w1hA.115.25 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 115 :GPDEVPLAI 1w1hA 431 :SEDEKRLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33273 # 1sqwA.115.4 read from T0506.t04.many.frag # found chain 1sqwA in template set T0506 115 :GPDEVPLAI 1sqwA 5 :TEEETRVMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33274 # 1d2tA.115.87 read from T0506.t04.many.frag # found chain 1d2tA in template set Warning: unaligning (T0506)G115 (1d2tA)T88 because E (beta_S) conformation "forbidden" or filtered. T0506 116 :PDEVPLAI 1d2tA 89 :EKDAPALH Number of specific fragments extracted= 1 number of extra gaps= 1 total=33275 # 1q8dA.115.39 read from T0506.t04.many.frag # found chain 1q8dA in training set T0506 115 :GPDEVPLAI 1q8dA 278 :LKENYADCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33276 # 1yreA.116.28 read from T0506.t04.many.frag # found chain 1yreA in template set T0506 116 :PDEVPLAIA 1yreA 27 :EADIPELVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33277 # 1tuwA.116.12 read from T0506.t04.many.frag # found chain 1tuwA in template set T0506 116 :PDEVPLAIA 1tuwA 13 :PADAEHVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33278 # 1usyA.116.143 read from T0506.t04.many.frag # found chain 1usyA in template set T0506 116 :PDEVPLAIA 1usyA 144 :KDLHEKVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33279 # 1xhnA.116.124 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 116 :PDEVPLAIA 1xhnA 125 :ETEMDIAKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33280 # 1uc2A.116.112 read from T0506.t04.many.frag # found chain 1uc2A in template set T0506 116 :PDEVPLAIA 1uc2A 113 :RPRIKQLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33281 # 2cveA.116.135 read from T0506.t04.many.frag # found chain 2cveA in template set T0506 116 :PDEVPLAIA 2cveA 136 :FAEVGRVYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33282 # 2bbrA.116.108 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 116 :PDEVPLAIA 2bbrA 109 :SSELRALRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33283 # 1vfjA.116.9 read from T0506.t04.many.frag # found chain 1vfjA in training set T0506 116 :PDEVPLAIA 1vfjA 10 :PEKLNEVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33284 # 1ne2A.116.147 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 116 :PDEVPLAIA 1ne2A 145 :AKARDFLRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33285 # 1u5hA.116.40 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 116 :PDEVPLAIA 1u5hA 41 :EAQKPAARN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33286 # 2f2bA.116.96 read from T0506.t04.many.frag # found chain 2f2bA in template set T0506 116 :PDEVPLAIA 2f2bA 97 :GREVVPYII Number of specific fragments extracted= 1 number of extra gaps= 0 total=33287 # 1l6rA.116.120 read from T0506.t04.many.frag # found chain 1l6rA in training set T0506 116 :PDEVPLAIA 1l6rA 118 :PEDVDYVRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33288 # 1o97D.116.214 read from T0506.t04.many.frag # found chain 1o97D in training set T0506 116 :PDEVPLAIA 1o97D 215 :ETNVEQFRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33289 # 1eayC.116.14 read from T0506.t04.many.frag # found chain 1eayC in template set Warning: unaligning (T0506)D117 (1eayC)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 116 :P 1eayC 169 :A T0506 118 :EVPLAIA 1eayC 171 :EVDLLEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33291 # 1umgA.116.181 read from T0506.t04.many.frag # found chain 1umgA in training set Warning: unaligning (T0506)P116 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1umgA)Q185 Warning: unaligning (T0506)D117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1umgA)Q185 T0506 118 :EVPLAIA 1umgA 186 :EIYDLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33292 # 1uj8A.116.15 read from T0506.t04.many.frag # found chain 1uj8A in training set T0506 116 :PDEVPLAIA 1uj8A 16 :WTDSREIGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33293 # 1o59A.116.17 read from T0506.t04.many.frag # found chain 1o59A in template set T0506 116 :PDEVPLAIA 1o59A 6 :LADEAEFKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33294 1ofcX expands to /projects/compbio/data/pdb/1ofc.pdb.gz 1ofcX:Skipped atom 744, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 934, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 936, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 938, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 940, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 942, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1428, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1430, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1432, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1436, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1820, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1822, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1824, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1851, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1853, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1855, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1857, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1859, because occupancy 0.500 <= existing 0.500 in 1ofcX # 1ofcX.116.144 read from T0506.t04.many.frag # adding 1ofcX to template set # found chain 1ofcX in template set T0506 116 :PDEVPLAIA 1ofcX 832 :PEEVIEYNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33295 # 1nofA.116.102 read from T0506.t04.many.frag # found chain 1nofA in training set T0506 116 :PDEVPLAIA 1nofA 133 :PANYSAYTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33296 # 1pv5A.116.178 read from T0506.t04.many.frag # found chain 1pv5A in training set T0506 116 :PDEVPLAIA 1pv5A 176 :GEDEEDIYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33297 1t7lA expands to /projects/compbio/data/pdb/1t7l.pdb.gz 1t7lA:# 1t7lA.116.710 read from T0506.t04.many.frag # adding 1t7lA to template set # found chain 1t7lA in template set T0506 116 :PDEVPLAIA 1t7lA 679 :INEMREIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33298 # 1zvdA.116.206 read from T0506.t04.many.frag # found chain 1zvdA in template set Warning: unaligning (T0506)P116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zvdA)E575 Warning: unaligning (T0506)D117 because of BadResidue code BAD_PEPTIDE at template residue (1zvdA)E576 Warning: unaligning (T0506)E118 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zvdA)N577 Warning: unaligning (T0506)V119 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1zvdA)K578 T0506 120 :PLAIA 1zvdA 579 :KEYVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33299 # 2cy7A.116.38 read from T0506.t04.many.frag # found chain 2cy7A in template set T0506 116 :PDEVPLAIA 2cy7A 36 :FTEKDEILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33300 # 1dp4A.116.192 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 116 :PDEVPLAIA 1dp4A 193 :PDHYPKLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33301 # 1u55A.116.44 read from T0506.t04.many.frag # found chain 1u55A in training set T0506 116 :PDEVPLAIA 1u55A 45 :DDEVRRIFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33302 # 1iicA.116.232 read from T0506.t04.many.frag # found chain 1iicA in template set T0506 116 :PDEVPLAIA 1iicA 266 :KEDIDQVFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33303 # 1otjA.116.214 read from T0506.t04.many.frag # found chain 1otjA in template set T0506 116 :PDEVPLAIA 1otjA 215 :EKESEALLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33304 # 1jkoC.116.7 read from T0506.t04.many.frag # found chain 1jkoC in template set T0506 116 :PDEVPLAIA 1jkoC 146 :KHEQEQISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33305 # 1vgjA.116.50 read from T0506.t04.many.frag # found chain 1vgjA in template set T0506 116 :PDEVPLAIA 1vgjA 51 :EEQAEEIKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33306 # 1pot.116.165 read from T0506.t04.many.frag # found chain 1pot in training set T0506 116 :PDEVPLAIA 1pot 189 :PKEIEAAYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33307 # 1usyA.117.144 read from T0506.t04.many.frag # found chain 1usyA in template set T0506 117 :DEVPLAIAR 1usyA 145 :DLHEKVLNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33308 # 1yreA.117.29 read from T0506.t04.many.frag # found chain 1yreA in template set T0506 117 :DEVPLAIAR 1yreA 28 :ADIPELVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33309 # 1uc2A.117.113 read from T0506.t04.many.frag # found chain 1uc2A in template set T0506 117 :DEVPLAIAR 1uc2A 114 :PRIKQLVDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33310 # 1xhnA.117.125 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 117 :DEVPLAIAR 1xhnA 126 :TEMDIAKHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33311 # 1u5hA.117.41 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 117 :DEVPLAIAR 1u5hA 42 :AQKPAARNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33312 # 1fm0D.117.25 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 117 :DEVPLAIAR 1fm0D 26 :PTVEALRQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33313 # 2bbrA.117.109 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 117 :DEVPLAIAR 2bbrA 110 :SELRALRLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33314 # 1ne2A.117.148 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 117 :DEVPLAIAR 1ne2A 146 :KARDFLRRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33315 # 1dp4A.117.193 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 117 :DEVPLAIAR 1dp4A 194 :DHYPKLLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33316 # 2af4C.117.73 read from T0506.t04.many.frag # found chain 2af4C in template set Warning: unaligning (T0506)D117 because of BadResidue code BAD_PEPTIDE at template residue (2af4C)E74 T0506 118 :EVPLAIAR 2af4C 75 :KKDEYINA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33317 # 1tuwA.117.13 read from T0506.t04.many.frag # found chain 1tuwA in template set T0506 117 :DEVPLAIAR 1tuwA 14 :ADAEHVAAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33318 # 1t7lA.117.711 read from T0506.t04.many.frag # found chain 1t7lA in template set T0506 117 :DEVPLAIAR 1t7lA 680 :NEMREIVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33319 # 1vfjA.117.10 read from T0506.t04.many.frag # found chain 1vfjA in training set T0506 117 :DEVPLAIAR 1vfjA 11 :EKLNEVLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33320 # 1pot.117.166 read from T0506.t04.many.frag # found chain 1pot in training set T0506 117 :DEVPLAIAR 1pot 190 :KEIEAAYNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33321 # 2asfA.117.94 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 117 :DEVPLAIAR 2asfA 95 :DAVRDAELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33322 # 1u55A.117.45 read from T0506.t04.many.frag # found chain 1u55A in training set T0506 117 :DEVPLAIAR 1u55A 46 :DEVRRIFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33323 1yj7A expands to /projects/compbio/data/pdb/1yj7.pdb.gz 1yj7A:Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 140, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 1136, because occupancy 0.500 <= existing 0.500 in 1yj7A Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 1yj7A # 1yj7A.117.137 read from T0506.t04.many.frag # adding 1yj7A to template set # found chain 1yj7A in template set T0506 117 :DEVPLAIAR 1yj7A 157 :PSVIQIKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33324 1knwA expands to /projects/compbio/data/pdb/1knw.pdb.gz 1knwA:Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 1711, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 1713, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 1999, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2003, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2005, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2007, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2009, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2011, because occupancy 0.500 <= existing 0.500 in 1knwA Skipped atom 2013, because occupancy 0.500 <= existing 0.500 in 1knwA # 1knwA.117.168 read from T0506.t04.many.frag # adding 1knwA to template set # found chain 1knwA in template set T0506 117 :DEVPLAIAR 1knwA 169 :TDLPAALDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33325 # 1pv5A.117.179 read from T0506.t04.many.frag # found chain 1pv5A in training set T0506 117 :DEVPLAIAR 1pv5A 177 :EDEEDIYNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33326 # 1uzbA.117.73 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 117 :DEVPLAIAR 1uzbA 74 :AEAEAALEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33327 # 1rqbA.117.283 read from T0506.t04.many.frag # found chain 1rqbA in template set T0506 117 :DEVPLAIAR 1rqbA 273 :DRLHKIRDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33328 # 1mw9X.117.251 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 117 :DEVPLAIAR 1mw9X 252 :EQTQAAVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33329 # 1xy7A.117.34 read from T0506.t04.many.frag # found chain 1xy7A in training set Warning: unaligning (T0506)D117 (1xy7A)Q35 because T (delta_L) conformation "forbidden" or filtered. T0506 118 :EVPLAIAR 1xy7A 36 :KVGDAVTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=33330 # 1c7nA.117.183 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 117 :DEVPLAIAR 1c7nA 184 :DELQKIKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33331 # 1ofcX.117.145 read from T0506.t04.many.frag # found chain 1ofcX in template set T0506 117 :DEVPLAIAR 1ofcX 833 :EEVIEYNAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33332 # 1eayC.117.15 read from T0506.t04.many.frag # found chain 1eayC in template set Warning: unaligning (T0506)D117 (1eayC)G170 because T (delta_L) conformation "forbidden" or filtered. T0506 118 :EVPLAIAR 1eayC 171 :EVDLLEEE Number of specific fragments extracted= 1 number of extra gaps= 1 total=33333 # 2cy7A.117.39 read from T0506.t04.many.frag # found chain 2cy7A in template set T0506 117 :DEVPLAIAR 2cy7A 37 :TEKDEILSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33334 # 1l6rA.117.121 read from T0506.t04.many.frag # found chain 1l6rA in training set T0506 117 :DEVPLAIAR 1l6rA 119 :EDVDYVRKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33335 # 1qopB.117.328 read from T0506.t04.many.frag # found chain 1qopB in training set T0506 117 :DEVPLAIAR 1qopB 330 :DEALEAFKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33336 # 1oxxK.117.173 read from T0506.t04.many.frag # found chain 1oxxK in training set T0506 117 :DEVPLAIAR 1oxxK 174 :RMRDSARAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33337 # 1usyA.118.145 read from T0506.t04.many.frag # found chain 1usyA in template set T0506 118 :EVPLAIARY 1usyA 146 :LHEKVLNLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33338 # 1uc2A.118.114 read from T0506.t04.many.frag # found chain 1uc2A in template set T0506 118 :EVPLAIARY 1uc2A 115 :RIKQLVDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33339 # 1u5hA.118.42 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 118 :EVPLAIARY 1u5hA 43 :QKPAARNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33340 # 1fm0D.118.26 read from T0506.t04.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)E118 (1fm0D)T27 because Y (epsilon') conformation "forbidden" or filtered. T0506 119 :VPLAIARY 1fm0D 28 :VEALRQHM Number of specific fragments extracted= 1 number of extra gaps= 1 total=33341 # 1yreA.118.30 read from T0506.t04.many.frag # found chain 1yreA in template set T0506 118 :EVPLAIARY 1yreA 29 :DIPELVSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33342 # 1xhnA.118.126 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 118 :EVPLAIARY 1xhnA 127 :EMDIAKHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33343 # 2af4C.118.74 read from T0506.t04.many.frag # found chain 2af4C in template set T0506 118 :EVPLAIARY 2af4C 75 :KKDEYINAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33344 # 2bbrA.118.110 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 118 :EVPLAIARY 2bbrA 111 :ELRALRLFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33345 # 1pv5A.118.180 read from T0506.t04.many.frag # found chain 1pv5A in training set T0506 118 :EVPLAIARY 1pv5A 178 :DEEDIYNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33346 # 1dp4A.118.194 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 118 :EVPLAIARY 1dp4A 195 :HYPKLLRAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33347 # 1pot.118.167 read from T0506.t04.many.frag # found chain 1pot in training set T0506 118 :EVPLAIARY 1pot 191 :EIEAAYNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33348 # 1knwA.118.169 read from T0506.t04.many.frag # found chain 1knwA in template set T0506 118 :EVPLAIARY 1knwA 170 :DLPAALDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33349 # 1t7lA.118.712 read from T0506.t04.many.frag # found chain 1t7lA in template set T0506 118 :EVPLAIARY 1t7lA 681 :EMREIVERV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33350 # 1uzbA.118.74 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 118 :EVPLAIARY 1uzbA 75 :EAEAALEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33351 # 1mw9X.118.252 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 118 :EVPLAIARY 1mw9X 253 :QTQAAVSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33352 # 1u55A.118.46 read from T0506.t04.many.frag # found chain 1u55A in training set T0506 118 :EVPLAIARY 1u55A 47 :EVRRIFAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33353 # 1yj7A.118.138 read from T0506.t04.many.frag # found chain 1yj7A in template set T0506 118 :EVPLAIARY 1yj7A 158 :SVIQIKNLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33354 # 1qopB.118.329 read from T0506.t04.many.frag # found chain 1qopB in training set T0506 118 :EVPLAIARY 1qopB 331 :EALEAFKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33355 # 1ne2A.118.149 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 118 :EVPLAIARY 1ne2A 147 :ARDFLRREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33356 # 1rqbA.118.284 read from T0506.t04.many.frag # found chain 1rqbA in template set T0506 118 :EVPLAIARY 1rqbA 274 :RLHKIRDHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33357 # 1xy7A.118.35 read from T0506.t04.many.frag # found chain 1xy7A in training set T0506 118 :EVPLAIARY 1xy7A 36 :KVGDAVTFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33358 1j5sA expands to /projects/compbio/data/pdb/1j5s.pdb.gz 1j5sA:# 1j5sA.118.130 read from T0506.t04.many.frag # adding 1j5sA to template set # found chain 1j5sA in template set T0506 118 :EVPLAIARY 1j5sA 119 :TAEEIWEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=33359 # 2asfA.118.95 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 118 :EVPLAIARY 2asfA 96 :AVRDAELRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33360 # 1ofcX.118.146 read from T0506.t04.many.frag # found chain 1ofcX in template set T0506 118 :EVPLAIARY 1ofcX 834 :EVIEYNAVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33361 # 1vfjA.118.11 read from T0506.t04.many.frag # found chain 1vfjA in training set T0506 118 :EVPLAIARY 1vfjA 12 :KLNEVLKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33362 # 1c7nA.118.184 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 118 :EVPLAIARY 1c7nA 185 :ELQKIKDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33363 # 1rjdA.118.210 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 118 :EVPLAIARY 1rjdA 211 :ESQLLINTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33364 # 1oxxK.118.174 read from T0506.t04.many.frag # found chain 1oxxK in training set T0506 118 :EVPLAIARY 1oxxK 175 :MRDSARALV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33365 1bvoA expands to /projects/compbio/data/pdb/1bvo.pdb.gz 1bvoA:# 1bvoA.118.108 read from T0506.t04.many.frag # adding 1bvoA to template set # found chain 1bvoA in template set T0506 118 :EVPLAIARY 1bvoA 156 :DVEEALRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33366 # 2fcjA.118.61 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 118 :EVPLAIARY 2fcjA 62 :AGEKLRRQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33367 # 1xhnA.119.127 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 119 :VPLAIARYI 1xhnA 128 :MDIAKHSLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33368 # 1usyA.119.146 read from T0506.t04.many.frag # found chain 1usyA in template set T0506 119 :VPLAIARYI 1usyA 147 :HEKVLNLID Number of specific fragments extracted= 1 number of extra gaps= 0 total=33369 # 1uc2A.119.115 read from T0506.t04.many.frag # found chain 1uc2A in template set T0506 119 :VPLAIARYI 1uc2A 116 :IKQLVDTLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33370 # 1fm0D.119.27 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 119 :VPLAIARYI 1fm0D 28 :VEALRQHMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33371 1oeyA expands to /projects/compbio/data/pdb/1oey.pdb.gz 1oeyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1oeyA.119.25 read from T0506.t04.many.frag # adding 1oeyA to template set # found chain 1oeyA in template set T0506 119 :VPLAIARYI 1oeyA 372 :YSQVRDMVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33372 # 1ne2A.119.150 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 119 :VPLAIARYI 1ne2A 148 :RDFLRREFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33373 # 2fcjA.119.62 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 119 :VPLAIARYI 2fcjA 63 :GEKLRRQFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33374 # 1c7nA.119.185 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 119 :VPLAIARYI 1c7nA 186 :LQKIKDIVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33375 # 1t7lA.119.713 read from T0506.t04.many.frag # found chain 1t7lA in template set T0506 119 :VPLAIARYI 1t7lA 682 :MREIVERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33376 # 1zsqA.119.102 read from T0506.t04.many.frag # found chain 1zsqA in template set T0506 119 :VPLAIARYI 1zsqA 172 :RRSIFENLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33377 # 1uj8A.119.18 read from T0506.t04.many.frag # found chain 1uj8A in training set T0506 119 :VPLAIARYI 1uj8A 19 :SREIGEALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33378 # 1rqbA.119.285 read from T0506.t04.many.frag # found chain 1rqbA in template set T0506 119 :VPLAIARYI 1rqbA 275 :LHKIRDHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33379 # 1vl7A.119.114 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 119 :VPLAIARYI 1vl7A 103 :WNQVVDQFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33380 # 1y1pA.119.47 read from T0506.t04.many.frag # found chain 1y1pA in template set T0506 119 :VPLAIARYI 1y1pA 49 :LANLQKRWD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33381 # 1rjdA.119.211 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 119 :VPLAIARYI 1rjdA 212 :SQLLINTIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33382 # 1u5hA.119.43 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 119 :VPLAIARYI 1u5hA 44 :KPAARNALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33383 # 2af4C.119.75 read from T0506.t04.many.frag # found chain 2af4C in template set T0506 119 :VPLAIARYI 2af4C 76 :KDEYINAFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33384 # 2bbrA.119.111 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 119 :VPLAIARYI 2bbrA 112 :LRALRLFAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=33385 # 1mw9X.119.253 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 119 :VPLAIARYI 1mw9X 254 :TQAAVSLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33386 # 1no1A.119.5 read from T0506.t04.many.frag # found chain 1no1A in template set T0506 119 :VPLAIARYI 1no1A 6 :VVQILKAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33387 # 1knwA.119.170 read from T0506.t04.many.frag # found chain 1knwA in template set T0506 119 :VPLAIARYI 1knwA 171 :LPAALDVIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33388 # 1w1hA.119.29 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 119 :VPLAIARYI 1w1hA 435 :KRLLLEKQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33389 # 1u55A.119.47 read from T0506.t04.many.frag # found chain 1u55A in training set T0506 119 :VPLAIARYI 1u55A 48 :VRRIFAKVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33390 2acvA expands to /projects/compbio/data/pdb/2acv.pdb.gz 2acvA:# 2acvA.119.262 read from T0506.t04.many.frag # adding 2acvA to template set # found chain 2acvA in template set T0506 119 :VPLAIARYI 2acvA 263 :HDLILKWLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33391 # 1pv5A.119.181 read from T0506.t04.many.frag # found chain 1pv5A in training set T0506 119 :VPLAIARYI 1pv5A 179 :EEDIYNELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33392 # 1uzbA.119.75 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 119 :VPLAIARYI 1uzbA 76 :AEAALEAAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33393 # 1pot.119.168 read from T0506.t04.many.frag # found chain 1pot in training set T0506 119 :VPLAIARYI 1pot 192 :IEAAYNELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33394 # 1w6kA.119.172 read from T0506.t04.many.frag # found chain 1w6kA in template set T0506 119 :VPLAIARYI 1w6kA 173 :LVRARNILH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33395 # 1yj7A.119.139 read from T0506.t04.many.frag # found chain 1yj7A in template set T0506 119 :VPLAIARYI 1yj7A 159 :VIQIKNLVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33396 # 1yovA.119.242 read from T0506.t04.many.frag # found chain 1yovA in template set T0506 119 :VPLAIARYI 1yovA 240 :KEDFRDLIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33397 # 1xhnA.120.128 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 120 :PLAIARYIA 1xhnA 129 :DIAKHSLFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33398 # 1uc2A.120.116 read from T0506.t04.many.frag # found chain 1uc2A in template set T0506 120 :PLAIARYIA 1uc2A 117 :KQLVDTLFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33399 # 1vl7A.120.115 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 120 :PLAIARYIA 1vl7A 104 :NQVVDQFQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33400 # 1fm0D.120.28 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 120 :PLAIARYIA 1fm0D 29 :EALRQHMAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33401 # 1oeyA.120.26 read from T0506.t04.many.frag # found chain 1oeyA in template set T0506 120 :PLAIARYIA 1oeyA 373 :SQVRDMVSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33402 # 1zsqA.120.103 read from T0506.t04.many.frag # found chain 1zsqA in template set T0506 120 :PLAIARYIA 1zsqA 173 :RSIFENLMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33403 # 1t7lA.120.714 read from T0506.t04.many.frag # found chain 1t7lA in template set T0506 120 :PLAIARYIA 1t7lA 683 :REIVERVLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33404 # 1w6kA.120.173 read from T0506.t04.many.frag # found chain 1w6kA in template set T0506 120 :PLAIARYIA 1w6kA 174 :VRARNILHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33405 # 1c7nA.120.186 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 120 :PLAIARYIA 1c7nA 187 :QKIKDIVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33406 # 2fcjA.120.63 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 120 :PLAIARYIA 2fcjA 64 :EKLRRQFRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33407 # 1floA.120.85 read from T0506.t04.many.frag # found chain 1floA in template set T0506 120 :PLAIARYIA 1floA 87 :TILEASLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33408 # 1u55A.120.48 read from T0506.t04.many.frag # found chain 1u55A in training set T0506 120 :PLAIARYIA 1u55A 49 :RRIFAKVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33409 # 1rqbA.120.286 read from T0506.t04.many.frag # found chain 1rqbA in template set T0506 120 :PLAIARYIA 1rqbA 276 :HKIRDHFKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33410 # 1rjdA.120.212 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 120 :PLAIARYIA 1rjdA 213 :QLLINTIMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33411 # 1usyA.120.147 read from T0506.t04.many.frag # found chain 1usyA in template set T0506 120 :PLAIARYIA 1usyA 148 :EKVLNLIDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33412 # 2f62A.120.147 read from T0506.t04.many.frag # found chain 2f62A in template set T0506 120 :PLAIARYIA 2f62A 148 :ESAFKYFLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33413 # 1y1pA.120.48 read from T0506.t04.many.frag # found chain 1y1pA in template set T0506 120 :PLAIARYIA 1y1pA 50 :ANLQKRWDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33414 # 1uj8A.120.19 read from T0506.t04.many.frag # found chain 1uj8A in training set T0506 120 :PLAIARYIA 1uj8A 20 :REIGEALYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33415 # 1ne2A.120.151 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 120 :PLAIARYIA 1ne2A 149 :DFLRREFSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33416 1rkxA expands to /projects/compbio/data/pdb/1rkx.pdb.gz 1rkxA:# 1rkxA.120.272 read from T0506.t04.many.frag # adding 1rkxA to template set # found chain 1rkxA in template set T0506 120 :PLAIARYIA 1rkxA 273 :KNIVEQMVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33417 # 1mw9X.120.254 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 120 :PLAIARYIA 1mw9X 255 :QAAVSLLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33418 # 1uzbA.120.76 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 120 :PLAIARYIA 1uzbA 77 :EAALEAAWK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33419 # 1w1hA.120.30 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 120 :PLAIARYIA 1w1hA 436 :RLLLEKQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33420 # 1u5hA.120.44 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 120 :PLAIARYIA 1u5hA 45 :PAARNALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33421 # 1j5sA.120.132 read from T0506.t04.many.frag # found chain 1j5sA in template set T0506 120 :PLAIARYIA 1j5sA 121 :EEIWEETKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33422 # 1zx1A.120.201 read from T0506.t04.many.frag # found chain 1zx1A in template set T0506 120 :PLAIARYIA 1zx1A 201 :KGMVAAWSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33423 # 1pv5A.120.182 read from T0506.t04.many.frag # found chain 1pv5A in training set T0506 120 :PLAIARYIA 1pv5A 180 :EDIYNELAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33424 # 1no1A.120.6 read from T0506.t04.many.frag # found chain 1no1A in template set T0506 120 :PLAIARYIA 1no1A 7 :VQILKAVSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33425 # 2af4C.120.76 read from T0506.t04.many.frag # found chain 2af4C in template set T0506 120 :PLAIARYIA 2af4C 77 :DEYINAFYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33426 # 2asfA.120.97 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 120 :PLAIARYIA 2asfA 98 :RDAELRYAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33427 # 1xhnA.121.129 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 121 :LAIARYIAR 1xhnA 130 :IAKHSLFIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33428 # 1vl7A.121.116 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 121 :LAIARYIAR 1vl7A 105 :QVVDQFQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33429 # 1uj8A.121.20 read from T0506.t04.many.frag # found chain 1uj8A in training set T0506 121 :LAIARYIAR 1uj8A 21 :EIGEALYDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33430 # 1y1pA.121.49 read from T0506.t04.many.frag # found chain 1y1pA in template set T0506 121 :LAIARYIAR 1y1pA 51 :NLQKRWDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33431 # 1fm0D.121.29 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 121 :LAIARYIAR 1fm0D 30 :ALRQHMAAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33432 # 1floA.121.86 read from T0506.t04.many.frag # found chain 1floA in template set T0506 121 :LAIARYIAR 1floA 88 :ILEASLKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33433 # 2fcjA.121.64 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 121 :LAIARYIAR 2fcjA 65 :KLRRQFRRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33434 # 1oeyA.121.27 read from T0506.t04.many.frag # found chain 1oeyA in template set T0506 121 :LAIARYIAR 1oeyA 374 :QVRDMVSKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33435 # 1rjdA.121.213 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 121 :LAIARYIAR 1rjdA 214 :LLINTIMSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33436 # 2f62A.121.148 read from T0506.t04.many.frag # found chain 2f62A in template set T0506 121 :LAIARYIAR 2f62A 149 :SAFKYFLAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33437 # 2asfA.121.98 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 121 :LAIARYIAR 2asfA 99 :DAELRYAQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33438 # 1zx1A.121.202 read from T0506.t04.many.frag # found chain 1zx1A in template set T0506 121 :LAIARYIAR 1zx1A 202 :GMVAAWSQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33439 # 1t82A.121.16 read from T0506.t04.many.frag # found chain 1t82A in training set Warning: unaligning (T0506)R129 (1t82A)T15 because G (3-10) conformation "forbidden" or filtered. T0506 121 :LAIARYIA 1t82A 7 :RLRQTWHS Number of specific fragments extracted= 1 number of extra gaps= 1 total=33440 # 1kgdA.121.19 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 121 :LAIARYIAR 1kgdA 749 :HIKNTLITK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33441 # 1rqbA.121.287 read from T0506.t04.many.frag # found chain 1rqbA in template set T0506 121 :LAIARYIAR 1rqbA 277 :KIRDHFKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33442 # 1sqwA.121.10 read from T0506.t04.many.frag # found chain 1sqwA in template set T0506 121 :LAIARYIAR 1sqwA 11 :VMFEKIAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33443 # 1ei9A.121.25 read from T0506.t04.many.frag # found chain 1ei9A in template set T0506 121 :LAIARYIAR 1ei9A 53 :AIKKMVEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33444 # 1kv7A.121.333 read from T0506.t04.many.frag # found chain 1kv7A in training set T0506 121 :LAIARYIAR 1kv7A 362 :MGMQMLMEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33445 # 1w1hA.121.31 read from T0506.t04.many.frag # found chain 1w1hA in training set Warning: unaligning (T0506)R129 (1w1hA)G445 because G (3-10) conformation "forbidden" or filtered. T0506 121 :LAIARYIA 1w1hA 437 :LLLEKQAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=33446 # 1no1A.121.7 read from T0506.t04.many.frag # found chain 1no1A in template set T0506 121 :LAIARYIAR 1no1A 8 :QILKAVSEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33447 # 1eayC.121.19 read from T0506.t04.many.frag # found chain 1eayC in template set T0506 121 :LAIARYIAR 1eayC 174 :LLEEELGHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33448 # 1t4bA.121.289 read from T0506.t04.many.frag # found chain 1t4bA in training set T0506 121 :LAIARYIAR 1t4bA 290 :TVEELLAAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33449 # 2btoA.121.334 read from T0506.t04.many.frag # found chain 2btoA in template set T0506 121 :LAIARYIAR 2btoA 335 :AALAAMREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33450 # 1jw9B.121.88 read from T0506.t04.many.frag # found chain 1jw9B in training set T0506 121 :LAIARYIAR 1jw9B 89 :SARDALTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33451 # 1ofcX.121.149 read from T0506.t04.many.frag # found chain 1ofcX in template set T0506 121 :LAIARYIAR 1ofcX 837 :EYNAVFWER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33452 # 1vk9A.121.138 read from T0506.t04.many.frag # found chain 1vk9A in template set T0506 121 :LAIARYIAR 1vk9A 127 :EIIRIVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33453 # 1rkxA.121.273 read from T0506.t04.many.frag # found chain 1rkxA in template set T0506 121 :LAIARYIAR 1rkxA 274 :NIVEQMVKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33454 # 1uzbA.121.77 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 121 :LAIARYIAR 1uzbA 78 :AALEAAWKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33455 # 1pdo.121.42 read from T0506.t04.many.frag # found chain 1pdo in training set T0506 121 :LAIARYIAR 1pdo 44 :TLIEKYNAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33456 # 1ne2A.121.152 read from T0506.t04.many.frag # found chain 1ne2A in training set T0506 121 :LAIARYIAR 1ne2A 150 :FLRREFSAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33457 # 1xhnA.122.130 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 122 :AIARYIARY 1xhnA 131 :AKHSLFIRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33458 # 1uj8A.122.21 read from T0506.t04.many.frag # found chain 1uj8A in training set T0506 122 :AIARYIARY 1uj8A 22 :IGEALYDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33459 # 1vl7A.122.117 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 122 :AIARYIARY 1vl7A 106 :VVDQFQERF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33460 # 2asfA.122.99 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 122 :AIARYIARY 2asfA 100 :AELRYAQRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33461 # 1y1pA.122.50 read from T0506.t04.many.frag # found chain 1y1pA in template set T0506 122 :AIARYIARY 1y1pA 52 :LQKRWDAKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33462 # 2fcjA.122.65 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 122 :AIARYIARY 2fcjA 66 :LRRQFRRMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33463 # 1rjdA.122.214 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 122 :AIARYIARY 1rjdA 215 :LINTIMSKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33464 # 1fm0D.122.30 read from T0506.t04.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)Y130 (1fm0D)S39 because Y (epsilon') conformation "forbidden" or filtered. T0506 122 :AIARYIAR 1fm0D 31 :LRQHMAAQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=33465 # 1floA.122.87 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)Y130 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 T0506 122 :AIARYIAR 1floA 89 :LEASLKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33466 # 1kgdA.122.20 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 122 :AIARYIARY 1kgdA 750 :IKNTLITKH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33467 # 2f62A.122.149 read from T0506.t04.many.frag # found chain 2f62A in template set T0506 122 :AIARYIARY 2f62A 150 :AFKYFLANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33468 # 1oeyA.122.28 read from T0506.t04.many.frag # found chain 1oeyA in template set T0506 122 :AIARYIARY 1oeyA 375 :VRDMVSKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33469 # 1zx1A.122.203 read from T0506.t04.many.frag # found chain 1zx1A in template set T0506 122 :AIARYIARY 1zx1A 203 :MVAAWSQRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33470 # 1ei9A.122.26 read from T0506.t04.many.frag # found chain 1ei9A in template set T0506 122 :AIARYIARY 1ei9A 54 :IKKMVEKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33471 # 1kv7A.122.334 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)Y130 (1kv7A)Y371 because G (3-10) conformation "forbidden" or filtered. T0506 122 :AIARYIAR 1kv7A 363 :GMQMLMEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=33472 # 1t82A.122.17 read from T0506.t04.many.frag # found chain 1t82A in training set T0506 122 :AIARYIARY 1t82A 8 :LRQTWHSTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33473 # 1t4bA.122.290 read from T0506.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0506)Y130 (1t4bA)N299 because Y (epsilon') conformation "forbidden" or filtered. T0506 122 :AIARYIAR 1t4bA 291 :VEELLAAH Number of specific fragments extracted= 1 number of extra gaps= 1 total=33474 # 1no1A.122.8 read from T0506.t04.many.frag # found chain 1no1A in template set T0506 122 :AIARYIARY 1no1A 9 :ILKAVSEFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33475 # 1u8bA.122.5 read from T0506.t04.many.frag # found chain 1u8bA in template set T0506 122 :AIARYIARY 1u8bA 12 :RWQSVLARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33476 # 1jw9B.122.89 read from T0506.t04.many.frag # found chain 1jw9B in training set T0506 122 :AIARYIARY 1jw9B 90 :ARDALTRIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33477 # 1w1hA.122.32 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 122 :AIARYIARY 1w1hA 438 :LLEKQAGGN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33478 # 2c5lC.122.34 read from T0506.t04.many.frag # found chain 2c5lC in template set T0506 122 :AIARYIARY 2c5lC 2164 :VIQQTLCKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33479 # 2btoA.122.335 read from T0506.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)R129 (2btoA)K343 because G (3-10) conformation "forbidden" or filtered. T0506 122 :AIARYIA 2btoA 336 :ALAAMRE T0506 130 :Y 2btoA 344 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=33481 # 1wn5A.122.90 read from T0506.t04.many.frag # found chain 1wn5A in template set T0506 122 :AIARYIARY 1wn5A 91 :CRQVLLDLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33482 # 1vk9A.122.139 read from T0506.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0506)Y130 because last residue in template chain is (1vk9A)F136 T0506 122 :AIARYIAR 1vk9A 128 :IIRIVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33483 # 1pdo.122.43 read from T0506.t04.many.frag # found chain 1pdo in training set T0506 122 :AIARYIARY 1pdo 45 :LIEKYNAQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33484 # 1uzbA.122.78 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 122 :AIARYIARY 1uzbA 79 :ALEAAWKAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33485 # 1sqwA.122.11 read from T0506.t04.many.frag # found chain 1sqwA in template set T0506 122 :AIARYIARY 1sqwA 12 :MFEKIAKYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33486 # 1ofcX.122.150 read from T0506.t04.many.frag # found chain 1ofcX in template set T0506 122 :AIARYIARY 1ofcX 838 :YNAVFWERC Number of specific fragments extracted= 1 number of extra gaps= 0 total=33487 # 1io0A.122.26 read from T0506.t04.many.frag # found chain 1io0A in training set Warning: unaligning (T0506)R129 (1io0A)N193 because L (left) conformation "forbidden" or filtered. T0506 122 :AIARYIA 1io0A 186 :TLKRIQN T0506 130 :Y 1io0A 194 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=33489 # 1uj8A.123.22 read from T0506.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0506)Y130 (1uj8A)Y30 because D (zeta) conformation "forbidden" or filtered. T0506 123 :IARYIAR 1uj8A 23 :GEALYDA T0506 131 :P 1uj8A 31 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=33491 # 1xhnA.123.131 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 123 :IARYIARYP 1xhnA 132 :KHSLFIRHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33492 # 1vl7A.123.118 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P131 (1vl7A)G115 because S (epsilon) conformation "forbidden" or filtered. T0506 123 :IARYIARY 1vl7A 107 :VDQFQERF Number of specific fragments extracted= 1 number of extra gaps= 1 total=33493 # 1y1pA.123.51 read from T0506.t04.many.frag # found chain 1y1pA in template set T0506 123 :IARYIARYP 1y1pA 53 :QKRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33494 # 2fcjA.123.66 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 123 :IARYIARYP 2fcjA 67 :RRQFRRMFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33495 # 1ei9A.123.27 read from T0506.t04.many.frag # found chain 1ei9A in template set T0506 123 :IARYIARYP 1ei9A 55 :KKMVEKKIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33496 # 1kgdA.123.21 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 123 :IARYIARYP 1kgdA 751 :KNTLITKHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33497 # 1t4bA.123.291 read from T0506.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0506)Y130 (1t4bA)N299 because Y (epsilon') conformation "forbidden" or filtered. T0506 123 :IARYIAR 1t4bA 292 :EELLAAH T0506 131 :P 1t4bA 300 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=33499 # 1floA.123.88 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)Y130 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 Warning: unaligning (T0506)P131 because of BadResidue code BAD_PEPTIDE at template residue (1floA)P98 T0506 123 :IARYIAR 1floA 90 :EASLKKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33500 # 2asfA.123.100 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)P131 (2asfA)R109 because Y (epsilon') conformation "forbidden" or filtered. T0506 123 :IARYIARY 2asfA 101 :ELRYAQRY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33501 # 1kv7A.123.335 read from T0506.t04.many.frag # found chain 1kv7A in training set T0506 123 :IARYIARYP 1kv7A 364 :MQMLMEKYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33502 # 1rjdA.123.215 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 123 :IARYIARYP 1rjdA 216 :INTIMSKFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33503 # 1zx1A.123.204 read from T0506.t04.many.frag # found chain 1zx1A in template set T0506 123 :IARYIARYP 1zx1A 204 :VAAWSQRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33504 # 1u8bA.123.6 read from T0506.t04.many.frag # found chain 1u8bA in template set T0506 123 :IARYIARYP 1u8bA 13 :WQSVLARDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33505 # 2btoA.123.336 read from T0506.t04.many.frag # found chain 2btoA in template set T0506 123 :IARYIARYP 2btoA 337 :LAAMREKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33506 # 2f62A.123.150 read from T0506.t04.many.frag # found chain 2f62A in template set T0506 123 :IARYIARYP 2f62A 151 :FKYFLANFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33507 # 1wn5A.123.91 read from T0506.t04.many.frag # found chain 1wn5A in template set T0506 123 :IARYIARYP 1wn5A 92 :RQVLLDLHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33508 # 1dqaA.123.246 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 123 :IARYIARYP 1dqaA 668 :LSKLHEYFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33509 # 1no1A.123.9 read from T0506.t04.many.frag # found chain 1no1A in template set T0506 123 :IARYIARYP 1no1A 10 :LKAVSEFYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33510 # 1jw9B.123.90 read from T0506.t04.many.frag # found chain 1jw9B in training set T0506 123 :IARYIARYP 1jw9B 91 :RDALTRINP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33511 # 1t82A.123.18 read from T0506.t04.many.frag # found chain 1t82A in training set T0506 123 :IARYIARYP 1t82A 9 :RQTWHSTIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33512 # 1w1hA.123.33 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 123 :IARYIARYP 1w1hA 439 :LEKQAGGNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33513 # 1fm0D.123.31 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 123 :IARYIARYP 1fm0D 32 :RQHMAAQSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33514 # 1vk9A.123.140 read from T0506.t04.many.frag # found chain 1vk9A in template set Warning: unaligning (T0506)Y130 because last residue in template chain is (1vk9A)F136 T0506 123 :IARYIAR 1vk9A 129 :IRIVLSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33515 # 1j5sA.123.135 read from T0506.t04.many.frag # found chain 1j5sA in template set T0506 123 :IARYIARYP 1j5sA 124 :WEETKKKLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33516 # 1jkoC.123.14 read from T0506.t04.many.frag # found chain 1jkoC in template set Warning: unaligning (T0506)R129 (1jkoC)G159 because L (left) conformation "forbidden" or filtered. T0506 123 :IARYIA 1jkoC 153 :SRLLEK T0506 130 :YP 1jkoC 160 :HP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33518 1kg0C expands to /projects/compbio/data/pdb/1kg0.pdb.gz 1kg0C:# 1kg0C.123.43 read from T0506.t04.many.frag # adding 1kg0C to template set # found chain 1kg0C in template set T0506 123 :IARYIARYP 1kg0C 129 :FQACAEKYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33519 # 1g66A.123.25 read from T0506.t04.many.frag # found chain 1g66A in training set T0506 123 :IARYIARYP 1g66A 26 :VNGVLSAYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33520 # 1oruA.123.135 read from T0506.t04.many.frag # found chain 1oruA in training set T0506 123 :IARYIARYP 1oruA 133 :GEVIQSYYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33521 2b99A expands to /projects/compbio/data/pdb/2b99.pdb.gz 2b99A:# 2b99A.123.21 read from T0506.t04.many.frag # adding 2b99A to template set # found chain 2b99A in template set T0506 123 :IARYIARYP 2b99A 22 :IKKLKELSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33522 # 1uj8A.124.23 read from T0506.t04.many.frag # found chain 1uj8A in training set T0506 124 :ARYIARYPK 1uj8A 24 :EALYDAYPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33523 # 1y1pA.124.52 read from T0506.t04.many.frag # found chain 1y1pA in template set Warning: unaligning (T0506)K132 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0506 124 :ARYIARYP 1y1pA 54 :KRWDAKYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33524 # 1t4bA.124.292 read from T0506.t04.many.frag # found chain 1t4bA in training set T0506 124 :ARYIARYPK 1t4bA 293 :ELLAAHNPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33525 # 1ei9A.124.28 read from T0506.t04.many.frag # found chain 1ei9A in template set T0506 124 :ARYIARYPK 1ei9A 56 :KMVEKKIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33526 # 1xhnA.124.132 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 124 :ARYIARYPK 1xhnA 133 :HSLFIRHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33527 # 2fcjA.124.67 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 124 :ARYIARYPK 2fcjA 68 :RQFRRMFPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33528 # 1kgdA.124.22 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 124 :ARYIARYPK 1kgdA 752 :NTLITKHPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33529 # 1vl7A.124.119 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 124 :ARYIARYPK 1vl7A 108 :DQFQERFGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33530 # 1no1A.124.10 read from T0506.t04.many.frag # found chain 1no1A in template set Warning: unaligning (T0506)K132 (1no1A)G19 because L (left) conformation "forbidden" or filtered. T0506 124 :ARYIARYP 1no1A 11 :KAVSEFYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33531 # 1g66A.124.26 read from T0506.t04.many.frag # found chain 1g66A in training set T0506 124 :ARYIARYPK 1g66A 27 :NGVLSAYPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33532 # 1u8bA.124.7 read from T0506.t04.many.frag # found chain 1u8bA in template set T0506 124 :ARYIARYPK 1u8bA 14 :QSVLARDPN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33533 # 1kg0C.124.44 read from T0506.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0506)K132 (1kg0C)C138 because L (left) conformation "forbidden" or filtered. T0506 124 :ARYIARYP 1kg0C 130 :QACAEKYP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33534 # 2bbrA.124.116 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 124 :ARYIARYPK 2bbrA 117 :LFACNLNPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33535 # 2asfA.124.101 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)P131 (2asfA)R109 because Y (epsilon') conformation "forbidden" or filtered. T0506 124 :ARYIARY 2asfA 102 :LRYAQRY T0506 132 :K 2asfA 110 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=33537 # 1wn5A.124.92 read from T0506.t04.many.frag # found chain 1wn5A in template set T0506 124 :ARYIARYPK 1wn5A 93 :QVLLDLHPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33538 # 1kv7A.124.336 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)P131 (1kv7A)G372 because S (epsilon) conformation "forbidden" or filtered. T0506 124 :ARYIARY 1kv7A 365 :QMLMEKY T0506 132 :K 1kv7A 373 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=33540 # 1w1hA.124.34 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 124 :ARYIARYPK 1w1hA 440 :EKQAGGNPW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33541 # 1zx1A.124.205 read from T0506.t04.many.frag # found chain 1zx1A in template set T0506 124 :ARYIARYPK 1zx1A 205 :AAWSQRLQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33542 # 1jw9B.124.91 read from T0506.t04.many.frag # found chain 1jw9B in training set T0506 124 :ARYIARYPK 1jw9B 92 :DALTRINPH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33543 # 1floA.124.89 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)Y130 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 Warning: unaligning (T0506)P131 because of BadResidue code BAD_PEPTIDE at template residue (1floA)P98 T0506 124 :ARYIAR 1floA 91 :ASLKKL T0506 132 :K 1floA 99 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=33545 # 1h6fA.124.172 read from T0506.t04.many.frag # found chain 1h6fA in training set T0506 124 :ARYIARYPK 1h6fA 271 :QLKIDNNPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33546 # 1vbwA.124.21 read from T0506.t04.many.frag # found chain 1vbwA in training set T0506 124 :ARYIARYPK 1vbwA 22 :AVIERENPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33547 # 1rjdA.124.216 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 124 :ARYIARYPK 1rjdA 217 :NTIMSKFSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33548 # 1j5sA.124.136 read from T0506.t04.many.frag # found chain 1j5sA in template set T0506 124 :ARYIARYPK 1j5sA 125 :EETKKKLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33549 # 1oruA.124.136 read from T0506.t04.many.frag # found chain 1oruA in training set T0506 124 :ARYIARYPK 1oruA 134 :EVIQSYYPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33550 # 1dqaA.124.247 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 124 :ARYIARYPK 1dqaA 669 :SKLHEYFPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33551 # 2btoA.124.337 read from T0506.t04.many.frag # found chain 2btoA in template set Warning: unaligning (T0506)R129 (2btoA)K343 because G (3-10) conformation "forbidden" or filtered. T0506 124 :ARYIA 2btoA 338 :AAMRE T0506 130 :YPK 2btoA 344 :LPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33553 # 2f62A.124.151 read from T0506.t04.many.frag # found chain 2f62A in template set Warning: unaligning (T0506)K132 because last residue in template chain is (2f62A)S160 T0506 124 :ARYIARYP 2f62A 152 :KYFLANFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33554 # 1t82A.124.19 read from T0506.t04.many.frag # found chain 1t82A in training set T0506 124 :ARYIARYPK 1t82A 10 :QTWHSTIPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33555 # 1io0A.124.28 read from T0506.t04.many.frag # found chain 1io0A in training set Warning: unaligning (T0506)R129 (1io0A)N193 because L (left) conformation "forbidden" or filtered. T0506 124 :ARYIA 1io0A 188 :KRIQN T0506 130 :YPK 1io0A 194 :DPD Number of specific fragments extracted= 2 number of extra gaps= 1 total=33557 # 2fcjA.125.68 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 125 :RYIARYPKA 2fcjA 69 :QFRRMFPEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33558 # 1t4bA.125.293 read from T0506.t04.many.frag # found chain 1t4bA in training set T0506 125 :RYIARYPKA 1t4bA 294 :LLAAHNPWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33559 # 1kg0C.125.45 read from T0506.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0506)A128 (1kg0C)E134 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K132 (1kg0C)C138 because L (left) conformation "forbidden" or filtered. T0506 125 :RYI 1kg0C 131 :ACA T0506 129 :RYP 1kg0C 135 :KYP T0506 133 :A 1kg0C 139 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=33562 # 1uj8A.125.24 read from T0506.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0506)Y130 (1uj8A)Y30 because D (zeta) conformation "forbidden" or filtered. T0506 125 :RYIAR 1uj8A 25 :ALYDA T0506 131 :PKA 1uj8A 31 :PDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33564 # 1h6fA.125.173 read from T0506.t04.many.frag # found chain 1h6fA in training set T0506 125 :RYIARYPKA 1h6fA 272 :LKIDNNPFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33565 # 1xhnA.125.133 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 125 :RYIARYPKA 1xhnA 134 :SLFIRHPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33566 # 1g66A.125.27 read from T0506.t04.many.frag # found chain 1g66A in training set T0506 125 :RYIARYPKA 1g66A 28 :GVLSAYPGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33567 # 1ei9A.125.29 read from T0506.t04.many.frag # found chain 1ei9A in template set Warning: unaligning (T0506)K132 (1ei9A)G64 because T (delta_L) conformation "forbidden" or filtered. T0506 125 :RYIARYP 1ei9A 57 :MVEKKIP T0506 133 :A 1ei9A 65 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=33569 # 1y1pA.125.53 read from T0506.t04.many.frag # found chain 1y1pA in template set Warning: unaligning (T0506)K132 (1y1pA)G62 because L (left) conformation "forbidden" or filtered. T0506 125 :RYIARYP 1y1pA 55 :RWDAKYP T0506 133 :A 1y1pA 63 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=33571 # 1wn5A.125.93 read from T0506.t04.many.frag # found chain 1wn5A in template set T0506 125 :RYIARYPKA 1wn5A 94 :VLLDLHPGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33572 # 2bbrA.125.117 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 125 :RYIARYPKA 2bbrA 118 :FACNLNPSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33573 # 2f5uA.125.51 read from T0506.t04.many.frag # found chain 2f5uA in template set T0506 125 :RYIARYPKA 2f5uA 185 :RTITDFPLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33574 # 1dqaA.125.248 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 125 :RYIARYPKA 1dqaA 670 :KLHEYFPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33575 # 1jb7B.125.69 read from T0506.t04.many.frag # found chain 1jb7B in template set T0506 125 :RYIARYPKA 1jb7B 70 :EFHAKFPNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33576 # 1floA.125.90 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)Y130 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 Warning: unaligning (T0506)P131 because of BadResidue code BAD_PEPTIDE at template residue (1floA)P98 Warning: unaligning (T0506)K132 (1floA)A99 because G (3-10) conformation "forbidden" or filtered. T0506 125 :RYIAR 1floA 92 :SLKKL T0506 133 :A 1floA 100 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=33578 # 1vl7A.125.120 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)Y130 (1vl7A)F114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P131 (1vl7A)G115 because S (epsilon) conformation "forbidden" or filtered. T0506 125 :RYIAR 1vl7A 109 :QFQER T0506 132 :KA 1vl7A 116 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33580 # 1kgdA.125.23 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 125 :RYIARYPKA 1kgdA 753 :TLITKHPDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33581 # 1ysrA.125.19 read from T0506.t04.many.frag # found chain 1ysrA in template set T0506 125 :RYIARYPKA 1ysrA 316 :DAARIYPDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33582 # 1w1hA.125.35 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 125 :RYIARYPKA 1w1hA 441 :KQAGGNPWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33583 # 1no1A.125.11 read from T0506.t04.many.frag # found chain 1no1A in template set T0506 125 :RYIARYPKA 1no1A 12 :AVSEFYPGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33584 # 1jw9B.125.92 read from T0506.t04.many.frag # found chain 1jw9B in training set T0506 125 :RYIARYPKA 1jw9B 93 :ALTRINPHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33585 1ylqA expands to /projects/compbio/data/pdb/1ylq.pdb.gz 1ylqA:# 1ylqA.125.9 read from T0506.t04.many.frag # adding 1ylqA to template set # found chain 1ylqA in template set T0506 125 :RYIARYPKA 1ylqA 7 :ITKKDVQDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33586 # 1ro7A.125.93 read from T0506.t04.many.frag # found chain 1ro7A in training set T0506 125 :RYIARYPKA 1ro7A 94 :TFYDYFPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33587 # 1ew6A.125.22 read from T0506.t04.many.frag # found chain 1ew6A in training set T0506 125 :RYIARYPKA 1ew6A 23 :AFLNKYPDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33588 # 1oruA.125.137 read from T0506.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0506)K132 (1oruA)D142 because G (3-10) conformation "forbidden" or filtered. T0506 125 :RYIARYP 1oruA 135 :VIQSYYP T0506 133 :A 1oruA 143 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=33590 # 1zx1A.125.206 read from T0506.t04.many.frag # found chain 1zx1A in template set T0506 125 :RYIARYPKA 1zx1A 206 :AWSQRLQTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33591 # 1rjdA.125.217 read from T0506.t04.many.frag # found chain 1rjdA in training set T0506 125 :RYIARYPKA 1rjdA 218 :TIMSKFSHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33592 # 1j5sA.125.137 read from T0506.t04.many.frag # found chain 1j5sA in template set T0506 125 :RYIARYPKA 1j5sA 126 :ETKKKLPEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33593 # 1kv7A.125.337 read from T0506.t04.many.frag # found chain 1kv7A in training set Warning: unaligning (T0506)Y130 (1kv7A)Y371 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P131 (1kv7A)G372 because S (epsilon) conformation "forbidden" or filtered. T0506 125 :RYIAR 1kv7A 366 :MLMEK T0506 132 :KA 1kv7A 373 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33595 # 1kr7A.125.13 read from T0506.t04.many.frag # found chain 1kr7A in training set T0506 125 :RYIARYPKA 1kr7A 13 :ELFKAHPEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33596 # 1xhnA.126.134 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 126 :YIARYPKAK 1xhnA 135 :LFIRHPEMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33597 # 2fcjA.126.69 read from T0506.t04.many.frag # found chain 2fcjA in template set Warning: unaligning (T0506)K134 (2fcjA)E78 because P (beta_P) conformation "forbidden" or filtered. T0506 126 :YIARYPKA 2fcjA 70 :FRRMFPEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33598 # 2f5uA.126.52 read from T0506.t04.many.frag # found chain 2f5uA in template set T0506 126 :YIARYPKAK 2f5uA 186 :TITDFPLTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33599 # 1h6fA.126.174 read from T0506.t04.many.frag # found chain 1h6fA in training set T0506 126 :YIARYPKAK 1h6fA 273 :KIDNNPFAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33600 # 1kg0C.126.46 read from T0506.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0506)K132 (1kg0C)C138 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K134 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. T0506 126 :YIARYP 1kg0C 132 :CAEKYP T0506 133 :A 1kg0C 139 :T Number of specific fragments extracted= 2 number of extra gaps= 2 total=33602 # 1t4bA.126.294 read from T0506.t04.many.frag # found chain 1t4bA in training set T0506 126 :YIARYPKAK 1t4bA 295 :LAAHNPWAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33603 # 1ew6A.126.23 read from T0506.t04.many.frag # found chain 1ew6A in training set T0506 126 :YIARYPKAK 1ew6A 24 :FLNKYPDER Number of specific fragments extracted= 1 number of extra gaps= 0 total=33604 # 1g66A.126.28 read from T0506.t04.many.frag # found chain 1g66A in training set T0506 126 :YIARYPKAK 1g66A 29 :VLSAYPGST Number of specific fragments extracted= 1 number of extra gaps= 0 total=33605 # 2bbrA.126.118 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 126 :YIARYPKAK 2bbrA 119 :ACNLNPSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33606 # 1kgdA.126.24 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 126 :YIARYPKAK 1kgdA 754 :LITKHPDRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33607 # 1ysrA.126.20 read from T0506.t04.many.frag # found chain 1ysrA in template set T0506 126 :YIARYPKAK 1ysrA 317 :AARIYPDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33608 # 1jb7B.126.70 read from T0506.t04.many.frag # found chain 1jb7B in template set T0506 126 :YIARYPKAK 1jb7B 71 :FHAKFPNVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33609 # 1ei9A.126.30 read from T0506.t04.many.frag # found chain 1ei9A in template set Warning: unaligning (T0506)R129 (1ei9A)K61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K132 (1ei9A)G64 because T (delta_L) conformation "forbidden" or filtered. T0506 126 :YIA 1ei9A 58 :VEK T0506 130 :YP 1ei9A 62 :IP T0506 133 :AK 1ei9A 65 :IH Number of specific fragments extracted= 3 number of extra gaps= 2 total=33612 # 1dqaA.126.249 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 126 :YIARYPKAK 1dqaA 671 :LHEYFPEMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33613 # 1y1pA.126.54 read from T0506.t04.many.frag # found chain 1y1pA in template set T0506 126 :YIARYPKAK 1y1pA 56 :WDAKYPGRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33614 # 1uj8A.126.25 read from T0506.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0506)K132 (1uj8A)D32 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K134 (1uj8A)D34 because P (beta_P) conformation "forbidden" or filtered. T0506 126 :YIARYP 1uj8A 26 :LYDAYP T0506 133 :A 1uj8A 33 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=33616 # 1ro7A.126.94 read from T0506.t04.many.frag # found chain 1ro7A in training set T0506 126 :YIARYPKAK 1ro7A 95 :FYDYFPDAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33617 # 1kr7A.126.14 read from T0506.t04.many.frag # found chain 1kr7A in training set T0506 126 :YIARYPKAK 1kr7A 14 :LFKAHPEYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33618 # 1j5sA.126.138 read from T0506.t04.many.frag # found chain 1j5sA in template set T0506 126 :YIARYPKAK 1j5sA 127 :TKKKLPEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33619 # 1mun.126.54 read from T0506.t04.many.frag # found chain 1mun in training set T0506 126 :YIARYPKAK 1mun 55 :FMARFPTVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33620 # 1rqwA.126.172 read from T0506.t04.many.frag # found chain 1rqwA in training set T0506 126 :YIARYPKAK 1rqwA 173 :FKRLCPDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33621 # 1chmA.126.134 read from T0506.t04.many.frag # found chain 1chmA in template set T0506 126 :YIARYPKAK 1chmA 136 :LAARYPDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33622 # 1uuyA.126.111 read from T0506.t04.many.frag # found chain 1uuyA in training set T0506 126 :YIARYPKAK 1uuyA 112 :SLKITPFAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33623 # 1wn5A.126.94 read from T0506.t04.many.frag # found chain 1wn5A in template set T0506 126 :YIARYPKAK 1wn5A 95 :LLDLHPGIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33624 # 1floA.126.91 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)Y130 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 Warning: unaligning (T0506)P131 because of BadResidue code BAD_PEPTIDE at template residue (1floA)P98 T0506 126 :YIAR 1floA 93 :LKKL T0506 132 :KAK 1floA 99 :AWE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33626 # 1kjnA.126.50 read from T0506.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0506)A133 (1kjnA)G58 because L (left) conformation "forbidden" or filtered. T0506 126 :YIARYPK 1kjnA 51 :VQVADPE T0506 134 :K 1kjnA 59 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=33628 # 1gvhA.126.31 read from T0506.t04.many.frag # found chain 1gvhA in template set T0506 126 :YIARYPKAK 1gvhA 32 :MFTHNPELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33629 # 1oruA.126.138 read from T0506.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0506)R129 (1oruA)Y139 because G (3-10) conformation "forbidden" or filtered. T0506 126 :YIA 1oruA 136 :IQS T0506 130 :YPKAK 1oruA 140 :YPDQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33631 # 1h70A.126.96 read from T0506.t04.many.frag # found chain 1h70A in training set Warning: unaligning (T0506)K132 (1h70A)G102 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A133 (1h70A)K103 because G (3-10) conformation "forbidden" or filtered. T0506 126 :YIARYP 1h70A 96 :VQRFYP T0506 134 :K 1h70A 104 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=33633 # 1ylqA.126.10 read from T0506.t04.many.frag # found chain 1ylqA in template set T0506 126 :YIARYPKAK 1ylqA 8 :TKKDVQDAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33634 # 1xhnA.127.135 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 127 :IARYPKAKL 1xhnA 136 :FIRHPEMKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33635 # 2f5uA.127.53 read from T0506.t04.many.frag # found chain 2f5uA in template set T0506 127 :IARYPKAKL 2f5uA 187 :ITDFPLTTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33636 # 1gvhA.127.32 read from T0506.t04.many.frag # found chain 1gvhA in template set T0506 127 :IARYPKAKL 1gvhA 33 :FTHNPELKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33637 # 2fcjA.127.70 read from T0506.t04.many.frag # found chain 2fcjA in template set T0506 127 :IARYPKAKL 2fcjA 71 :RRMFPEAEH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33638 # 1h6fA.127.175 read from T0506.t04.many.frag # found chain 1h6fA in training set T0506 127 :IARYPKAKL 1h6fA 274 :IDNNPFAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33639 # 1rqwA.127.173 read from T0506.t04.many.frag # found chain 1rqwA in training set Warning: unaligning (T0506)K134 (1rqwA)F181 because P (beta_P) conformation "forbidden" or filtered. T0506 127 :IARYPKA 1rqwA 174 :KRLCPDA T0506 135 :L 1rqwA 182 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=33641 # 1rv9A.127.183 read from T0506.t04.many.frag # found chain 1rv9A in training set T0506 127 :IARYPKAKL 1rv9A 184 :CTPMPEAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33642 # 1ew6A.127.24 read from T0506.t04.many.frag # found chain 1ew6A in training set Warning: unaligning (T0506)Y130 (1ew6A)Y28 because D (zeta) conformation "forbidden" or filtered. T0506 127 :IAR 1ew6A 25 :LNK T0506 131 :PKAKL 1ew6A 29 :PDERR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33644 # 2bbrA.127.119 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 127 :IARYPKAKL 2bbrA 120 :CNLNPSLST Number of specific fragments extracted= 1 number of extra gaps= 0 total=33645 # 1dqaA.127.250 read from T0506.t04.many.frag # found chain 1dqaA in template set Warning: unaligning (T0506)A133 (1dqaA)M678 because P (beta_P) conformation "forbidden" or filtered. T0506 127 :IARYPK 1dqaA 672 :HEYFPE T0506 134 :KL 1dqaA 679 :QI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33647 # 1ysrA.127.21 read from T0506.t04.many.frag # found chain 1ysrA in template set Warning: unaligning (T0506)K132 (1ysrA)D323 because T (delta_L) conformation "forbidden" or filtered. T0506 127 :IARYP 1ysrA 318 :ARIYP T0506 133 :AKL 1ysrA 324 :LDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33649 # 1wn5A.127.95 read from T0506.t04.many.frag # found chain 1wn5A in template set T0506 127 :IARYPKAKL 1wn5A 96 :LDLHPGIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33650 # 1kr7A.127.15 read from T0506.t04.many.frag # found chain 1kr7A in training set T0506 127 :IARYPKAKL 1kr7A 15 :FKAHPEYQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33651 # 1kg0C.127.47 read from T0506.t04.many.frag # found chain 1kg0C in template set T0506 127 :IARYPKAKL 1kg0C 133 :AEKYPCTYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33652 # 1ro7A.127.95 read from T0506.t04.many.frag # found chain 1ro7A in training set T0506 127 :IARYPKAKL 1ro7A 96 :YDYFPDAHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33653 # 1g66A.127.29 read from T0506.t04.many.frag # found chain 1g66A in training set Warning: unaligning (T0506)K132 (1g66A)G35 because T (delta_L) conformation "forbidden" or filtered. T0506 127 :IARYP 1g66A 30 :LSAYP T0506 133 :AKL 1g66A 36 :STA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33655 # 1t4bA.127.295 read from T0506.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0506)Y130 (1t4bA)N299 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A133 (1t4bA)A302 because N (gamma') conformation "forbidden" or filtered. T0506 127 :IAR 1t4bA 296 :AAH T0506 131 :PK 1t4bA 300 :PW T0506 134 :KL 1t4bA 303 :KV Number of specific fragments extracted= 3 number of extra gaps= 2 total=33658 # 1jb7B.127.71 read from T0506.t04.many.frag # found chain 1jb7B in template set Warning: unaligning (T0506)K134 (1jb7B)N79 because P (beta_P) conformation "forbidden" or filtered. T0506 127 :IARYPKA 1jb7B 72 :HAKFPNV T0506 135 :L 1jb7B 80 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=33660 # 1chmA.127.135 read from T0506.t04.many.frag # found chain 1chmA in template set T0506 127 :IARYPKAKL 1chmA 137 :AARYPDAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33661 # 1ei9A.127.31 read from T0506.t04.many.frag # found chain 1ei9A in template set T0506 127 :IARYPKAKL 1ei9A 59 :EKKIPGIHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33662 # 1kgdA.127.25 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 127 :IARYPKAKL 1kgdA 755 :ITKHPDRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33663 # 1uuyA.127.112 read from T0506.t04.many.frag # found chain 1uuyA in training set T0506 127 :IARYPKAKL 1uuyA 113 :LKITPFAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=33664 # 1floA.127.92 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)Y130 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 Warning: unaligning (T0506)P131 because of BadResidue code BAD_PEPTIDE at template residue (1floA)P98 T0506 127 :IAR 1floA 94 :KKL T0506 132 :KAKL 1floA 99 :AWEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33666 # 1mun.127.55 read from T0506.t04.many.frag # found chain 1mun in training set T0506 127 :IARYPKAKL 1mun 56 :MARFPTVTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33667 # 4eugA.127.96 read from T0506.t04.many.frag # found chain 4eugA in training set T0506 127 :IARYPKAKL 4eugA 97 :ENTIPGFTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33668 # 1dp7P.127.47 read from T0506.t04.many.frag # found chain 1dp7P in training set T0506 127 :IARYPKAKL 1dp7P 48 :RSVFMGLRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33669 1bco expands to /projects/compbio/data/pdb/1bco.pdb.gz 1bco:Warning: there is no chain 1bco will retry with 1bcoA # 1bco.127.156 read from T0506.t04.many.frag # adding 1bco to template set # found chain 1bco in template set Warning: unaligning (T0506)A133 (1bco)L410 because G (3-10) conformation "forbidden" or filtered. T0506 127 :IARYPK 1bco 404 :VDKHPA T0506 134 :KL 1bco 411 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=33671 # 1ryiA.127.295 read from T0506.t04.many.frag # found chain 1ryiA in training set T0506 127 :IARYPKAKL 1ryiA 283 :KTMLPAIQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33672 # 1tjyA.127.154 read from T0506.t04.many.frag # found chain 1tjyA in training set Warning: unaligning (T0506)K134 (1tjyA)E186 because E (beta_S) conformation "forbidden" or filtered. T0506 127 :IARYPKA 1tjyA 179 :SQEHPGW T0506 135 :L 1tjyA 187 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=33674 # 1esc.127.172 read from T0506.t04.many.frag # found chain 1esc in template set Warning: unaligning (T0506)A133 (1esc)A179 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K134 (1esc)K180 because P (beta_P) conformation "forbidden" or filtered. T0506 127 :IARYPK 1esc 173 :GYFAPD T0506 135 :L 1esc 181 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=33676 # 1xhnA.128.136 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 128 :ARYPKAKLY 1xhnA 137 :IRHPEMKTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33677 # 1gvhA.128.33 read from T0506.t04.many.frag # found chain 1gvhA in template set T0506 128 :ARYPKAKLY 1gvhA 34 :THNPELKEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33678 # 1rv9A.128.184 read from T0506.t04.many.frag # found chain 1rv9A in training set T0506 128 :ARYPKAKLY 1rv9A 185 :TPMPEAATA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33679 # 2f5uA.128.54 read from T0506.t04.many.frag # found chain 2f5uA in template set T0506 128 :ARYPKAKLY 2f5uA 188 :TDFPLTTRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33680 # 1h6fA.128.176 read from T0506.t04.many.frag # found chain 1h6fA in training set T0506 128 :ARYPKAKLY 1h6fA 275 :DNNPFAKGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33681 # 2bbrA.128.120 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 128 :ARYPKAKLY 2bbrA 121 :NLNPSLSTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33682 # 1uuyA.128.113 read from T0506.t04.many.frag # found chain 1uuyA in training set T0506 128 :ARYPKAKLY 1uuyA 114 :KITPFAMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33683 # 1rqwA.128.174 read from T0506.t04.many.frag # found chain 1rqwA in training set T0506 128 :ARYPKAKLY 1rqwA 175 :RLCPDAFSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33684 # 1kr7A.128.16 read from T0506.t04.many.frag # found chain 1kr7A in training set T0506 128 :ARYPKAKLY 1kr7A 16 :KAHPEYQNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33685 # 2fcjA.128.71 read from T0506.t04.many.frag # found chain 2fcjA in template set Warning: unaligning (T0506)A133 (2fcjA)A77 because P (beta_P) conformation "forbidden" or filtered. T0506 128 :ARYPK 2fcjA 72 :RMFPE T0506 134 :KLY 2fcjA 78 :EHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33687 # 1dqaA.128.251 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 128 :ARYPKAKLY 1dqaA 673 :EYFPEMQIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33688 # 1wn5A.128.96 read from T0506.t04.many.frag # found chain 1wn5A in template set Warning: unaligning (T0506)K132 (1wn5A)G101 because G (3-10) conformation "forbidden" or filtered. T0506 128 :ARYP 1wn5A 97 :DLHP T0506 133 :AKLY 1wn5A 102 :IKAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33690 # 1ew6A.128.25 read from T0506.t04.many.frag # found chain 1ew6A in training set T0506 128 :ARYPKAKLY 1ew6A 26 :NKYPDERRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33691 # 1bco.128.157 read from T0506.t04.many.frag # found chain 1bco in template set T0506 128 :ARYPKAKLY 1bco 405 :DKHPALAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33692 # 1t4bA.128.296 read from T0506.t04.many.frag # found chain 1t4bA in training set T0506 128 :ARYPKAKLY 1t4bA 297 :AHNPWAKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33693 # 1ro7A.128.96 read from T0506.t04.many.frag # found chain 1ro7A in training set T0506 128 :ARYPKAKLY 1ro7A 97 :DYFPDAHLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33694 # 1ysrA.128.22 read from T0506.t04.many.frag # found chain 1ysrA in template set T0506 128 :ARYPKAKLY 1ysrA 319 :RIYPDLDVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33695 # 1kg0C.128.48 read from T0506.t04.many.frag # found chain 1kg0C in template set Warning: unaligning (T0506)K134 (1kg0C)Y140 because Y (epsilon') conformation "forbidden" or filtered. T0506 128 :ARYPKA 1kg0C 134 :EKYPCT T0506 135 :LY 1kg0C 141 :FY Number of specific fragments extracted= 2 number of extra gaps= 1 total=33697 # 1chmA.128.136 read from T0506.t04.many.frag # found chain 1chmA in template set T0506 128 :ARYPKAKLY 1chmA 138 :ARYPDAELV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33698 # 1floA.128.93 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)Y130 because of BadResidue code BAD_PEPTIDE in next template residue (1floA)P98 Warning: unaligning (T0506)P131 because of BadResidue code BAD_PEPTIDE at template residue (1floA)P98 T0506 128 :AR 1floA 95 :KL T0506 132 :KAKLY 1floA 99 :AWEFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33700 # 1ryiA.128.296 read from T0506.t04.many.frag # found chain 1ryiA in training set T0506 128 :ARYPKAKLY 1ryiA 284 :TMLPAIQNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33701 # 1mun.128.56 read from T0506.t04.many.frag # found chain 1mun in training set T0506 128 :ARYPKAKLY 1mun 57 :ARFPTVTDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33702 # 1tjyA.128.155 read from T0506.t04.many.frag # found chain 1tjyA in training set T0506 128 :ARYPKAKLY 1tjyA 180 :QEHPGWEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33703 # 1xmtA.128.84 read from T0506.t04.many.frag # found chain 1xmtA in training set T0506 128 :ARYPKAKLY 1xmtA 85 :PRNPSWKPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33704 # 1dp7P.128.48 read from T0506.t04.many.frag # found chain 1dp7P in training set T0506 128 :ARYPKAKLY 1dp7P 49 :SVFMGLRTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33705 # 1tffA.128.19 read from T0506.t04.many.frag # found chain 1tffA in template set Warning: unaligning (T0506)Y130 (1tffA)H22 because L (left) conformation "forbidden" or filtered. T0506 128 :AR 1tffA 20 :RD T0506 131 :PKAKLY 1tffA 23 :PENRIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=33707 # 2auwA.128.40 read from T0506.t04.many.frag # found chain 2auwA in template set T0506 128 :ARYPKAKLY 2auwA 39 :RKIPDLAPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33708 # 1ei9A.128.32 read from T0506.t04.many.frag # found chain 1ei9A in template set Warning: unaligning (T0506)K132 (1ei9A)G64 because T (delta_L) conformation "forbidden" or filtered. T0506 128 :ARYP 1ei9A 60 :KKIP T0506 133 :AKLY 1ei9A 65 :IHVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33710 2bykA expands to /projects/compbio/data/pdb/2byk.pdb.gz 2bykA:# 2bykA.128.83 read from T0506.t04.many.frag # adding 2bykA to template set # found chain 2bykA in template set Warning: unaligning (T0506)Y136 (2bykA)L92 because G (3-10) conformation "forbidden" or filtered. T0506 128 :ARYPKAKL 2bykA 84 :NKNKNLEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=33711 # 1qd6C.128.24 read from T0506.t04.many.frag # found chain 1qd6C in template set T0506 128 :ARYPKAKLY 1qd6C 54 :ASYDWAENA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33712 # 1xhnA.129.137 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 129 :RYPKAKLYL 1xhnA 138 :RHPEMKTWP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33713 # 1gvhA.129.34 read from T0506.t04.many.frag # found chain 1gvhA in template set T0506 129 :RYPKAKLYL 1gvhA 35 :HNPELKEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33714 # 1rv9A.129.185 read from T0506.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0506)Y136 (1rv9A)A193 because G (3-10) conformation "forbidden" or filtered. T0506 129 :RYPKAKL 1rv9A 186 :PMPEAAT T0506 137 :L 1rv9A 194 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=33716 # 1uuyA.129.114 read from T0506.t04.many.frag # found chain 1uuyA in training set T0506 129 :RYPKAKLYL 1uuyA 115 :ITPFAMLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33717 # 2f5uA.129.55 read from T0506.t04.many.frag # found chain 2f5uA in template set T0506 129 :RYPKAKLYL 2f5uA 189 :DFPLTTRSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33718 # 1h6fA.129.177 read from T0506.t04.many.frag # found chain 1h6fA in training set T0506 129 :RYPKAKLYL 1h6fA 276 :NNPFAKGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33719 # 1kr7A.129.17 read from T0506.t04.many.frag # found chain 1kr7A in training set T0506 129 :RYPKAKLYL 1kr7A 17 :AHPEYQNKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33720 # 2bbrA.129.121 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 129 :RYPKAKLYL 2bbrA 122 :LNPSLSTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33721 # 1rqwA.129.175 read from T0506.t04.many.frag # found chain 1rqwA in training set Warning: unaligning (T0506)K134 (1rqwA)F181 because P (beta_P) conformation "forbidden" or filtered. T0506 129 :RYPKA 1rqwA 176 :LCPDA T0506 135 :LYL 1rqwA 182 :SYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33723 # 1ew6A.129.26 read from T0506.t04.many.frag # found chain 1ew6A in training set T0506 129 :RYPKAKLYL 1ew6A 27 :KYPDERRYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33724 # 1qd6C.129.25 read from T0506.t04.many.frag # found chain 1qd6C in template set T0506 129 :RYPKAKLYL 1qd6C 55 :SYDWAENAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33725 # 1xmtA.129.85 read from T0506.t04.many.frag # found chain 1xmtA in training set T0506 129 :RYPKAKLYL 1xmtA 86 :RNPSWKPLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33726 # 1wn5A.129.97 read from T0506.t04.many.frag # found chain 1wn5A in template set Warning: unaligning (T0506)A133 (1wn5A)I102 because P (beta_P) conformation "forbidden" or filtered. T0506 129 :RYPK 1wn5A 98 :LHPG T0506 134 :KLYL 1wn5A 103 :KAIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33728 # 1bco.129.158 read from T0506.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0506)R129 (1bco)K406 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A133 (1bco)L410 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YPK 1bco 407 :HPA T0506 134 :KLYL 1bco 411 :AGAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=33730 # 2bk9A.129.33 read from T0506.t04.many.frag # found chain 2bk9A in template set T0506 129 :RYPKAKLYL 2bk9A 34 :RFPSNLEKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33731 # 1t4bA.129.297 read from T0506.t04.many.frag # found chain 1t4bA in training set Warning: unaligning (T0506)K134 (1t4bA)K303 because P (beta_P) conformation "forbidden" or filtered. T0506 129 :RYPKA 1t4bA 298 :HNPWA T0506 135 :LYL 1t4bA 304 :VVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33733 # 2auwA.129.41 read from T0506.t04.many.frag # found chain 2auwA in template set Warning: unaligning (T0506)A133 (2auwA)L44 because G (3-10) conformation "forbidden" or filtered. T0506 129 :RYPK 2auwA 40 :KIPD T0506 134 :KLYL 2auwA 45 :APIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33735 # 1j77A.129.67 read from T0506.t04.many.frag # found chain 1j77A in training set Warning: unaligning (T0506)K132 (1j77A)E71 because L (left) conformation "forbidden" or filtered. T0506 129 :RYP 1j77A 68 :AIP T0506 133 :AKLYL 1j77A 72 :LEYMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33737 # 1n93X.129.291 read from T0506.t04.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)R129 (1n93X)R287 because L (left) conformation "forbidden" or filtered. T0506 130 :YPKAKLYL 1n93X 288 :HPDAIKLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33738 # 1dqaA.129.252 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 129 :RYPKAKLYL 1dqaA 674 :YFPEMQILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33739 # 1ryiA.129.297 read from T0506.t04.many.frag # found chain 1ryiA in training set T0506 129 :RYPKAKLYL 1ryiA 285 :MLPAIQNMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33740 # 1o65A.129.82 read from T0506.t04.many.frag # found chain 1o65A in template set T0506 129 :RYPKAKLYL 1o65A 81 :EFPEQAELF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33741 # 1o12A.129.166 read from T0506.t04.many.frag # found chain 1o12A in template set T0506 129 :RYPKAKLYL 1o12A 155 :EIESSELLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33742 # 2fcjA.129.72 read from T0506.t04.many.frag # found chain 2fcjA in template set Warning: unaligning (T0506)L137 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fcjA)I82 T0506 129 :RYPKAKLY 2fcjA 73 :MFPEAEHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33743 # 2a9sA.129.44 read from T0506.t04.many.frag # found chain 2a9sA in template set Warning: unaligning (T0506)K132 (2a9sA)G46 because T (delta_L) conformation "forbidden" or filtered. T0506 129 :RYP 2a9sA 43 :EIA T0506 133 :AKLYL 2a9sA 47 :SSAVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33745 # 1tffA.129.20 read from T0506.t04.many.frag # found chain 1tffA in template set Warning: unaligning (T0506)Y130 (1tffA)H22 because L (left) conformation "forbidden" or filtered. T0506 129 :R 1tffA 21 :D T0506 131 :PKAKLYL 1tffA 23 :PENRIYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33747 # 1ash.129.36 read from T0506.t04.many.frag # found chain 1ash in template set Warning: unaligning (T0506)Y130 (1ash)Y37 because D (zeta) conformation "forbidden" or filtered. T0506 129 :R 1ash 36 :N T0506 131 :PKAKLYL 1ash 38 :PPLRKYF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33749 # 1ro7A.129.97 read from T0506.t04.many.frag # found chain 1ro7A in training set T0506 129 :RYPKAKLYL 1ro7A 98 :YFPDAHLGY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33750 # 1n7zA.129.256 read from T0506.t04.many.frag # found chain 1n7zA in template set Warning: unaligning (T0506)L137 (1n7zA)G265 because T (delta_L) conformation "forbidden" or filtered. T0506 129 :RYPKAKLY 1n7zA 257 :YFPEAALP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33751 1rlr expands to /projects/compbio/data/pdb/1rlr.pdb.gz 1rlr:Warning: there is no chain 1rlr will retry with 1rlrA # 1rlr.129.582 read from T0506.t04.many.frag # adding 1rlr to template set # found chain 1rlr in template set T0506 129 :RYPKAKLYL 1rlr 583 :YKKDLDTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33752 # 1xhnA.130.138 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 130 :YPKAKLYLS 1xhnA 139 :HPEMKTWPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33753 # 1gvhA.130.35 read from T0506.t04.many.frag # found chain 1gvhA in template set T0506 130 :YPKAKLYLS 1gvhA 36 :NPELKEIFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33754 # 1uuyA.130.115 read from T0506.t04.many.frag # found chain 1uuyA in training set T0506 130 :YPKAKLYLS 1uuyA 116 :TPFAMLARS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33755 # 1rv9A.130.186 read from T0506.t04.many.frag # found chain 1rv9A in training set T0506 130 :YPKAKLYLS 1rv9A 187 :MPEAATAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33756 # 1qd6C.130.26 read from T0506.t04.many.frag # found chain 1qd6C in template set T0506 130 :YPKAKLYLS 1qd6C 56 :YDWAENARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33757 # 1o12A.130.167 read from T0506.t04.many.frag # found chain 1o12A in template set T0506 130 :YPKAKLYLS 1o12A 156 :IESSELLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33758 # 1h6fA.130.178 read from T0506.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0506)S138 because last residue in template chain is (1h6fA)D285 T0506 130 :YPKAKLYL 1h6fA 277 :NPFAKGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33759 # 2f5uA.130.56 read from T0506.t04.many.frag # found chain 2f5uA in template set T0506 130 :YPKAKLYLS 2f5uA 190 :FPLTTRSAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33760 # 1g5tA.130.108 read from T0506.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)S138 (1g5tA)A117 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YPKAKLYL 1g5tA 109 :WQHGKRML Number of specific fragments extracted= 1 number of extra gaps= 1 total=33761 # 1xmtA.130.86 read from T0506.t04.many.frag # found chain 1xmtA in training set T0506 130 :YPKAKLYLS 1xmtA 87 :NPSWKPLIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33762 # 2bbrA.130.122 read from T0506.t04.many.frag # found chain 2bbrA in template set T0506 130 :YPKAKLYLS 2bbrA 123 :NPSLSTALS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33763 # 1rlr.130.583 read from T0506.t04.many.frag # found chain 1rlr in template set T0506 130 :YPKAKLYLS 1rlr 584 :KKDLDTIAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33764 # 1ryiA.130.298 read from T0506.t04.many.frag # found chain 1ryiA in training set T0506 130 :YPKAKLYLS 1ryiA 286 :LPAIQNMKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33765 # 1ew6A.130.27 read from T0506.t04.many.frag # found chain 1ew6A in training set T0506 130 :YPKAKLYLS 1ew6A 28 :YPDERRYFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33766 # 1bco.130.159 read from T0506.t04.many.frag # found chain 1bco in template set Warning: unaligning (T0506)A133 (1bco)L410 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)Y136 (1bco)A413 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YPK 1bco 407 :HPA T0506 134 :KL 1bco 411 :AG T0506 137 :LS 1bco 414 :YT Number of specific fragments extracted= 3 number of extra gaps= 2 total=33769 # 1j77A.130.68 read from T0506.t04.many.frag # found chain 1j77A in training set Warning: unaligning (T0506)K132 (1j77A)E71 because L (left) conformation "forbidden" or filtered. T0506 130 :YP 1j77A 69 :IP T0506 133 :AKLYLS 1j77A 72 :LEYMAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33771 # 1rqwA.130.176 read from T0506.t04.many.frag # found chain 1rqwA in training set T0506 130 :YPKAKLYLS 1rqwA 177 :CPDAFSYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33772 # 1kr7A.130.18 read from T0506.t04.many.frag # found chain 1kr7A in training set T0506 130 :YPKAKLYLS 1kr7A 18 :HPEYQNKFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33773 # 2bk9A.130.34 read from T0506.t04.many.frag # found chain 2bk9A in template set T0506 130 :YPKAKLYLS 2bk9A 35 :FPSNLEKFP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33774 1gjwA expands to /projects/compbio/data/pdb/1gjw.pdb.gz 1gjwA:# 1gjwA.130.517 read from T0506.t04.many.frag # adding 1gjwA to template set # found chain 1gjwA in template set T0506 130 :YPKAKLYLS 1gjwA 518 :DPNLRKVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33775 # 1r0pA.130.272 read from T0506.t04.many.frag # found chain 1r0pA in training set T0506 130 :YPKAKLYLS 1r0pA 1321 :HPKAEMRPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33776 # 2a9sA.130.45 read from T0506.t04.many.frag # found chain 2a9sA in template set T0506 130 :YPKAKLYLS 2a9sA 44 :IAGSSAVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33777 1lrv expands to /projects/compbio/data/pdb/1lrv.pdb.gz 1lrv:Warning: there is no chain 1lrv will retry with 1lrvA # 1lrv.130.51 read from T0506.t04.many.frag # adding 1lrv to template set # found chain 1lrv in template set Warning: unaligning (T0506)Y136 (1lrv)Y58 because G (3-10) conformation "forbidden" or filtered. T0506 130 :YPKAKL 1lrv 52 :PHLAVQ T0506 137 :LS 1lrv 59 :LA Number of specific fragments extracted= 2 number of extra gaps= 1 total=33779 # 2auwA.130.42 read from T0506.t04.many.frag # found chain 2auwA in template set T0506 130 :YPKAKLYLS 2auwA 41 :IPDLAPILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33780 # 1e6iA.130.27 read from T0506.t04.many.frag # found chain 1e6iA in template set T0506 130 :YPKAKLYLS 1e6iA 346 :HAAAWPFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33781 # 1ks8A.130.198 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 130 :YPKAKLYLS 1ks8A 199 :ITDARNFYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33782 # 1txkA.130.411 read from T0506.t04.many.frag # found chain 1txkA in template set T0506 130 :YPKAKLYLS 1txkA 433 :GAEMKKLPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33783 # 1n93X.130.292 read from T0506.t04.many.frag # found chain 1n93X in training set T0506 130 :YPKAKLYLS 1n93X 288 :HPDAIKLAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33784 # 2bzvA.130.100 read from T0506.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0506)K132 (2bzvA)N317 because L (left) conformation "forbidden" or filtered. T0506 130 :YP 2bzvA 315 :AS T0506 133 :AKLYLS 2bzvA 318 :ALTFMP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33786 # 1w6sA.130.561 read from T0506.t04.many.frag # found chain 1w6sA in training set Warning: unaligning (T0506)L137 (1w6sA)T569 because Y (epsilon') conformation "forbidden" or filtered. T0506 130 :YPKAKLY 1w6sA 562 :FKKLANY T0506 138 :S 1w6sA 570 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=33788 # 1xhnA.131.139 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 131 :PKAKLYLSL 1xhnA 140 :PEMKTWPSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33789 # 1gvhA.131.36 read from T0506.t04.many.frag # found chain 1gvhA in template set T0506 131 :PKAKLYLSL 1gvhA 37 :PELKEIFNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=33790 # 1uuyA.131.116 read from T0506.t04.many.frag # found chain 1uuyA in training set T0506 131 :PKAKLYLSL 1uuyA 117 :PFAMLARSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33791 # 1qd6C.131.27 read from T0506.t04.many.frag # found chain 1qd6C in template set T0506 131 :PKAKLYLSL 1qd6C 57 :DWAENARKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33792 # 1lrv.131.52 read from T0506.t04.many.frag # found chain 1lrv in template set T0506 131 :PKAKLYLSL 1lrv 53 :HLAVQYLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33793 # 1rv9A.131.187 read from T0506.t04.many.frag # found chain 1rv9A in training set T0506 131 :PKAKLYLSL 1rv9A 188 :PEAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33794 # 1rlr.131.584 read from T0506.t04.many.frag # found chain 1rlr in template set T0506 131 :PKAKLYLSL 1rlr 585 :KDLDTIANE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33795 # 1o12A.131.168 read from T0506.t04.many.frag # found chain 1o12A in template set T0506 131 :PKAKLYLSL 1o12A 157 :ESSELLLRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33796 # 1g5tA.131.109 read from T0506.t04.many.frag # found chain 1g5tA in training set T0506 131 :PKAKLYLSL 1g5tA 110 :QHGKRMLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33797 # 2arcA.131.95 read from T0506.t04.many.frag # found chain 2arcA in training set T0506 131 :PKAKLYLSL 2arcA 102 :AYWHEWLNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33798 # 1e6iA.131.28 read from T0506.t04.many.frag # found chain 1e6iA in template set Warning: unaligning (T0506)Y136 (1e6iA)F352 because G (3-10) conformation "forbidden" or filtered. T0506 131 :PKAKL 1e6iA 347 :AAAWP T0506 137 :LSL 1e6iA 353 :LQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33800 # 1lfpA.131.158 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)K132 (1lfpA)G160 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L135 (1lfpA)D163 because Y (epsilon') conformation "forbidden" or filtered. T0506 131 :P 1lfpA 159 :V T0506 133 :AK 1lfpA 161 :AE T0506 136 :YLSL 1lfpA 164 :VQPG Number of specific fragments extracted= 3 number of extra gaps= 2 total=33803 # 1gjwA.131.518 read from T0506.t04.many.frag # found chain 1gjwA in template set T0506 131 :PKAKLYLSL 1gjwA 519 :PNLRKVLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33804 # 1h6fA.131.179 read from T0506.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0506)S138 because last residue in template chain is (1h6fA)D285 T0506 131 :PKAKLYL 1h6fA 278 :PFAKGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33805 # 1ryiA.131.299 read from T0506.t04.many.frag # found chain 1ryiA in training set T0506 131 :PKAKLYLSL 1ryiA 287 :PAIQNMKVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33806 # 1rcqA.131.223 read from T0506.t04.many.frag # found chain 1rcqA in training set T0506 131 :PKAKLYLSL 1rcqA 224 :PLADRLRPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33807 # 1tqhA.131.175 read from T0506.t04.many.frag # found chain 1tqhA in training set Warning: unaligning (T0506)S138 (1tqhA)A183 because P (beta_P) conformation "forbidden" or filtered. T0506 131 :PKAKLYL 1tqhA 176 :DHLDLIY T0506 139 :L 1tqhA 184 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=33809 # 1xmtA.131.87 read from T0506.t04.many.frag # found chain 1xmtA in training set T0506 131 :PKAKLYLSL 1xmtA 88 :PSWKPLIHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33810 # 1q7eA.131.285 read from T0506.t04.many.frag # found chain 1q7eA in training set Warning: unaligning (T0506)P131 (1q7eA)I286 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A133 (1q7eA)K288 because D (zeta) conformation "forbidden" or filtered. T0506 132 :K 1q7eA 287 :G T0506 134 :KLYLSL 1q7eA 289 :PEWITD Number of specific fragments extracted= 2 number of extra gaps= 2 total=33812 # 1hp1A.131.466 read from T0506.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0506)P131 (1hp1A)T501 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K132 (1hp1A)G502 because T (delta_L) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1hp1A 503 :GDGYPRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=33813 # 2auwA.131.43 read from T0506.t04.many.frag # found chain 2auwA in template set T0506 131 :PKAKLYLSL 2auwA 42 :PDLAPILDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33814 # 1tr9A.131.292 read from T0506.t04.many.frag # found chain 1tr9A in training set T0506 131 :PKAKLYLSL 1tr9A 292 :PQAEALLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33815 # 1r0pA.131.273 read from T0506.t04.many.frag # found chain 1r0pA in training set T0506 131 :PKAKLYLSL 1r0pA 1322 :PKAEMRPSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33816 # 1ye8A.131.143 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 131 :PKAKLYLSL 1ye8A 144 :PLVKEIRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33817 # 2bzvA.131.101 read from T0506.t04.many.frag # found chain 2bzvA in template set Warning: unaligning (T0506)A133 (2bzvA)A318 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (2bzvA)P323 because P (beta_P) conformation "forbidden" or filtered. T0506 131 :PK 2bzvA 316 :SN T0506 134 :KLYL 2bzvA 319 :LTFM T0506 139 :L 2bzvA 324 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=33820 # 1j77A.131.69 read from T0506.t04.many.frag # found chain 1j77A in training set Warning: unaligning (T0506)K132 (1j77A)E71 because L (left) conformation "forbidden" or filtered. T0506 131 :P 1j77A 70 :P T0506 133 :AKLYLSL 1j77A 72 :LEYMARY Number of specific fragments extracted= 2 number of extra gaps= 1 total=33822 # 2f5uA.131.57 read from T0506.t04.many.frag # found chain 2f5uA in template set Warning: unaligning (T0506)Y136 (2f5uA)S196 because G (3-10) conformation "forbidden" or filtered. T0506 131 :PKAKL 2f5uA 191 :PLTTR T0506 137 :LSL 2f5uA 197 :ADF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33824 # 2b9eA.131.272 read from T0506.t04.many.frag # found chain 2b9eA in template set Warning: unaligning (T0506)K132 (2b9eA)G400 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (2b9eA)A407 because Y (epsilon') conformation "forbidden" or filtered. T0506 131 :P 2b9eA 399 :P T0506 133 :AKLYLS 2b9eA 401 :AEHCLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=33826 # 1q9uA.131.72 read from T0506.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9uA)K79 T0506 131 :PKAKLYL 1q9uA 70 :LLVGYFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33827 # 1txkA.131.412 read from T0506.t04.many.frag # found chain 1txkA in template set T0506 131 :PKAKLYLSL 1txkA 434 :AEMKKLPED Number of specific fragments extracted= 1 number of extra gaps= 0 total=33828 # 1xhnA.132.140 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1xhnA 141 :EMKTWPSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=33829 # 1lrv.132.53 read from T0506.t04.many.frag # found chain 1lrv in template set T0506 132 :KAKLYLSLP 1lrv 54 :LAVQYLADP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33830 # 1gvhA.132.37 read from T0506.t04.many.frag # found chain 1gvhA in template set T0506 132 :KAKLYLSLP 1gvhA 38 :ELKEIFNMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33831 # 2arcA.132.96 read from T0506.t04.many.frag # found chain 2arcA in training set Warning: unaligning (T0506)Y136 (2arcA)W107 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKL 2arcA 103 :YWHE T0506 137 :LSLP 2arcA 108 :LNWP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33833 # 1lfpA.132.159 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)K132 (1lfpA)G160 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1lfpA)P166 because P (beta_P) conformation "forbidden" or filtered. T0506 133 :AKLYL 1lfpA 161 :AEDVQ T0506 139 :LP 1lfpA 167 :GE Number of specific fragments extracted= 2 number of extra gaps= 2 total=33835 # 1uuyA.132.117 read from T0506.t04.many.frag # found chain 1uuyA in training set Warning: unaligning (T0506)P140 (1uuyA)A126 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1uuyA 118 :FAMLARSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=33836 # 1g5tA.132.110 read from T0506.t04.many.frag # found chain 1g5tA in training set Warning: unaligning (T0506)S138 (1g5tA)A117 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYL 1g5tA 111 :HGKRML T0506 139 :LP 1g5tA 118 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33838 # 1q7eA.132.286 read from T0506.t04.many.frag # found chain 1q7eA in training set Warning: unaligning (T0506)A133 (1q7eA)K288 because D (zeta) conformation "forbidden" or filtered. T0506 132 :K 1q7eA 287 :G T0506 134 :KLYLSLP 1q7eA 289 :PEWITDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33840 # 1fm0D.132.40 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 132 :KAKLYLSLP 1fm0D 41 :RWALALEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33841 # 1rlr.132.585 read from T0506.t04.many.frag # found chain 1rlr in template set T0506 132 :KAKLYLSLP 1rlr 586 :DLDTIANEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33842 # 1gjwA.132.519 read from T0506.t04.many.frag # found chain 1gjwA in template set Warning: unaligning (T0506)P140 (1gjwA)T528 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1gjwA 520 :NLRKVLSP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33843 # 1ye8A.132.144 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 132 :KAKLYLSLP 1ye8A 145 :LVKEIRRLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33844 # 1qd6C.132.28 read from T0506.t04.many.frag # found chain 1qd6C in template set Warning: unaligning (T0506)P140 (1qd6C)E66 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1qd6C 58 :WAENARKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=33845 # 1e6iA.132.29 read from T0506.t04.many.frag # found chain 1e6iA in template set T0506 132 :KAKLYLSLP 1e6iA 348 :AAWPFLQPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33846 # 1svb.132.186 read from T0506.t04.many.frag # found chain 1svb in template set T0506 132 :KAKLYLSLP 1svb 187 :RVASGVDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33847 # 1lq9A.132.34 read from T0506.t04.many.frag # found chain 1lq9A in training set Warning: unaligning (T0506)A133 (1lq9A)Q37 because G (3-10) conformation "forbidden" or filtered. T0506 132 :K 1lq9A 36 :V T0506 134 :KLYLSLP 1lq9A 38 :EWIREVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33849 1xi1A expands to /projects/compbio/data/pdb/1xi1.pdb.gz 1xi1A:# 1xi1A.132.469 read from T0506.t04.many.frag # adding 1xi1A to template set # found chain 1xi1A in template set Warning: unaligning (T0506)Y136 (1xi1A)I474 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1xi1A)K478 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKL 1xi1A 470 :VIKD T0506 137 :LSL 1xi1A 475 :VDP Number of specific fragments extracted= 2 number of extra gaps= 2 total=33851 1rqlA expands to /projects/compbio/data/pdb/1rql.pdb.gz 1rqlA:# 1rqlA.132.96 read from T0506.t04.many.frag # adding 1rqlA to template set # found chain 1rqlA in template set T0506 132 :KAKLYLSLP 1rqlA 97 :ILPRYASPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33852 # 1rv9A.132.188 read from T0506.t04.many.frag # found chain 1rv9A in training set Warning: unaligning (T0506)P140 (1rv9A)I197 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1rv9A 189 :EAATAFEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=33853 # 1xkrA.132.48 read from T0506.t04.many.frag # found chain 1xkrA in training set T0506 132 :KAKLYLSLP 1xkrA 48 :KVIFIAKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33854 # 1n08A.132.150 read from T0506.t04.many.frag # found chain 1n08A in training set Warning: unaligning (T0506)S138 (1n08A)K157 because G (3-10) conformation "forbidden" or filtered. T0506 132 :KAKLYL 1n08A 151 :SYSSYK T0506 139 :LP 1n08A 158 :DP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33856 # 1hp1A.132.467 read from T0506.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0506)K132 (1hp1A)G502 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)K134 (1hp1A)D504 because L (left) conformation "forbidden" or filtered. T0506 133 :A 1hp1A 503 :G T0506 135 :LYLSLP 1hp1A 505 :GYPRLD Number of specific fragments extracted= 2 number of extra gaps= 2 total=33858 # 1s3eA.132.409 read from T0506.t04.many.frag # found chain 1s3eA in training set Warning: unaligning (T0506)P140 (1s3eA)V418 because D (zeta) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1s3eA 410 :YGRVLRQP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33859 # 1q9uA.132.73 read from T0506.t04.many.frag # found chain 1q9uA in training set Warning: unaligning (T0506)S138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9uA)K79 Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9uA)K79 T0506 132 :KAKLYL 1q9uA 71 :LVGYFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33860 # 1lrv.132.197 read from T0506.t04.many.frag # found chain 1lrv in template set T0506 132 :KAKLYLSLP 1lrv 198 :DLLELLHDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=33861 # 1tqhA.132.176 read from T0506.t04.many.frag # found chain 1tqhA in training set Warning: unaligning (T0506)P140 (1tqhA)T185 because E (beta_S) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1tqhA 177 :HLDLIYAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33862 # 1h6fA.132.180 read from T0506.t04.many.frag # found chain 1h6fA in training set Warning: unaligning (T0506)S138 because last residue in template chain is (1h6fA)D285 T0506 132 :KAKLYL 1h6fA 279 :FAKGFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33863 # 1l8aA.132.809 read from T0506.t04.many.frag # found chain 1l8aA in template set T0506 132 :KAKLYLSLP 1l8aA 810 :QVRTYVPAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33864 # 1c1kA.132.130 read from T0506.t04.many.frag # found chain 1c1kA in training set Warning: unaligning (T0506)P140 (1c1kA)N139 because D (zeta) conformation "forbidden" or filtered. T0506 132 :KAKLYLSL 1c1kA 131 :AFKEIFEY Number of specific fragments extracted= 1 number of extra gaps= 1 total=33865 # 1qqqA.132.136 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)H147 T0506 132 :KAKLYLSL 1qqqA 137 :ELDKMALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33866 # 1xhnA.133.141 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1xhnA 142 :MKTWPSS Number of specific fragments extracted= 1 number of extra gaps= 1 total=33867 # 1fm0D.133.41 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 133 :AKLYLSLPD 1fm0D 42 :WALALEDGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33868 # 1lrv.133.54 read from T0506.t04.many.frag # found chain 1lrv in template set T0506 133 :AKLYLSLPD 1lrv 55 :AVQYLADPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33869 # 1lfpA.133.160 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)A133 (1lfpA)A161 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L135 (1lfpA)D163 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :K 1lfpA 162 :E T0506 136 :YLSLPD 1lfpA 164 :VQPGEE Number of specific fragments extracted= 2 number of extra gaps= 2 total=33871 # 1ye8A.133.145 read from T0506.t04.many.frag # found chain 1ye8A in training set Warning: unaligning (T0506)D141 (1ye8A)G154 because T (delta_L) conformation "forbidden" or filtered. T0506 133 :AKLYLSLP 1ye8A 146 :VKEIRRLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33872 # 1g5tA.133.111 read from T0506.t04.many.frag # found chain 1g5tA in training set T0506 133 :AKLYLSLPD 1g5tA 112 :GKRMLADPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33873 # 1fy7A.133.104 read from T0506.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0506)K134 (1fy7A)T263 because P (beta_P) conformation "forbidden" or filtered. T0506 133 :A 1fy7A 262 :K T0506 135 :LYLSLPD 1fy7A 264 :LYYDVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=33875 # 2arcA.133.97 read from T0506.t04.many.frag # found chain 2arcA in training set T0506 133 :AKLYLSLPD 2arcA 104 :WHEWLNWPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33876 # 1xkrA.133.49 read from T0506.t04.many.frag # found chain 1xkrA in training set T0506 133 :AKLYLSLPD 1xkrA 49 :VIFIAKDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33877 # 1svb.133.187 read from T0506.t04.many.frag # found chain 1svb in template set T0506 133 :AKLYLSLPD 1svb 188 :VASGVDLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33878 # 1lq9A.133.35 read from T0506.t04.many.frag # found chain 1lq9A in training set T0506 133 :AKLYLSLPD 1lq9A 37 :QEWIREVPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33879 # 1q7eA.133.287 read from T0506.t04.many.frag # found chain 1q7eA in training set Warning: unaligning (T0506)A133 (1q7eA)K288 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1q7eA)T293 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYL 1q7eA 289 :PEWI T0506 139 :LPD 1q7eA 294 :DPA Number of specific fragments extracted= 2 number of extra gaps= 2 total=33881 # 2c5lC.133.48 read from T0506.t04.many.frag # found chain 2c5lC in template set T0506 133 :AKLYLSLPD 2c5lC 2178 :ILSNPNPSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33882 # 1gttA.133.339 read from T0506.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1gttA)N348 because D (zeta) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1gttA 340 :KEAIPDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33883 # 1gjwA.133.520 read from T0506.t04.many.frag # found chain 1gjwA in template set Warning: unaligning (T0506)P140 (1gjwA)T528 because G (3-10) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1gjwA 521 :LRKVLSP T0506 141 :D 1gjwA 529 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=33885 # 1hp1A.133.468 read from T0506.t04.many.frag # found chain 1hp1A in training set T0506 133 :AKLYLSLPD 1hp1A 503 :GDGYPRLDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=33886 # 1n08A.133.151 read from T0506.t04.many.frag # found chain 1n08A in training set T0506 133 :AKLYLSLPD 1n08A 152 :YSSYKKDPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33887 1yewA expands to /projects/compbio/data/pdb/1yew.pdb.gz 1yewA:# 1yewA.133.343 read from T0506.t04.many.frag # adding 1yewA to template set # found chain 1yewA in template set T0506 133 :AKLYLSLPD 1yewA 376 :LSDIIYDPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33888 1i8nA expands to /projects/compbio/data/pdb/1i8n.pdb.gz 1i8nA:# 1i8nA.133.106 read from T0506.t04.many.frag # adding 1i8nA to template set # found chain 1i8nA in template set Warning: unaligning (T0506)L137 (1i8nA)Y111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1i8nA)D112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1i8nA)N115 because L (left) conformation "forbidden" or filtered. T0506 133 :AKLY 1i8nA 107 :SSLQ T0506 139 :LP 1i8nA 113 :QP Number of specific fragments extracted= 2 number of extra gaps= 2 total=33890 1jztA expands to /projects/compbio/data/pdb/1jzt.pdb.gz 1jztA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1jztA.133.123 read from T0506.t04.many.frag # adding 1jztA to template set # found chain 1jztA in template set T0506 133 :AKLYLSLPD 1jztA 124 :WLEYLKPEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33891 # 1gvhA.133.38 read from T0506.t04.many.frag # found chain 1gvhA in template set Warning: unaligning (T0506)S138 (1gvhA)N44 because P (beta_P) conformation "forbidden" or filtered. T0506 133 :AKLYL 1gvhA 39 :LKEIF T0506 139 :LPD 1gvhA 45 :MSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=33893 # 1sqwA.133.23 read from T0506.t04.many.frag # found chain 1sqwA in template set T0506 133 :AKLYLSLPD 1sqwA 24 :LQLLVDRPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33894 # 1xi1A.133.470 read from T0506.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0506)P140 (1xi1A)K478 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xi1A)K479 because P (beta_P) conformation "forbidden" or filtered. T0506 133 :AKLYLSL 1xi1A 471 :IKDIVDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33895 # 1lrv.133.126 read from T0506.t04.many.frag # found chain 1lrv in template set T0506 133 :AKLYLSLPD 1lrv 127 :LEQMAADRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33896 # 1rlr.133.586 read from T0506.t04.many.frag # found chain 1rlr in template set T0506 133 :AKLYLSLPD 1rlr 587 :LDTIANEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33897 # 1lrv.133.198 read from T0506.t04.many.frag # found chain 1lrv in template set Warning: unaligning (T0506)D141 (1lrv)D207 because E (beta_S) conformation "forbidden" or filtered. T0506 133 :AKLYLSLP 1lrv 199 :LLELLHDP Number of specific fragments extracted= 1 number of extra gaps= 1 total=33898 # 1duvG.133.258 read from T0506.t04.many.frag # found chain 1duvG in training set T0506 133 :AKLYLSLPD 1duvG 259 :MMQLTGNPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33899 # 2asfA.133.107 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 133 :AKLYLSLPD 2asfA 108 :YRTPRPNPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33900 # 1l8aA.133.810 read from T0506.t04.many.frag # found chain 1l8aA in template set T0506 133 :AKLYLSLPD 1l8aA 811 :VRTYVPADD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33901 # 1w6gA.133.163 read from T0506.t04.many.frag # found chain 1w6gA in template set T0506 133 :AKLYLSLPD 1w6gA 166 :SAWAHPVDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=33902 # 1xhnA.134.142 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1xhnA 143 :KTWPSS T0506 142 :T 1xhnA 151 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=33904 # 1fm0D.134.42 read from T0506.t04.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)S138 (1fm0D)E47 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYL 1fm0D 43 :ALAL T0506 139 :LPDT 1fm0D 48 :DGKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33906 # 1i8nA.134.107 read from T0506.t04.many.frag # found chain 1i8nA in template set Warning: unaligning (T0506)L137 (1i8nA)Y111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1i8nA)N115 because L (left) conformation "forbidden" or filtered. T0506 134 :KLY 1i8nA 108 :SLQ T0506 138 :SLP 1i8nA 112 :DQP T0506 142 :T 1i8nA 116 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=33909 # 1lfpA.134.161 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)S138 (1lfpA)P166 because P (beta_P) conformation "forbidden" or filtered. T0506 134 :KLYL 1lfpA 162 :EDVQ T0506 139 :LPDT 1lfpA 167 :GEEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33911 # 2asfA.134.108 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)K134 (2asfA)R109 because Y (epsilon') conformation "forbidden" or filtered. T0506 135 :LYLSLPDT 2asfA 110 :TPRPNPRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=33912 # 1fy7A.134.105 read from T0506.t04.many.frag # found chain 1fy7A in template set T0506 134 :KLYLSLPDT 1fy7A 263 :TLYYDVDPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33913 # 1sqwA.134.24 read from T0506.t04.many.frag # found chain 1sqwA in template set Warning: unaligning (T0506)T142 (1sqwA)G33 because S (epsilon) conformation "forbidden" or filtered. T0506 134 :KLYLSLPD 1sqwA 25 :QLLVDRPD Number of specific fragments extracted= 1 number of extra gaps= 1 total=33914 # 1yewA.134.344 read from T0506.t04.many.frag # found chain 1yewA in template set T0506 134 :KLYLSLPDT 1yewA 377 :SDIIYDPDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=33915 # 1lq9A.134.36 read from T0506.t04.many.frag # found chain 1lq9A in training set Warning: unaligning (T0506)D141 (1lq9A)G45 because T (delta_L) conformation "forbidden" or filtered. T0506 134 :KLYLSLP 1lq9A 38 :EWIREVP T0506 142 :T 1lq9A 46 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=33917 # 1lrv.134.55 read from T0506.t04.many.frag # found chain 1lrv in template set T0506 134 :KLYLSLPDT 1lrv 56 :VQYLADPFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=33918 # 1gttA.134.340 read from T0506.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1gttA 341 :EAIPDP T0506 141 :DT 1gttA 348 :NL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33920 # 1g5tA.134.112 read from T0506.t04.many.frag # found chain 1g5tA in training set T0506 134 :KLYLSLPDT 1g5tA 113 :KRMLADPLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33921 # 2c5lC.134.49 read from T0506.t04.many.frag # found chain 2c5lC in template set T0506 134 :KLYLSLPDT 2c5lC 2179 :LSNPNPSDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33922 # 1ye8A.134.146 read from T0506.t04.many.frag # found chain 1ye8A in training set T0506 134 :KLYLSLPDT 1ye8A 147 :KEIRRLPGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33923 # 1svb.134.188 read from T0506.t04.many.frag # found chain 1svb in template set T0506 134 :KLYLSLPDT 1svb 189 :ASGVDLAQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33924 # 1xkrA.134.50 read from T0506.t04.many.frag # found chain 1xkrA in training set T0506 134 :KLYLSLPDT 1xkrA 50 :IFIAKDPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33925 # 1q7eA.134.288 read from T0506.t04.many.frag # found chain 1q7eA in training set T0506 134 :KLYLSLPDT 1q7eA 289 :PEWITDPAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=33926 # 2arcA.134.98 read from T0506.t04.many.frag # found chain 2arcA in training set T0506 134 :KLYLSLPDT 2arcA 105 :HEWLNWPSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33927 # 1vl7A.134.130 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1vl7A 119 :EVLRGL T0506 141 :DT 1vl7A 126 :DF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33929 # 1jztA.134.124 read from T0506.t04.many.frag # found chain 1jztA in template set T0506 134 :KLYLSLPDT 1jztA 125 :LEYLKPEKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33930 # 1a7j.134.220 read from T0506.t04.many.frag # found chain 1a7j in template set T0506 134 :KLYLSLPDT 1a7j 221 :RWIPTADES Number of specific fragments extracted= 1 number of extra gaps= 0 total=33931 # 1l8aA.134.811 read from T0506.t04.many.frag # found chain 1l8aA in template set Warning: unaligning (T0506)D141 (1l8aA)D819 because E (beta_S) conformation "forbidden" or filtered. T0506 134 :KLYLSLP 1l8aA 812 :RTYVPAD T0506 142 :T 1l8aA 820 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=33933 # 1u7lA.134.222 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)L137 (1u7lA)A226 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1u7lA)E227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1u7lA)D228 because Y (epsilon') conformation "forbidden" or filtered. T0506 134 :KLY 1u7lA 223 :SVI T0506 140 :PDT 1u7lA 229 :AEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=33935 # 1qqqA.134.138 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)H147 Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 134 :KLYLSL 1qqqA 139 :DKMALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33936 # 1h6dA.134.295 read from T0506.t04.many.frag # found chain 1h6dA in template set T0506 134 :KLYLSLPDT 1h6dA 296 :ERFVEVEDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33937 # 1hp1A.134.469 read from T0506.t04.many.frag # found chain 1hp1A in training set Warning: unaligning (T0506)K134 (1hp1A)D504 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1hp1A)R508 because P (beta_P) conformation "forbidden" or filtered. T0506 135 :LYL 1hp1A 505 :GYP T0506 139 :LPDT 1hp1A 509 :LDNK Number of specific fragments extracted= 2 number of extra gaps= 2 total=33939 # 1xi1A.134.471 read from T0506.t04.many.frag # found chain 1xi1A in template set Warning: unaligning (T0506)P140 (1xi1A)K478 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xi1A)K479 because P (beta_P) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1xi1A 472 :KDIVDP T0506 142 :T 1xi1A 480 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=33941 # 1gjwA.134.521 read from T0506.t04.many.frag # found chain 1gjwA in template set Warning: unaligning (T0506)P140 (1gjwA)T528 because G (3-10) conformation "forbidden" or filtered. T0506 134 :KLYLSL 1gjwA 522 :RKVLSP T0506 141 :DT 1gjwA 529 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33943 # 2bghA.134.205 read from T0506.t04.many.frag # found chain 2bghA in template set T0506 134 :KLYLSLPDT 2bghA 206 :PELVPDENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33944 1wzdA expands to /projects/compbio/data/pdb/1wzd.pdb.gz 1wzdA:Skipped atom 182, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 719, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 1wzdA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 1wzdA # 1wzdA.134.157 read from T0506.t04.many.frag # adding 1wzdA to template set # found chain 1wzdA in template set Warning: unaligning (T0506)K134 (1wzdA)L158 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1wzdA)F163 because D (zeta) conformation "forbidden" or filtered. T0506 135 :LYLS 1wzdA 159 :GFYH T0506 140 :PDT 1wzdA 164 :EGI Number of specific fragments extracted= 2 number of extra gaps= 2 total=33946 # 1xhnA.135.143 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 135 :LYLSL 1xhnA 144 :TWPSS T0506 142 :TR 1xhnA 151 :WF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33948 # 1i8nA.135.108 read from T0506.t04.many.frag # found chain 1i8nA in template set Warning: unaligning (T0506)S138 (1i8nA)D112 because L (left) conformation "forbidden" or filtered. T0506 135 :LYL 1i8nA 109 :LQY T0506 139 :LPDTR 1i8nA 113 :QPNVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33950 # 1fm0D.135.43 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 135 :LYLSLPDTR 1fm0D 44 :LALEDGKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33951 # 2asfA.135.109 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 135 :LYLSLPDTR 2asfA 110 :TPRPNPRRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33952 # 1fy7A.135.106 read from T0506.t04.many.frag # found chain 1fy7A in template set T0506 135 :LYLSLPDTR 1fy7A 264 :LYYDVDPFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33953 # 1yewA.135.345 read from T0506.t04.many.frag # found chain 1yewA in template set Warning: unaligning (T0506)D141 (1yewA)D384 because D (zeta) conformation "forbidden" or filtered. T0506 135 :LYLSLP 1yewA 378 :DIIYDP T0506 142 :TR 1yewA 385 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33955 # 1sqwA.135.25 read from T0506.t04.many.frag # found chain 1sqwA in template set T0506 135 :LYLSLPDTR 1sqwA 26 :LLVDRPDGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33956 # 1lfpA.135.162 read from T0506.t04.many.frag # found chain 1lfpA in training set T0506 135 :LYLSLPDTR 1lfpA 163 :DVQPGEEVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=33957 # 1gttA.135.341 read from T0506.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 135 :LYLSL 1gttA 342 :AIPDP T0506 141 :DTR 1gttA 348 :NLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=33959 # 2c5lC.135.50 read from T0506.t04.many.frag # found chain 2c5lC in template set T0506 135 :LYLSLPDTR 2c5lC 2180 :SNPNPSDYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33960 # 1vl7A.135.131 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 135 :LYLSL 1vl7A 120 :VLRGL T0506 141 :DTR 1vl7A 126 :DFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=33962 # 1svb.135.189 read from T0506.t04.many.frag # found chain 1svb in template set T0506 135 :LYLSLPDTR 1svb 190 :SGVDLAQTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33963 # 1y8aA.135.290 read from T0506.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0506)D141 (1y8aA)E275 because L (left) conformation "forbidden" or filtered. T0506 135 :LYLSLP 1y8aA 269 :SAVSIP T0506 142 :TR 1y8aA 276 :TE Number of specific fragments extracted= 2 number of extra gaps= 1 total=33965 # 1lq9A.135.37 read from T0506.t04.many.frag # found chain 1lq9A in training set Warning: unaligning (T0506)D141 (1lq9A)G45 because T (delta_L) conformation "forbidden" or filtered. T0506 135 :LYLSLP 1lq9A 39 :WIREVP T0506 142 :TR 1lq9A 46 :FL Number of specific fragments extracted= 2 number of extra gaps= 1 total=33967 # 1a7j.135.221 read from T0506.t04.many.frag # found chain 1a7j in template set Warning: unaligning (T0506)L135 (1a7j)W222 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :YLSLPDTR 1a7j 223 :IPTADESV Number of specific fragments extracted= 1 number of extra gaps= 1 total=33968 # 1vajA.135.173 read from T0506.t04.many.frag # found chain 1vajA in template set T0506 135 :LYLSLPDTR 1vajA 174 :DCWLDEDTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=33969 # 1h6dA.135.296 read from T0506.t04.many.frag # found chain 1h6dA in template set T0506 135 :LYLSLPDTR 1h6dA 297 :RFVEVEDRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33970 # 2bghA.135.206 read from T0506.t04.many.frag # found chain 2bghA in template set T0506 135 :LYLSLPDTR 2bghA 207 :ELVPDENVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33971 # 1ty9A.135.174 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 135 :LYLSLPDTR 1ty9A 175 :PLPRPEGYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=33972 # 1xkrA.135.51 read from T0506.t04.many.frag # found chain 1xkrA in training set T0506 135 :LYLSLPDTR 1xkrA 51 :FIAKDPEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=33973 # 1qqqA.135.139 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)H147 Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 135 :LYLSL 1qqqA 140 :KMALA T0506 143 :R 1qqqA 148 :A Number of specific fragments extracted= 2 number of extra gaps= 0 total=33975 Number of alignments=2016 # 1g5tA.135.113 read from T0506.t04.many.frag # found chain 1g5tA in training set T0506 135 :LYLSLPDTR 1g5tA 114 :RMLADPLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=33976 # 1z4rA.135.146 read from T0506.t04.many.frag # found chain 1z4rA in template set T0506 135 :LYLSLPDTR 1z4rA 641 :YIKDYEGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=33977 # 1u7lA.135.223 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)S138 (1u7lA)E227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1u7lA)D228 because Y (epsilon') conformation "forbidden" or filtered. T0506 135 :LYL 1u7lA 224 :VIA T0506 140 :PDTR 1u7lA 229 :AEYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=33979 # 1l8aA.135.812 read from T0506.t04.many.frag # found chain 1l8aA in template set T0506 135 :LYLSLPDTR 1l8aA 813 :TYVPADDYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=33980 # 1lrv.135.56 read from T0506.t04.many.frag # found chain 1lrv in template set T0506 135 :LYLSLPDTR 1lrv 57 :QYLADPFWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=33981 # 1y0nA.135.44 read from T0506.t04.many.frag # found chain 1y0nA in template set Warning: unaligning (T0506)P140 (1y0nA)G48 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 because of BadResidue code BAD_PEPTIDE in next template residue (1y0nA)A50 Warning: unaligning (T0506)T142 because of BadResidue code BAD_PEPTIDE at template residue (1y0nA)A50 T0506 135 :LYLSL 1y0nA 43 :HALRR T0506 143 :R 1y0nA 51 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=33983 # 1ow1A.135.96 read from T0506.t04.many.frag # found chain 1ow1A in training set T0506 135 :LYLSLPDTR 1ow1A 3566 :RMTVETDYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=33984 # 1jztA.135.125 read from T0506.t04.many.frag # found chain 1jztA in template set T0506 135 :LYLSLPDTR 1jztA 126 :EYLKPEKTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=33985 1bob expands to /projects/compbio/data/pdb/1bob.pdb.gz 1bob:Warning: there is no chain 1bob will retry with 1bobA # 1bob.135.166 read from T0506.t04.many.frag # adding 1bob to template set # found chain 1bob in template set T0506 135 :LYLSLPDTR 1bob 167 :IDETDPSWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=33986 # 1i8nA.136.109 read from T0506.t04.many.frag # found chain 1i8nA in template set Warning: unaligning (T0506)L137 (1i8nA)Y111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1i8nA)D112 because L (left) conformation "forbidden" or filtered. T0506 136 :Y 1i8nA 110 :Q T0506 139 :LPDTRL 1i8nA 113 :QPNVVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=33988 # 1xhnA.136.144 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 136 :YLSL 1xhnA 145 :WPSS T0506 142 :TRL 1xhnA 151 :WFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=33990 # 2asfA.136.110 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 136 :YLSLPDTRL 2asfA 111 :PRPNPRRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33991 # 1fy7A.136.107 read from T0506.t04.many.frag # found chain 1fy7A in template set T0506 136 :YLSLPDTRL 1fy7A 265 :YYDVDPFLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=33992 # 1fm0D.136.44 read from T0506.t04.many.frag # found chain 1fm0D in training set T0506 136 :YLSLPDTRL 1fm0D 45 :ALEDGKLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=33993 # 1ty9A.136.175 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :YLSLPDT 1ty9A 176 :LPRPEGY T0506 144 :L 1ty9A 184 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=33995 # 1vl7A.136.132 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 136 :YLSL 1vl7A 121 :LRGL T0506 141 :DTRL 1vl7A 126 :DFRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=33997 # 1vajA.136.174 read from T0506.t04.many.frag # found chain 1vajA in template set T0506 136 :YLSLPDTRL 1vajA 175 :CWLDEDTKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=33998 # 1yewA.136.346 read from T0506.t04.many.frag # found chain 1yewA in template set Warning: unaligning (T0506)S138 (1yewA)Y381 because G (3-10) conformation "forbidden" or filtered. T0506 136 :YL 1yewA 379 :II T0506 139 :LPDTRL 1yewA 382 :DPDSRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34000 # 1gttA.136.342 read from T0506.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 136 :YLSL 1gttA 343 :IPDP T0506 141 :DTRL 1gttA 348 :NLTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34002 # 1ow1A.136.97 read from T0506.t04.many.frag # found chain 1ow1A in training set T0506 136 :YLSLPDTRL 1ow1A 3567 :MTVETDYCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34003 # 2c5lC.136.51 read from T0506.t04.many.frag # found chain 2c5lC in template set T0506 136 :YLSLPDTRL 2c5lC 2181 :NPNPSDYVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34004 # 1lfpA.136.163 read from T0506.t04.many.frag # found chain 1lfpA in training set T0506 136 :YLSLPDTRL 1lfpA 164 :VQPGEEVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34005 # 1a7j.136.222 read from T0506.t04.many.frag # found chain 1a7j in template set Warning: unaligning (T0506)S138 (1a7j)T225 because P (beta_P) conformation "forbidden" or filtered. T0506 136 :YL 1a7j 223 :IP T0506 139 :LPDTRL 1a7j 226 :ADESVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34007 # 1bob.136.167 read from T0506.t04.many.frag # found chain 1bob in template set T0506 136 :YLSLPDTRL 1bob 168 :DETDPSWQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34008 # 1h6dA.136.297 read from T0506.t04.many.frag # found chain 1h6dA in template set T0506 136 :YLSLPDTRL 1h6dA 298 :FVEVEDRII Number of specific fragments extracted= 1 number of extra gaps= 0 total=34009 # 2b8nA.136.348 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)S138 (2b8nA)G339 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YL 2b8nA 337 :LE T0506 139 :LPDTRL 2b8nA 340 :IEGVIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34011 # 1y8aA.136.291 read from T0506.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0506)D141 (1y8aA)E275 because L (left) conformation "forbidden" or filtered. T0506 136 :YLSLP 1y8aA 270 :AVSIP T0506 142 :TRL 1y8aA 276 :TEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34013 # 1svb.136.190 read from T0506.t04.many.frag # found chain 1svb in template set T0506 136 :YLSLPDTRL 1svb 191 :GVDLAQTVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34014 # 1lq9A.136.38 read from T0506.t04.many.frag # found chain 1lq9A in training set T0506 136 :YLSLPDTRL 1lq9A 40 :IREVPGFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34015 # 1d5tA.136.326 read from T0506.t04.many.frag # found chain 1d5tA in training set Warning: unaligning (T0506)P140 (1d5tA)K329 because G (3-10) conformation "forbidden" or filtered. T0506 136 :YLSL 1d5tA 325 :QVNR T0506 141 :DTRL 1d5tA 330 :SDIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34017 # 1t3tA.136.825 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 136 :YLSLPDTRL 1t3tA 818 :QLSTEDNAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34018 # 1u7lA.136.224 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)L137 (1u7lA)A226 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1u7lA)D228 because Y (epsilon') conformation "forbidden" or filtered. T0506 136 :Y 1u7lA 225 :I T0506 138 :S 1u7lA 227 :E T0506 140 :PDTRL 1u7lA 229 :AEYVL Number of specific fragments extracted= 3 number of extra gaps= 2 total=34021 # 2bghA.136.207 read from T0506.t04.many.frag # found chain 2bghA in template set T0506 136 :YLSLPDTRL 2bghA 208 :LVPDENVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34022 # 1wmiA.136.47 read from T0506.t04.many.frag # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YLSL 1wmiA 48 :LEGT T0506 141 :DTRL 1wmiA 53 :DLDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34024 # 1z4rA.136.147 read from T0506.t04.many.frag # found chain 1z4rA in template set Warning: unaligning (T0506)D141 (1z4rA)G647 because T (delta_L) conformation "forbidden" or filtered. T0506 136 :YLSLP 1z4rA 642 :IKDYE T0506 142 :TRL 1z4rA 648 :ATL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34026 # 1qqqA.136.140 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)P140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)H147 Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 136 :YLSL 1qqqA 141 :MALA T0506 143 :RL 1qqqA 148 :AF Number of specific fragments extracted= 2 number of extra gaps= 0 total=34028 Number of alignments=2017 # 1l1lA.136.596 read from T0506.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0506)D141 (1l1lA)N602 because L (left) conformation "forbidden" or filtered. T0506 136 :YLSLP 1l1lA 597 :DIYTE T0506 142 :TRL 1l1lA 603 :TTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=34030 1wleA expands to /projects/compbio/data/pdb/1wle.pdb.gz 1wleA:# 1wleA.136.324 read from T0506.t04.many.frag # adding 1wleA to template set # found chain 1wleA in template set Warning: unaligning (T0506)S138 (1wleA)R327 because D (zeta) conformation "forbidden" or filtered. T0506 136 :YL 1wleA 325 :LY T0506 139 :LPDTRL 1wleA 328 :VHHFTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34032 # 1sqwA.136.26 read from T0506.t04.many.frag # found chain 1sqwA in template set Warning: unaligning (T0506)T142 (1sqwA)G33 because S (epsilon) conformation "forbidden" or filtered. T0506 136 :YLSLPD 1sqwA 27 :LVDRPD T0506 143 :RL 1sqwA 34 :TY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34034 # 1i8nA.137.110 read from T0506.t04.many.frag # found chain 1i8nA in template set Warning: unaligning (T0506)L137 (1i8nA)Y111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1i8nA)D112 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1i8nA)N115 because L (left) conformation "forbidden" or filtered. T0506 139 :LP 1i8nA 113 :QP T0506 142 :TRLY 1i8nA 116 :VVQW Number of specific fragments extracted= 2 number of extra gaps= 2 total=34036 # 2asfA.137.111 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 137 :LSLPDTRLY 2asfA 112 :RPNPRRVVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34037 # 1ty9A.137.176 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D141 (1ty9A)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :LSLP 1ty9A 177 :PRPE T0506 142 :T 1ty9A 182 :Y T0506 144 :LY 1ty9A 184 :VF Number of specific fragments extracted= 3 number of extra gaps= 2 total=34040 # 1xhnA.137.145 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. T0506 137 :LSL 1xhnA 146 :PSS T0506 141 :DTRLY 1xhnA 150 :NWFFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34042 # 1ow1A.137.98 read from T0506.t04.many.frag # found chain 1ow1A in training set T0506 137 :LSLPDTRLY 1ow1A 3568 :TVETDYCLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34043 # 1vl7A.137.133 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 137 :LSL 1vl7A 122 :RGL T0506 141 :DTRLY 1vl7A 126 :DFRIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34045 # 1bob.137.168 read from T0506.t04.many.frag # found chain 1bob in template set T0506 137 :LSLPDTRLY 1bob 169 :ETDPSWQIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34046 # 1vajA.137.175 read from T0506.t04.many.frag # found chain 1vajA in template set T0506 137 :LSLPDTRLY 1vajA 176 :WLDEDTKVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34047 # 1fy7A.137.108 read from T0506.t04.many.frag # found chain 1fy7A in template set T0506 137 :LSLPDTRLY 1fy7A 266 :YDVDPFLFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34048 # 2c5lC.137.52 read from T0506.t04.many.frag # found chain 2c5lC in template set T0506 137 :LSLPDTRLY 2c5lC 2182 :PNPSDYVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34049 # 1a7j.137.223 read from T0506.t04.many.frag # found chain 1a7j in template set T0506 137 :LSLPDTRLY 1a7j 224 :PTADESVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34050 # 1gttA.137.343 read from T0506.t04.many.frag # found chain 1gttA in training set Warning: unaligning (T0506)P140 (1gttA)H347 because G (3-10) conformation "forbidden" or filtered. T0506 137 :LSL 1gttA 344 :PDP T0506 141 :DTRLY 1gttA 348 :NLTLR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34052 # 1yewA.137.347 read from T0506.t04.many.frag # found chain 1yewA in template set T0506 137 :LSLPDTRLY 1yewA 380 :IYDPDSRFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34053 # 2b8nA.137.349 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)S138 (2b8nA)G339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (2b8nA)G342 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :L 2b8nA 338 :E T0506 139 :LP 2b8nA 340 :IE T0506 142 :TRLY 2b8nA 343 :VILC Number of specific fragments extracted= 3 number of extra gaps= 2 total=34056 # 1l1lA.137.597 read from T0506.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0506)D141 (1l1lA)N602 because L (left) conformation "forbidden" or filtered. T0506 137 :LSLP 1l1lA 598 :IYTE T0506 142 :TRLY 1l1lA 603 :TTCV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34058 # 1pmmA.137.412 read from T0506.t04.many.frag # found chain 1pmmA in template set T0506 137 :LSLPDTRLY 1pmmA 413 :GEATDIVVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34059 # 1wmiA.137.48 read from T0506.t04.many.frag # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 1wmiA 49 :EGT T0506 141 :DTRLY 1wmiA 53 :DLDLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34061 # 1u7lA.137.225 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)L137 (1u7lA)A226 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S138 (1u7lA)E227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y145 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u7lA)N235 T0506 139 :LPDTRL 1u7lA 228 :DAEYVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=34062 # 1t3tA.137.826 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 137 :LSLPDTRLY 1t3tA 819 :LSTEDNALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34063 # 1wkqA.137.76 read from T0506.t04.many.frag # found chain 1wkqA in training set T0506 137 :LSLPDTRLY 1wkqA 69 :YQLDDCILY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34064 # 1fm0D.137.45 read from T0506.t04.many.frag # found chain 1fm0D in training set Warning: unaligning (T0506)S138 (1fm0D)E47 because G (3-10) conformation "forbidden" or filtered. T0506 137 :L 1fm0D 46 :L T0506 139 :LPDTRLY 1fm0D 48 :DGKLLAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34066 # 1lfpA.137.164 read from T0506.t04.many.frag # found chain 1lfpA in training set T0506 137 :LSLPDTRLY 1lfpA 165 :QPGEEVHII Number of specific fragments extracted= 1 number of extra gaps= 0 total=34067 # 1cfb.137.132 read from T0506.t04.many.frag # found chain 1cfb in template set Warning: unaligning (T0506)S138 (1cfb)N743 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1cfb)H748 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :L 1cfb 742 :H T0506 139 :LPDT 1cfb 744 :APNF T0506 144 :LY 1cfb 749 :YY Number of specific fragments extracted= 3 number of extra gaps= 2 total=34070 # 1z4rA.137.148 read from T0506.t04.many.frag # found chain 1z4rA in template set Warning: unaligning (T0506)D141 (1z4rA)G647 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSLP 1z4rA 643 :KDYE T0506 142 :TRLY 1z4rA 648 :ATLM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34072 1vlrA expands to /projects/compbio/data/pdb/1vlr.pdb.gz 1vlrA:Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 566, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 568, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 570, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 572, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 574, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 576, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 578, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 580, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 956, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 958, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 960, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1230, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1232, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1234, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1236, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1238, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1419, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1421, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1423, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1425, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1427, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1429, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1433, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1498, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1500, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1502, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1504, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1506, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1508, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1510, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1512, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1514, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1516, because occupancy 0.500 <= existing 0.500 in 1vlrA Skipped atom 1518, because occupancy 0.500 <= existing 0.500 in 1vlrA # 1vlrA.137.221 read from T0506.t04.many.frag # adding 1vlrA to template set # found chain 1vlrA in template set Warning: unaligning (T0506)S138 (1vlrA)Q211 because Y (epsilon') conformation "forbidden" or filtered. T0506 137 :L 1vlrA 210 :Q T0506 139 :LPDTRLY 1vlrA 212 :LDDLYLI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34074 # 1jb3A.137.76 read from T0506.t04.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)P140 (1jb3A)G81 because T (delta_L) conformation "forbidden" or filtered. T0506 137 :LSL 1jb3A 78 :VST T0506 141 :DTRLY 1jb3A 82 :DTRIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34076 # 1h6dA.137.298 read from T0506.t04.many.frag # found chain 1h6dA in template set T0506 137 :LSLPDTRLY 1h6dA 299 :VEVEDRIIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=34077 # 1y8aA.137.292 read from T0506.t04.many.frag # found chain 1y8aA in training set Warning: unaligning (T0506)D141 (1y8aA)E275 because L (left) conformation "forbidden" or filtered. T0506 137 :LSLP 1y8aA 271 :VSIP T0506 142 :TRLY 1y8aA 276 :TEIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34079 # 2bghA.137.208 read from T0506.t04.many.frag # found chain 2bghA in template set Warning: unaligning (T0506)S138 (2bghA)P210 because P (beta_P) conformation "forbidden" or filtered. T0506 137 :L 2bghA 209 :V T0506 139 :LPDTRLY 2bghA 211 :DENVVMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34081 # 1jb0D.137.74 read from T0506.t04.many.frag # found chain 1jb0D in template set Warning: unaligning (T0506)S138 (1jb0D)K76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1jb0D)N78 because G (3-10) conformation "forbidden" or filtered. T0506 137 :L 1jb0D 75 :R T0506 139 :L 1jb0D 77 :I T0506 141 :DTRLY 1jb0D 79 :DYKIY Number of specific fragments extracted= 3 number of extra gaps= 2 total=34084 # 2asfA.138.112 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)L139 (2asfA)N114 because D (zeta) conformation "forbidden" or filtered. T0506 138 :S 2asfA 113 :P T0506 140 :PDTRLYR 2asfA 115 :PRRVVIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34086 # 1ty9A.138.177 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SLPDT 1ty9A 178 :RPEGY T0506 144 :LYR 1ty9A 184 :VFE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34088 # 1i8nA.138.111 read from T0506.t04.many.frag # found chain 1i8nA in template set T0506 138 :SLPDTRLYR 1i8nA 112 :DQPNVVQWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34089 # 1vl7A.138.134 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 138 :SL 1vl7A 123 :GL T0506 141 :DTRLYR 1vl7A 126 :DFRIFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34091 # 1xhnA.138.146 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 138 :SL 1xhnA 147 :SS T0506 142 :TRLYR 1xhnA 151 :WFFAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34093 # 1ow1A.138.99 read from T0506.t04.many.frag # found chain 1ow1A in training set Warning: unaligning (T0506)T142 (1ow1A)Y3573 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SLPD 1ow1A 3569 :VETD T0506 143 :RLYR 1ow1A 3574 :CLLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34095 # 1pmmA.138.413 read from T0506.t04.many.frag # found chain 1pmmA in template set T0506 138 :SLPDTRLYR 1pmmA 414 :EATDIVVMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34096 # 1vajA.138.176 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)R143 (1vajA)K182 because P (beta_P) conformation "forbidden" or filtered. T0506 138 :SLPDT 1vajA 177 :LDEDT T0506 144 :LYR 1vajA 183 :VYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34098 # 1c8uA.138.238 read from T0506.t04.many.frag # found chain 1c8uA in template set T0506 138 :SLPDTRLYR 1c8uA 240 :NLNEWLLYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34099 # 1uscA.138.126 read from T0506.t04.many.frag # found chain 1uscA in training set T0506 138 :SLPDTRLYR 1uscA 127 :TFGDHDLFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34100 # 1u7lA.138.226 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)S138 (1u7lA)E227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L139 (1u7lA)D228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y145 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u7lA)N235 Warning: unaligning (T0506)R146 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u7lA)N235 T0506 140 :PDTRL 1u7lA 229 :AEYVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=34101 # 1bob.138.169 read from T0506.t04.many.frag # found chain 1bob in template set T0506 138 :SLPDTRLYR 1bob 170 :TDPSWQIYW Number of specific fragments extracted= 1 number of extra gaps= 0 total=34102 # 1t3tA.138.827 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 138 :SLPDTRLYR 1t3tA 820 :STEDNALLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34103 1jg5A expands to /projects/compbio/data/pdb/1jg5.pdb.gz 1jg5A:# 1jg5A.138.70 read from T0506.t04.many.frag # adding 1jg5A to template set # found chain 1jg5A in template set T0506 138 :SLPDTRLYR 1jg5A 71 :GVGQTLVWC Number of specific fragments extracted= 1 number of extra gaps= 0 total=34104 1q6uA expands to /projects/compbio/data/pdb/1q6u.pdb.gz 1q6uA:# 1q6uA.138.208 read from T0506.t04.many.frag # adding 1q6uA to template set # found chain 1q6uA in template set Warning: unaligning (T0506)P140 (1q6uA)N211 because L (left) conformation "forbidden" or filtered. T0506 138 :SL 1q6uA 209 :PP T0506 141 :DTRLYR 1q6uA 212 :STLVFD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34106 1xv2A expands to /projects/compbio/data/pdb/1xv2.pdb.gz 1xv2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1xv2A.138.107 read from T0506.t04.many.frag # adding 1xv2A to template set # found chain 1xv2A in template set Warning: unaligning (T0506)P140 (1xv2A)N107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xv2A)L108 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1xv2A)S110 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SL 1xv2A 105 :SE T0506 142 :T 1xv2A 109 :F T0506 144 :LYR 1xv2A 111 :AVK Number of specific fragments extracted= 3 number of extra gaps= 2 total=34109 # 1l1lA.138.598 read from T0506.t04.many.frag # found chain 1l1lA in training set Warning: unaligning (T0506)D141 (1l1lA)N602 because L (left) conformation "forbidden" or filtered. T0506 138 :SLP 1l1lA 599 :YTE T0506 142 :TRLYR 1l1lA 603 :TTCVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34111 # 1p57A.138.93 read from T0506.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0506)L139 (1p57A)C95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1p57A)G98 because L (left) conformation "forbidden" or filtered. T0506 138 :S 1p57A 94 :D T0506 140 :PD 1p57A 96 :PR T0506 143 :RLYR 1p57A 99 :RFLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=34114 # 1wddA.138.91 read from T0506.t04.many.frag # found chain 1wddA in training set Warning: unaligning (T0506)S138 (1wddA)G92 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1wddA)D94 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1wddA)N95 because D (zeta) conformation "forbidden" or filtered. T0506 139 :L 1wddA 93 :E T0506 142 :TRLYR 1wddA 96 :QYIAY Number of specific fragments extracted= 2 number of extra gaps= 2 total=34116 # 2f06A.138.106 read from T0506.t04.many.frag # found chain 2f06A in template set Warning: unaligning (T0506)P140 (2f06A)N106 because S (epsilon) conformation "forbidden" or filtered. T0506 138 :SL 2f06A 104 :AN T0506 141 :DTRLYR 2f06A 107 :NVANVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34118 2cx7A expands to /projects/compbio/data/pdb/2cx7.pdb.gz 2cx7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cx7A.138.43 read from T0506.t04.many.frag # adding 2cx7A to template set # found chain 2cx7A in template set Warning: unaligning (T0506)L139 (2cx7A)F45 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (2cx7A)V49 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :S 2cx7A 44 :G T0506 140 :PDT 2cx7A 46 :PKG T0506 144 :LYR 2cx7A 50 :AVV Number of specific fragments extracted= 3 number of extra gaps= 2 total=34121 # 1ahsA.138.110 read from T0506.t04.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)P140 (1ahsA)A238 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1ahsA)R239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1ahsA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0506 138 :SL 1ahsA 236 :PG T0506 142 :T 1ahsA 240 :R T0506 144 :LYR 1ahsA 242 :ILQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=34124 # 1wmiA.138.49 read from T0506.t04.many.frag # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 1wmiA 50 :GT T0506 141 :DTRLYR 1wmiA 53 :DLDLYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34126 # 1jb3A.138.77 read from T0506.t04.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)P140 (1jb3A)G81 because T (delta_L) conformation "forbidden" or filtered. T0506 138 :SL 1jb3A 79 :ST T0506 141 :DTRLYR 1jb3A 82 :DTRIFF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34128 # 1s1dA.138.281 read from T0506.t04.many.frag # found chain 1s1dA in training set Warning: unaligning (T0506)P140 (1s1dA)D284 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1s1dA)D285 because L (left) conformation "forbidden" or filtered. T0506 138 :SL 1s1dA 282 :NT T0506 142 :TRLYR 1s1dA 286 :QIIVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34130 # 1jb0D.138.75 read from T0506.t04.many.frag # found chain 1jb0D in template set Warning: unaligning (T0506)S138 (1jb0D)K76 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)P140 (1jb0D)N78 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1jb0D 77 :I T0506 141 :DTRLYR 1jb0D 79 :DYKIYR Number of specific fragments extracted= 2 number of extra gaps= 2 total=34132 # 1lfpA.138.165 read from T0506.t04.many.frag # found chain 1lfpA in training set T0506 138 :SLPDTRLYR 1lfpA 166 :PGEEVHIIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34133 # 1vlrA.138.222 read from T0506.t04.many.frag # found chain 1vlrA in template set T0506 138 :SLPDTRLYR 1vlrA 211 :QLDDLYLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34134 # 2c5lC.138.53 read from T0506.t04.many.frag # found chain 2c5lC in template set T0506 138 :SLPDTRLYR 2c5lC 2183 :NPSDYVLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34135 # 1yd0A.138.11 read from T0506.t04.many.frag # found chain 1yd0A in training set T0506 138 :SLPDTRLYR 1yd0A 12 :APEEPGVYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34136 # 2asfA.139.113 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 139 :LPDTRLYRL 2asfA 114 :NPRRVVIEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34137 # 1vl7A.139.135 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 139 :L 1vl7A 124 :L T0506 141 :DTRLYRL 1vl7A 126 :DFRIFQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34139 # 1ty9A.139.178 read from T0506.t04.many.frag # found chain 1ty9A in training set T0506 139 :LPDTRLYRL 1ty9A 179 :PEGYCVFEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34140 # 1c8uA.139.239 read from T0506.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0506)D141 (1c8uA)E243 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R146 (1c8uA)S248 because P (beta_P) conformation "forbidden" or filtered. T0506 139 :LP 1c8uA 241 :LN T0506 142 :TRLY 1c8uA 244 :WLLY T0506 147 :L 1c8uA 249 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=34143 # 1xhnA.139.147 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1xhnA 148 :S T0506 141 :DTRLYRL 1xhnA 150 :NWFFAKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34145 # 1ahsA.139.111 read from T0506.t04.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)P140 (1ahsA)A238 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1ahsA 237 :G T0506 141 :DTRLYRL 1ahsA 239 :RRSILQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34147 # 1vajA.139.177 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)L147 (1vajA)F186 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :LPDTRLYR 1vajA 178 :DEDTKVYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=34148 # 1u7lA.139.227 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)L139 (1u7lA)D228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Y145 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u7lA)N235 Warning: unaligning (T0506)R146 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u7lA)N235 T0506 140 :PDTRL 1u7lA 229 :AEYVL T0506 147 :L 1u7lA 236 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34150 # 1xksA.139.216 read from T0506.t04.many.frag # found chain 1xksA in template set T0506 139 :LPDTRLYRL 1xksA 281 :RERSSFYSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34151 # 1pmmA.139.414 read from T0506.t04.many.frag # found chain 1pmmA in template set T0506 139 :LPDTRLYRL 1pmmA 415 :ATDIVVMRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34152 # 1i8nA.139.112 read from T0506.t04.many.frag # found chain 1i8nA in template set Warning: unaligning (T0506)D141 (1i8nA)N115 because L (left) conformation "forbidden" or filtered. T0506 139 :LP 1i8nA 113 :QP T0506 142 :TRLYRL 1i8nA 116 :VVQWHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34154 # 1q6uA.139.209 read from T0506.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0506)P140 (1q6uA)N211 because L (left) conformation "forbidden" or filtered. T0506 139 :L 1q6uA 210 :P T0506 141 :DTRLYRL 1q6uA 212 :STLVFDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34156 # 1uscA.139.127 read from T0506.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)P140 (1uscA)G129 because S (epsilon) conformation "forbidden" or filtered. T0506 139 :L 1uscA 128 :F T0506 141 :DTRLYRL 1uscA 130 :DHDLFVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34158 # 1ow1A.139.100 read from T0506.t04.many.frag # found chain 1ow1A in training set T0506 139 :LPDTRLYRL 1ow1A 3570 :ETDYCLLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34159 # 1yd0A.139.12 read from T0506.t04.many.frag # found chain 1yd0A in training set Warning: unaligning (T0506)R143 (1yd0A)G17 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :LPDT 1yd0A 13 :PEEP T0506 144 :LYRL 1yd0A 18 :VYIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34161 # 1hx6A.139.352 read from T0506.t04.many.frag # found chain 1hx6A in training set T0506 139 :LPDTRLYRL 1hx6A 354 :QYGNVGFVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34162 # 1bob.139.170 read from T0506.t04.many.frag # found chain 1bob in template set T0506 139 :LPDTRLYRL 1bob 171 :DPSWQIYWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34163 # 1ujcA.139.127 read from T0506.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)T142 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0506 139 :LPD 1ujcA 128 :FTT T0506 143 :RLYRL 1ujcA 132 :AIASV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34165 1iznB expands to /projects/compbio/data/pdb/1izn.pdb.gz 1iznB:# 1iznB.139.160 read from T0506.t04.many.frag # adding 1iznB to template set # found chain 1iznB in template set Warning: unaligning (T0506)P140 (1iznB)G162 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1iznB)R163 because L (left) conformation "forbidden" or filtered. T0506 139 :L 1iznB 161 :S T0506 142 :TRLYRL 1iznB 164 :TAHYKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34167 # 1xv2A.139.108 read from T0506.t04.many.frag # found chain 1xv2A in template set Warning: unaligning (T0506)P140 (1xv2A)N107 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1xv2A 106 :E T0506 141 :DTRLYRL 1xv2A 108 :LFSAVKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34169 # 1txvA.139.246 read from T0506.t04.many.frag # found chain 1txvA in template set T0506 139 :LPDTRLYRL 1txvA 247 :DLNTTEYVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34170 # 1jg5A.139.71 read from T0506.t04.many.frag # found chain 1jg5A in template set T0506 139 :LPDTRLYRL 1jg5A 72 :VGQTLVWCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34171 # 2cx7A.139.44 read from T0506.t04.many.frag # found chain 2cx7A in template set Warning: unaligning (T0506)R143 (2cx7A)V49 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L144 (2cx7A)A50 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :LPDT 2cx7A 45 :FPKG T0506 145 :YRL 2cx7A 51 :VVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34173 # 1wddA.139.92 read from T0506.t04.many.frag # found chain 1wddA in training set Warning: unaligning (T0506)P140 (1wddA)D94 because G (3-10) conformation "forbidden" or filtered. T0506 139 :L 1wddA 93 :E T0506 141 :DTRLYRL 1wddA 95 :NQYIAYV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34175 # 1tl2A.139.95 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)T142 (1tl2A)G99 because T (delta_L) conformation "forbidden" or filtered. T0506 139 :LPD 1tl2A 96 :DPN T0506 143 :RLYRL 1tl2A 100 :YLYAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34177 # 1p57A.139.94 read from T0506.t04.many.frag # found chain 1p57A in training set Warning: unaligning (T0506)L139 (1p57A)C95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1p57A)G98 because L (left) conformation "forbidden" or filtered. T0506 140 :PD 1p57A 96 :PR T0506 143 :RLYRL 1p57A 99 :RFLAA Number of specific fragments extracted= 2 number of extra gaps= 2 total=34179 # 1jb3A.139.78 read from T0506.t04.many.frag # found chain 1jb3A in training set Warning: unaligning (T0506)P140 (1jb3A)G81 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L147 (1jb3A)V88 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :L 1jb3A 80 :T T0506 141 :DTRLYR 1jb3A 82 :DTRIFF Number of specific fragments extracted= 2 number of extra gaps= 2 total=34181 # 1wmiA.139.50 read from T0506.t04.many.frag # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 139 :L 1wmiA 51 :T T0506 141 :DTRLYRL 1wmiA 53 :DLDLYRA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34183 # 1uwfA.139.120 read from T0506.t04.many.frag # found chain 1uwfA in training set T0506 139 :LPDTRLYRL 1uwfA 121 :KAGSLIAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34184 1p5tA expands to /projects/compbio/data/pdb/1p5t.pdb.gz 1p5tA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 1p5tA Skipped atom 716, because occupancy 0.500 <= existing 0.500 in 1p5tA # 1p5tA.139.22 read from T0506.t04.many.frag # adding 1p5tA to template set # found chain 1p5tA in template set Warning: unaligning (T0506)P140 (1p5tA)Q24 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1p5tA)G25 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1p5tA)Y27 because Y (epsilon') conformation "forbidden" or filtered. T0506 139 :L 1p5tA 23 :L T0506 142 :T 1p5tA 26 :S T0506 144 :LYRL 1p5tA 28 :ILRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=34187 # 1vl7A.140.136 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)P140 (1vl7A)A125 because E (beta_S) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1vl7A 126 :DFRIFQLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34188 # 2asfA.140.114 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 140 :PDTRLYRLR 2asfA 115 :PRRVVIEVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34189 # 1ty9A.140.179 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 T0506 140 :PDT 1ty9A 180 :EGY T0506 144 :LYRL 1ty9A 184 :VFEL Number of specific fragments extracted= 2 number of extra gaps= 2 total=34191 # 1xhnA.140.148 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)P140 (1xhnA)H149 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 142 :TRLYRLR 1xhnA 151 :WFFAKLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=34192 # 1c8uA.140.240 read from T0506.t04.many.frag # found chain 1c8uA in template set T0506 140 :PDTRLYRLR 1c8uA 242 :NEWLLYSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34193 # 1ahsA.140.112 read from T0506.t04.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)P140 (1ahsA)A238 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1ahsA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1ahsA 239 :RR T0506 144 :LYRLR 1ahsA 242 :ILQFE Number of specific fragments extracted= 2 number of extra gaps= 2 total=34195 # 1vajA.140.178 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)L147 (1vajA)F186 because Y (epsilon') conformation "forbidden" or filtered. T0506 140 :PDTRLYR 1vajA 179 :EDTKVYK T0506 148 :R 1vajA 187 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34197 # 2furA.140.147 read from T0506.t04.many.frag # found chain 2furA in template set T0506 140 :PDTRLYRLR 2furA 147 :NGVFVFAVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34198 # 1uwcA.140.45 read from T0506.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0506)P140 (1uwcA)T46 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)L144 (1uwcA)G50 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DTR 1uwcA 47 :DIN T0506 145 :YRLR 1uwcA 51 :WILR Number of specific fragments extracted= 2 number of extra gaps= 2 total=34200 # 1q6uA.140.210 read from T0506.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0506)P140 (1q6uA)N211 because L (left) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1q6uA 212 :STLVFDVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=34201 # 1uscA.140.128 read from T0506.t04.many.frag # found chain 1uscA in training set T0506 140 :PDTRLYRLR 1uscA 129 :GDHDLFVGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34202 # 1wubA.140.74 read from T0506.t04.many.frag # found chain 1wubA in training set T0506 140 :PDTRLYRLR 1wubA 75 :EQYPEIRFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34203 # 1u7lA.140.228 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)Y145 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u7lA)N235 Warning: unaligning (T0506)R146 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u7lA)N235 T0506 140 :PDTRL 1u7lA 229 :AEYVL T0506 147 :LR 1u7lA 236 :VH Number of specific fragments extracted= 2 number of extra gaps= 1 total=34205 # 1xksA.140.217 read from T0506.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)T142 (1xksA)S284 because L (left) conformation "forbidden" or filtered. T0506 140 :PD 1xksA 282 :ER T0506 143 :RLYRLR 1xksA 285 :SFYSLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34207 # 1ujcA.140.128 read from T0506.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)D141 (1ujcA)T130 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)T142 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0506 140 :P 1ujcA 129 :T T0506 143 :RLYRLR 1ujcA 132 :AIASVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34209 # 1svb.140.322 read from T0506.t04.many.frag # found chain 1svb in template set Warning: unaligning (T0506)P140 (1svb)H323 because G (3-10) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1svb 324 :DTVVMEVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34210 # 1ok7A.140.275 read from T0506.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)R143 (1ok7A)R279 because P (beta_P) conformation "forbidden" or filtered. T0506 140 :PDT 1ok7A 276 :EKF T0506 144 :LYRLR 1ok7A 280 :GVRLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34212 # 1pmmA.140.415 read from T0506.t04.many.frag # found chain 1pmmA in template set T0506 140 :PDTRLYRLR 1pmmA 416 :TDIVVMRIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34213 # 1iznB.140.161 read from T0506.t04.many.frag # found chain 1iznB in template set Warning: unaligning (T0506)P140 (1iznB)G162 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D141 (1iznB)R163 because L (left) conformation "forbidden" or filtered. T0506 142 :TRLYRLR 1iznB 164 :TAHYKLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34214 # 1hx6A.140.353 read from T0506.t04.many.frag # found chain 1hx6A in training set Warning: unaligning (T0506)D141 (1hx6A)G356 because T (delta_L) conformation "forbidden" or filtered. T0506 140 :P 1hx6A 355 :Y T0506 142 :TRLYRLR 1hx6A 357 :NVGFVVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34216 # 1umhA.140.149 read from T0506.t04.many.frag # found chain 1umhA in template set T0506 140 :PDTRLYRLR 1umhA 263 :PGVRFVRFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34217 # 1i78A.140.215 read from T0506.t04.many.frag # found chain 1i78A in template set Warning: unaligning (T0506)D141 (1i78A)G217 because D (zeta) conformation "forbidden" or filtered. T0506 140 :P 1i78A 216 :K T0506 142 :TRLYRLR 1i78A 218 :RITYRSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34219 # 1ow1A.140.101 read from T0506.t04.many.frag # found chain 1ow1A in training set T0506 140 :PDTRLYRLR 1ow1A 3571 :TDYCLLLAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34220 # 1uasA.140.351 read from T0506.t04.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)P140 (1uasA)H352 because T (delta_L) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1uasA 353 :DCKMYVLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=34221 1u9iA expands to /projects/compbio/data/pdb/1u9i.pdb.gz 1u9iA:Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O3P for alphabet: pdb_atoms Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O3P for alphabet: pdb_atoms # 1u9iA.140.212 read from T0506.t04.many.frag # adding 1u9iA to template set # found chain 1u9iA in template set Warning: unaligning (T0506)P140 (1u9iA)G213 because L (left) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1u9iA 214 :ERRRRTLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=34222 # 1xipA.140.243 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)P140 (1xipA)Y243 because E (beta_S) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1xipA 244 :DQKMYIIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=34223 # 1i8nA.140.113 read from T0506.t04.many.frag # found chain 1i8nA in template set Warning: unaligning (T0506)D141 (1i8nA)N115 because L (left) conformation "forbidden" or filtered. T0506 140 :P 1i8nA 114 :P T0506 142 :TRLYRLR 1i8nA 116 :VVQWHLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=34225 # 1wmiA.140.51 read from T0506.t04.many.frag # found chain 1wmiA in template set Warning: unaligning (T0506)P140 (1wmiA)G52 because T (delta_L) conformation "forbidden" or filtered. T0506 141 :DTRLYRLR 1wmiA 53 :DLDLYRAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=34226 # 1xv2A.140.109 read from T0506.t04.many.frag # found chain 1xv2A in template set Warning: unaligning (T0506)P140 (1xv2A)N107 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1xv2A)S110 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1xv2A 108 :LF T0506 144 :LYRLR 1xv2A 111 :AVKIY Number of specific fragments extracted= 2 number of extra gaps= 2 total=34228 # 1yd0A.140.13 read from T0506.t04.many.frag # found chain 1yd0A in training set T0506 140 :PDTRLYRLR 1yd0A 14 :EEPGVYIFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34229 # 1vl7A.141.137 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 141 :DTRLYRLRT 1vl7A 126 :DFRIFQLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34230 # 1ty9A.141.180 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)D141 (1ty9A)G181 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 142 :T 1ty9A 182 :Y T0506 144 :LYRL 1ty9A 184 :VFEL Number of specific fragments extracted= 2 number of extra gaps= 3 total=34232 # 2asfA.141.115 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 141 :DTRLYRLRT 2asfA 116 :RRVVIEVQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34233 # 1xhnA.141.149 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D141 (1xhnA)N150 because L (left) conformation "forbidden" or filtered. T0506 142 :TRLYRLRT 1xhnA 151 :WFFAKLNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=34234 # 1c8uA.141.241 read from T0506.t04.many.frag # found chain 1c8uA in template set T0506 141 :DTRLYRLRT 1c8uA 243 :EWLLYSVES Number of specific fragments extracted= 1 number of extra gaps= 0 total=34235 # 1ahsA.141.113 read from T0506.t04.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)D141 (1ahsA)R239 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R143 (1ahsA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :T 1ahsA 240 :R T0506 144 :LYRLRT 1ahsA 242 :ILQFEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34237 # 2furA.141.148 read from T0506.t04.many.frag # found chain 2furA in template set T0506 141 :DTRLYRLRT 2furA 148 :GVFVFAVKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34238 # 1vajA.141.179 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)R143 (1vajA)K182 because P (beta_P) conformation "forbidden" or filtered. T0506 141 :DT 1vajA 180 :DT T0506 144 :LYRLRT 1vajA 183 :VYKFTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34240 # 1uwcA.141.46 read from T0506.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0506)D141 (1uwcA)D47 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L144 (1uwcA)G50 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :TR 1uwcA 48 :IN T0506 145 :YRLRT 1uwcA 51 :WILRD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34242 # 1wubA.141.75 read from T0506.t04.many.frag # found chain 1wubA in training set T0506 141 :DTRLYRLRT 1wubA 76 :QYPEIRFVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34243 # 1q6uA.141.211 read from T0506.t04.many.frag # found chain 1q6uA in template set T0506 141 :DTRLYRLRT 1q6uA 212 :STLVFDVEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34244 # 1zsoA.141.100 read from T0506.t04.many.frag # found chain 1zsoA in template set T0506 141 :DTRLYRLRT 1zsoA 93 :WRDFASFEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=34245 # 1uscA.141.129 read from T0506.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)R146 (1uscA)V135 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 (1uscA)R137 because P (beta_P) conformation "forbidden" or filtered. T0506 141 :DTRLY 1uscA 130 :DHDLF T0506 147 :L 1uscA 136 :G T0506 149 :T 1uscA 138 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=34248 # 1u7lA.141.229 read from T0506.t04.many.frag # found chain 1u7lA in training set Warning: unaligning (T0506)Y145 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1u7lA)N235 Warning: unaligning (T0506)R146 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1u7lA)N235 T0506 141 :DTRL 1u7lA 230 :EYVL T0506 147 :LRT 1u7lA 236 :VHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34250 1rc6A expands to /projects/compbio/data/pdb/1rc6.pdb.gz 1rc6A:# 1rc6A.141.57 read from T0506.t04.many.frag # adding 1rc6A to template set # found chain 1rc6A in template set T0506 141 :DTRLYRLRT 1rc6A 1058 :SFVDYLVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34251 # 1zkoA.141.105 read from T0506.t04.many.frag # found chain 1zkoA in template set T0506 141 :DTRLYRLRT 1zkoA 94 :EGWLFKMEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34252 # 1ujcA.141.129 read from T0506.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)T142 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0506 141 :D 1ujcA 130 :T T0506 143 :RLYRLRT 1ujcA 132 :AIASVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34254 # 1oruA.141.158 read from T0506.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0506)D141 (1oruA)G156 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)L144 (1oruA)G159 because S (epsilon) conformation "forbidden" or filtered. T0506 142 :TR 1oruA 157 :IR T0506 145 :YRLRT 1oruA 160 :IVCIV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34256 # 1u9iA.141.213 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)D141 (1u9iA)E214 because T (delta_L) conformation "forbidden" or filtered. T0506 142 :TRLYRLRT 1u9iA 215 :RRRRTLEI Number of specific fragments extracted= 1 number of extra gaps= 1 total=34257 # 1xipA.141.244 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)D141 (1xipA)D244 because E (beta_S) conformation "forbidden" or filtered. T0506 142 :TRLYRLRT 1xipA 245 :QKMYIIKH Number of specific fragments extracted= 1 number of extra gaps= 1 total=34258 # 1nlfA.141.229 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DTRLYRL 1nlfA 230 :RRFFVRF T0506 149 :T 1nlfA 238 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=34260 # 1flmA.141.106 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R143 (1flmA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1flmA 107 :AR T0506 144 :LYRLRT 1flmA 110 :ALVITV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34262 # 1svb.141.323 read from T0506.t04.many.frag # found chain 1svb in template set T0506 141 :DTRLYRLRT 1svb 324 :DTVVMEVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=34263 # 1qqqA.141.145 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 143 :RLYRLRT 1qqqA 148 :AFFQFYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34264 # 1uasA.141.352 read from T0506.t04.many.frag # found chain 1uasA in training set T0506 141 :DTRLYRLRT 1uasA 353 :DCKMYVLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34265 1b35C expands to /projects/compbio/data/pdb/1b35.pdb.gz 1b35C:# 1b35C.141.209 read from T0506.t04.many.frag # adding 1b35C to template set # found chain 1b35C in template set Warning: unaligning (T0506)R143 (1b35C)G212 because Y (epsilon') conformation "forbidden" or filtered. T0506 141 :DT 1b35C 210 :VS T0506 144 :LYRLRT 1b35C 213 :IVRVEV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34267 # 1xksA.141.218 read from T0506.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)T142 (1xksA)S284 because L (left) conformation "forbidden" or filtered. T0506 141 :D 1xksA 283 :R T0506 143 :RLYRLRT 1xksA 285 :SFYSLTS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34269 # 1u5uA.141.299 read from T0506.t04.many.frag # found chain 1u5uA in template set Warning: unaligning (T0506)Y145 (1u5uA)A304 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R146 (1u5uA)K305 because P (beta_P) conformation "forbidden" or filtered. T0506 141 :DTRL 1u5uA 300 :WFDL T0506 147 :LRT 1u5uA 306 :VSI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34271 # 1i78A.141.216 read from T0506.t04.many.frag # found chain 1i78A in template set T0506 141 :DTRLYRLRT 1i78A 217 :GRITYRSKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34272 # 1hx6A.141.354 read from T0506.t04.many.frag # found chain 1hx6A in training set T0506 141 :DTRLYRLRT 1hx6A 356 :GNVGFVVNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34273 # 1vl7A.142.138 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)R143 (1vl7A)R128 because P (beta_P) conformation "forbidden" or filtered. T0506 142 :T 1vl7A 127 :F T0506 144 :LYRLRTE 1vl7A 129 :IFQLTPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34275 # 1ty9A.142.181 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R143 (1ty9A)C183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 142 :T 1ty9A 182 :Y T0506 144 :LYRL 1ty9A 184 :VFEL T0506 150 :E 1ty9A 190 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=34278 # 2asfA.142.116 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 142 :TRLYRLRTE 2asfA 117 :RVVIEVQIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34279 # 1c8uA.142.242 read from T0506.t04.many.frag # found chain 1c8uA in template set T0506 142 :TRLYRLRTE 1c8uA 244 :WLLYSVEST Number of specific fragments extracted= 1 number of extra gaps= 0 total=34280 # 1xhnA.142.150 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 142 :TRLYRLRTE 1xhnA 151 :WFFAKLNIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34281 # 2furA.142.149 read from T0506.t04.many.frag # found chain 2furA in template set T0506 142 :TRLYRLRTE 2furA 149 :VFVFAVKPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34282 # 1ahsA.142.114 read from T0506.t04.many.frag # found chain 1ahsA in template set T0506 142 :TRLYRLRTE 1ahsA 240 :RSILQFEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34283 # 1wubA.142.76 read from T0506.t04.many.frag # found chain 1wubA in training set T0506 142 :TRLYRLRTE 1wubA 77 :YPEIRFVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=34284 # 1zsoA.142.101 read from T0506.t04.many.frag # found chain 1zsoA in template set T0506 142 :TRLYRLRTE 1zsoA 94 :RDFASFECR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34285 # 1rc6A.142.58 read from T0506.t04.many.frag # found chain 1rc6A in template set T0506 142 :TRLYRLRTE 1rc6A 1059 :FVDYLVTLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34286 # 1vajA.142.180 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)L147 (1vajA)F186 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :TRLYR 1vajA 181 :TKVYK T0506 148 :RTE 1vajA 187 :TAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34288 # 1uwcA.142.47 read from T0506.t04.many.frag # found chain 1uwcA in training set Warning: unaligning (T0506)L144 (1uwcA)G50 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T149 (1uwcA)D55 because D (zeta) conformation "forbidden" or filtered. T0506 142 :TR 1uwcA 48 :IN T0506 145 :YRLR 1uwcA 51 :WILR T0506 150 :E 1uwcA 56 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=34291 # 1flmA.142.107 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)R143 (1flmA)A109 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :T 1flmA 108 :R T0506 144 :LYRLRTE 1flmA 110 :ALVITVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34293 # 1q6uA.142.212 read from T0506.t04.many.frag # found chain 1q6uA in template set T0506 142 :TRLYRLRTE 1q6uA 213 :TLVFDVELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34294 # 1nlfA.142.230 read from T0506.t04.many.frag # found chain 1nlfA in template set T0506 142 :TRLYRLRTE 1nlfA 231 :RFFVRFGVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34295 # 1qhdA.142.319 read from T0506.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)L144 (1qhdA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :TR 1qhdA 319 :TV T0506 145 :YRLRTE 1qhdA 322 :LTLRIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34297 # 1b35C.142.210 read from T0506.t04.many.frag # found chain 1b35C in template set Warning: unaligning (T0506)R143 (1b35C)G212 because Y (epsilon') conformation "forbidden" or filtered. T0506 142 :T 1b35C 211 :S T0506 144 :LYRLRTE 1b35C 213 :IVRVEVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34299 # 1zkoA.142.106 read from T0506.t04.many.frag # found chain 1zkoA in template set T0506 142 :TRLYRLRTE 1zkoA 95 :GWLFKMEIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34300 # 1oruA.142.159 read from T0506.t04.many.frag # found chain 1oruA in training set Warning: unaligning (T0506)L144 (1oruA)G159 because S (epsilon) conformation "forbidden" or filtered. T0506 142 :TR 1oruA 157 :IR T0506 145 :YRLRTE 1oruA 160 :IVCIVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34302 # 1qqqA.142.146 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)H147 T0506 143 :RLYRLRTE 1qqqA 148 :AFFQFYVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34303 # 1xipA.142.245 read from T0506.t04.many.frag # found chain 1xipA in template set T0506 142 :TRLYRLRTE 1xipA 245 :QKMYIIKHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34304 # 1xqbA.142.99 read from T0506.t04.many.frag # found chain 1xqbA in template set T0506 142 :TRLYRLRTE 1xqbA 100 :LGMSKVELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34305 # 1svb.142.324 read from T0506.t04.many.frag # found chain 1svb in template set T0506 142 :TRLYRLRTE 1svb 325 :TVVMEVTFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34306 # 1ujcA.142.130 read from T0506.t04.many.frag # found chain 1ujcA in template set Warning: unaligning (T0506)T142 (1ujcA)S131 because T (delta_L) conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1ujcA 132 :AIASVTLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34307 # 1y12A.142.124 read from T0506.t04.many.frag # found chain 1y12A in template set T0506 142 :TRLYRLRTE 1y12A 122 :TENVTLNFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34308 # 1rz2A.142.171 read from T0506.t04.many.frag # found chain 1rz2A in training set T0506 142 :TRLYRLRTE 1rz2A 172 :FEGYDLEVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=34309 # 1ia9A.142.73 read from T0506.t04.many.frag # found chain 1ia9A in template set T0506 142 :TRLYRLRTE 1ia9A 1622 :RRAVKVLCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34310 # 1uasA.142.353 read from T0506.t04.many.frag # found chain 1uasA in training set Warning: unaligning (T0506)E150 because last residue in template chain is (1uasA)N362 T0506 142 :TRLYRLRT 1uasA 354 :CKMYVLTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34311 # 1uscA.142.130 read from T0506.t04.many.frag # found chain 1uscA in training set T0506 142 :TRLYRLRTE 1uscA 131 :HDLFVGRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34312 # 1u5xA.142.4 read from T0506.t04.many.frag # found chain 1u5xA in training set T0506 142 :TRLYRLRTE 1u5xA 106 :HSVLHLVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34313 # 1vl7A.143.139 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G151 (1vl7A)E136 because E (beta_S) conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1vl7A 128 :RIFQLTPK Number of specific fragments extracted= 1 number of extra gaps= 1 total=34314 # 1xhnA.143.151 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 143 :RLYRLRTEG 1xhnA 152 :FFAKLNITN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34315 # 1ty9A.143.182 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 143 :RLYRL 1ty9A 183 :CVFEL T0506 150 :EG 1ty9A 190 :ES Number of specific fragments extracted= 2 number of extra gaps= 1 total=34317 # 2asfA.143.117 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 143 :RLYRLRTEG 2asfA 118 :VVIEVQIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=34318 # 1c8uA.143.243 read from T0506.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0506)G151 (1c8uA)S253 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1c8uA 245 :LLYSVEST Number of specific fragments extracted= 1 number of extra gaps= 1 total=34319 # 2furA.143.150 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 2furA 150 :FVFAVKPE Number of specific fragments extracted= 1 number of extra gaps= 1 total=34320 # 1flmA.143.108 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 143 :RLYRLRTEG 1flmA 109 :AALVITVVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34321 # 1wubA.143.77 read from T0506.t04.many.frag # found chain 1wubA in training set T0506 143 :RLYRLRTEG 1wubA 78 :PEIRFVSTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34322 # 1zsoA.143.102 read from T0506.t04.many.frag # found chain 1zsoA in template set T0506 143 :RLYRLRTEG 1zsoA 95 :DFASFECRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34323 # 1rz2A.143.172 read from T0506.t04.many.frag # found chain 1rz2A in training set T0506 143 :RLYRLRTEG 1rz2A 173 :EGYDLEVFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34324 # 1ahsA.143.115 read from T0506.t04.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)R143 (1ahsA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTEG 1ahsA 242 :ILQFEVLW Number of specific fragments extracted= 1 number of extra gaps= 1 total=34325 # 1nlfA.143.231 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :RLYRL 1nlfA 232 :FFVRF T0506 149 :TEG 1nlfA 238 :VSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34327 # 1qhdA.143.320 read from T0506.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)L144 (1qhdA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :R 1qhdA 320 :V T0506 145 :YRLRTEG 1qhdA 322 :LTLRIES Number of specific fragments extracted= 2 number of extra gaps= 1 total=34329 # 1q6uA.143.213 read from T0506.t04.many.frag # found chain 1q6uA in template set T0506 143 :RLYRLRTEG 1q6uA 214 :LVFDVELLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34330 # 1rc6A.143.59 read from T0506.t04.many.frag # found chain 1rc6A in template set Warning: unaligning (T0506)G151 (1rc6A)Q1068 because P (beta_P) conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1rc6A 1060 :VDYLVTLH Number of specific fragments extracted= 1 number of extra gaps= 1 total=34331 # 1oruA.143.160 read from T0506.t04.many.frag # found chain 1oruA in training set T0506 143 :RLYRLRTEG 1oruA 158 :RGIVCIVER Number of specific fragments extracted= 1 number of extra gaps= 0 total=34332 # 1y12A.143.125 read from T0506.t04.many.frag # found chain 1y12A in template set Warning: unaligning (T0506)G151 (1y12A)Q131 because E (beta_S) conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1y12A 123 :ENVTLNFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34333 # 1u5xA.143.5 read from T0506.t04.many.frag # found chain 1u5xA in training set Warning: unaligning (T0506)G151 (1u5xA)N115 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :RLYRLRTE 1u5xA 107 :SVLHLVPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34334 # 1qcsA.143.146 read from T0506.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0506)R146 (1qcsA)G146 because P (beta_P) conformation "forbidden" or filtered. T0506 143 :RLY 1qcsA 143 :KLF T0506 147 :LRTEG 1qcsA 147 :LLVKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34336 # 2aneA.143.77 read from T0506.t04.many.frag # found chain 2aneA in template set T0506 143 :RLYRLRTEG 2aneA 71 :VGTVASILQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34337 # 1xqbA.143.100 read from T0506.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0506)R146 (1xqbA)K104 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1xqbA)Q109 because E (beta_S) conformation "forbidden" or filtered. T0506 143 :RLY 1xqbA 101 :GMS T0506 147 :LRTE 1xqbA 105 :VELR Number of specific fragments extracted= 2 number of extra gaps= 2 total=34339 # 1b35C.143.211 read from T0506.t04.many.frag # found chain 1b35C in template set Warning: unaligning (T0506)R143 (1b35C)G212 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTEG 1b35C 213 :IVRVEVLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=34340 # 1zkoA.143.107 read from T0506.t04.many.frag # found chain 1zkoA in template set T0506 143 :RLYRLRTEG 1zkoA 96 :WLFKMEISD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34341 # 1wlfA.143.148 read from T0506.t04.many.frag # found chain 1wlfA in template set T0506 143 :RLYRLRTEG 1wlfA 151 :TYIFIQIVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34342 # 1uscA.143.115 read from T0506.t04.many.frag # found chain 1uscA in training set Warning: unaligning (T0506)L144 (1uscA)A117 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1uscA)E124 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :R 1uscA 116 :A T0506 145 :YRLRTE 1uscA 118 :YELELL Number of specific fragments extracted= 2 number of extra gaps= 2 total=34344 # 1vpsA.143.247 read from T0506.t04.many.frag # found chain 1vpsA in template set Warning: unaligning (T0506)R146 (1vpsA)C282 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1vpsA)G287 because S (epsilon) conformation "forbidden" or filtered. T0506 143 :RLY 1vpsA 279 :YLS T0506 147 :LRTE 1vpsA 283 :VDIM Number of specific fragments extracted= 2 number of extra gaps= 2 total=34346 # 1vajA.143.181 read from T0506.t04.many.frag # found chain 1vajA in template set Warning: unaligning (T0506)L147 (1vajA)F186 because Y (epsilon') conformation "forbidden" or filtered. T0506 143 :RLYR 1vajA 182 :KVYK T0506 148 :RTEG 1vajA 187 :TAEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34348 # 1uc2A.143.203 read from T0506.t04.many.frag # found chain 1uc2A in template set Warning: unaligning (T0506)R143 (1uc2A)F204 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1uc2A)K212 because E (beta_S) conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1uc2A 205 :LEVQVVD Number of specific fragments extracted= 1 number of extra gaps= 2 total=34349 # 1f60A.143.397 read from T0506.t04.many.frag # found chain 1f60A in training set T0506 143 :RLYRLRTEG 1f60A 398 :ALVKFVPSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34350 # 1svb.143.325 read from T0506.t04.many.frag # found chain 1svb in template set Warning: unaligning (T0506)Y145 (1svb)M328 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1svb)G334 because P (beta_P) conformation "forbidden" or filtered. T0506 143 :RL 1svb 326 :VV T0506 146 :RLRTE 1svb 329 :EVTFS Number of specific fragments extracted= 2 number of extra gaps= 2 total=34352 # 1vl7A.144.140 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 144 :LYRLRTEGV 1vl7A 129 :IFQLTPKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34353 # 1xhnA.144.152 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 144 :LYRLRTEGV 1xhnA 153 :FAKLNITNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34354 # 1ty9A.144.183 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 144 :LYRL 1ty9A 184 :VFEL T0506 150 :EGV 1ty9A 190 :ESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34356 # 2asfA.144.118 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G151 (2asfA)R126 because E (beta_S) conformation "forbidden" or filtered. T0506 144 :LYRLRTE 2asfA 119 :VIEVQIE T0506 152 :V 2asfA 127 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=34358 # 1c8uA.144.244 read from T0506.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0506)G151 (1c8uA)S253 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1c8uA 246 :LYSVEST T0506 152 :V 1c8uA 254 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=34360 # 2furA.144.151 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)R148 (2furA)K155 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LYRL 2furA 151 :VFAV T0506 149 :TEGV 2furA 156 :PETF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34362 # 1wubA.144.78 read from T0506.t04.many.frag # found chain 1wubA in training set T0506 144 :LYRLRTEGV 1wubA 79 :EIRFVSTQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34363 # 1flmA.144.109 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 144 :LYRLRTEGV 1flmA 110 :ALVITVVSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34364 # 1u5xA.144.6 read from T0506.t04.many.frag # found chain 1u5xA in training set Warning: unaligning (T0506)G151 (1u5xA)N115 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1u5xA 108 :VLHLVPV T0506 152 :V 1u5xA 116 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=34366 # 1rz2A.144.173 read from T0506.t04.many.frag # found chain 1rz2A in training set T0506 144 :LYRLRTEGV 1rz2A 174 :GYDLEVFSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34367 # 1qhdA.144.321 read from T0506.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)L144 (1qhdA)G321 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1qhdA 322 :LTLRIESA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34368 # 1zsoA.144.103 read from T0506.t04.many.frag # found chain 1zsoA in template set T0506 144 :LYRLRTEGV 1zsoA 96 :FASFECRGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34369 # 1nlfA.144.232 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1nlfA)K240 because E (beta_S) conformation "forbidden" or filtered. T0506 144 :LYRL 1nlfA 233 :FVRF T0506 149 :TE 1nlfA 238 :VS T0506 152 :V 1nlfA 241 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=34372 # 1ahsA.144.116 read from T0506.t04.many.frag # found chain 1ahsA in template set T0506 144 :LYRLRTEGV 1ahsA 242 :ILQFEVLWY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34373 # 1y12A.144.126 read from T0506.t04.many.frag # found chain 1y12A in template set T0506 144 :LYRLRTEGV 1y12A 124 :NVTLNFAQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34374 # 1qcsA.144.147 read from T0506.t04.many.frag # found chain 1qcsA in template set T0506 144 :LYRLRTEGV 1qcsA 144 :LFGLLVKDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34375 # 1q6uA.144.214 read from T0506.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0506)G151 (1q6uA)D222 because Y (epsilon') conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1q6uA 215 :VFDVELL T0506 152 :V 1q6uA 223 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=34377 # 1xqbA.144.101 read from T0506.t04.many.frag # found chain 1xqbA in template set Warning: unaligning (T0506)G151 (1xqbA)Q109 because E (beta_S) conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1xqbA 102 :MSKVELR T0506 152 :V 1xqbA 110 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=34379 # 1se8A.144.219 read from T0506.t04.many.frag # found chain 1se8A in training set T0506 144 :LYRLRTEGV 1se8A 220 :STRVEATRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34380 # 1rc6A.144.60 read from T0506.t04.many.frag # found chain 1rc6A in template set T0506 144 :LYRLRTEGV 1rc6A 1061 :DYLVTLHQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=34381 # 1d7pM.144.134 read from T0506.t04.many.frag # found chain 1d7pM in training set Warning: unaligning (T0506)G151 (1d7pM)S2312 because E (beta_S) conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1d7pM 2305 :YLRIHPQ T0506 152 :V 1d7pM 2313 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=34383 # 1je5A.144.166 read from T0506.t04.many.frag # found chain 1je5A in template set Warning: unaligning (T0506)L144 (1je5A)S167 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1je5A 168 :VKLQLESV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34384 # 2aneA.144.78 read from T0506.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0506)L144 (2aneA)G72 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 2aneA 73 :TVASILQM Number of specific fragments extracted= 1 number of extra gaps= 1 total=34385 # 1t6eX.144.204 read from T0506.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)G151 (1t6eX)S212 because E (beta_S) conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1t6eX 205 :AHYISAR T0506 152 :V 1t6eX 213 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=34387 # 1oruA.144.161 read from T0506.t04.many.frag # found chain 1oruA in training set T0506 144 :LYRLRTEGV 1oruA 159 :GIVCIVERP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34388 # 1wlfA.144.149 read from T0506.t04.many.frag # found chain 1wlfA in template set Warning: unaligning (T0506)R146 (1wlfA)F154 because P (beta_P) conformation "forbidden" or filtered. T0506 144 :LY 1wlfA 152 :YI T0506 147 :LRTEGV 1wlfA 155 :IQIVTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34390 1y71A expands to /projects/compbio/data/pdb/1y71.pdb.gz 1y71A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1y71A.144.33 read from T0506.t04.many.frag # adding 1y71A to template set # found chain 1y71A in template set Warning: unaligning (T0506)L144 (1y71A)S31 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1y71A)A38 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 1y71A 32 :YVVKVL T0506 152 :V 1y71A 39 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34392 # 2cxhA.144.113 read from T0506.t04.many.frag # found chain 2cxhA in template set T0506 144 :LYRLRTEGV 2cxhA 94 :IVSFIVKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34393 # 1u5uA.144.302 read from T0506.t04.many.frag # found chain 1u5uA in template set T0506 144 :LYRLRTEGV 1u5uA 303 :LAKVSIKTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34394 1wmmA expands to /projects/compbio/data/pdb/1wmm.pdb.gz 1wmmA:# 1wmmA.144.90 read from T0506.t04.many.frag # adding 1wmmA to template set # found chain 1wmmA in template set Warning: unaligning (T0506)G151 (1wmmA)K98 because E (beta_S) conformation "forbidden" or filtered. T0506 144 :LYRLRTE 1wmmA 91 :RVKIKPI T0506 152 :V 1wmmA 99 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=34396 # 1ty9A.145.184 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 145 :YRL 1ty9A 185 :FEL T0506 150 :EGVQ 1ty9A 190 :ESLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34398 # 1vl7A.145.141 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)Q153 (1vl7A)R138 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1vl7A 130 :FQLTPKEG Number of specific fragments extracted= 1 number of extra gaps= 1 total=34399 # 1xhnA.145.153 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 145 :YRLRTEGVQ 1xhnA 154 :AKLNITNIW Number of specific fragments extracted= 1 number of extra gaps= 0 total=34400 # 2asfA.145.119 read from T0506.t04.many.frag # found chain 2asfA in template set T0506 145 :YRLRTEGVQ 2asfA 120 :IEVQIERVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34401 # 2furA.145.152 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (2furA)S160 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 2furA 152 :FAVKPE T0506 152 :V 2furA 159 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=34403 # 1flmA.145.110 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G151 (1flmA)S117 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 1flmA 111 :LVITVV T0506 152 :VQ 1flmA 118 :AE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34405 # 1rz2A.145.174 read from T0506.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0506)Q153 (1rz2A)Y183 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1rz2A 175 :YDLEVFSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34406 # 1u5xA.145.7 read from T0506.t04.many.frag # found chain 1u5xA in training set T0506 145 :YRLRTEGVQ 1u5xA 109 :LHLVPVNIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34407 # 1qhdA.145.322 read from T0506.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)V152 (1qhdA)A329 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTEG 1qhdA 322 :LTLRIES T0506 153 :Q 1qhdA 330 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=34409 # 1wubA.145.79 read from T0506.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0506)G151 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 1wubA 80 :IRFVST T0506 152 :VQ 1wubA 87 :IE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34411 # 1se8A.145.220 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)G151 (1se8A)R227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1se8A)E229 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 1se8A 221 :TRVEAT T0506 152 :V 1se8A 228 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34413 # 1q6uA.145.215 read from T0506.t04.many.frag # found chain 1q6uA in template set T0506 145 :YRLRTEGVQ 1q6uA 216 :FDVELLDVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34414 # 1xqbA.145.102 read from T0506.t04.many.frag # found chain 1xqbA in template set T0506 145 :YRLRTEGVQ 1xqbA 103 :SKVELRQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34415 # 1je5A.145.167 read from T0506.t04.many.frag # found chain 1je5A in template set Warning: unaligning (T0506)R146 (1je5A)K169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1je5A)S174 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :Y 1je5A 168 :V T0506 147 :LRTE 1je5A 170 :LQLE T0506 152 :VQ 1je5A 175 :VM Number of specific fragments extracted= 3 number of extra gaps= 2 total=34418 # 1zsoA.145.104 read from T0506.t04.many.frag # found chain 1zsoA in template set T0506 145 :YRLRTEGVQ 1zsoA 97 :ASFECRGIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34419 # 1qcsA.145.148 read from T0506.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0506)R146 (1qcsA)G146 because P (beta_P) conformation "forbidden" or filtered. T0506 145 :Y 1qcsA 145 :F T0506 147 :LRTEGVQ 1qcsA 147 :LLVKDIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34421 # 1t6eX.145.205 read from T0506.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)L147 (1t6eX)I208 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YR 1t6eX 206 :HY T0506 148 :RTEGVQ 1t6eX 209 :SARSIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34423 # 1y12A.145.127 read from T0506.t04.many.frag # found chain 1y12A in template set T0506 145 :YRLRTEGVQ 1y12A 125 :VTLNFAQVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34424 # 1c8uA.145.245 read from T0506.t04.many.frag # found chain 1c8uA in template set Warning: unaligning (T0506)Q153 (1c8uA)S255 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1c8uA 247 :YSVESTSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34425 1mkaA expands to /projects/compbio/data/pdb/1mka.pdb.gz 1mkaA:# 1mkaA.145.125 read from T0506.t04.many.frag # adding 1mkaA to template set # found chain 1mkaA in template set Warning: unaligning (T0506)G151 (1mkaA)R132 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTE 1mkaA 126 :YRIHFK T0506 152 :VQ 1mkaA 133 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34427 # 1l6pA.145.45 read from T0506.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0506)Q153 (1l6pA)K54 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1l6pA 46 :IRITPEHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34428 # 1u9iA.145.217 read from T0506.t04.many.frag # found chain 1u9iA in template set T0506 145 :YRLRTEGVQ 1u9iA 218 :RTLEILKLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34429 # 1d7pM.145.135 read from T0506.t04.many.frag # found chain 1d7pM in training set Warning: unaligning (T0506)G151 (1d7pM)S2312 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)V152 (1d7pM)W2313 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 1d7pM 2306 :LRIHPQ T0506 153 :Q 1d7pM 2314 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=34431 # 2cxhA.145.114 read from T0506.t04.many.frag # found chain 2cxhA in template set Warning: unaligning (T0506)G151 (2cxhA)G101 because Y (epsilon') conformation "forbidden" or filtered. T0506 145 :YRLRTE 2cxhA 95 :VSFIVK T0506 152 :VQ 2cxhA 102 :VS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34433 # 1luzA.145.62 read from T0506.t04.many.frag # found chain 1luzA in training set Warning: unaligning (T0506)Q153 (1luzA)D71 because D (zeta) conformation "forbidden" or filtered. T0506 145 :YRLRTEGV 1luzA 63 :VKVKVIRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34434 # 1ahsA.145.117 read from T0506.t04.many.frag # found chain 1ahsA in template set Warning: unaligning (T0506)G151 (1ahsA)W249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 because last residue in template chain is (1ahsA)T251 T0506 145 :YRLRTE 1ahsA 243 :LQFEVL T0506 152 :V 1ahsA 250 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=34436 # 1nlfA.145.233 read from T0506.t04.many.frag # found chain 1nlfA in template set Warning: unaligning (T0506)R148 (1nlfA)G237 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1nlfA)K240 because E (beta_S) conformation "forbidden" or filtered. T0506 145 :YRL 1nlfA 234 :VRF T0506 149 :TE 1nlfA 238 :VS T0506 152 :VQ 1nlfA 241 :AN Number of specific fragments extracted= 3 number of extra gaps= 2 total=34439 # 1wlfA.145.150 read from T0506.t04.many.frag # found chain 1wlfA in template set T0506 145 :YRLRTEGVQ 1wlfA 153 :IFIQIVTLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34440 # 2aneA.145.79 read from T0506.t04.many.frag # found chain 2aneA in template set T0506 145 :YRLRTEGVQ 2aneA 73 :TVASILQML Number of specific fragments extracted= 1 number of extra gaps= 0 total=34441 # 2blnA.145.271 read from T0506.t04.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)Y145 (2blnA)G272 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 2blnA 273 :ALEIV T0506 152 :VQ 2blnA 279 :GQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=34443 # 1ty9A.146.185 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RL 1ty9A 186 :EL T0506 150 :E 1ty9A 190 :E T0506 152 :VQI 1ty9A 192 :LEF Number of specific fragments extracted= 3 number of extra gaps= 2 total=34446 # 1vl7A.146.142 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)R146 (1vl7A)Q131 because P (beta_P) conformation "forbidden" or filtered. T0506 147 :LRTEGVQI 1vl7A 132 :LTPKEGRF Number of specific fragments extracted= 1 number of extra gaps= 1 total=34447 # 1xhnA.146.154 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G151 (1xhnA)N160 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 1xhnA 155 :KLNIT T0506 152 :VQI 1xhnA 161 :IWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34449 # 1wubA.146.80 read from T0506.t04.many.frag # found chain 1wubA in training set T0506 146 :RLRTEGVQI 1wubA 81 :RFVSTQIEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34450 # 2asfA.146.120 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)G151 (2asfA)R126 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 2asfA 121 :EVQIE T0506 152 :VQI 2asfA 127 :VLG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34452 # 1qcsA.146.149 read from T0506.t04.many.frag # found chain 1qcsA in template set T0506 146 :RLRTEGVQI 1qcsA 146 :GLLVKDIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34453 # 1qhdA.146.323 read from T0506.t04.many.frag # found chain 1qhdA in template set T0506 146 :RLRTEGVQI 1qhdA 323 :TLRIESAVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=34454 # 1flmA.146.111 read from T0506.t04.many.frag # found chain 1flmA in training set T0506 146 :RLRTEGVQI 1flmA 112 :VITVVSAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=34455 # 1se8A.146.221 read from T0506.t04.many.frag # found chain 1se8A in training set T0506 146 :RLRTEGVQI 1se8A 222 :RVEATRVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34456 # 1je5A.146.168 read from T0506.t04.many.frag # found chain 1je5A in template set Warning: unaligning (T0506)G151 (1je5A)S174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1je5A)M176 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 1je5A 169 :KLQLE T0506 152 :V 1je5A 175 :V T0506 154 :I 1je5A 177 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=34459 # 1rz2A.146.175 read from T0506.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0506)G151 (1rz2A)S181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1rz2A)Y183 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTE 1rz2A 176 :DLEVF T0506 152 :V 1rz2A 182 :V T0506 154 :I 1rz2A 184 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=34462 # 1u5xA.146.8 read from T0506.t04.many.frag # found chain 1u5xA in training set T0506 146 :RLRTEGVQ 1u5xA 110 :HLVPVNIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34463 # 2furA.146.153 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTE 2furA 153 :AVKPE T0506 152 :VQI 2furA 159 :FSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34465 # 1mkaA.146.126 read from T0506.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0506)G151 (1mkaA)R132 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 1mkaA 127 :RIHFK T0506 152 :VQI 1mkaA 133 :IVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34467 # 1xqbA.146.103 read from T0506.t04.many.frag # found chain 1xqbA in template set T0506 146 :RLRTEGVQI 1xqbA 104 :KVELRQVEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=34468 # 1t6eX.146.206 read from T0506.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)G151 (1t6eX)S212 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTE 1t6eX 207 :YISAR T0506 152 :VQI 1t6eX 213 :IVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34470 # 1zsoA.146.105 read from T0506.t04.many.frag # found chain 1zsoA in template set T0506 146 :RLRTEGVQI 1zsoA 98 :SFECRGIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34471 # 1q6uA.146.216 read from T0506.t04.many.frag # found chain 1q6uA in template set Warning: unaligning (T0506)G151 (1q6uA)D222 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTE 1q6uA 217 :DVELL T0506 152 :VQI 1q6uA 223 :VKP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34473 # 1mw9X.146.457 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 146 :RLRTEGVQI 1mw9X 458 :ALTLVELTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34474 # 1ysjA.146.251 read from T0506.t04.many.frag # found chain 1ysjA in template set T0506 146 :RLRTEGVQI 1ysjA 228 :VVSITRVQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34475 # 2blnA.146.272 read from T0506.t04.many.frag # found chain 2blnA in template set T0506 146 :RLRTEGVQI 2blnA 273 :ALEIVTGQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34476 # 1l6pA.146.46 read from T0506.t04.many.frag # found chain 1l6pA in training set T0506 146 :RLRTEGVQI 1l6pA 47 :RITPEHAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34477 # 2cxhA.146.115 read from T0506.t04.many.frag # found chain 2cxhA in template set Warning: unaligning (T0506)G151 (2cxhA)G101 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTE 2cxhA 96 :SFIVK T0506 152 :VQI 2cxhA 102 :VSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34479 # 1u9iA.146.218 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)G151 (1u9iA)K224 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTE 1u9iA 219 :TLEIL T0506 152 :VQI 1u9iA 225 :LRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34481 # 1sr9A.146.547 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)G151 (1sr9A)D553 because Y (epsilon') conformation "forbidden" or filtered. T0506 146 :RLRTE 1sr9A 548 :DVAVL T0506 152 :VQI 1sr9A 554 :YYE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34483 # 2ahmE.146.157 read from T0506.t04.many.frag # found chain 2ahmE in template set T0506 146 :RLRTEGVQI 2ahmE 158 :LWEIQQVVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34484 # 1y12A.146.128 read from T0506.t04.many.frag # found chain 1y12A in template set T0506 146 :RLRTEGVQI 1y12A 126 :TLNFAQVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34485 # 2aneA.146.80 read from T0506.t04.many.frag # found chain 2aneA in template set Warning: unaligning (T0506)Q153 (2aneA)L81 because E (beta_S) conformation "forbidden" or filtered. T0506 146 :RLRTEGV 2aneA 74 :VASILQM T0506 154 :I 2aneA 82 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=34487 # 1jh6A.146.70 read from T0506.t04.many.frag # found chain 1jh6A in training set T0506 146 :RLRTEGVQI 1jh6A 71 :TATVDRVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=34488 # 1luzA.146.63 read from T0506.t04.many.frag # found chain 1luzA in training set T0506 146 :RLRTEGVQI 1luzA 64 :KVKVIRVDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=34489 # 1xhnA.147.155 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 147 :LRTEGVQIN 1xhnA 156 :LNITNIWVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34490 # 1t6eX.147.207 read from T0506.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)L147 (1t6eX)I208 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1t6eX)G216 because S (epsilon) conformation "forbidden" or filtered. T0506 148 :RTEGVQI 1t6eX 209 :SARSIVV Number of specific fragments extracted= 1 number of extra gaps= 2 total=34491 # 1je5A.147.169 read from T0506.t04.many.frag # found chain 1je5A in template set T0506 147 :LRTEGVQIN 1je5A 170 :LQLESVMLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34492 # 1qcsA.147.150 read from T0506.t04.many.frag # found chain 1qcsA in template set T0506 147 :LRTEGVQIN 1qcsA 147 :LLVKDIEAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34493 # 1ty9A.147.186 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 T0506 147 :L 1ty9A 187 :L T0506 150 :EGVQIN 1ty9A 190 :ESLEFW Number of specific fragments extracted= 2 number of extra gaps= 1 total=34495 # 1wubA.147.81 read from T0506.t04.many.frag # found chain 1wubA in training set T0506 147 :LRTEGVQIN 1wubA 82 :FVSTQIEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34496 # 2asfA.147.121 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)I154 (2asfA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTEGVQ 2asfA 122 :VQIERVL T0506 155 :N 2asfA 130 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=34498 # 1se8A.147.222 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)G151 (1se8A)R227 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTE 1se8A 223 :VEAT T0506 152 :VQIN 1se8A 228 :VEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34500 # 1qhdA.147.324 read from T0506.t04.many.frag # found chain 1qhdA in template set T0506 147 :LRTEGVQIN 1qhdA 324 :LRIESAVCE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34501 # 1vl7A.147.143 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G151 (1vl7A)E136 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTE 1vl7A 132 :LTPK T0506 152 :VQIN 1vl7A 137 :GRFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=34503 # 1zsoA.147.106 read from T0506.t04.many.frag # found chain 1zsoA in template set Warning: unaligning (T0506)E150 (1zsoA)R102 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRT 1zsoA 99 :FEC T0506 151 :GVQIN 1zsoA 103 :GIELI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34505 2ai4A expands to /projects/compbio/data/pdb/2ai4.pdb.gz 2ai4A:Skipped atom 94, because occupancy 0.400 <= existing 0.600 in 2ai4A Skipped atom 98, because occupancy 0.400 <= existing 0.600 in 2ai4A Skipped atom 100, because occupancy 0.400 <= existing 0.600 in 2ai4A Skipped atom 102, because occupancy 0.400 <= existing 0.600 in 2ai4A Skipped atom 104, because occupancy 0.400 <= existing 0.600 in 2ai4A Skipped atom 106, because occupancy 0.400 <= existing 0.600 in 2ai4A Skipped atom 195, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 199, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 377, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 379, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 381, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 383, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 385, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 424, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 428, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 430, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 432, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 434, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 436, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 2ai4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 2ai4A Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 2ai4A # 2ai4A.147.60 read from T0506.t04.many.frag # adding 2ai4A to template set # found chain 2ai4A in template set T0506 147 :LRTEGVQIN 2ai4A 58 :LKFVGVGFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=34506 # 2furA.147.154 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)N155 (2furA)K162 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTEGVQI 2furA 154 :VKPETFSM Number of specific fragments extracted= 1 number of extra gaps= 1 total=34507 # 1flmA.147.112 read from T0506.t04.many.frag # found chain 1flmA in training set Warning: unaligning (T0506)G151 (1flmA)S117 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 1flmA 113 :ITVV T0506 152 :VQIN 1flmA 118 :AEQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34509 # 1sr9A.147.548 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)N155 (1sr9A)H557 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRTEGVQI 1sr9A 549 :VAVLDYYE Number of specific fragments extracted= 1 number of extra gaps= 1 total=34510 # 1mkaA.147.127 read from T0506.t04.many.frag # found chain 1mkaA in template set Warning: unaligning (T0506)G151 (1mkaA)R132 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)I154 (1mkaA)N135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1mkaA)R136 because P (beta_P) conformation "forbidden" or filtered. T0506 147 :LRTE 1mkaA 128 :IHFK T0506 152 :VQ 1mkaA 133 :IV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34512 # 1lla.147.390 read from T0506.t04.many.frag # found chain 1lla in template set T0506 147 :LRTEGVQIN 1lla 391 :IQVQDVTLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=34513 # 1rz2A.147.176 read from T0506.t04.many.frag # found chain 1rz2A in training set T0506 147 :LRTEGVQIN 1rz2A 177 :LEVFSVYTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34514 # 1mw9X.147.458 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 147 :LRTEGVQIN 1mw9X 459 :LTLVELTPA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34515 2cy5A expands to /projects/compbio/data/pdb/2cy5.pdb.gz 2cy5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cy5A.147.54 read from T0506.t04.many.frag # adding 2cy5A to template set # found chain 2cy5A in template set T0506 147 :LRTEGVQIN 2cy5A 80 :VSPSQVTLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34516 # 2ahmE.147.158 read from T0506.t04.many.frag # found chain 2ahmE in template set Warning: unaligning (T0506)G151 (2ahmE)Q163 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 2ahmE 159 :WEIQ T0506 152 :VQIN 2ahmE 164 :VVDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34518 # 2blnA.147.273 read from T0506.t04.many.frag # found chain 2blnA in template set T0506 147 :LRTEGVQIN 2blnA 274 :LEIVTGQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34519 # 1l6pA.147.47 read from T0506.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0506)E150 (1l6pA)E51 because E (beta_S) conformation "forbidden" or filtered. T0506 147 :LRT 1l6pA 48 :ITP T0506 151 :GVQIN 1l6pA 52 :HAKIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34521 # 1ysjA.147.252 read from T0506.t04.many.frag # found chain 1ysjA in template set T0506 147 :LRTEGVQIN 1ysjA 229 :VSITRVQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34522 # 1xqbA.147.104 read from T0506.t04.many.frag # found chain 1xqbA in template set T0506 147 :LRTEGVQIN 1xqbA 105 :VELRQVECI Number of specific fragments extracted= 1 number of extra gaps= 0 total=34523 # 1u5xA.147.9 read from T0506.t04.many.frag # found chain 1u5xA in training set Warning: unaligning (T0506)G151 (1u5xA)N115 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :LRTE 1u5xA 111 :LVPV T0506 152 :VQ 1u5xA 116 :IT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34525 # 1v4pA.147.129 read from T0506.t04.many.frag # found chain 1v4pA in training set T0506 147 :LRTEGVQIN 1v4pA 130 :IKIRKVRFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34526 1dynA expands to /projects/compbio/data/pdb/1dyn.pdb.gz 1dynA:# 1dynA.147.36 read from T0506.t04.many.frag # adding 1dynA to template set # found chain 1dynA in template set Warning: unaligning (T0506)R148 (1dynA)T38 because Y (epsilon') conformation "forbidden" or filtered. T0506 147 :L 1dynA 37 :L T0506 149 :TEGVQIN 1dynA 39 :AENLSWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=34528 # 1tueB.147.138 read from T0506.t04.many.frag # found chain 1tueB in template set T0506 147 :LRTEGVQIN 1tueB 136 :VAWDSVYYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34529 # 1t0bA.147.149 read from T0506.t04.many.frag # found chain 1t0bA in training set Warning: unaligning (T0506)V152 (1t0bA)E152 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t0bA)Y155 Warning: unaligning (T0506)N155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t0bA)Y155 T0506 147 :LRTEG 1t0bA 147 :IELEQ T0506 153 :Q 1t0bA 153 :E Number of specific fragments extracted= 2 number of extra gaps= 2 total=34531 # 1xhnA.148.156 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G151 (1xhnA)N160 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTE 1xhnA 157 :NIT T0506 152 :VQING 1xhnA 161 :IWVLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34533 # 1je5A.148.170 read from T0506.t04.many.frag # found chain 1je5A in template set T0506 148 :RTEGVQING 1je5A 171 :QLESVMLVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34534 # 2ai4A.148.61 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)G156 (2ai4A)T67 because D (zeta) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 2ai4A 59 :KFVGVGFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=34535 # 1t6eX.148.208 read from T0506.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)N155 (1t6eX)G216 because S (epsilon) conformation "forbidden" or filtered. T0506 148 :RTEGVQI 1t6eX 209 :SARSIVV T0506 156 :G 1t6eX 217 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=34537 # 1qcsA.148.151 read from T0506.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0506)N155 (1qcsA)M155 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1qcsA)D156 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTEGVQI 1qcsA 148 :LVKDIEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34538 # 1zsoA.148.107 read from T0506.t04.many.frag # found chain 1zsoA in template set T0506 148 :RTEGVQING 1zsoA 100 :ECRGIELID Number of specific fragments extracted= 1 number of extra gaps= 0 total=34539 # 1ty9A.148.187 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)R148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ty9A)L189 Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1ty9A)E193 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :E 1ty9A 190 :E T0506 152 :V 1ty9A 192 :L T0506 154 :ING 1ty9A 194 :FWG Number of specific fragments extracted= 3 number of extra gaps= 3 total=34542 # 2cy5A.148.55 read from T0506.t04.many.frag # found chain 2cy5A in template set T0506 148 :RTEGVQING 2cy5A 81 :SPSQVTLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34543 # 1vl7A.148.144 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)Q153 (1vl7A)R138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1vl7A)I141 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTEGV 1vl7A 133 :TPKEG T0506 154 :IN 1vl7A 139 :FV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34545 # 1nmoA.148.163 read from T0506.t04.many.frag # found chain 1nmoA in template set T0506 148 :RTEGVQING 1nmoA 164 :VVQRVAWCT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34546 # 1e4fT.148.226 read from T0506.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)G151 (1e4fT)K230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1e4fT)S232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I154 (1e4fT)Y233 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTE 1e4fT 227 :VPI T0506 152 :V 1e4fT 231 :I T0506 155 :NG 1e4fT 234 :VP Number of specific fragments extracted= 3 number of extra gaps= 2 total=34549 # 1se8A.148.223 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)G156 (1se8A)A232 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1se8A 224 :EATRVEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=34550 # 1xv2A.148.119 read from T0506.t04.many.frag # found chain 1xv2A in template set Warning: unaligning (T0506)G156 (1xv2A)M125 because D (zeta) conformation "forbidden" or filtered. T0506 148 :RTEGVQIN 1xv2A 117 :TFKHMHVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=34551 # 1dynA.148.37 read from T0506.t04.many.frag # found chain 1dynA in template set T0506 148 :RTEGVQING 1dynA 38 :TAENLSWYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34552 # 1wubA.148.82 read from T0506.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0506)G151 (1wubA)Q86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0506 148 :RTE 1wubA 83 :VST T0506 152 :VQIN 1wubA 87 :IEPL Number of specific fragments extracted= 2 number of extra gaps= 2 total=34554 # 1qhdA.148.325 read from T0506.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)G151 (1qhdA)S328 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1qhdA)V330 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTE 1qhdA 325 :RIE T0506 152 :V 1qhdA 329 :A T0506 154 :ING 1qhdA 331 :CES Number of specific fragments extracted= 3 number of extra gaps= 2 total=34557 # 1sr9A.148.549 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)G151 (1sr9A)D553 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1sr9A)A558 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTE 1sr9A 550 :AVL T0506 152 :VQIN 1sr9A 554 :YYEH Number of specific fragments extracted= 2 number of extra gaps= 2 total=34559 # 1lla.148.391 read from T0506.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0506)G151 (1lla)D395 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1lla)A400 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTE 1lla 392 :QVQ T0506 152 :VQIN 1lla 396 :VTLH Number of specific fragments extracted= 2 number of extra gaps= 2 total=34561 # 1iq4A.148.29 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 148 :RTEGVQING 1iq4A 30 :KIEKIVINM Number of specific fragments extracted= 1 number of extra gaps= 0 total=34562 # 1tueB.148.139 read from T0506.t04.many.frag # found chain 1tueB in template set Warning: unaligning (T0506)N155 (1tueB)M144 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTEGVQI 1tueB 137 :AWDSVYY T0506 156 :G 1tueB 145 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34564 # 2blnA.148.274 read from T0506.t04.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)Q153 (2blnA)Q280 because E (beta_S) conformation "forbidden" or filtered. T0506 148 :RTEGV 2blnA 275 :EIVTG T0506 154 :ING 2blnA 281 :AGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34566 # 2asfA.148.122 read from T0506.t04.many.frag # found chain 2asfA in template set Warning: unaligning (T0506)I154 (2asfA)G129 because Y (epsilon') conformation "forbidden" or filtered. T0506 148 :RTEGVQ 2asfA 123 :QIERVL T0506 155 :NG 2asfA 130 :SA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34568 # 1xubA.148.130 read from T0506.t04.many.frag # found chain 1xubA in training set Warning: unaligning (T0506)G151 (1xubA)A114 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1xubA)Q119 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTE 1xubA 111 :SVI T0506 152 :VQIN 1xubA 115 :ASMD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34570 # 1nbcA.148.53 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)G151 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1nbcA)G62 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTE 1nbcA 54 :WCD T0506 152 :V 1nbcA 58 :A T0506 154 :IN 1nbcA 60 :II Number of specific fragments extracted= 3 number of extra gaps= 3 total=34573 # 2furA.148.155 read from T0506.t04.many.frag # found chain 2furA in template set Warning: unaligning (T0506)G151 (2furA)T158 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (2furA)K162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 because of BadResidue code BAD_PEPTIDE in next template residue (2furA)R164 T0506 148 :RTE 2furA 155 :KPE T0506 152 :VQI 2furA 159 :FSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=34575 # 1rz2A.148.177 read from T0506.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0506)Q153 (1rz2A)Y183 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1rz2A)T185 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTEGV 1rz2A 178 :EVFSV T0506 154 :I 1rz2A 184 :T T0506 156 :G 1rz2A 186 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=34578 # 1ysjA.148.253 read from T0506.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0506)G151 (1ysjA)R233 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1ysjA)G237 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1ysjA)T238 because G (3-10) conformation "forbidden" or filtered. T0506 148 :RTE 1ysjA 230 :SIT T0506 152 :VQI 1ysjA 234 :VQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=34580 # 2ahmE.148.159 read from T0506.t04.many.frag # found chain 2ahmE in template set Warning: unaligning (T0506)G151 (2ahmE)Q163 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (2ahmE)D168 because G (3-10) conformation "forbidden" or filtered. T0506 148 :RTE 2ahmE 160 :EIQ T0506 152 :VQIN 2ahmE 164 :VVDA Number of specific fragments extracted= 2 number of extra gaps= 2 total=34582 # 1l6pA.148.48 read from T0506.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0506)N155 (1l6pA)A56 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTEGVQI 1l6pA 49 :TPEHAKI T0506 156 :G 1l6pA 57 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=34584 # 1mw9X.148.459 read from T0506.t04.many.frag # found chain 1mw9X in training set Warning: unaligning (T0506)G151 (1mw9X)E463 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1mw9X)T465 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1mw9X)Q468 because P (beta_P) conformation "forbidden" or filtered. T0506 148 :RTE 1mw9X 460 :TLV T0506 152 :V 1mw9X 464 :L T0506 154 :IN 1mw9X 466 :PA Number of specific fragments extracted= 3 number of extra gaps= 3 total=34587 # 1xhnA.149.157 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G151 (1xhnA)N160 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1xhnA)W162 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TE 1xhnA 158 :IT T0506 152 :V 1xhnA 161 :I T0506 154 :IN 1xhnA 163 :VL Number of specific fragments extracted= 3 number of extra gaps= 3 total=34590 # 1je5A.149.171 read from T0506.t04.many.frag # found chain 1je5A in template set Warning: unaligning (T0506)G151 (1je5A)S174 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TE 1je5A 172 :LE T0506 152 :VQINGG 1je5A 175 :VMLVEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34592 # 2cy5A.149.56 read from T0506.t04.many.frag # found chain 2cy5A in template set T0506 149 :TEGVQINGG 2cy5A 82 :PSQVTLLDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34593 # 2ai4A.149.62 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)G151 (2ai4A)G62 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (2ai4A)T67 because D (zeta) conformation "forbidden" or filtered. T0506 149 :TE 2ai4A 60 :FV T0506 152 :VQIN 2ai4A 63 :VGFV T0506 157 :G 2ai4A 68 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=34596 # 1t6eX.149.209 read from T0506.t04.many.frag # found chain 1t6eX in training set T0506 149 :TEGVQINGG 1t6eX 210 :ARSIVVGDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=34597 # 1qcsA.149.152 read from T0506.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0506)G151 (1qcsA)D151 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TE 1qcsA 149 :VK T0506 152 :VQINGG 1qcsA 152 :IEAMDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34599 # 1tueB.149.140 read from T0506.t04.many.frag # found chain 1tueB in template set T0506 149 :TEGVQINGG 1tueB 138 :WDSVYYMTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34600 # 1ty9A.149.188 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)T149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ty9A)L189 Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1ty9A)W195 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :E 1ty9A 190 :E T0506 152 :VQI 1ty9A 192 :LEF T0506 156 :GG 1ty9A 196 :GN Number of specific fragments extracted= 3 number of extra gaps= 3 total=34603 # 1nmoA.149.164 read from T0506.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)N155 (1nmoA)C171 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TEGVQI 1nmoA 165 :VQRVAW T0506 156 :GG 1nmoA 172 :TG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34605 # 1xv2A.149.120 read from T0506.t04.many.frag # found chain 1xv2A in template set Warning: unaligning (T0506)G151 (1xv2A)H120 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TE 1xv2A 118 :FK T0506 152 :VQINGG 1xv2A 121 :MHVRMM Number of specific fragments extracted= 2 number of extra gaps= 1 total=34607 # 1dynA.149.38 read from T0506.t04.many.frag # found chain 1dynA in template set Warning: unaligning (T0506)G151 (1dynA)N41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1dynA)D47 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TE 1dynA 39 :AE T0506 152 :VQING 1dynA 42 :LSWYK Number of specific fragments extracted= 2 number of extra gaps= 2 total=34609 # 1zsoA.149.108 read from T0506.t04.many.frag # found chain 1zsoA in template set Warning: unaligning (T0506)E150 (1zsoA)R102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1zsoA)F109 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :T 1zsoA 101 :C T0506 151 :GVQING 1zsoA 103 :GIELID Number of specific fragments extracted= 2 number of extra gaps= 2 total=34611 # 1e4fT.149.227 read from T0506.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)Q153 (1e4fT)S232 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1e4fT)P235 because N (gamma') conformation "forbidden" or filtered. T0506 149 :TEGV 1e4fT 228 :PIKI T0506 154 :IN 1e4fT 233 :YV T0506 157 :G 1e4fT 236 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=34614 # 1qhdA.149.326 read from T0506.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)G157 (1qhdA)V334 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TEGVQING 1qhdA 326 :IESAVCES Number of specific fragments extracted= 1 number of extra gaps= 1 total=34615 # 1sr9A.149.550 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)G157 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sr9A)S560 T0506 149 :TEGVQING 1sr9A 551 :VLDYYEHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=34616 # 1se8A.149.224 read from T0506.t04.many.frag # found chain 1se8A in training set Warning: unaligning (T0506)N155 (1se8A)L231 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 because last residue in template chain is (1se8A)R233 T0506 149 :TEGVQI 1se8A 225 :ATRVEA T0506 156 :G 1se8A 232 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=34618 1gesA expands to /projects/compbio/data/pdb/1ges.pdb.gz 1gesA:Skipped atom 2956, because occupancy 0.500 <= existing 0.500 in 1gesA # 1gesA.149.401 read from T0506.t04.many.frag # adding 1gesA to template set # found chain 1gesA in template set Warning: unaligning (T0506)G156 (1gesA)G409 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1gesA 402 :IVGIHGI T0506 157 :G 1gesA 410 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=34620 # 1vl7A.149.145 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 149 :TEGVQINGG 1vl7A 134 :PKEGRFVIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34621 # 2blnA.149.275 read from T0506.t04.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)G156 (2blnA)D283 because G (3-10) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 2blnA 276 :IVTGQAG T0506 157 :G 2blnA 284 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=34623 # 1rz2A.149.178 read from T0506.t04.many.frag # found chain 1rz2A in training set Warning: unaligning (T0506)G151 (1rz2A)S181 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1rz2A)Y183 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TE 1rz2A 179 :VF T0506 152 :V 1rz2A 182 :V T0506 154 :INGG 1rz2A 184 :TTTT Number of specific fragments extracted= 3 number of extra gaps= 2 total=34626 # 1wubA.149.83 read from T0506.t04.many.frag # found chain 1wubA in training set Warning: unaligning (T0506)G156 (1wubA)G91 because S (epsilon) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1wubA 84 :STQIEPL T0506 157 :G 1wubA 92 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=34628 # 1iq4A.149.30 read from T0506.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0506)G151 (1iq4A)K33 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1iq4A)M38 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1iq4A)G39 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TE 1iq4A 31 :IE T0506 152 :VQIN 1iq4A 34 :IVIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=34630 # 1nbcA.149.54 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)G151 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TE 1nbcA 55 :CD T0506 152 :V 1nbcA 58 :A T0506 154 :INGG 1nbcA 60 :IIGS Number of specific fragments extracted= 3 number of extra gaps= 2 total=34633 # 2ahmE.149.160 read from T0506.t04.many.frag # found chain 2ahmE in template set Warning: unaligning (T0506)G151 (2ahmE)Q163 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (2ahmE)D168 because G (3-10) conformation "forbidden" or filtered. T0506 149 :TE 2ahmE 161 :IQ T0506 152 :VQIN 2ahmE 164 :VVDA T0506 157 :G 2ahmE 169 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=34636 # 1tvxA.149.23 read from T0506.t04.many.frag # found chain 1tvxA in training set T0506 149 :TEGVQINGG 1tvxA 39 :IQSLEVIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=34637 # 1xubA.149.131 read from T0506.t04.many.frag # found chain 1xubA in training set Warning: unaligning (T0506)G156 (1xubA)Q119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xubA)P120 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TEGVQIN 1xubA 112 :VIAASMD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34638 # 1lla.149.392 read from T0506.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0506)G151 (1lla)D395 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1lla)T397 because E (beta_S) conformation "forbidden" or filtered. T0506 149 :TE 1lla 393 :VQ T0506 152 :V 1lla 396 :V T0506 154 :INGG 1lla 398 :LHAR Number of specific fragments extracted= 3 number of extra gaps= 2 total=34641 # 1xksA.149.229 read from T0506.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)N155 (1xksA)D300 because Y (epsilon') conformation "forbidden" or filtered. T0506 149 :TEGVQI 1xksA 294 :ISKWEL T0506 156 :GG 1xksA 301 :DS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34643 # 1ysjA.149.254 read from T0506.t04.many.frag # found chain 1ysjA in template set Warning: unaligning (T0506)N155 (1ysjA)G237 because S (epsilon) conformation "forbidden" or filtered. T0506 149 :TEGVQI 1ysjA 231 :ITRVQA T0506 156 :GG 1ysjA 238 :TS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34645 # 1kmtA.149.8 read from T0506.t04.many.frag # found chain 1kmtA in training set Warning: unaligning (T0506)N155 (1kmtA)V78 because P (beta_P) conformation "forbidden" or filtered. T0506 149 :TEGVQI 1kmtA 72 :VTGLTL T0506 156 :GG 1kmtA 79 :CS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34647 # 1xhnA.150.158 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :EGVQIN 1xhnA 159 :TNIWVL T0506 158 :P 1xhnA 167 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=34649 # 2cy5A.150.57 read from T0506.t04.many.frag # found chain 2cy5A in template set Warning: unaligning (T0506)G151 (2cy5A)Q84 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (2cy5A)L88 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :E 2cy5A 83 :S T0506 152 :VQI 2cy5A 85 :VTL T0506 156 :GGP 2cy5A 89 :DPV Number of specific fragments extracted= 3 number of extra gaps= 2 total=34652 # 2ai4A.150.63 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. T0506 150 :EGVQINGG 2ai4A 61 :VGVGFVTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34653 # 1je5A.150.172 read from T0506.t04.many.frag # found chain 1je5A in template set Warning: unaligning (T0506)G151 (1je5A)S174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1je5A)L180 because P (beta_P) conformation "forbidden" or filtered. T0506 150 :E 1je5A 173 :E T0506 152 :VQING 1je5A 175 :VMLVE T0506 158 :P 1je5A 181 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=34656 # 1t6eX.150.210 read from T0506.t04.many.frag # found chain 1t6eX in training set Warning: unaligning (T0506)G151 (1t6eX)S212 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1t6eX)G216 because S (epsilon) conformation "forbidden" or filtered. T0506 150 :E 1t6eX 211 :R T0506 152 :VQI 1t6eX 213 :IVV T0506 156 :GGP 1t6eX 217 :DTR Number of specific fragments extracted= 3 number of extra gaps= 2 total=34659 # 1dynA.150.39 read from T0506.t04.many.frag # found chain 1dynA in template set T0506 150 :EGVQINGGP 1dynA 40 :ENLSWYKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34660 # 1xv2A.150.121 read from T0506.t04.many.frag # found chain 1xv2A in template set Warning: unaligning (T0506)G156 (1xv2A)M125 because D (zeta) conformation "forbidden" or filtered. T0506 150 :EGVQIN 1xv2A 119 :KHMHVR T0506 157 :GP 1xv2A 126 :MP Number of specific fragments extracted= 2 number of extra gaps= 1 total=34662 # 1nmoA.150.165 read from T0506.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)G151 (1nmoA)R167 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. T0506 150 :E 1nmoA 166 :Q T0506 152 :VQIN 1nmoA 168 :VAWC T0506 157 :GP 1nmoA 173 :GG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34665 # 1zsoA.150.109 read from T0506.t04.many.frag # found chain 1zsoA in template set Warning: unaligning (T0506)P158 (1zsoA)F110 because D (zeta) conformation "forbidden" or filtered. T0506 150 :EGVQINGG 1zsoA 102 :RGIELIDF Number of specific fragments extracted= 1 number of extra gaps= 1 total=34666 # 1qcsA.150.153 read from T0506.t04.many.frag # found chain 1qcsA in template set Warning: unaligning (T0506)G151 (1qcsA)D151 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1qcsA)D156 because P (beta_P) conformation "forbidden" or filtered. T0506 150 :E 1qcsA 150 :K T0506 152 :VQIN 1qcsA 152 :IEAM T0506 157 :GP 1qcsA 157 :PS Number of specific fragments extracted= 3 number of extra gaps= 2 total=34669 # 1ty9A.150.189 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)G151 (1ty9A)S191 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1ty9A)W195 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :E 1ty9A 190 :E T0506 152 :VQI 1ty9A 192 :LEF T0506 156 :GGP 1ty9A 196 :GNG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34672 # 1tueB.150.141 read from T0506.t04.many.frag # found chain 1tueB in template set Warning: unaligning (T0506)N155 (1tueB)M144 because P (beta_P) conformation "forbidden" or filtered. T0506 150 :EGVQI 1tueB 139 :DSVYY T0506 156 :GGP 1tueB 145 :TDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34674 # 1xksA.150.230 read from T0506.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)G157 (1xksA)S302 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1xksA)S303 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :EGVQING 1xksA 295 :SKWELDD Number of specific fragments extracted= 1 number of extra gaps= 1 total=34675 # 1tvxA.150.24 read from T0506.t04.many.frag # found chain 1tvxA in training set Warning: unaligning (T0506)P158 (1tvxA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :EGVQINGG 1tvxA 40 :QSLEVIGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=34676 # 1qhdA.150.327 read from T0506.t04.many.frag # found chain 1qhdA in template set Warning: unaligning (T0506)G151 (1qhdA)S328 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1qhdA)V334 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1qhdA)L335 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1qhdA 327 :E T0506 152 :VQING 1qhdA 329 :AVCES Number of specific fragments extracted= 2 number of extra gaps= 2 total=34678 # 1sr9A.150.551 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)G151 (1sr9A)D553 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1sr9A)A558 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sr9A)S560 Warning: unaligning (T0506)P158 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sr9A)S560 T0506 150 :E 1sr9A 552 :L T0506 152 :VQIN 1sr9A 554 :YYEH Number of specific fragments extracted= 2 number of extra gaps= 2 total=34680 # 1e4fT.150.228 read from T0506.t04.many.frag # found chain 1e4fT in template set Warning: unaligning (T0506)G151 (1e4fT)K230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1e4fT)P235 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1e4fT)V236 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1e4fT)G237 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1e4fT 229 :I T0506 152 :VQIN 1e4fT 231 :ISYV Number of specific fragments extracted= 2 number of extra gaps= 2 total=34682 # 1ckmA.150.286 read from T0506.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0506)E150 (1ckmA)G287 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G151 (1ckmA)T288 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1ckmA)K290 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1ckmA)G294 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ckmA)R295 because D (zeta) conformation "forbidden" or filtered. T0506 152 :V 1ckmA 289 :W T0506 154 :ING 1ckmA 291 :YIQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=34684 # 1gesA.150.402 read from T0506.t04.many.frag # found chain 1gesA in template set Warning: unaligning (T0506)I154 (1gesA)G407 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1gesA)F410 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1gesA)G411 because T (delta_L) conformation "forbidden" or filtered. T0506 150 :EGVQ 1gesA 403 :VGIH T0506 155 :NG 1gesA 408 :IG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34686 # 1ijqA.150.185 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)N155 (1ijqA)I567 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1ijqA)D568 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ijqA)N570 because G (3-10) conformation "forbidden" or filtered. T0506 150 :EGVQI 1ijqA 562 :HSISS T0506 157 :G 1ijqA 569 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34688 # 2blnA.150.276 read from T0506.t04.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)G157 (2blnA)G284 because P (beta_P) conformation "forbidden" or filtered. T0506 150 :EGVQING 2blnA 277 :VTGQAGD T0506 158 :P 2blnA 285 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=34690 # 1vl7A.150.146 read from T0506.t04.many.frag # found chain 1vl7A in training set Warning: unaligning (T0506)G151 (1vl7A)E136 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1vl7A)I141 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :E 1vl7A 135 :K T0506 152 :VQIN 1vl7A 137 :GRFV T0506 157 :GP 1vl7A 142 :GF Number of specific fragments extracted= 3 number of extra gaps= 2 total=34693 # 1nbcA.150.55 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. T0506 150 :EGV 1nbcA 56 :DHA T0506 154 :INGG 1nbcA 60 :IIGS Number of specific fragments extracted= 2 number of extra gaps= 2 total=34695 # 1jovA.150.220 read from T0506.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0506)G151 (1jovA)Q222 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :E 1jovA 221 :S T0506 152 :VQINGGP 1jovA 223 :FVLWNPW Number of specific fragments extracted= 2 number of extra gaps= 1 total=34697 # 1uebA.150.77 read from T0506.t04.many.frag # found chain 1uebA in training set T0506 150 :EGVQINGGP 1uebA 78 :EEMVFMDLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34698 1h9dB expands to /projects/compbio/data/pdb/1h9d.pdb.gz 1h9dB:# 1h9dB.150.23 read from T0506.t04.many.frag # adding 1h9dB to template set # found chain 1h9dB in template set Warning: unaligning (T0506)G151 (1h9dB)E26 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1h9dB)K28 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1h9dB 25 :C T0506 152 :V 1h9dB 27 :I T0506 154 :INGGP 1h9dB 29 :YTGFR Number of specific fragments extracted= 3 number of extra gaps= 2 total=34701 2ezvA expands to /projects/compbio/data/pdb/2ezv.pdb.gz 2ezvA:# 2ezvA.150.178 read from T0506.t04.many.frag # adding 2ezvA to template set # found chain 2ezvA in template set T0506 150 :EGVQINGGP 2ezvA 179 :KSIYVLSLP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34702 # 1p5tA.150.33 read from T0506.t04.many.frag # found chain 1p5tA in template set Warning: unaligning (T0506)G157 (1p5tA)L41 because P (beta_P) conformation "forbidden" or filtered. T0506 150 :EGVQING 1p5tA 34 :EKLTLLT T0506 158 :P 1p5tA 42 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=34704 # 1wvhA.150.48 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G151 (1wvhA)G1654 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wvhA)Q1661 because Y (epsilon') conformation "forbidden" or filtered. T0506 150 :E 1wvhA 1653 :Q T0506 152 :VQINGG 1wvhA 1655 :ITLTDN Number of specific fragments extracted= 2 number of extra gaps= 2 total=34706 # 1l6pA.150.50 read from T0506.t04.many.frag # found chain 1l6pA in training set Warning: unaligning (T0506)N155 (1l6pA)A56 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1l6pA)D57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1l6pA)Q59 because E (beta_S) conformation "forbidden" or filtered. T0506 150 :EGVQI 1l6pA 51 :EHAKI T0506 157 :G 1l6pA 58 :V Number of specific fragments extracted= 2 number of extra gaps= 2 total=34708 # 1xhnA.151.159 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. T0506 151 :GVQIN 1xhnA 160 :NIWVL T0506 158 :P 1xhnA 167 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=34710 # 2cy5A.151.58 read from T0506.t04.many.frag # found chain 2cy5A in template set Warning: unaligning (T0506)Q153 (2cy5A)T86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (2cy5A)D89 because P (beta_P) conformation "forbidden" or filtered. T0506 151 :GV 2cy5A 84 :QV T0506 154 :IN 2cy5A 87 :LL T0506 157 :GPA 2cy5A 90 :PVS Number of specific fragments extracted= 3 number of extra gaps= 2 total=34713 # 1zsoA.151.110 read from T0506.t04.many.frag # found chain 1zsoA in template set Warning: unaligning (T0506)G157 (1zsoA)F109 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1zsoA)F110 because D (zeta) conformation "forbidden" or filtered. T0506 151 :GVQING 1zsoA 103 :GIELID T0506 159 :A 1zsoA 111 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=34715 # 1dynA.151.40 read from T0506.t04.many.frag # found chain 1dynA in template set T0506 151 :GVQINGGPA 1dynA 41 :NLSWYKDDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=34716 # 1ckmA.151.287 read from T0506.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0506)G157 (1ckmA)G294 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ckmA)R295 because D (zeta) conformation "forbidden" or filtered. T0506 151 :GVQING 1ckmA 288 :TWKYIQ T0506 159 :A 1ckmA 296 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=34718 # 1nmoA.151.166 read from T0506.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)G156 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1nmoA)G173 because S (epsilon) conformation "forbidden" or filtered. T0506 151 :GVQIN 1nmoA 167 :RVAWC T0506 158 :PA 1nmoA 174 :GG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34720 # 2ai4A.151.64 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)G156 (2ai4A)T67 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQIN 2ai4A 62 :GVGFV T0506 157 :G 2ai4A 68 :P T0506 159 :A 2ai4A 70 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=34723 # 1xksA.151.231 read from T0506.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)N155 (1xksA)D300 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1xksA)S303 because Y (epsilon') conformation "forbidden" or filtered. T0506 151 :GVQI 1xksA 296 :KWEL T0506 156 :GG 1xksA 301 :DS T0506 159 :A 1xksA 304 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=34726 # 1txvA.151.265 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1txvA 266 :AVEILDS Number of specific fragments extracted= 1 number of extra gaps= 1 total=34727 # 1tueB.151.142 read from T0506.t04.many.frag # found chain 1tueB in template set Warning: unaligning (T0506)G151 (1tueB)S140 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1tueB)Y142 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1tueB)M144 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1tueB)T145 because P (beta_P) conformation "forbidden" or filtered. T0506 152 :V 1tueB 141 :V T0506 154 :I 1tueB 143 :Y T0506 157 :GPA 1tueB 146 :DAG Number of specific fragments extracted= 3 number of extra gaps= 3 total=34730 # 1ijqA.151.186 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)G151 (1ijqA)S563 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1ijqA)D568 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ijqA)N570 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQIN 1ijqA 564 :ISSI T0506 157 :G 1ijqA 569 :V T0506 159 :A 1ijqA 571 :G Number of specific fragments extracted= 3 number of extra gaps= 3 total=34733 # 1tif.151.14 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1tif 15 :EVRLIDQ T0506 159 :A 1tif 23 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=34735 # 1xv2A.151.122 read from T0506.t04.many.frag # found chain 1xv2A in template set Warning: unaligning (T0506)G157 (1xv2A)M126 because P (beta_P) conformation "forbidden" or filtered. T0506 151 :GVQING 1xv2A 120 :HMHVRM T0506 158 :PA 1xv2A 127 :PA Number of specific fragments extracted= 2 number of extra gaps= 1 total=34737 # 1tvxA.151.25 read from T0506.t04.many.frag # found chain 1tvxA in training set Warning: unaligning (T0506)G157 (1tvxA)K47 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tvxA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0506 151 :GVQING 1tvxA 41 :SLEVIG T0506 159 :A 1tvxA 49 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34739 # 1jovA.151.221 read from T0506.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0506)P158 (1jovA)W229 because S (epsilon) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1jovA 222 :QFVLWNP T0506 159 :A 1jovA 230 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=34741 # 1uebA.151.78 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)G157 (1uebA)L85 because G (3-10) conformation "forbidden" or filtered. T0506 151 :GVQING 1uebA 79 :EMVFMD T0506 158 :PA 1uebA 86 :ET Number of specific fragments extracted= 2 number of extra gaps= 1 total=34743 # 1je5A.151.173 read from T0506.t04.many.frag # found chain 1je5A in template set Warning: unaligning (T0506)G157 (1je5A)L180 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1je5A)D189 T0506 151 :GVQING 1je5A 174 :SVMLVE T0506 158 :P 1je5A 181 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=34745 2c3vA expands to /projects/compbio/data/pdb/2c3v.pdb.gz 2c3vA:Bad short name: I1 for alphabet: pdb_atoms Bad short name: I2 for alphabet: pdb_atoms Bad short name: I1 for alphabet: pdb_atoms Bad short name: I1 for alphabet: pdb_atoms Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 2c3vA Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 2c3vA Skipped atom 733, because occupancy 0.500 <= existing 0.500 in 2c3vA # 2c3vA.151.63 read from T0506.t04.many.frag # adding 2c3vA to template set # found chain 2c3vA in template set Warning: unaligning (T0506)N155 (2c3vA)N145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2c3vA)S148 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (2c3vA)G149 because T (delta_L) conformation "forbidden" or filtered. T0506 151 :GVQI 2c3vA 141 :RAAF T0506 156 :GG 2c3vA 146 :NG Number of specific fragments extracted= 2 number of extra gaps= 2 total=34747 # 1h9dB.151.24 read from T0506.t04.many.frag # found chain 1h9dB in template set T0506 151 :GVQINGGPA 1h9dB 26 :EIKYTGFRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=34748 # 1wvhA.151.49 read from T0506.t04.many.frag # found chain 1wvhA in template set Warning: unaligning (T0506)G151 (1wvhA)G1654 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1wvhA)T1656 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1wvhA)D1659 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wvhA)Q1661 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :V 1wvhA 1655 :I T0506 154 :IN 1wvhA 1657 :LT T0506 157 :G 1wvhA 1660 :N T0506 159 :A 1wvhA 1662 :R Number of specific fragments extracted= 4 number of extra gaps= 4 total=34752 # 1nbcA.151.56 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)G151 (1nbcA)H57 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1nbcA)G62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nbcA)G65 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :V 1nbcA 58 :A T0506 154 :IN 1nbcA 60 :II T0506 157 :G 1nbcA 63 :S Number of specific fragments extracted= 3 number of extra gaps= 4 total=34755 # 3chbD.151.84 read from T0506.t04.many.frag # found chain 3chbD in training set Warning: unaligning (T0506)Q153 (3chbD)C86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (3chbD)K91 because E (beta_S) conformation "forbidden" or filtered. T0506 151 :GV 3chbD 84 :KL T0506 154 :INGG 3chbD 87 :VWNN T0506 159 :A 3chbD 92 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=34758 # 2blnA.151.277 read from T0506.t04.many.frag # found chain 2blnA in template set Warning: unaligning (T0506)G151 (2blnA)T278 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (2blnA)G284 because P (beta_P) conformation "forbidden" or filtered. T0506 152 :VQING 2blnA 279 :GQAGD T0506 158 :PA 2blnA 285 :IT Number of specific fragments extracted= 2 number of extra gaps= 2 total=34760 # 1xubA.151.133 read from T0506.t04.many.frag # found chain 1xubA in training set Warning: unaligning (T0506)V152 (1xubA)A115 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1xubA)D118 because P (beta_P) conformation "forbidden" or filtered. T0506 151 :G 1xubA 114 :A T0506 153 :QI 1xubA 116 :SM T0506 156 :GGPA 1xubA 119 :QPIP Number of specific fragments extracted= 3 number of extra gaps= 2 total=34763 # 1ty9A.151.190 read from T0506.t04.many.frag # found chain 1ty9A in training set Warning: unaligning (T0506)P158 (1ty9A)G198 because S (epsilon) conformation "forbidden" or filtered. T0506 151 :GVQINGG 1ty9A 191 :SLEFWGN T0506 159 :A 1ty9A 199 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=34765 2a90A expands to /projects/compbio/data/pdb/2a90.pdb.gz 2a90A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a90A.151.110 read from T0506.t04.many.frag # adding 2a90A to template set # found chain 2a90A in template set Warning: unaligning (T0506)G156 (2a90A)G137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2a90A)S139 because Y (epsilon') conformation "forbidden" or filtered. T0506 151 :GVQIN 2a90A 132 :KWEWS T0506 157 :G 2a90A 138 :G T0506 159 :A 2a90A 140 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=34768 1who expands to /projects/compbio/data/pdb/1who.pdb.gz 1who:Warning: there is no chain 1who will retry with 1whoA # 1who.151.29 read from T0506.t04.many.frag # adding 1who to template set # found chain 1who in template set Warning: unaligning (T0506)G157 (1who)H36 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1who)G37 because T (delta_L) conformation "forbidden" or filtered. T0506 151 :GVQING 1who 30 :EVELRE T0506 159 :A 1who 38 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=34770 # 1sr9A.151.552 read from T0506.t04.many.frag # found chain 1sr9A in template set Warning: unaligning (T0506)N155 (1sr9A)H557 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1sr9A)A558 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sr9A)S560 Warning: unaligning (T0506)P158 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sr9A)S560 T0506 151 :GVQI 1sr9A 553 :DYYE T0506 159 :A 1sr9A 561 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=34772 2b5nA expands to /projects/compbio/data/pdb/2b5n.pdb.gz 2b5nA:# 2b5nA.151.88 read from T0506.t04.many.frag # adding 2b5nA to template set # found chain 2b5nA in template set Warning: unaligning (T0506)G151 (2b5nA)S475 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (2b5nA)V479 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (2b5nA)S480 because P (beta_P) conformation "forbidden" or filtered. T0506 152 :VQI 2b5nA 476 :VRL T0506 157 :GPA 2b5nA 481 :QEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34774 # 1vl7A.151.147 read from T0506.t04.many.frag # found chain 1vl7A in training set T0506 151 :GVQINGGPA 1vl7A 136 :EGRFVIGFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34775 # 1xhnA.152.160 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xhnA)G169 because S (epsilon) conformation "forbidden" or filtered. T0506 152 :VQIN 1xhnA 161 :IWVL T0506 158 :P 1xhnA 167 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=34777 # 1txvA.152.266 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQINGG 1txvA 267 :VEILDS T0506 159 :AR 1txvA 274 :YQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34779 # 1zsoA.152.111 read from T0506.t04.many.frag # found chain 1zsoA in template set Warning: unaligning (T0506)P158 (1zsoA)F110 because D (zeta) conformation "forbidden" or filtered. T0506 152 :VQINGG 1zsoA 104 :IELIDF T0506 159 :AR 1zsoA 111 :PS Number of specific fragments extracted= 2 number of extra gaps= 1 total=34781 # 1jovA.152.222 read from T0506.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0506)P158 (1jovA)W229 because S (epsilon) conformation "forbidden" or filtered. T0506 152 :VQINGG 1jovA 223 :FVLWNP T0506 159 :AR 1jovA 230 :HK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34783 # 1tif.152.15 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)G156 (1tif)D20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1tif)G23 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQIN 1tif 16 :VRLI T0506 157 :G 1tif 21 :Q T0506 160 :R 1tif 24 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=34786 # 2cy5A.152.59 read from T0506.t04.many.frag # found chain 2cy5A in template set Warning: unaligning (T0506)G156 (2cy5A)D89 because P (beta_P) conformation "forbidden" or filtered. T0506 152 :VQIN 2cy5A 85 :VTLL T0506 157 :GPAR 2cy5A 90 :PVSK Number of specific fragments extracted= 2 number of extra gaps= 1 total=34788 # 1uebA.152.79 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)G157 (1uebA)L85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uebA)Y88 because L (left) conformation "forbidden" or filtered. T0506 152 :VQING 1uebA 80 :MVFMD T0506 158 :PA 1uebA 86 :ET Number of specific fragments extracted= 2 number of extra gaps= 2 total=34790 # 1ijqA.152.187 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)Q153 (1ijqA)S565 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1ijqA)I567 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ijqA)N570 because G (3-10) conformation "forbidden" or filtered. T0506 152 :V 1ijqA 564 :I T0506 154 :I 1ijqA 566 :S T0506 156 :GG 1ijqA 568 :DV T0506 159 :AR 1ijqA 571 :GG Number of specific fragments extracted= 4 number of extra gaps= 3 total=34794 # 1ckmA.152.288 read from T0506.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0506)P158 (1ckmA)R295 because D (zeta) conformation "forbidden" or filtered. T0506 152 :VQINGG 1ckmA 289 :WKYIQG T0506 159 :AR 1ckmA 296 :SD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34796 # 2c3vA.152.64 read from T0506.t04.many.frag # found chain 2c3vA in template set Warning: unaligning (T0506)G156 (2c3vA)N146 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2c3vA)S148 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQIN 2c3vA 142 :AAFN T0506 157 :G 2c3vA 147 :G T0506 159 :AR 2c3vA 149 :GQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=34799 # 2sak.152.13 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)G156 (2sak)D33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2sak)K35 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQIN 2sak 29 :VTGV T0506 157 :G 2sak 34 :S T0506 159 :AR 2sak 36 :GN Number of specific fragments extracted= 3 number of extra gaps= 2 total=34802 # 1wmhA.152.48 read from T0506.t04.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)G156 (1wmhA)D63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhA)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQIN 1wmhA 59 :MKWI T0506 157 :G 1wmhA 64 :E T0506 160 :R 1wmhA 67 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=34805 1mspA expands to /projects/compbio/data/pdb/1msp.pdb.gz 1mspA:# 1mspA.152.90 read from T0506.t04.many.frag # adding 1mspA to template set # found chain 1mspA in template set Warning: unaligning (T0506)N155 (1mspA)T94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1mspA)N95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1mspA)T96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1mspA)G99 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQI 1mspA 91 :IEW T0506 158 :PA 1mspA 97 :PD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34807 # 1aihA.152.56 read from T0506.t04.many.frag # found chain 1aihA in template set Warning: unaligning (T0506)G157 (1aihA)T229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1aihA)K232 because L (left) conformation "forbidden" or filtered. T0506 152 :VQING 1aihA 224 :ITFTN T0506 158 :PA 1aihA 230 :KS Number of specific fragments extracted= 2 number of extra gaps= 2 total=34809 # 1nezG.152.52 read from T0506.t04.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)Q153 (1nezG)V54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1nezG)M56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nezG)H60 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :V 1nezG 53 :V T0506 154 :I 1nezG 55 :Y T0506 156 :GGP 1nezG 57 :ASS T0506 160 :R 1nezG 61 :N Number of specific fragments extracted= 4 number of extra gaps= 3 total=34813 # 1gwmA.152.112 read from T0506.t04.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)A159 (1gwmA)G120 because L (left) conformation "forbidden" or filtered. T0506 152 :VQINGGP 1gwmA 113 :IDFQDAP T0506 160 :R 1gwmA 121 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=34815 # 1nbcA.152.57 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)P158 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nbcA)G65 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQINGG 1nbcA 58 :AAIIGS T0506 160 :R 1nbcA 66 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=34817 # 1iwlA.152.126 read from T0506.t04.many.frag # found chain 1iwlA in training set T0506 152 :VQINGGPAR 1iwlA 127 :FTINVGRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=34818 1sfp expands to /projects/compbio/data/pdb/1sfp.pdb.gz 1sfp:Warning: there is no chain 1sfp will retry with 1sfpA Skipped atom 254, because occupancy 0.380 <= existing 0.620 in 1sfp Skipped atom 256, because occupancy 0.380 <= existing 0.620 in 1sfp Skipped atom 258, because occupancy 0.380 <= existing 0.620 in 1sfp # 1sfp.152.58 read from T0506.t04.many.frag # adding 1sfp to template set # found chain 1sfp in template set Warning: unaligning (T0506)R160 (1sfp)G67 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQINGGPA 1sfp 59 :LEIIDGLP Number of specific fragments extracted= 1 number of extra gaps= 1 total=34819 # 1evlA.152.364 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)N155 (1evlA)R609 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1evlA)R612 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1evlA)G613 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQI 1evlA 606 :VAV T0506 156 :GG 1evlA 610 :TR T0506 160 :R 1evlA 614 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=34822 # 2b5nA.152.89 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)Q153 (2b5nA)R477 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2b5nA)K484 because L (left) conformation "forbidden" or filtered. T0506 152 :V 2b5nA 476 :V T0506 154 :INGGPA 2b5nA 478 :LVSQEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34824 # 1wmhB.152.49 read from T0506.t04.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)Q153 (1wmhB)G60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1wmhB)D63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. T0506 152 :V 1wmhB 59 :L T0506 154 :IN 1wmhB 61 :YT T0506 157 :G 1wmhB 64 :A T0506 159 :AR 1wmhB 66 :GD Number of specific fragments extracted= 4 number of extra gaps= 3 total=34828 # 1nmoA.152.167 read from T0506.t04.many.frag # found chain 1nmoA in template set Warning: unaligning (T0506)G156 (1nmoA)T172 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nmoA)G175 because G (3-10) conformation "forbidden" or filtered. T0506 152 :VQIN 1nmoA 168 :VAWC T0506 157 :GP 1nmoA 173 :GG T0506 160 :R 1nmoA 176 :Q Number of specific fragments extracted= 3 number of extra gaps= 2 total=34831 # 1h9dB.152.25 read from T0506.t04.many.frag # found chain 1h9dB in template set T0506 152 :VQINGGPAR 1h9dB 27 :IKYTGFRDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=34832 # 1ntvA.152.71 read from T0506.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)Q153 (1ntvA)K95 because E (beta_S) conformation "forbidden" or filtered. T0506 152 :V 1ntvA 94 :I T0506 154 :INGGPAR 1ntvA 96 :IFDEKTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=34834 # 1lla.152.395 read from T0506.t04.many.frag # found chain 1lla in template set Warning: unaligning (T0506)P158 (1lla)V402 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1lla)N404 because L (left) conformation "forbidden" or filtered. T0506 152 :VQINGG 1lla 396 :VTLHAR T0506 159 :A 1lla 403 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=34836 # 1dynA.152.41 read from T0506.t04.many.frag # found chain 1dynA in template set Warning: unaligning (T0506)G157 (1dynA)D47 because Y (epsilon') conformation "forbidden" or filtered. T0506 152 :VQING 1dynA 42 :LSWYK T0506 158 :PAR 1dynA 48 :DEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=34838 # 1iq4A.152.33 read from T0506.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0506)G156 (1iq4A)M38 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1iq4A)V40 because D (zeta) conformation "forbidden" or filtered. T0506 152 :VQIN 1iq4A 34 :IVIN T0506 157 :G 1iq4A 39 :G T0506 159 :AR 1iq4A 41 :GD Number of specific fragments extracted= 3 number of extra gaps= 2 total=34841 # 2ai4A.152.65 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)G156 (2ai4A)T67 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2ai4A)G71 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQIN 2ai4A 63 :VGFV T0506 157 :G 2ai4A 68 :P T0506 159 :A 2ai4A 70 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=34844 # 1dyoA.152.91 read from T0506.t04.many.frag # found chain 1dyoA in template set Warning: unaligning (T0506)P158 (1dyoA)S98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1dyoA)G99 because T (delta_L) conformation "forbidden" or filtered. T0506 152 :VQINGG 1dyoA 92 :LQYVDG T0506 160 :R 1dyoA 100 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=34846 # 1xhnA.153.161 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 153 :QINGGPARN 1xhnA 162 :WVLDYFGGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=34847 # 1jovA.153.223 read from T0506.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0506)G156 (1jovA)N227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1jovA)K232 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QIN 1jovA 224 :VLW T0506 157 :GPAR 1jovA 228 :PWHK Number of specific fragments extracted= 2 number of extra gaps= 2 total=34849 # 1tif.153.16 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. T0506 153 :QINGG 1tif 17 :RLIDQ T0506 159 :ARN 1tif 23 :GDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=34851 # 1txvA.153.267 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0506 153 :QINGG 1txvA 268 :EILDS T0506 160 :RN 1txvA 275 :QR Number of specific fragments extracted= 2 number of extra gaps= 1 total=34853 # 1ijqA.153.188 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)Q153 (1ijqA)S565 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N155 (1ijqA)I567 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ijqA)N570 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ijqA)G571 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1ijqA)G572 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1ijqA)N573 because L (left) conformation "forbidden" or filtered. T0506 154 :I 1ijqA 566 :S T0506 156 :GG 1ijqA 568 :DV Number of specific fragments extracted= 2 number of extra gaps= 3 total=34855 # 1evlA.153.365 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)P158 (1evlA)R612 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1evlA)G613 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QINGG 1evlA 607 :AVRTR T0506 160 :RN 1evlA 614 :KD Number of specific fragments extracted= 2 number of extra gaps= 1 total=34857 # 1uebA.153.80 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)G157 (1uebA)L85 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uebA)Y88 because L (left) conformation "forbidden" or filtered. T0506 153 :QING 1uebA 81 :VFMD T0506 158 :PA 1uebA 86 :ET T0506 161 :N 1uebA 89 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=34860 # 1zsoA.153.112 read from T0506.t04.many.frag # found chain 1zsoA in template set Warning: unaligning (T0506)P158 (1zsoA)F110 because D (zeta) conformation "forbidden" or filtered. T0506 153 :QINGG 1zsoA 105 :ELIDF T0506 159 :ARN 1zsoA 111 :PSN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34862 # 1ckmA.153.289 read from T0506.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0506)G156 (1ckmA)Q293 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ckmA)R295 because D (zeta) conformation "forbidden" or filtered. T0506 153 :QIN 1ckmA 290 :KYI T0506 157 :G 1ckmA 294 :G T0506 159 :ARN 1ckmA 296 :SDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=34865 # 1mspA.153.91 read from T0506.t04.many.frag # found chain 1mspA in template set T0506 153 :QINGGPARN 1mspA 92 :EWTNTPDGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=34866 # 1wmhB.153.50 read from T0506.t04.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhB)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QINGG 1wmhB 60 :GYTDA T0506 160 :RN 1wmhB 67 :DL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34868 # 1aihA.153.57 read from T0506.t04.many.frag # found chain 1aihA in template set Warning: unaligning (T0506)G157 (1aihA)T229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1aihA)K232 because L (left) conformation "forbidden" or filtered. T0506 153 :QING 1aihA 225 :TFTN T0506 158 :PA 1aihA 230 :KS T0506 161 :N 1aihA 233 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=34871 # 2ai4A.153.66 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)G156 (2ai4A)T67 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. T0506 153 :QIN 2ai4A 64 :GFV T0506 157 :G 2ai4A 68 :P T0506 159 :ARN 2ai4A 70 :DGI Number of specific fragments extracted= 3 number of extra gaps= 2 total=34874 # 2cy5A.153.60 read from T0506.t04.many.frag # found chain 2cy5A in template set Warning: unaligning (T0506)G156 (2cy5A)D89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2cy5A)K93 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QIN 2cy5A 86 :TLL T0506 157 :GPA 2cy5A 90 :PVS T0506 161 :N 2cy5A 94 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=34877 # 1wmhA.153.49 read from T0506.t04.many.frag # found chain 1wmhA in training set Warning: unaligning (T0506)N155 (1wmhA)I62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1wmhA)D63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wmhA)E65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhA)G66 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1wmhA)P68 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QI 1wmhA 60 :KW T0506 157 :G 1wmhA 64 :E T0506 160 :R 1wmhA 67 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=34880 # 2a5zA.153.199 read from T0506.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0506)A159 (2a5zA)G206 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2a5zA)T207 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QINGGP 2a5zA 200 :TLYSDS T0506 161 :N 2a5zA 208 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=34882 # 1iwlA.153.127 read from T0506.t04.many.frag # found chain 1iwlA in training set Warning: unaligning (T0506)G157 (1iwlA)G132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1iwlA)G135 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1iwlA)T136 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QING 1iwlA 128 :TINV T0506 158 :PA 1iwlA 133 :RD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34884 # 1sfp.153.59 read from T0506.t04.many.frag # found chain 1sfp in template set Warning: unaligning (T0506)G156 (1sfp)D63 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1sfp)G67 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QIN 1sfp 60 :EII T0506 157 :GPA 1sfp 64 :GLP T0506 161 :N 1sfp 68 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=34887 # 1nezG.153.53 read from T0506.t04.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)Q153 (1nezG)V54 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nezG)H60 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :INGGP 1nezG 55 :YMASS T0506 160 :RN 1nezG 61 :NK Number of specific fragments extracted= 2 number of extra gaps= 2 total=34889 # 2sak.153.14 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)P158 (2sak)K35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2sak)N37 because P (beta_P) conformation "forbidden" or filtered. T0506 153 :QINGG 2sak 30 :TGVDS T0506 159 :A 2sak 36 :G T0506 161 :N 2sak 38 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=34892 # 1pguA.153.429 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)Q153 (1pguA)L430 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1pguA)F435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1pguA)D438 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :INGG 1pguA 431 :ILQS T0506 159 :AR 1pguA 436 :TG Number of specific fragments extracted= 2 number of extra gaps= 3 total=34894 # 2c3vA.153.65 read from T0506.t04.many.frag # found chain 2c3vA in template set Warning: unaligning (T0506)N155 (2c3vA)N145 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2c3vA)S148 because G (3-10) conformation "forbidden" or filtered. T0506 153 :QI 2c3vA 143 :AF T0506 156 :GG 2c3vA 146 :NG T0506 159 :ARN 2c3vA 149 :GQW Number of specific fragments extracted= 3 number of extra gaps= 2 total=34897 # 1dyoA.153.92 read from T0506.t04.many.frag # found chain 1dyoA in template set Warning: unaligning (T0506)G156 (1dyoA)D96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1dyoA)S98 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1dyoA)G99 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QIN 1dyoA 93 :QYV T0506 157 :G 1dyoA 97 :G T0506 160 :RN 1dyoA 100 :TQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=34900 # 1xipA.153.148 read from T0506.t04.many.frag # found chain 1xipA in template set T0506 153 :QINGGPARN 1xipA 148 :SALDLRTKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=34901 # 1nbcA.153.58 read from T0506.t04.many.frag # found chain 1nbcA in training set Warning: unaligning (T0506)Q153 (1nbcA)A59 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1nbcA)G62 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1nbcA)N64 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nbcA)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1nbcA)Y67 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :IN 1nbcA 60 :II T0506 157 :G 1nbcA 63 :S T0506 160 :R 1nbcA 66 :S Number of specific fragments extracted= 3 number of extra gaps= 4 total=34904 # 1ntvA.153.72 read from T0506.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)R160 (1ntvA)G102 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QINGGPA 1ntvA 95 :KIFDEKT T0506 161 :N 1ntvA 103 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=34906 # 1gwmA.153.113 read from T0506.t04.many.frag # found chain 1gwmA in training set Warning: unaligning (T0506)G156 (1gwmA)D117 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1gwmA)G120 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1gwmA)G122 because T (delta_L) conformation "forbidden" or filtered. T0506 153 :QIN 1gwmA 114 :DFQ T0506 157 :GP 1gwmA 118 :AP T0506 160 :R 1gwmA 121 :N Number of specific fragments extracted= 3 number of extra gaps= 3 total=34909 1twuA expands to /projects/compbio/data/pdb/1twu.pdb.gz 1twuA:# 1twuA.153.61 read from T0506.t04.many.frag # adding 1twuA to template set # found chain 1twuA in template set Warning: unaligning (T0506)G157 (1twuA)Y66 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1twuA)G69 because S (epsilon) conformation "forbidden" or filtered. T0506 153 :QING 1twuA 62 :EFTQ T0506 158 :PA 1twuA 67 :EG T0506 161 :N 1twuA 70 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=34912 # 1j8rA.153.161 read from T0506.t04.many.frag # found chain 1j8rA in training set Warning: unaligning (T0506)R160 (1j8rA)A169 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1j8rA)R170 because E (beta_S) conformation "forbidden" or filtered. T0506 153 :QINGGPA 1j8rA 162 :HFASYLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=34913 # 2b5nA.153.90 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)G156 (2b5nA)S480 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2b5nA)K484 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2b5nA)A485 because Y (epsilon') conformation "forbidden" or filtered. T0506 153 :QIN 2b5nA 477 :RLV T0506 157 :GPA 2b5nA 481 :QEP Number of specific fragments extracted= 2 number of extra gaps= 2 total=34915 # 1xhnA.154.162 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xhnA)G169 because S (epsilon) conformation "forbidden" or filtered. T0506 154 :ING 1xhnA 163 :VLD T0506 158 :PA 1xhnA 167 :FG T0506 161 :NA 1xhnA 170 :PK Number of specific fragments extracted= 3 number of extra gaps= 2 total=34918 # 1tif.154.17 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)G156 (1tif)D20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1tif)D24 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1tif 18 :LI T0506 157 :G 1tif 21 :Q T0506 159 :A 1tif 23 :G T0506 161 :NA 1tif 25 :QL Number of specific fragments extracted= 4 number of extra gaps= 3 total=34922 # 1jovA.154.224 read from T0506.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0506)P158 (1jovA)W229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1jovA)H230 because G (3-10) conformation "forbidden" or filtered. T0506 154 :INGG 1jovA 225 :LWNP T0506 160 :RNA 1jovA 231 :KKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=34924 # 1evlA.154.366 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)P158 (1evlA)R612 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1evlA)G613 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1evlA)L616 because G (3-10) conformation "forbidden" or filtered. T0506 154 :INGG 1evlA 608 :VRTR T0506 160 :RN 1evlA 614 :KD Number of specific fragments extracted= 2 number of extra gaps= 2 total=34926 # 1txvA.154.268 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. T0506 154 :INGG 1txvA 269 :ILDS T0506 160 :RNA 1txvA 275 :QRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34928 # 1iwlA.154.128 read from T0506.t04.many.frag # found chain 1iwlA in training set Warning: unaligning (T0506)G157 (1iwlA)G132 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1iwlA)G135 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :ING 1iwlA 129 :INV T0506 158 :PA 1iwlA 133 :RD T0506 161 :NA 1iwlA 136 :TI Number of specific fragments extracted= 3 number of extra gaps= 2 total=34931 # 1xipA.154.149 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)G156 (1xipA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xipA)K155 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :IN 1xipA 149 :AL T0506 157 :GPA 1xipA 152 :LRT T0506 161 :NA 1xipA 156 :ST Number of specific fragments extracted= 3 number of extra gaps= 2 total=34934 # 1ijqA.154.189 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)N155 (1ijqA)I567 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1ijqA)D568 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ijqA)N570 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ijqA)G571 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :I 1ijqA 566 :S T0506 157 :G 1ijqA 569 :V T0506 160 :RNA 1ijqA 572 :GNR Number of specific fragments extracted= 3 number of extra gaps= 2 total=34937 # 1aihA.154.58 read from T0506.t04.many.frag # found chain 1aihA in template set Warning: unaligning (T0506)G157 (1aihA)T229 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1aihA)N234 because D (zeta) conformation "forbidden" or filtered. T0506 154 :ING 1aihA 226 :FTN T0506 158 :PARN 1aihA 230 :KSKK Number of specific fragments extracted= 2 number of extra gaps= 2 total=34939 # 2ai4A.154.67 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. T0506 154 :INGG 2ai4A 65 :FVTP T0506 159 :ARNA 2ai4A 70 :DGII Number of specific fragments extracted= 2 number of extra gaps= 1 total=34941 # 1pguA.154.430 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)P158 (1pguA)F435 because G (3-10) conformation "forbidden" or filtered. T0506 154 :INGG 1pguA 431 :ILQS T0506 159 :ARNA 1pguA 436 :TGDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34943 # 1uebA.154.81 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)N155 (1uebA)M83 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uebA)Y88 because L (left) conformation "forbidden" or filtered. T0506 154 :I 1uebA 82 :F T0506 156 :GGPA 1uebA 84 :DLET T0506 161 :NA 1uebA 89 :EQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=34946 # 1mspA.154.92 read from T0506.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0506)G156 (1mspA)N95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1mspA)T96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1mspA)A101 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1mspA 93 :WT T0506 158 :PARN 1mspA 97 :PDGA Number of specific fragments extracted= 2 number of extra gaps= 2 total=34948 # 1nezG.154.54 read from T0506.t04.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)N155 (1nezG)M56 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1nezG)A57 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1nezG)H60 because Y (epsilon') conformation "forbidden" or filtered. T0506 154 :I 1nezG 55 :Y T0506 157 :GP 1nezG 58 :SS T0506 160 :RNA 1nezG 61 :NKI Number of specific fragments extracted= 3 number of extra gaps= 2 total=34951 # 1wmhB.154.51 read from T0506.t04.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)G156 (1wmhB)D63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1wmhB)L68 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1wmhB 61 :YT T0506 157 :G 1wmhB 64 :A T0506 159 :AR 1wmhB 66 :GD T0506 162 :A 1wmhB 69 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=34955 # 1j8rA.154.162 read from T0506.t04.many.frag # found chain 1j8rA in training set T0506 154 :INGGPARNA 1j8rA 163 :FASYLGARF Number of specific fragments extracted= 1 number of extra gaps= 0 total=34956 # 2sak.154.15 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)G156 (2sak)D33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2sak)K35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (2sak)G36 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :IN 2sak 31 :GV T0506 157 :G 2sak 34 :S T0506 160 :RNA 2sak 37 :NEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=34959 # 2a5zA.154.200 read from T0506.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0506)A159 (2a5zA)G206 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :INGGP 2a5zA 201 :LYSDS T0506 160 :RNA 2a5zA 207 :TQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=34961 # 1crzA.154.332 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)G156 (1crzA)D341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1crzA)G346 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :IN 1crzA 339 :KQ T0506 157 :GPAR 1crzA 342 :LATG T0506 162 :A 1crzA 347 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=34964 # 1oj5A.154.10 read from T0506.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)G157 (1oj5A)D267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1oj5A)T268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1oj5A)G270 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :ING 1oj5A 264 :TKQ T0506 159 :A 1oj5A 269 :T T0506 161 :NA 1oj5A 271 :KI Number of specific fragments extracted= 3 number of extra gaps= 2 total=34967 # 2f5tX.154.168 read from T0506.t04.many.frag # found chain 2f5tX in template set Warning: unaligning (T0506)N155 (2f5tX)K279 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2f5tX)G284 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2f5tX)R285 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :I 2f5tX 278 :G T0506 156 :GGPA 2f5tX 280 :NLES T0506 162 :A 2f5tX 286 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=34970 # 1gxrA.154.208 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)P158 (1gxrA)R646 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1gxrA)G648 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1gxrA)Q650 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :INGG 1gxrA 642 :SWDL T0506 159 :A 1gxrA 647 :E T0506 161 :N 1gxrA 649 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=34973 # 2c1lA.154.333 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)G156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c1lA)N337 Warning: unaligning (T0506)G157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c1lA)N337 Warning: unaligning (T0506)P158 (2c1lA)R338 because G (3-10) conformation "forbidden" or filtered. T0506 154 :IN 2c1lA 334 :FI T0506 159 :ARNA 2c1lA 339 :GKRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=34975 # 1ckmA.154.290 read from T0506.t04.many.frag # found chain 1ckmA in template set Warning: unaligning (T0506)G156 (1ckmA)Q293 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1ckmA)G294 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ckmA)R295 because D (zeta) conformation "forbidden" or filtered. T0506 154 :IN 1ckmA 291 :YI T0506 159 :ARNA 1ckmA 296 :SDKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=34977 # 2cy5A.154.61 read from T0506.t04.many.frag # found chain 2cy5A in template set Warning: unaligning (T0506)G156 (2cy5A)D89 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2cy5A)K93 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :IN 2cy5A 87 :LL T0506 157 :GPA 2cy5A 90 :PVS T0506 161 :NA 2cy5A 94 :EE Number of specific fragments extracted= 3 number of extra gaps= 2 total=34980 # 1tp6A.154.108 read from T0506.t04.many.frag # found chain 1tp6A in training set Warning: unaligning (T0506)G156 (1tp6A)R111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1tp6A)L117 because E (beta_S) conformation "forbidden" or filtered. T0506 154 :IN 1tp6A 109 :LH T0506 157 :GPARN 1tp6A 112 :DDEGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=34982 # 1pjxA.154.250 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)N155 (1pjxA)F252 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0506)P158 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0506)A159 (1pjxA)G256 because S (epsilon) conformation "forbidden" or filtered. T0506 154 :I 1pjxA 251 :V T0506 156 :G 1pjxA 253 :G T0506 160 :RNA 1pjxA 257 :GQP Number of specific fragments extracted= 3 number of extra gaps= 2 total=34985 # 1odmA.154.90 read from T0506.t04.many.frag # found chain 1odmA in training set Warning: unaligning (T0506)G156 (1odmA)S93 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1odmA)I94 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1odmA)G96 because T (delta_L) conformation "forbidden" or filtered. T0506 154 :IN 1odmA 91 :YL T0506 158 :P 1odmA 95 :P T0506 160 :RNA 1odmA 97 :KKA Number of specific fragments extracted= 3 number of extra gaps= 2 total=34988 # 1twuA.154.62 read from T0506.t04.many.frag # found chain 1twuA in template set Warning: unaligning (T0506)G157 (1twuA)Y66 because P (beta_P) conformation "forbidden" or filtered. T0506 154 :ING 1twuA 63 :FTQ T0506 158 :PARNA 1twuA 67 :EGGST Number of specific fragments extracted= 2 number of extra gaps= 1 total=34990 # 1ntvA.154.73 read from T0506.t04.many.frag # found chain 1ntvA in training set T0506 154 :INGGPARNA 1ntvA 96 :IFDEKTGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=34991 # 1tif.155.18 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)G156 (1tif)D20 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. T0506 155 :N 1tif 19 :I T0506 157 :G 1tif 21 :Q T0506 159 :ARNAS 1tif 23 :GDQLG Number of specific fragments extracted= 3 number of extra gaps= 2 total=34994 # 1evlA.155.367 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)P158 (1evlA)R612 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1evlA)G617 because S (epsilon) conformation "forbidden" or filtered. T0506 155 :NGG 1evlA 609 :RTR T0506 159 :ARNA 1evlA 613 :GKDL Number of specific fragments extracted= 2 number of extra gaps= 2 total=34996 # 1xhnA.155.163 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G156 (1xhnA)D165 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. T0506 155 :N 1xhnA 164 :L T0506 158 :PARNAS 1xhnA 167 :FGGPKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=34998 # 1txvA.155.269 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)G156 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1txvA)R276 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :N 1txvA 270 :L T0506 157 :G 1txvA 272 :S T0506 160 :R 1txvA 275 :Q T0506 162 :AS 1txvA 277 :LH Number of specific fragments extracted= 4 number of extra gaps= 3 total=35002 # 2c1lA.155.334 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)G156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c1lA)N337 Warning: unaligning (T0506)G157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c1lA)N337 Warning: unaligning (T0506)P158 (2c1lA)R338 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (2c1lA)G343 because Y (epsilon') conformation "forbidden" or filtered. T0506 155 :N 2c1lA 335 :I T0506 159 :ARNA 2c1lA 339 :GKRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=35004 # 1iwlA.155.129 read from T0506.t04.many.frag # found chain 1iwlA in training set Warning: unaligning (T0506)G156 (1iwlA)V131 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :N 1iwlA 130 :N T0506 157 :GPARNAS 1iwlA 132 :GRDGTIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35006 # 1xipA.155.150 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)G156 (1xipA)D151 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1xipA)K155 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1xipA)T157 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :N 1xipA 150 :L T0506 157 :GPA 1xipA 152 :LRT T0506 161 :N 1xipA 156 :S T0506 163 :S 1xipA 158 :K Number of specific fragments extracted= 4 number of extra gaps= 3 total=35010 # 2ai4A.155.68 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)G156 (2ai4A)T67 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. T0506 155 :N 2ai4A 66 :V T0506 157 :G 2ai4A 68 :P T0506 159 :ARNAS 2ai4A 70 :DGIID Number of specific fragments extracted= 3 number of extra gaps= 2 total=35013 # 1oj5A.155.11 read from T0506.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)P158 (1oj5A)T268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1oj5A)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1oj5A)K271 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :NGG 1oj5A 265 :KQD T0506 159 :A 1oj5A 269 :T T0506 162 :AS 1oj5A 272 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=35016 # 1jovA.155.225 read from T0506.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0506)N155 (1jovA)W226 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1jovA)N227 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1jovA)K232 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPAR 1jovA 228 :PWHK T0506 162 :AS 1jovA 233 :TS Number of specific fragments extracted= 2 number of extra gaps= 2 total=35018 # 1pguA.155.431 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)P158 (1pguA)F435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1pguA)G437 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1pguA)D438 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1pguA)I440 because G (3-10) conformation "forbidden" or filtered. T0506 155 :NGG 1pguA 432 :LQS T0506 159 :A 1pguA 436 :T T0506 162 :A 1pguA 439 :I Number of specific fragments extracted= 3 number of extra gaps= 3 total=35021 # 1aihA.155.59 read from T0506.t04.many.frag # found chain 1aihA in template set Warning: unaligning (T0506)R160 (1aihA)K232 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1aihA)N234 because D (zeta) conformation "forbidden" or filtered. T0506 155 :NGGPA 1aihA 227 :TNTKS T0506 161 :N 1aihA 233 :K T0506 163 :S 1aihA 235 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=35024 # 2a5zA.155.201 read from T0506.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0506)G156 (2a5zA)S203 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :N 2a5zA 202 :Y T0506 157 :GPARNAS 2a5zA 204 :DSGTQLY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35026 # 2f5tX.155.169 read from T0506.t04.many.frag # found chain 2f5tX in template set Warning: unaligning (T0506)G156 (2f5tX)N280 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2f5tX)G284 because T (delta_L) conformation "forbidden" or filtered. T0506 155 :N 2f5tX 279 :K T0506 157 :GPA 2f5tX 281 :LES T0506 161 :NAS 2f5tX 285 :RLE Number of specific fragments extracted= 3 number of extra gaps= 2 total=35029 # 2sak.155.16 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)P158 (2sak)K35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2sak)E38 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :NGG 2sak 32 :VDS T0506 159 :AR 2sak 36 :GN T0506 162 :AS 2sak 39 :LL Number of specific fragments extracted= 3 number of extra gaps= 2 total=35032 # 1wmhB.155.52 read from T0506.t04.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wmhB)G66 because T (delta_L) conformation "forbidden" or filtered. T0506 155 :NGG 1wmhB 62 :TDA T0506 160 :RNAS 1wmhB 67 :DLLP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35034 # 1nezG.155.55 read from T0506.t04.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)A159 (1nezG)H60 because Y (epsilon') conformation "forbidden" or filtered. T0506 155 :NGGP 1nezG 56 :MASS T0506 160 :RNAS 1nezG 61 :NKIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35036 # 1crzA.155.333 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)G156 (1crzA)D341 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :N 1crzA 340 :Q T0506 157 :GPARNAS 1crzA 342 :LATGGVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35038 # 1j8rA.155.163 read from T0506.t04.many.frag # found chain 1j8rA in training set T0506 155 :NGGPARNAS 1j8rA 164 :ASYLGARFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35039 # 1odmA.155.91 read from T0506.t04.many.frag # found chain 1odmA in training set Warning: unaligning (T0506)G157 (1odmA)I94 because D (zeta) conformation "forbidden" or filtered. T0506 155 :NG 1odmA 92 :LS T0506 158 :PARNAS 1odmA 95 :PGKKAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35041 # 1ntvA.155.75 read from T0506.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)P158 (1ntvA)T101 because G (3-10) conformation "forbidden" or filtered. T0506 155 :NGG 1ntvA 98 :DEK T0506 159 :ARNAS 1ntvA 102 :GALQH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35043 # 1ijqA.155.190 read from T0506.t04.many.frag # found chain 1ijqA in training set Warning: unaligning (T0506)N155 (1ijqA)I567 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G156 (1ijqA)D568 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1ijqA)N570 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ijqA)G571 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :G 1ijqA 569 :V T0506 160 :RNAS 1ijqA 572 :GNRK Number of specific fragments extracted= 2 number of extra gaps= 2 total=35045 # 1bm8.155.63 read from T0506.t04.many.frag # found chain 1bm8 in training set Warning: unaligning (T0506)S163 (1bm8)G75 because Y (epsilon') conformation "forbidden" or filtered. T0506 155 :NGGPARNA 1bm8 67 :QGGFGKYQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=35046 # 1gxrA.155.209 read from T0506.t04.many.frag # found chain 1gxrA in training set Warning: unaligning (T0506)G156 (1gxrA)D644 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1gxrA)R646 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1gxrA)G648 because L (left) conformation "forbidden" or filtered. T0506 155 :N 1gxrA 643 :W T0506 157 :G 1gxrA 645 :L T0506 159 :A 1gxrA 647 :E T0506 161 :NAS 1gxrA 649 :RQL Number of specific fragments extracted= 4 number of extra gaps= 3 total=35050 # 1tp6A.155.109 read from T0506.t04.many.frag # found chain 1tp6A in training set Warning: unaligning (T0506)R160 (1tp6A)G115 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1tp6A)R116 because P (beta_P) conformation "forbidden" or filtered. T0506 155 :NGGPA 1tp6A 110 :HRDDE T0506 162 :AS 1tp6A 117 :LY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35052 # 1pfbA.155.25 read from T0506.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0506)G157 (1pfbA)W50 because E (beta_S) conformation "forbidden" or filtered. T0506 155 :NG 1pfbA 48 :KG T0506 158 :PARNAS 1pfbA 51 :NQRYNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35054 # 1pjxA.155.251 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)G156 (1pjxA)G253 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0506)P158 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 T0506 155 :N 1pjxA 252 :F T0506 159 :ARNAS 1pjxA 256 :GGQPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35056 # 1m4zA.155.179 read from T0506.t04.many.frag # found chain 1m4zA in template set Warning: unaligning (T0506)N155 (1m4zA)C177 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1m4zA)T180 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1m4zA)E182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1m4zA)K183 because L (left) conformation "forbidden" or filtered. T0506 156 :GG 1m4zA 178 :EP T0506 159 :A 1m4zA 181 :G T0506 162 :AS 1m4zA 184 :FV Number of specific fragments extracted= 3 number of extra gaps= 3 total=35059 # 1mspA.155.93 read from T0506.t04.many.frag # found chain 1mspA in template set Warning: unaligning (T0506)N155 (1mspA)T94 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1mspA)T96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1mspA)A101 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :G 1mspA 95 :N T0506 158 :PARN 1mspA 97 :PDGA T0506 163 :S 1mspA 102 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=35062 # 1uebA.155.82 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)G156 (1uebA)D84 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uebA)Y88 because L (left) conformation "forbidden" or filtered. T0506 155 :N 1uebA 83 :M T0506 157 :GPA 1uebA 85 :LET T0506 161 :NAS 1uebA 89 :EQF Number of specific fragments extracted= 3 number of extra gaps= 2 total=35065 # 1tif.156.19 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1tif)G27 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1tif)I28 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :GG 1tif 20 :DQ T0506 159 :ARNA 1tif 23 :GDQL Number of specific fragments extracted= 2 number of extra gaps= 2 total=35067 # 1evlA.156.368 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)P158 (1evlA)R612 because G (3-10) conformation "forbidden" or filtered. T0506 156 :GG 1evlA 610 :TR T0506 159 :ARNASN 1evlA 613 :GKDLGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35069 # 2c1lA.156.335 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)G156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2c1lA)N337 Warning: unaligning (T0506)G157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c1lA)N337 Warning: unaligning (T0506)P158 (2c1lA)R338 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (2c1lA)F342 because E (beta_S) conformation "forbidden" or filtered. T0506 159 :ARN 2c1lA 339 :GKR T0506 163 :SN 2c1lA 343 :GY Number of specific fragments extracted= 2 number of extra gaps= 2 total=35071 # 1oj5A.156.12 read from T0506.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)G156 (1oj5A)Q266 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1oj5A)T268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1oj5A)T269 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1oj5A)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1oj5A)S274 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1oj5A 267 :D T0506 161 :NAS 1oj5A 271 :KII Number of specific fragments extracted= 2 number of extra gaps= 3 total=35073 # 1txvA.156.270 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)G156 (1txvA)D271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1txvA 272 :S T0506 160 :RNA 1txvA 275 :QRL T0506 164 :N 1txvA 279 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=35076 # 1ntvA.156.76 read from T0506.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)P158 (1ntvA)T101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ntvA)G102 because T (delta_L) conformation "forbidden" or filtered. T0506 156 :GG 1ntvA 99 :EK T0506 160 :RNASN 1ntvA 103 :ALQHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35078 # 1xhnA.156.164 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)G157 (1xhnA)Y166 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1xhnA)I172 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :G 1xhnA 165 :D T0506 158 :P 1xhnA 167 :F T0506 160 :RNA 1xhnA 169 :GPK T0506 164 :N 1xhnA 173 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=35082 # 2a5zA.156.202 read from T0506.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0506)A159 (2a5zA)G206 because T (delta_L) conformation "forbidden" or filtered. T0506 156 :GGP 2a5zA 203 :SDS T0506 160 :RNASN 2a5zA 207 :TQLYS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35084 # 1pfbA.156.26 read from T0506.t04.many.frag # found chain 1pfbA in training set T0506 156 :GGPARNASN 1pfbA 49 :GWNQRYNTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=35085 # 1wmhB.156.53 read from T0506.t04.many.frag # found chain 1wmhB in training set Warning: unaligning (T0506)P158 (1wmhB)H65 because G (3-10) conformation "forbidden" or filtered. T0506 156 :GG 1wmhB 63 :DA T0506 159 :ARNASN 1wmhB 66 :GDLLPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35087 # 1m4zA.156.180 read from T0506.t04.many.frag # found chain 1m4zA in template set Warning: unaligning (T0506)G156 (1m4zA)E178 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1m4zA)T180 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1m4zA)G181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1m4zA)E182 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1m4zA 179 :P T0506 161 :NASN 1m4zA 183 :KFVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=35089 # 1iwlA.156.130 read from T0506.t04.many.frag # found chain 1iwlA in training set Warning: unaligning (T0506)G156 (1iwlA)V131 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1iwlA)G135 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :GPA 1iwlA 132 :GRD T0506 161 :NASN 1iwlA 136 :TIHQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=35091 # 2f5tX.156.170 read from T0506.t04.many.frag # found chain 2f5tX in template set Warning: unaligning (T0506)G156 (2f5tX)N280 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPARNASN 2f5tX 281 :LESGRLET Number of specific fragments extracted= 1 number of extra gaps= 1 total=35092 # 1tp6A.156.110 read from T0506.t04.many.frag # found chain 1tp6A in training set Warning: unaligning (T0506)G156 (1tp6A)R111 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 (1tp6A)D112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1tp6A)E114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1tp6A)R116 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :P 1tp6A 113 :D T0506 160 :R 1tp6A 115 :G T0506 162 :ASN 1tp6A 117 :LYW Number of specific fragments extracted= 3 number of extra gaps= 3 total=35095 # 1aihA.156.60 read from T0506.t04.many.frag # found chain 1aihA in template set Warning: unaligning (T0506)A162 (1aihA)N234 because D (zeta) conformation "forbidden" or filtered. T0506 156 :GGPARN 1aihA 228 :NTKSKK T0506 163 :SN 1aihA 235 :RT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35097 # 2ai4A.156.69 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2ai4A)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (2ai4A)A75 because Y (epsilon') conformation "forbidden" or filtered. T0506 156 :GG 2ai4A 67 :TP T0506 159 :A 2ai4A 70 :D T0506 161 :NAS 2ai4A 72 :IID Number of specific fragments extracted= 3 number of extra gaps= 3 total=35100 # 1odmA.156.92 read from T0506.t04.many.frag # found chain 1odmA in training set Warning: unaligning (T0506)G157 (1odmA)I94 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1odmA)E101 because E (beta_S) conformation "forbidden" or filtered. T0506 156 :G 1odmA 93 :S T0506 158 :PARNAS 1odmA 95 :PGKKAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=35102 # 1xipA.156.151 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)G156 (1xipA)D151 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPARNASN 1xipA 152 :LRTKSTKQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=35103 # 2sak.156.17 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)G156 (2sak)D33 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (2sak)K35 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (2sak)G36 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2sak)E38 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :G 2sak 34 :S T0506 160 :R 2sak 37 :N T0506 162 :ASN 2sak 39 :LLS Number of specific fragments extracted= 3 number of extra gaps= 3 total=35106 # 1jovA.156.226 read from T0506.t04.many.frag # found chain 1jovA in training set Warning: unaligning (T0506)P158 (1jovA)W229 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1jovA)K232 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1jovA)G235 because T (delta_L) conformation "forbidden" or filtered. T0506 156 :GG 1jovA 227 :NP T0506 159 :AR 1jovA 230 :HK T0506 162 :AS 1jovA 233 :TS Number of specific fragments extracted= 3 number of extra gaps= 3 total=35109 1jeyA expands to /projects/compbio/data/pdb/1jey.pdb.gz 1jeyA:# 1jeyA.156.319 read from T0506.t04.many.frag # adding 1jeyA to template set # found chain 1jeyA in template set Warning: unaligning (T0506)G157 (1jeyA)I321 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1jeyA)Y322 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1jeyA)G323 because S (epsilon) conformation "forbidden" or filtered. T0506 156 :G 1jeyA 320 :Q T0506 160 :RNASN 1jeyA 324 :SRQII Number of specific fragments extracted= 2 number of extra gaps= 1 total=35111 # 1t0tV.156.149 read from T0506.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0506)G156 (1t0tV)R150 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0506 157 :G 1t0tV 151 :Q T0506 159 :ARNASN 1t0tV 153 :NDNWYM Number of specific fragments extracted= 2 number of extra gaps= 2 total=35113 # 1uxy.156.137 read from T0506.t04.many.frag # found chain 1uxy in training set Warning: unaligning (T0506)G156 (1uxy)E140 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1uxy)G144 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :GPA 1uxy 141 :LAT T0506 161 :NASN 1uxy 145 :KQVR Number of specific fragments extracted= 2 number of extra gaps= 2 total=35115 # 1nezG.156.56 read from T0506.t04.many.frag # found chain 1nezG in template set Warning: unaligning (T0506)G156 (1nezG)A57 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPARNASN 1nezG 58 :SSHNKITW Number of specific fragments extracted= 1 number of extra gaps= 1 total=35116 # 1vzyA.156.267 read from T0506.t04.many.frag # found chain 1vzyA in template set Warning: unaligning (T0506)R160 (1vzyA)N272 because L (left) conformation "forbidden" or filtered. T0506 156 :GGPA 1vzyA 268 :CHFC T0506 161 :NASN 1vzyA 273 :EKYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35118 # 2cx1A.156.69 read from T0506.t04.many.frag # found chain 2cx1A in template set Warning: unaligning (T0506)G157 (2cx1A)W70 because P (beta_P) conformation "forbidden" or filtered. T0506 156 :G 2cx1A 69 :E T0506 158 :PARNASN 2cx1A 71 :SDGRIYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35120 # 1pguA.156.432 read from T0506.t04.many.frag # found chain 1pguA in template set Warning: unaligning (T0506)G156 (1pguA)Q433 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1pguA)F435 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1pguA)T436 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1pguA)G437 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1pguA)K441 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1pguA 434 :S T0506 161 :NAS 1pguA 438 :DII Number of specific fragments extracted= 2 number of extra gaps= 3 total=35122 # 1senA.156.23 read from T0506.t04.many.frag # found chain 1senA in training set Warning: unaligning (T0506)A159 (1senA)G35 because Y (epsilon') conformation "forbidden" or filtered. T0506 156 :GGP 1senA 32 :KGF T0506 160 :RNASN 1senA 36 :DHIHW Number of specific fragments extracted= 2 number of extra gaps= 1 total=35124 # 1pjxA.156.252 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)G156 (1pjxA)G253 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G157 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1pjxA)D255 Warning: unaligning (T0506)P158 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1pjxA)D255 Warning: unaligning (T0506)N164 (1pjxA)M261 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNAS 1pjxA 256 :GGQPK Number of specific fragments extracted= 1 number of extra gaps= 2 total=35125 # 1wn5A.156.77 read from T0506.t04.many.frag # found chain 1wn5A in template set Warning: unaligning (T0506)G156 (1wn5A)G78 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1wn5A)E80 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1wn5A)N81 because L (left) conformation "forbidden" or filtered. T0506 157 :G 1wn5A 79 :N T0506 160 :RNASN 1wn5A 82 :RGILS Number of specific fragments extracted= 2 number of extra gaps= 2 total=35127 # 1tif.157.20 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1tif 21 :Q T0506 159 :ARNASNI 1tif 23 :GDQLGIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35129 # 1evlA.157.369 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)P158 (1evlA)R612 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1evlA)G613 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :G 1evlA 611 :R T0506 160 :RNASNI 1evlA 614 :KDLGSM Number of specific fragments extracted= 2 number of extra gaps= 1 total=35131 # 1oj5A.157.13 read from T0506.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)G157 (1oj5A)D267 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1oj5A)T268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1oj5A)K271 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :AR 1oj5A 269 :TG T0506 162 :ASNI 1oj5A 272 :IISI Number of specific fragments extracted= 2 number of extra gaps= 2 total=35133 # 1m4zA.157.181 read from T0506.t04.many.frag # found chain 1m4zA in template set Warning: unaligning (T0506)P158 (1m4zA)T180 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1m4zA)G181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1m4zA)E182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1m4zA)K183 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1m4zA)D186 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :G 1m4zA 179 :P T0506 162 :AS 1m4zA 184 :FV T0506 165 :I 1m4zA 187 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=35136 # 2c1lA.157.336 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)G157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2c1lA)N337 Warning: unaligning (T0506)P158 (2c1lA)R338 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (2c1lA)G343 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNA 2c1lA 339 :GKRF T0506 164 :NI 2c1lA 344 :YI Number of specific fragments extracted= 2 number of extra gaps= 2 total=35138 # 1txvA.157.271 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1txvA 272 :S T0506 160 :RNA 1txvA 275 :QRL T0506 164 :NI 1txvA 279 :RL Number of specific fragments extracted= 3 number of extra gaps= 2 total=35141 # 2b06A.157.102 read from T0506.t04.many.frag # found chain 2b06A in template set Warning: unaligning (T0506)R160 (2b06A)G106 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2b06A)E107 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPA 2b06A 103 :SEE T0506 162 :ASNI 2b06A 108 :VSWV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35143 # 1senA.157.24 read from T0506.t04.many.frag # found chain 1senA in training set Warning: unaligning (T0506)A159 (1senA)G35 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1senA)D36 because G (3-10) conformation "forbidden" or filtered. T0506 157 :GP 1senA 33 :GF T0506 161 :NASNI 1senA 37 :HIHWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35145 2cyjA expands to /projects/compbio/data/pdb/2cyj.pdb.gz 2cyjA:Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 2cyjA Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 2cyjA Skipped atom 599, because occupancy 0.400 <= existing 0.600 in 2cyjA Skipped atom 601, because occupancy 0.400 <= existing 0.600 in 2cyjA # 2cyjA.157.24 read from T0506.t04.many.frag # adding 2cyjA to template set # found chain 2cyjA in template set Warning: unaligning (T0506)R160 (2cyjA)G28 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :GPA 2cyjA 25 :YPS T0506 161 :NASNI 2cyjA 29 :RIERR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35147 # 1ntvA.157.77 read from T0506.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)P158 (1ntvA)T101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1ntvA)G102 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :G 1ntvA 100 :K T0506 160 :RNASNI 1ntvA 103 :ALQHHH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35149 # 1pfbA.157.27 read from T0506.t04.many.frag # found chain 1pfbA in training set T0506 157 :GPARNASNI 1pfbA 50 :WNQRYNTWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35150 # 2a5zA.157.203 read from T0506.t04.many.frag # found chain 2a5zA in template set Warning: unaligning (T0506)A159 (2a5zA)G206 because T (delta_L) conformation "forbidden" or filtered. T0506 157 :GP 2a5zA 204 :DS T0506 160 :RNASNI 2a5zA 207 :TQLYSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35152 # 1t0tV.157.150 read from T0506.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0506)P158 (1t0tV)G152 because S (epsilon) conformation "forbidden" or filtered. T0506 157 :G 1t0tV 151 :Q T0506 159 :ARNASNI 1t0tV 153 :NDNWYML Number of specific fragments extracted= 2 number of extra gaps= 1 total=35154 # 1tp6A.157.111 read from T0506.t04.many.frag # found chain 1tp6A in training set Warning: unaligning (T0506)G157 (1tp6A)D112 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1tp6A)E114 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1tp6A)G115 because T (delta_L) conformation "forbidden" or filtered. T0506 158 :P 1tp6A 113 :D T0506 161 :NASNI 1tp6A 116 :RLYWR Number of specific fragments extracted= 2 number of extra gaps= 2 total=35156 # 1jeyA.157.320 read from T0506.t04.many.frag # found chain 1jeyA in template set Warning: unaligning (T0506)P158 (1jeyA)Y322 because E (beta_S) conformation "forbidden" or filtered. T0506 157 :G 1jeyA 321 :I T0506 159 :ARNASNI 1jeyA 323 :GSRQIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35158 # 2cy5A.157.65 read from T0506.t04.many.frag # found chain 2cy5A in template set T0506 157 :GPARNASNI 2cy5A 91 :VSKEELESY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35159 # 1vzyA.157.268 read from T0506.t04.many.frag # found chain 1vzyA in template set Warning: unaligning (T0506)R160 (1vzyA)N272 because L (left) conformation "forbidden" or filtered. T0506 157 :GPA 1vzyA 269 :HFC T0506 161 :NASNI 1vzyA 273 :EKYLF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35161 # 2f5tX.157.171 read from T0506.t04.many.frag # found chain 2f5tX in template set Warning: unaligning (T0506)R160 (2f5tX)G284 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2f5tX)R285 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPA 2f5tX 281 :LES T0506 162 :ASNI 2f5tX 286 :LETL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35163 # 1iwlA.157.131 read from T0506.t04.many.frag # found chain 1iwlA in training set Warning: unaligning (T0506)R160 (1iwlA)G135 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1iwlA)Q139 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :GPA 1iwlA 132 :GRD T0506 161 :NAS 1iwlA 136 :TIH T0506 165 :I 1iwlA 140 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=35166 # 1oeyA.157.50 read from T0506.t04.many.frag # found chain 1oeyA in template set Warning: unaligning (T0506)G157 (1oeyA)R397 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P158 (1oeyA)D398 because L (left) conformation "forbidden" or filtered. T0506 159 :ARNASNI 1oeyA 399 :SNELVPL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35167 # 1wcdJ.157.130 read from T0506.t04.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)A162 (1wcdJ)L136 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1wcdJ)T137 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 (1wcdJ)V139 because G (3-10) conformation "forbidden" or filtered. T0506 157 :GPARN 1wcdJ 131 :GSLSE T0506 164 :N 1wcdJ 138 :D Number of specific fragments extracted= 2 number of extra gaps= 2 total=35169 # 1vioA.157.215 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)N164 (1vioA)P221 because P (beta_P) conformation "forbidden" or filtered. T0506 157 :GPARNAS 1vioA 214 :LEEGEYR T0506 165 :I 1vioA 222 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=35171 # 2ai4A.157.70 read from T0506.t04.many.frag # found chain 2ai4A in template set Warning: unaligning (T0506)P158 (2ai4A)F69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (2ai4A)G71 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (2ai4A)A75 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 2ai4A 68 :P T0506 159 :A 2ai4A 70 :D T0506 161 :NAS 2ai4A 72 :IID T0506 165 :I 2ai4A 76 :V Number of specific fragments extracted= 4 number of extra gaps= 3 total=35175 1vf7A expands to /projects/compbio/data/pdb/1vf7.pdb.gz 1vf7A:# 1vf7A.157.65 read from T0506.t04.many.frag # adding 1vf7A to template set # found chain 1vf7A in template set Warning: unaligning (T0506)G157 (1vf7A)K63 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1vf7A)G65 because T (delta_L) conformation "forbidden" or filtered. T0506 158 :P 1vf7A 64 :A T0506 160 :RNASNI 1vf7A 66 :QQLYQI Number of specific fragments extracted= 2 number of extra gaps= 2 total=35177 # 1aihA.157.61 read from T0506.t04.many.frag # found chain 1aihA in template set Warning: unaligning (T0506)R160 (1aihA)K232 because L (left) conformation "forbidden" or filtered. T0506 157 :GPA 1aihA 229 :TKS T0506 161 :NASNI 1aihA 233 :KNRTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35179 # 1oznA.157.267 read from T0506.t04.many.frag # found chain 1oznA in training set T0506 157 :GPARNASNI 1oznA 293 :LAGRDLKRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35180 # 1r6xA.157.346 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)P158 (1r6xA)T349 because Y (epsilon') conformation "forbidden" or filtered. T0506 157 :G 1r6xA 348 :T T0506 159 :ARNASNI 1r6xA 350 :KTRTLNI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35182 # 1je5A.157.131 read from T0506.t04.many.frag # found chain 1je5A in template set Warning: unaligning (T0506)P158 (1je5A)K133 because G (3-10) conformation "forbidden" or filtered. T0506 157 :G 1je5A 132 :S T0506 159 :ARNASNI 1je5A 134 :GKKMEDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35184 # 1wmmA.157.123 read from T0506.t04.many.frag # found chain 1wmmA in template set Warning: unaligning (T0506)G157 (1wmmA)F124 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1wmmA)E131 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :PARNAS 1wmmA 125 :FGKAMR T0506 165 :I 1wmmA 132 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=35186 # 1i4wA.157.309 read from T0506.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0506)G157 (1i4wA)L298 because G (3-10) conformation "forbidden" or filtered. T0506 158 :PARNASNI 1i4wA 299 :LKKCPIDL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35187 # 1tif.158.21 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)P158 (1tif)N22 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1tif)G27 because S (epsilon) conformation "forbidden" or filtered. T0506 159 :ARNA 1tif 23 :GDQL T0506 164 :NIT 1tif 28 :IKS Number of specific fragments extracted= 2 number of extra gaps= 2 total=35189 # 2b06A.158.103 read from T0506.t04.many.frag # found chain 2b06A in template set T0506 158 :PARNASNIT 2b06A 104 :EEGEVSWVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35190 # 1evlA.158.370 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)P158 (1evlA)R612 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1evlA)G617 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1evlA)S618 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :ARNA 1evlA 613 :GKDL T0506 165 :IT 1evlA 619 :MD Number of specific fragments extracted= 2 number of extra gaps= 2 total=35192 # 1m4zA.158.182 read from T0506.t04.many.frag # found chain 1m4zA in template set Warning: unaligning (T0506)P158 (1m4zA)T180 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1m4zA)G181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1m4zA)K183 because L (left) conformation "forbidden" or filtered. T0506 160 :R 1m4zA 182 :E T0506 162 :ASNIT 1m4zA 184 :FVDIN Number of specific fragments extracted= 2 number of extra gaps= 2 total=35194 # 2c1lA.158.337 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)P158 (2c1lA)R338 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (2c1lA)G343 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNA 2c1lA 339 :GKRF T0506 164 :NIT 2c1lA 344 :YIS Number of specific fragments extracted= 2 number of extra gaps= 2 total=35196 # 1vzyA.158.269 read from T0506.t04.many.frag # found chain 1vzyA in template set Warning: unaligning (T0506)R160 (1vzyA)N272 because L (left) conformation "forbidden" or filtered. T0506 158 :PA 1vzyA 270 :FC T0506 161 :NASNIT 1vzyA 273 :EKYLFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35198 # 1pfbA.158.28 read from T0506.t04.many.frag # found chain 1pfbA in training set T0506 158 :PARNASNIT 1pfbA 51 :NQRYNTWEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35199 # 1t0tV.158.151 read from T0506.t04.many.frag # found chain 1t0tV in training set T0506 158 :PARNASNIT 1t0tV 152 :GNDNWYMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35200 # 1oj5A.158.14 read from T0506.t04.many.frag # found chain 1oj5A in template set Warning: unaligning (T0506)P158 (1oj5A)T268 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1oj5A)G270 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1oj5A)K271 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1oj5A)S274 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :A 1oj5A 269 :T T0506 162 :AS 1oj5A 272 :II T0506 165 :IT 1oj5A 275 :ID Number of specific fragments extracted= 3 number of extra gaps= 3 total=35203 # 1sg6A.158.374 read from T0506.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0506)N161 (1sg6A)R378 because Y (epsilon') conformation "forbidden" or filtered. T0506 158 :PAR 1sg6A 375 :YET T0506 162 :ASNIT 1sg6A 379 :ASVVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35205 # 2cyjA.158.25 read from T0506.t04.many.frag # found chain 2cyjA in template set Warning: unaligning (T0506)R160 (2cyjA)G28 because T (delta_L) conformation "forbidden" or filtered. T0506 158 :PA 2cyjA 26 :PS T0506 161 :NASNIT 2cyjA 29 :RIERRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=35207 # 1jeyA.158.321 read from T0506.t04.many.frag # found chain 1jeyA in template set Warning: unaligning (T0506)P158 (1jeyA)Y322 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1jeyA)G323 because S (epsilon) conformation "forbidden" or filtered. T0506 160 :RNASNIT 1jeyA 324 :SRQIILE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35208 # 1i4wA.158.310 read from T0506.t04.many.frag # found chain 1i4wA in template set T0506 158 :PARNASNIT 1i4wA 299 :LKKCPIDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35209 # 1uebA.158.85 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)R160 (1uebA)Y88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1uebA)Q90 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :PA 1uebA 86 :ET T0506 161 :N 1uebA 89 :E T0506 163 :SNIT 1uebA 91 :FAVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=35212 # 1senA.158.25 read from T0506.t04.many.frag # found chain 1senA in training set Warning: unaligning (T0506)A159 (1senA)G35 because Y (epsilon') conformation "forbidden" or filtered. T0506 158 :P 1senA 34 :F T0506 160 :RNASNIT 1senA 36 :DHIHWRT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35214 # 1ntvA.158.78 read from T0506.t04.many.frag # found chain 1ntvA in training set Warning: unaligning (T0506)P158 (1ntvA)T101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1ntvA)A103 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :A 1ntvA 102 :G T0506 161 :NASNIT 1ntvA 104 :LQHHHA Number of specific fragments extracted= 2 number of extra gaps= 2 total=35216 # 2bvcA.158.408 read from T0506.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0506)P158 (2bvcA)V401 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (2bvcA)E407 because G (3-10) conformation "forbidden" or filtered. T0506 159 :ARNAS 2bvcA 402 :DKDLY T0506 165 :IT 2bvcA 408 :LP Number of specific fragments extracted= 2 number of extra gaps= 2 total=35218 # 1vioA.158.216 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)R160 (1vioA)G217 because T (delta_L) conformation "forbidden" or filtered. T0506 158 :PA 1vioA 215 :EE T0506 161 :NASNIT 1vioA 218 :EYRPLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35220 # 1oznA.158.268 read from T0506.t04.many.frag # found chain 1oznA in training set T0506 158 :PARNASNIT 1oznA 294 :AGRDLKRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35221 # 1txvA.158.272 read from T0506.t04.many.frag # found chain 1txvA in template set Warning: unaligning (T0506)P158 (1txvA)Y273 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A159 (1txvA)Y274 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1txvA)H278 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNA 1txvA 275 :QRL T0506 164 :NIT 1txvA 279 :RLR Number of specific fragments extracted= 2 number of extra gaps= 2 total=35223 # 1r6xA.158.347 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)P158 (1r6xA)T349 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1r6xA 350 :KTRTLNIS Number of specific fragments extracted= 1 number of extra gaps= 1 total=35224 # 2cy5A.158.66 read from T0506.t04.many.frag # found chain 2cy5A in template set Warning: unaligning (T0506)N161 (2cy5A)E95 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (2cy5A)E97 because Y (epsilon') conformation "forbidden" or filtered. T0506 158 :PAR 2cy5A 92 :SKE T0506 162 :A 2cy5A 96 :L T0506 164 :NIT 2cy5A 98 :SYP Number of specific fragments extracted= 3 number of extra gaps= 2 total=35227 # 1g8kA.158.620 read from T0506.t04.many.frag # found chain 1g8kA in training set T0506 158 :PARNASNIT 1g8kA 621 :GGSTGHLVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35228 # 1vf7A.158.66 read from T0506.t04.many.frag # found chain 1vf7A in template set Warning: unaligning (T0506)A159 (1vf7A)G65 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1vf7A)Q67 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :P 1vf7A 64 :A T0506 160 :R 1vf7A 66 :Q T0506 162 :ASNIT 1vf7A 68 :LYQID Number of specific fragments extracted= 3 number of extra gaps= 2 total=35231 # 1oeyA.158.51 read from T0506.t04.many.frag # found chain 1oeyA in template set Warning: unaligning (T0506)P158 (1oeyA)D398 because L (left) conformation "forbidden" or filtered. T0506 159 :ARNASNIT 1oeyA 399 :SNELVPLS Number of specific fragments extracted= 1 number of extra gaps= 1 total=35232 # 2f5tX.158.172 read from T0506.t04.many.frag # found chain 2f5tX in template set Warning: unaligning (T0506)N161 (2f5tX)R285 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :PAR 2f5tX 282 :ESG T0506 162 :ASNIT 2f5tX 286 :LETLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35234 # 1tp6A.158.112 read from T0506.t04.many.frag # found chain 1tp6A in training set Warning: unaligning (T0506)R160 (1tp6A)G115 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1tp6A)W119 because P (beta_P) conformation "forbidden" or filtered. T0506 158 :PA 1tp6A 113 :DE T0506 161 :NAS 1tp6A 116 :RLY T0506 165 :IT 1tp6A 120 :RH Number of specific fragments extracted= 3 number of extra gaps= 2 total=35237 # 1wcdJ.158.131 read from T0506.t04.many.frag # found chain 1wcdJ in template set Warning: unaligning (T0506)I165 (1wcdJ)V139 because G (3-10) conformation "forbidden" or filtered. T0506 158 :PARNASN 1wcdJ 132 :SLSELTD T0506 166 :T 1wcdJ 140 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=35239 # 1fr2A.158.2 read from T0506.t04.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)P158 because first residue in template chain is (1fr2A)L3 Warning: unaligning (T0506)A159 (1fr2A)K4 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1fr2A)T11 Warning: unaligning (T0506)T166 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1fr2A)T11 T0506 160 :RNASN 1fr2A 5 :HSISD Number of specific fragments extracted= 1 number of extra gaps= 1 total=35240 # 1qauA.158.54 read from T0506.t04.many.frag # found chain 1qauA in training set Warning: unaligning (T0506)A159 (1qauA)D69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1qauA)R70 because D (zeta) conformation "forbidden" or filtered. T0506 158 :P 1qauA 68 :N T0506 161 :NASNIT 1qauA 71 :PLVDLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35242 # 1tif.159.22 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)A159 (1tif)G23 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1tif 24 :DQLGIKSK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35243 # 2b06A.159.104 read from T0506.t04.many.frag # found chain 2b06A in template set T0506 159 :ARNASNITP 2b06A 105 :EGEVSWVQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35244 # 1m4zA.159.183 read from T0506.t04.many.frag # found chain 1m4zA in template set Warning: unaligning (T0506)A159 (1m4zA)G181 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R160 (1m4zA)E182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1m4zA)K183 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1m4zA)D186 because P (beta_P) conformation "forbidden" or filtered. T0506 162 :AS 1m4zA 184 :FV T0506 165 :ITP 1m4zA 187 :INI Number of specific fragments extracted= 2 number of extra gaps= 2 total=35246 # 1vzyA.159.270 read from T0506.t04.many.frag # found chain 1vzyA in template set Warning: unaligning (T0506)R160 (1vzyA)N272 because L (left) conformation "forbidden" or filtered. T0506 159 :A 1vzyA 271 :C T0506 161 :NASNITP 1vzyA 273 :EKYLFTK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35248 # 1i4wA.159.311 read from T0506.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0506)A159 (1i4wA)K300 because G (3-10) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1i4wA 301 :KCPIDLTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35249 # 1t0tV.159.152 read from T0506.t04.many.frag # found chain 1t0tV in training set Warning: unaligning (T0506)A159 (1t0tV)N153 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1t0tV)Y157 because G (3-10) conformation "forbidden" or filtered. T0506 160 :RNA 1t0tV 154 :DNW T0506 164 :NITP 1t0tV 158 :MLSM Number of specific fragments extracted= 2 number of extra gaps= 2 total=35251 # 1sg6A.159.375 read from T0506.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0506)N161 (1sg6A)R378 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :AR 1sg6A 376 :ET T0506 162 :ASNITP 1sg6A 379 :ASVVAN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35253 # 1evlA.159.371 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)A159 (1evlA)G613 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1evlA 614 :KDLGSMDV Number of specific fragments extracted= 1 number of extra gaps= 1 total=35254 # 1pfbA.159.29 read from T0506.t04.many.frag # found chain 1pfbA in training set Warning: unaligning (T0506)N164 (1pfbA)W57 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :ARNAS 1pfbA 52 :QRYNT T0506 165 :ITP 1pfbA 58 :EPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35256 # 2bvcA.159.409 read from T0506.t04.many.frag # found chain 2bvcA in template set T0506 159 :ARNASNITP 2bvcA 402 :DKDLYELPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35257 # 1uebA.159.86 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)R160 (1uebA)Y88 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1uebA)E89 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :A 1uebA 87 :T T0506 162 :ASNITP 1uebA 90 :QFAVPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35259 # 2c1lA.159.338 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)A159 (2c1lA)G339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (2c1lA)R341 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :R 2c1lA 340 :K T0506 162 :ASNITP 2c1lA 342 :FGYISN Number of specific fragments extracted= 2 number of extra gaps= 2 total=35261 # 1qauA.159.55 read from T0506.t04.many.frag # found chain 1qauA in training set Warning: unaligning (T0506)A162 (1qauA)L72 because G (3-10) conformation "forbidden" or filtered. T0506 159 :ARN 1qauA 69 :DRP T0506 163 :SNITP 1qauA 73 :VDLSY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35263 # 2cyjA.159.26 read from T0506.t04.many.frag # found chain 2cyjA in template set Warning: unaligning (T0506)N164 (2cyjA)R32 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :ARNAS 2cyjA 27 :SGRIE T0506 165 :ITP 2cyjA 33 :RMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35265 # 1fr2A.159.3 read from T0506.t04.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1fr2A)T11 Warning: unaligning (T0506)T166 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1fr2A)T11 T0506 159 :ARNASN 1fr2A 4 :KHSISD T0506 167 :P 1fr2A 12 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=35267 # 1vioA.159.217 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)R160 (1vioA)G217 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1vioA)E218 because P (beta_P) conformation "forbidden" or filtered. T0506 159 :A 1vioA 216 :E T0506 162 :ASNITP 1vioA 219 :YRPLTQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35269 # 1senA.159.26 read from T0506.t04.many.frag # found chain 1senA in training set Warning: unaligning (T0506)A159 (1senA)G35 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNASNITP 1senA 36 :DHIHWRTL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35270 # 1g8kA.159.621 read from T0506.t04.many.frag # found chain 1g8kA in training set Warning: unaligning (T0506)A159 (1g8kA)G622 because S (epsilon) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1g8kA 623 :STGHLVTY Number of specific fragments extracted= 1 number of extra gaps= 1 total=35271 # 1oznA.159.269 read from T0506.t04.many.frag # found chain 1oznA in training set Warning: unaligning (T0506)A159 (1oznA)G295 because T (delta_L) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1oznA 296 :RDLKRLAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35272 # 1kgdA.159.50 read from T0506.t04.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)A159 (1kgdA)G780 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1kgdA)N782 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1kgdA)F785 because P (beta_P) conformation "forbidden" or filtered. T0506 160 :R 1kgdA 781 :K T0506 162 :AS 1kgdA 783 :YY T0506 165 :ITP 1kgdA 786 :VSH Number of specific fragments extracted= 3 number of extra gaps= 3 total=35275 # 1r6xA.159.348 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)N164 (1r6xA)N355 because E (beta_S) conformation "forbidden" or filtered. T0506 159 :ARNAS 1r6xA 350 :KTRTL T0506 165 :ITP 1r6xA 356 :ISG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35277 # 1ik9A.159.40 read from T0506.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0506)S163 (1ik9A)G45 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNA 1ik9A 41 :SAWT T0506 164 :NITP 1ik9A 46 :TVSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35279 1puc expands to /projects/compbio/data/pdb/1puc.pdb.gz 1puc:Warning: there is no chain 1puc will retry with 1pucA Skipped atom 780, because occupancy 0.400 <= existing 0.600 in 1puc Skipped atom 782, because occupancy 0.400 <= existing 0.600 in 1puc Skipped atom 784, because occupancy 0.400 <= existing 0.600 in 1puc Skipped atom 786, because occupancy 0.400 <= existing 0.600 in 1puc # 1puc.159.58 read from T0506.t04.many.frag # adding 1puc to template set # found chain 1puc in template set Warning: unaligning (T0506)R160 (1puc)G61 because T (delta_L) conformation "forbidden" or filtered. T0506 159 :A 1puc 60 :T T0506 161 :NASNITP 1puc 62 :TLRILQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35281 # 2ezvA.159.1 read from T0506.t04.many.frag # found chain 2ezvA in template set T0506 159 :ARNASNITP 2ezvA 2 :HQDYRELSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35282 # 1jeyA.159.322 read from T0506.t04.many.frag # found chain 1jeyA in template set Warning: unaligning (T0506)A159 (1jeyA)G323 because S (epsilon) conformation "forbidden" or filtered. T0506 160 :RNASNITP 1jeyA 324 :SRQIILEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35283 # 1wcdJ.159.132 read from T0506.t04.many.frag # found chain 1wcdJ in template set T0506 159 :ARNASNITP 1wcdJ 133 :LSELTDVSY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35284 # 3vub.159.64 read from T0506.t04.many.frag # found chain 3vub in training set Warning: unaligning (T0506)S163 (3vub)A69 because Y (epsilon') conformation "forbidden" or filtered. T0506 159 :ARNA 3vub 65 :TTDM T0506 164 :NITP 3vub 70 :SVPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35286 # 1l1dA.159.127 read from T0506.t04.many.frag # found chain 1l1dA in template set Warning: unaligning (T0506)N161 (1l1dA)S500 because G (3-10) conformation "forbidden" or filtered. T0506 159 :AR 1l1dA 498 :GA T0506 162 :ASNITP 1l1dA 501 :LKFIPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35288 # 1jakA.159.317 read from T0506.t04.many.frag # found chain 1jakA in training set Warning: unaligning (T0506)N161 (1jakA)E314 because L (left) conformation "forbidden" or filtered. T0506 159 :AR 1jakA 312 :GD T0506 162 :ASNITP 1jakA 315 :AHSTPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35290 1tfr expands to /projects/compbio/data/pdb/1tfr.pdb.gz 1tfr:Warning: there is no chain 1tfr will retry with 1tfrA # 1tfr.159.217 read from T0506.t04.many.frag # adding 1tfr to template set # found chain 1tfr in template set T0506 159 :ARNASNITP 1tfr 218 :GERTPSMKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35291 # 1tif.160.23 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)R160 (1tif)D24 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1tif)G27 because S (epsilon) conformation "forbidden" or filtered. T0506 161 :NA 1tif 25 :QL T0506 164 :NITPA 1tif 28 :IKSKQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=35293 # 1i4wA.160.312 read from T0506.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0506)N164 (1i4wA)D305 because G (3-10) conformation "forbidden" or filtered. T0506 160 :RNAS 1i4wA 301 :KCPI T0506 165 :ITPA 1i4wA 306 :LTND Number of specific fragments extracted= 2 number of extra gaps= 1 total=35295 # 2b06A.160.105 read from T0506.t04.many.frag # found chain 2b06A in template set T0506 160 :RNASNITPA 2b06A 106 :GEVSWVQKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35296 # 1t0tV.160.153 read from T0506.t04.many.frag # found chain 1t0tV in training set T0506 160 :RNASNITPA 1t0tV 154 :DNWYMLSME Number of specific fragments extracted= 1 number of extra gaps= 0 total=35297 # 1sg6A.160.376 read from T0506.t04.many.frag # found chain 1sg6A in training set Warning: unaligning (T0506)R160 (1sg6A)T377 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)N161 (1sg6A)R378 because Y (epsilon') conformation "forbidden" or filtered. T0506 162 :ASNITPA 1sg6A 379 :ASVVANE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35298 # 2bvcA.160.410 read from T0506.t04.many.frag # found chain 2bvcA in template set T0506 160 :RNASNITPA 2bvcA 403 :KDLYELPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35299 1yt8A expands to /projects/compbio/data/pdb/1yt8.pdb.gz 1yt8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yt8A.160.373 read from T0506.t04.many.frag # adding 1yt8A to template set # found chain 1yt8A in template set T0506 160 :RNASNITPA 1yt8A 374 :PRADTIDPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35300 # 1fr2A.160.4 read from T0506.t04.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)N161 (1fr2A)S6 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1fr2A)T11 Warning: unaligning (T0506)T166 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1fr2A)T11 T0506 160 :R 1fr2A 5 :H T0506 162 :ASN 1fr2A 7 :ISD T0506 167 :PA 1fr2A 12 :EA Number of specific fragments extracted= 3 number of extra gaps= 2 total=35303 # 1evlA.160.372 read from T0506.t04.many.frag # found chain 1evlA in training set Warning: unaligning (T0506)S163 (1evlA)G617 because S (epsilon) conformation "forbidden" or filtered. T0506 160 :RNA 1evlA 614 :KDL T0506 164 :NITPA 1evlA 618 :SMDVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35305 # 1m4zA.160.184 read from T0506.t04.many.frag # found chain 1m4zA in template set Warning: unaligning (T0506)R160 (1m4zA)E182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1m4zA)F184 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1m4zA)D186 because P (beta_P) conformation "forbidden" or filtered. T0506 161 :N 1m4zA 183 :K T0506 163 :S 1m4zA 185 :V T0506 165 :ITPA 1m4zA 187 :INIE Number of specific fragments extracted= 3 number of extra gaps= 3 total=35308 # 1uebA.160.87 read from T0506.t04.many.frag # found chain 1uebA in training set Warning: unaligning (T0506)R160 (1uebA)Y88 because L (left) conformation "forbidden" or filtered. T0506 161 :NASNITPA 1uebA 89 :EQFAVPRS Number of specific fragments extracted= 1 number of extra gaps= 1 total=35309 # 1vzyA.160.271 read from T0506.t04.many.frag # found chain 1vzyA in template set Warning: unaligning (T0506)R160 (1vzyA)N272 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1vzyA)L276 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :NAS 1vzyA 273 :EKY T0506 165 :ITPA 1vzyA 277 :FTKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=35311 # 1qauA.160.56 read from T0506.t04.many.frag # found chain 1qauA in training set Warning: unaligning (T0506)A162 (1qauA)L72 because G (3-10) conformation "forbidden" or filtered. T0506 160 :RN 1qauA 70 :RP T0506 163 :SNITPA 1qauA 73 :VDLSYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35313 # 2ezvA.160.2 read from T0506.t04.many.frag # found chain 2ezvA in template set T0506 160 :RNASNITPA 2ezvA 3 :QDYRELSLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35314 # 1kgdA.160.51 read from T0506.t04.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)N161 (1kgdA)N782 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1kgdA)Y783 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :R 1kgdA 781 :K T0506 163 :SNITPA 1kgdA 784 :YFVSHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35316 # 1g8kA.160.622 read from T0506.t04.many.frag # found chain 1g8kA in training set T0506 160 :RNASNITPA 1g8kA 623 :STGHLVTYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35317 # 1r6xA.160.349 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 160 :RNASNITPA 1r6xA 351 :TRTLNISGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35318 2d1pC expands to /projects/compbio/data/pdb/2d1p.pdb.gz 2d1pC:# 2d1pC.160.6 read from T0506.t04.many.frag # adding 2d1pC to template set # found chain 2d1pC in template set T0506 160 :RNASNITPA 2d1pC 7 :RSPWLTDFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35319 2a6aA expands to /projects/compbio/data/pdb/2a6a.pdb.gz 2a6aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2a6aA.160.144 read from T0506.t04.many.frag # adding 2a6aA to template set # found chain 2a6aA in template set T0506 160 :RNASNITPA 2a6aA 133 :KEPSVVSDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35320 # 2c1lA.160.339 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)N161 (2c1lA)R341 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (2c1lA)G343 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (2c1lA)Y344 because E (beta_S) conformation "forbidden" or filtered. T0506 160 :R 2c1lA 340 :K T0506 162 :A 2c1lA 342 :F T0506 165 :ITPA 2c1lA 345 :ISNE Number of specific fragments extracted= 3 number of extra gaps= 2 total=35323 # 1vioA.160.218 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)R160 (1vioA)G217 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1vioA)Y219 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :N 1vioA 218 :E T0506 163 :SNITPA 1vioA 220 :RPLTQS Number of specific fragments extracted= 2 number of extra gaps= 2 total=35325 # 1ik9A.160.41 read from T0506.t04.many.frag # found chain 1ik9A in template set T0506 160 :RNASNITPA 1ik9A 42 :AWTGTVSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=35326 # 1sz2A.160.218 read from T0506.t04.many.frag # found chain 1sz2A in template set T0506 160 :RNASNITPA 1sz2A 208 :RLPENLKPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35327 # 1uj8A.160.32 read from T0506.t04.many.frag # found chain 1uj8A in training set Warning: unaligning (T0506)N161 (1uj8A)D34 because P (beta_P) conformation "forbidden" or filtered. T0506 160 :R 1uj8A 33 :L T0506 162 :ASNITPA 1uj8A 35 :PKTVRFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35329 1tjvA expands to /projects/compbio/data/pdb/1tjv.pdb.gz 1tjvA:# 1tjvA.160.404 read from T0506.t04.many.frag # adding 1tjvA to template set # found chain 1tjvA in template set T0506 160 :RNASNITPA 1tjvA 405 :ITINKLSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35330 # 1xhnA.160.167 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)R160 (1xhnA)G168 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A162 (1xhnA)P170 because P (beta_P) conformation "forbidden" or filtered. T0506 161 :N 1xhnA 169 :G T0506 163 :SNITPA 1xhnA 171 :KIVTPE Number of specific fragments extracted= 2 number of extra gaps= 2 total=35332 1sa3A expands to /projects/compbio/data/pdb/1sa3.pdb.gz 1sa3A:# 1sa3A.160.125 read from T0506.t04.many.frag # adding 1sa3A to template set # found chain 1sa3A in template set Warning: unaligning (T0506)S163 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. T0506 160 :RNA 1sa3A 126 :VSI T0506 164 :NITPA 1sa3A 130 :EYDVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35334 # 1puc.160.59 read from T0506.t04.many.frag # found chain 1puc in template set Warning: unaligning (T0506)S163 (1puc)R64 because P (beta_P) conformation "forbidden" or filtered. T0506 160 :RNA 1puc 61 :GTL T0506 164 :NITPA 1puc 65 :ILQEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35336 # 1io0A.160.43 read from T0506.t04.many.frag # found chain 1io0A in training set Warning: unaligning (T0506)N161 (1io0A)N204 because L (left) conformation "forbidden" or filtered. T0506 160 :R 1io0A 203 :N T0506 162 :ASNITPA 1io0A 205 :IMNIPVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35338 1dj7A expands to /projects/compbio/data/pdb/1dj7.pdb.gz 1dj7A:# 1dj7A.160.98 read from T0506.t04.many.frag # adding 1dj7A to template set # found chain 1dj7A in template set Warning: unaligning (T0506)R160 (1dj7A)G99 because P (beta_P) conformation "forbidden" or filtered. T0506 161 :NASNITPA 1dj7A 100 :DAQDIPME Number of specific fragments extracted= 1 number of extra gaps= 1 total=35339 # 1i4wA.161.313 read from T0506.t04.many.frag # found chain 1i4wA in template set Warning: unaligning (T0506)N161 (1i4wA)C302 because E (beta_S) conformation "forbidden" or filtered. T0506 162 :ASNITPAD 1i4wA 303 :PIDLTNDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35340 # 1yt8A.161.374 read from T0506.t04.many.frag # found chain 1yt8A in template set Warning: unaligning (T0506)N161 (1yt8A)R375 because P (beta_P) conformation "forbidden" or filtered. T0506 162 :ASNITPAD 1yt8A 376 :ADTIDPTT Number of specific fragments extracted= 1 number of extra gaps= 1 total=35341 # 2b06A.161.106 read from T0506.t04.many.frag # found chain 2b06A in template set T0506 161 :NASNITPAD 2b06A 107 :EVSWVQKDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35342 # 1tif.161.24 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)S163 (1tif)G27 because S (epsilon) conformation "forbidden" or filtered. T0506 161 :NA 1tif 25 :QL T0506 164 :NITPAD 1tif 28 :IKSKQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35344 # 1sg6A.161.377 read from T0506.t04.many.frag # found chain 1sg6A in training set T0506 161 :NASNITPAD 1sg6A 378 :RASVVANED Number of specific fragments extracted= 1 number of extra gaps= 0 total=35345 # 1sz2A.161.219 read from T0506.t04.many.frag # found chain 1sz2A in template set T0506 161 :NASNITPAD 1sz2A 209 :LPENLKPKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35346 # 1xhnA.161.168 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 161 :NASNITPAD 1xhnA 169 :GPKIVTPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35347 1vrbA expands to /projects/compbio/data/pdb/1vrb.pdb.gz 1vrbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vrbA.161.90 read from T0506.t04.many.frag # adding 1vrbA to template set # found chain 1vrbA in template set Warning: unaligning (T0506)A162 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vrbA)R80 Warning: unaligning (T0506)N164 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vrbA)V83 Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vrbA)V83 T0506 163 :S 1vrbA 81 :F T0506 166 :TPAD 1vrbA 84 :SPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35349 # 1kgdA.161.52 read from T0506.t04.many.frag # found chain 1kgdA in training set T0506 161 :NASNITPAD 1kgdA 782 :NYYFVSHDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35350 # 1t0tV.161.154 read from T0506.t04.many.frag # found chain 1t0tV in training set T0506 161 :NASNITPAD 1t0tV 155 :NWYMLSMEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35351 # 1uebA.161.88 read from T0506.t04.many.frag # found chain 1uebA in training set T0506 161 :NASNITPAD 1uebA 89 :EQFAVPRSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35352 # 2a6aA.161.145 read from T0506.t04.many.frag # found chain 2a6aA in template set T0506 161 :NASNITPAD 2a6aA 134 :EPSVVSDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35353 # 1io0A.161.44 read from T0506.t04.many.frag # found chain 1io0A in training set Warning: unaligning (T0506)S163 (1io0A)M206 because G (3-10) conformation "forbidden" or filtered. T0506 161 :NA 1io0A 204 :NI T0506 164 :NITPAD 1io0A 207 :NIPVPT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35355 # 1dj7A.161.99 read from T0506.t04.many.frag # found chain 1dj7A in template set Warning: unaligning (T0506)N164 (1dj7A)D103 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :NAS 1dj7A 100 :DAQ T0506 165 :ITPAD 1dj7A 104 :IPMET Number of specific fragments extracted= 2 number of extra gaps= 1 total=35357 # 1zvtA.161.208 read from T0506.t04.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)N164 (1zvtA)K708 because E (beta_S) conformation "forbidden" or filtered. T0506 161 :NAS 1zvtA 705 :RKI T0506 165 :ITPAD 1zvtA 709 :LRPEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35359 # 2af4C.161.173 read from T0506.t04.many.frag # found chain 2af4C in template set T0506 161 :NASNITPAD 2af4C 174 :MVEMPSVED Number of specific fragments extracted= 1 number of extra gaps= 0 total=35360 # 2bvcA.161.411 read from T0506.t04.many.frag # found chain 2bvcA in template set T0506 161 :NASNITPAD 2bvcA 404 :DLYELPPEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35361 2cwkA expands to /projects/compbio/data/pdb/2cwk.pdb.gz 2cwkA:# 2cwkA.161.41 read from T0506.t04.many.frag # adding 2cwkA to template set # found chain 2cwkA in template set Warning: unaligning (T0506)N161 (2cwkA)K42 because Y (epsilon') conformation "forbidden" or filtered. T0506 162 :ASNITPAD 2cwkA 43 :MIWIDREL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35362 # 1fr2A.161.5 read from T0506.t04.many.frag # found chain 1fr2A in training set Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1fr2A)T11 Warning: unaligning (T0506)T166 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1fr2A)T11 T0506 161 :NASN 1fr2A 6 :SISD T0506 167 :PAD 1fr2A 12 :EAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35364 # 1vzyA.161.272 read from T0506.t04.many.frag # found chain 1vzyA in template set T0506 161 :NASNITPAD 1vzyA 273 :EKYLFTKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35365 # 2ahrA.161.148 read from T0506.t04.many.frag # found chain 2ahrA in template set Warning: unaligning (T0506)N161 (2ahrA)S146 because E (beta_S) conformation "forbidden" or filtered. T0506 162 :ASNITPAD 2ahrA 147 :TFDISEKD Number of specific fragments extracted= 1 number of extra gaps= 1 total=35366 # 1xszA.161.325 read from T0506.t04.many.frag # found chain 1xszA in training set Warning: unaligning (T0506)N161 (1xszA)A324 because P (beta_P) conformation "forbidden" or filtered. T0506 162 :ASNITPAD 1xszA 325 :TYDYEVGD Number of specific fragments extracted= 1 number of extra gaps= 1 total=35367 # 1sa3A.161.126 read from T0506.t04.many.frag # found chain 1sa3A in template set T0506 161 :NASNITPAD 1sa3A 127 :SIAEYDVET Number of specific fragments extracted= 1 number of extra gaps= 0 total=35368 # 2c1lA.161.340 read from T0506.t04.many.frag # found chain 2c1lA in template set Warning: unaligning (T0506)S163 (2c1lA)G343 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :NA 2c1lA 341 :RF T0506 164 :NITPAD 2c1lA 344 :YISNEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35370 # 1r6xA.161.350 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 161 :NASNITPAD 1r6xA 352 :RTLNISGTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35371 # 1l1dA.161.129 read from T0506.t04.many.frag # found chain 1l1dA in template set T0506 161 :NASNITPAD 1l1dA 500 :SLKFIPLEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35372 # 1ik9A.161.42 read from T0506.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0506)A162 (1ik9A)T44 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S163 (1ik9A)G45 because Y (epsilon') conformation "forbidden" or filtered. T0506 161 :N 1ik9A 43 :W T0506 164 :NITPAD 1ik9A 46 :TVSESE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35374 # 1qauA.161.57 read from T0506.t04.many.frag # found chain 1qauA in training set T0506 161 :NASNITPAD 1qauA 71 :PLVDLSYDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35375 # 1um0A.161.160 read from T0506.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0506)A162 (1um0A)A162 because P (beta_P) conformation "forbidden" or filtered. T0506 161 :N 1um0A 161 :K T0506 163 :SNITPAD 1um0A 163 :KNYDFNH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35377 # 1wpbA.161.156 read from T0506.t04.many.frag # found chain 1wpbA in template set Warning: unaligning (T0506)N161 because of BadResidue code BAD_PEPTIDE at template residue (1wpbA)R155 T0506 162 :ASNITPAD 1wpbA 156 :QYHLSANE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35378 # 1xhnA.162.169 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 162 :ASNITPADL 1xhnA 170 :PKIVTPEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35379 # 1vrbA.162.91 read from T0506.t04.many.frag # found chain 1vrbA in template set Warning: unaligning (T0506)A162 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vrbA)R80 Warning: unaligning (T0506)N164 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vrbA)V83 Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vrbA)V83 T0506 163 :S 1vrbA 81 :F T0506 166 :TPADL 1vrbA 84 :SPAEA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35381 # 1yt8A.162.375 read from T0506.t04.many.frag # found chain 1yt8A in template set T0506 162 :ASNITPADL 1yt8A 376 :ADTIDPTTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35382 # 1i4wA.162.314 read from T0506.t04.many.frag # found chain 1i4wA in template set T0506 162 :ASNITPADL 1i4wA 303 :PIDLTNDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35383 # 1tif.162.25 read from T0506.t04.many.frag # found chain 1tif in training set T0506 162 :ASNITPADL 1tif 26 :LGIKSKQEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35384 # 2cwkA.162.42 read from T0506.t04.many.frag # found chain 2cwkA in template set T0506 162 :ASNITPADL 2cwkA 43 :MIWIDRELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35385 # 1zvtA.162.209 read from T0506.t04.many.frag # found chain 1zvtA in template set T0506 162 :ASNITPADL 1zvtA 706 :KIKLRPEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35386 # 1dj7A.162.100 read from T0506.t04.many.frag # found chain 1dj7A in template set Warning: unaligning (T0506)A162 (1dj7A)A101 because P (beta_P) conformation "forbidden" or filtered. T0506 163 :SNITPADL 1dj7A 102 :QDIPMETL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35387 # 1xszA.162.326 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 162 :ASNITPADL 1xszA 325 :TYDYEVGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35388 # 1sg6A.162.378 read from T0506.t04.many.frag # found chain 1sg6A in training set T0506 162 :ASNITPADL 1sg6A 379 :ASVVANEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35389 # 1vjrA.162.240 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 162 :ASNITPADL 1vjrA 229 :TGETTPEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35390 # 2ahrA.162.149 read from T0506.t04.many.frag # found chain 2ahrA in template set T0506 162 :ASNITPADL 2ahrA 147 :TFDISEKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35391 # 2c8mA.162.164 read from T0506.t04.many.frag # found chain 2c8mA in template set T0506 162 :ASNITPADL 2c8mA 165 :LVHTDLDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=35392 # 2b06A.162.107 read from T0506.t04.many.frag # found chain 2b06A in template set T0506 162 :ASNITPADL 2b06A 108 :VSWVQKDQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35393 # 2c1vA.162.127 read from T0506.t04.many.frag # found chain 2c1vA in template set T0506 162 :ASNITPADL 2c1vA 128 :EMSNTPDQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35394 # 1uebA.162.89 read from T0506.t04.many.frag # found chain 1uebA in training set T0506 162 :ASNITPADL 1uebA 90 :QFAVPRSRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35395 # 2af4C.162.174 read from T0506.t04.many.frag # found chain 2af4C in template set T0506 162 :ASNITPADL 2af4C 175 :VEMPSVEDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35396 # 2bycA.162.94 read from T0506.t04.many.frag # found chain 2bycA in template set T0506 162 :ASNITPADL 2bycA 94 :MRIVSRKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35397 # 1acc.162.603 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)A162 (1acc)A604 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1acc)G606 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :S 1acc 605 :V T0506 165 :ITPADL 1acc 607 :ADESVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=35399 # 1ydxA.162.146 read from T0506.t04.many.frag # found chain 1ydxA in template set T0506 162 :ASNITPADL 1ydxA 124 :IQNIRISDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35400 # 1iuqA.162.306 read from T0506.t04.many.frag # found chain 1iuqA in training set Warning: unaligning (T0506)N164 (1iuqA)E310 because P (beta_P) conformation "forbidden" or filtered. T0506 162 :AS 1iuqA 308 :AP T0506 165 :ITPADL 1iuqA 311 :ISFEEI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35402 # 1l1dA.162.130 read from T0506.t04.many.frag # found chain 1l1dA in template set T0506 162 :ASNITPADL 1l1dA 501 :LKFIPLEQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35403 # 1r6xA.162.351 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)N164 (1r6xA)N355 because E (beta_S) conformation "forbidden" or filtered. T0506 162 :AS 1r6xA 353 :TL T0506 165 :ITPADL 1r6xA 356 :ISGTEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35405 # 1sa3A.162.127 read from T0506.t04.many.frag # found chain 1sa3A in template set Warning: unaligning (T0506)S163 (1sa3A)A129 because Y (epsilon') conformation "forbidden" or filtered. T0506 162 :A 1sa3A 128 :I T0506 164 :NITPADL 1sa3A 130 :EYDVETI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35407 # 1kgdA.162.53 read from T0506.t04.many.frag # found chain 1kgdA in training set Warning: unaligning (T0506)N164 (1kgdA)F785 because P (beta_P) conformation "forbidden" or filtered. T0506 162 :AS 1kgdA 783 :YY T0506 165 :ITPADL 1kgdA 786 :VSHDQM Number of specific fragments extracted= 2 number of extra gaps= 1 total=35409 # 1jeyA.162.325 read from T0506.t04.many.frag # found chain 1jeyA in template set T0506 162 :ASNITPADL 1jeyA 326 :QIILEKEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=35410 1n2zA expands to /projects/compbio/data/pdb/1n2z.pdb.gz 1n2zA:# 1n2zA.162.174 read from T0506.t04.many.frag # adding 1n2zA to template set # found chain 1n2zA in template set Warning: unaligning (T0506)N164 (1n2zA)Q198 because P (beta_P) conformation "forbidden" or filtered. T0506 162 :AS 1n2zA 196 :WP T0506 165 :ITPADL 1n2zA 199 :VSREQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35412 1syxB expands to /projects/compbio/data/pdb/1syx.pdb.gz 1syxB:# 1syxB.162.40 read from T0506.t04.many.frag # adding 1syxB to template set # found chain 1syxB in template set T0506 162 :ASNITPADL 1syxB 41 :YGPFTSAQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35413 # 1gvfA.162.209 read from T0506.t04.many.frag # found chain 1gvfA in training set T0506 162 :ASNITPADL 1gvfA 210 :ASDVPDEFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35414 # 1b43A.162.241 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 162 :ASNITPADL 1b43A 241 :IKGIGLKKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35415 # 1xhnA.163.170 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 163 :SNITPADLR 1xhnA 171 :KIVTPEEYY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35416 # 2bycA.163.95 read from T0506.t04.many.frag # found chain 2bycA in template set T0506 163 :SNITPADLR 2bycA 95 :RIVSRKELR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35417 # 1iuqA.163.307 read from T0506.t04.many.frag # found chain 1iuqA in training set T0506 163 :SNITPADLR 1iuqA 309 :PEISFEEIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35418 # 1zvtA.163.210 read from T0506.t04.many.frag # found chain 1zvtA in template set T0506 163 :SNITPADLR 1zvtA 707 :IKLRPEELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35419 # 2ahrA.163.150 read from T0506.t04.many.frag # found chain 2ahrA in template set T0506 163 :SNITPADLR 2ahrA 148 :FDISEKDFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35420 # 1tif.163.26 read from T0506.t04.many.frag # found chain 1tif in training set Warning: unaligning (T0506)S163 (1tif)G27 because S (epsilon) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1tif 28 :IKSKQEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35421 # 1vjrA.163.241 read from T0506.t04.many.frag # found chain 1vjrA in template set Warning: unaligning (T0506)S163 (1vjrA)G230 because Y (epsilon') conformation "forbidden" or filtered. T0506 164 :NITPADLR 1vjrA 231 :ETTPEDLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35422 # 1vrbA.163.92 read from T0506.t04.many.frag # found chain 1vrbA in template set Warning: unaligning (T0506)N164 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vrbA)V83 Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vrbA)V83 T0506 163 :S 1vrbA 81 :F T0506 166 :TPADLR 1vrbA 84 :SPAEAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35424 # 2c8mA.163.165 read from T0506.t04.many.frag # found chain 2c8mA in template set T0506 163 :SNITPADLR 2c8mA 166 :VHTDLDMLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35425 # 2c1vA.163.128 read from T0506.t04.many.frag # found chain 2c1vA in template set Warning: unaligning (T0506)I165 (2c1vA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :SN 2c1vA 129 :MS T0506 166 :TPADLR 2c1vA 132 :TPDQVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35427 # 1syxB.163.41 read from T0506.t04.many.frag # found chain 1syxB in template set Warning: unaligning (T0506)S163 (1syxB)G42 because P (beta_P) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1syxB 43 :PFTSAQMQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=35428 # 1xszA.163.327 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 163 :SNITPADLR 1xszA 326 :YDYEVGDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35429 # 1ydxA.163.147 read from T0506.t04.many.frag # found chain 1ydxA in template set T0506 163 :SNITPADLR 1ydxA 125 :QNIRISDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35430 # 1l1dA.163.131 read from T0506.t04.many.frag # found chain 1l1dA in template set Warning: unaligning (T0506)N164 (1l1dA)F503 because P (beta_P) conformation "forbidden" or filtered. T0506 163 :S 1l1dA 502 :K T0506 165 :ITPADLR 1l1dA 504 :IPLEQMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35432 # 1dj7A.163.101 read from T0506.t04.many.frag # found chain 1dj7A in template set T0506 163 :SNITPADLR 1dj7A 102 :QDIPMETLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35433 # 1y1oA.163.167 read from T0506.t04.many.frag # found chain 1y1oA in template set T0506 163 :SNITPADLR 1y1oA 165 :KSIPKQEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35434 # 2af4C.163.175 read from T0506.t04.many.frag # found chain 2af4C in template set T0506 163 :SNITPADLR 2af4C 176 :EMPSVEDVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35435 # 1sa3A.163.128 read from T0506.t04.many.frag # found chain 1sa3A in template set T0506 163 :SNITPADLR 1sa3A 129 :AEYDVETIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=35436 # 1jeyA.163.326 read from T0506.t04.many.frag # found chain 1jeyA in template set T0506 163 :SNITPADLR 1jeyA 327 :IILEKEETE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35437 # 1sg6A.163.379 read from T0506.t04.many.frag # found chain 1sg6A in training set T0506 163 :SNITPADLR 1sg6A 380 :SVVANEDIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35438 # 1b43A.163.242 read from T0506.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)S163 (1b43A)K242 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)N164 (1b43A)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 165 :ITPADLR 1b43A 244 :IGLKKAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35439 # 2cwkA.163.43 read from T0506.t04.many.frag # found chain 2cwkA in template set T0506 163 :SNITPADLR 2cwkA 44 :IWIDRELAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35440 # 1sz2A.163.221 read from T0506.t04.many.frag # found chain 1sz2A in template set Warning: unaligning (T0506)S163 (1sz2A)E211 because P (beta_P) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1sz2A 212 :NLKPKDIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=35441 2amdA expands to /projects/compbio/data/pdb/2amd.pdb.gz 2amdA:# 2amdA.163.227 read from T0506.t04.many.frag # adding 2amdA to template set # found chain 2amdA in template set Warning: unaligning (T0506)I165 (2amdA)T225 because Y (epsilon') conformation "forbidden" or filtered. T0506 163 :SN 2amdA 223 :FT T0506 166 :TPADLR 2amdA 226 :TLNDFN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35443 # 1yt8A.163.376 read from T0506.t04.many.frag # found chain 1yt8A in template set T0506 163 :SNITPADLR 1yt8A 377 :DTIDPTTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35444 # 1n2zA.163.175 read from T0506.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0506)S163 (1n2zA)P197 because P (beta_P) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1n2zA 198 :QVSREQVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35445 1cpo expands to /projects/compbio/data/pdb/1cpo.pdb.gz 1cpo:Warning: there is no chain 1cpo will retry with 1cpoA Bad short name: OE for alphabet: pdb_atoms # 1cpo.163.46 read from T0506.t04.many.frag # adding 1cpo to template set # found chain 1cpo in template set T0506 163 :SNITPADLR 1cpo 46 :RAISRETLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35446 # 1um0A.163.162 read from T0506.t04.many.frag # found chain 1um0A in template set Warning: unaligning (T0506)N164 (1um0A)N164 because E (beta_S) conformation "forbidden" or filtered. T0506 163 :S 1um0A 163 :K T0506 165 :ITPADLR 1um0A 165 :YDFNHAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35448 # 1oi2A.163.295 read from T0506.t04.many.frag # found chain 1oi2A in training set Warning: unaligning (T0506)S163 (1oi2A)G298 because T (delta_L) conformation "forbidden" or filtered. T0506 164 :NITPADLR 1oi2A 299 :ATPLSELY Number of specific fragments extracted= 1 number of extra gaps= 1 total=35449 # 1i2aA.163.77 read from T0506.t04.many.frag # found chain 1i2aA in template set T0506 163 :SNITPADLR 1i2aA 78 :TVIRKEEIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35450 # 1wnaA.164.92 read from T0506.t04.many.frag # found chain 1wnaA in training set Warning: unaligning (T0506)N164 (1wnaA)V93 because E (beta_S) conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1wnaA 94 :VSPGEMTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35451 # 1xhnA.164.171 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 164 :NITPADLRT 1xhnA 172 :IVTPEEYYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35452 # 1iuqA.164.308 read from T0506.t04.many.frag # found chain 1iuqA in training set T0506 164 :NITPADLRT 1iuqA 310 :EISFEEIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35453 # 1w8sA.164.94 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 164 :NITPADLRT 1w8sA 95 :NCSVEEAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35454 # 1zvtA.164.211 read from T0506.t04.many.frag # found chain 1zvtA in template set T0506 164 :NITPADLRT 1zvtA 708 :KLRPEELQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35455 # 1lm5A.164.59 read from T0506.t04.many.frag # found chain 1lm5A in training set T0506 164 :NITPADLRT 1lm5A 2668 :KLSLQDAVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35456 # 1xszA.164.328 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 164 :NITPADLRT 1xszA 327 :DYEVGDLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35457 # 1vjrA.164.242 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 164 :NITPADLRT 1vjrA 231 :ETTPEDLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35458 # 1yc5A.164.129 read from T0506.t04.many.frag # found chain 1yc5A in template set T0506 164 :NITPADLRT 1yc5A 130 :KYTVEDVIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35459 # 1vrbA.164.93 read from T0506.t04.many.frag # found chain 1vrbA in template set Warning: unaligning (T0506)N164 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vrbA)V83 Warning: unaligning (T0506)I165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vrbA)V83 T0506 166 :TPADLRT 1vrbA 84 :SPAEALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35460 # 1ydxA.164.148 read from T0506.t04.many.frag # found chain 1ydxA in template set T0506 164 :NITPADLRT 1ydxA 126 :NIRISDLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35461 # 2ahrA.164.151 read from T0506.t04.many.frag # found chain 2ahrA in template set T0506 164 :NITPADLRT 2ahrA 149 :DISEKDFDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35462 # 1xqoA.164.15 read from T0506.t04.many.frag # found chain 1xqoA in training set T0506 164 :NITPADLRT 1xqoA 16 :RLGIEEVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35463 # 2amdA.164.228 read from T0506.t04.many.frag # found chain 2amdA in template set Warning: unaligning (T0506)N164 (2amdA)T224 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I165 (2amdA)T225 because Y (epsilon') conformation "forbidden" or filtered. T0506 166 :TPADLRT 2amdA 226 :TLNDFNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35464 # 2bycA.164.96 read from T0506.t04.many.frag # found chain 2bycA in template set T0506 164 :NITPADLRT 2bycA 96 :IVSRKELRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35465 # 1xl3C.164.19 read from T0506.t04.many.frag # found chain 1xl3C in template set Warning: unaligning (T0506)N164 (1xl3C)W20 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T166 (1xl3C)G22 because Y (epsilon') conformation "forbidden" or filtered. T0506 165 :I 1xl3C 21 :A T0506 167 :PADLRT 1xl3C 23 :IHDIEH Number of specific fragments extracted= 2 number of extra gaps= 2 total=35467 # 2c8mA.164.166 read from T0506.t04.many.frag # found chain 2c8mA in template set T0506 164 :NITPADLRT 2c8mA 167 :HTDLDMLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35468 # 1b43A.164.243 read from T0506.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)N164 (1b43A)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 165 :ITPADLRT 1b43A 244 :IGLKKALE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35469 # 2c1vA.164.129 read from T0506.t04.many.frag # found chain 2c1vA in template set Warning: unaligning (T0506)I165 (2c1vA)N131 because Y (epsilon') conformation "forbidden" or filtered. T0506 164 :N 2c1vA 130 :S T0506 166 :TPADLRT 2c1vA 132 :TPDQVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35471 # 1sa3A.164.129 read from T0506.t04.many.frag # found chain 1sa3A in template set T0506 164 :NITPADLRT 1sa3A 130 :EYDVETICT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35472 # 1jeyA.164.327 read from T0506.t04.many.frag # found chain 1jeyA in template set T0506 164 :NITPADLRT 1jeyA 328 :ILEKEETEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35473 # 1uwkA.164.277 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 164 :NITPADLRT 1uwkA 278 :GWTWEQYRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35474 # 1sz2A.164.222 read from T0506.t04.many.frag # found chain 1sz2A in template set T0506 164 :NITPADLRT 1sz2A 212 :NLKPKDITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35475 1gxqA expands to /projects/compbio/data/pdb/1gxq.pdb.gz 1gxqA:# 1gxqA.164.49 read from T0506.t04.many.frag # adding 1gxqA to template set # found chain 1gxqA in template set T0506 164 :NITPADLRT 1gxqA 173 :VYSREQLLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35476 # 1n2zA.164.176 read from T0506.t04.many.frag # found chain 1n2zA in template set T0506 164 :NITPADLRT 1n2zA 198 :QVSREQVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35477 # 1syxB.164.42 read from T0506.t04.many.frag # found chain 1syxB in template set T0506 164 :NITPADLRT 1syxB 43 :PFTSAQMQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35478 # 1zx5A.164.135 read from T0506.t04.many.frag # found chain 1zx5A in template set T0506 164 :NITPADLRT 1zx5A 135 :DVKIEELEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35479 1zx4A expands to /projects/compbio/data/pdb/1zx4.pdb.gz 1zx4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1zx4A.164.62 read from T0506.t04.many.frag # adding 1zx4A to template set # found chain 1zx4A in template set T0506 164 :NITPADLRT 1zx4A 204 :ELTFSDYKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35480 # 1tif.164.27 read from T0506.t04.many.frag # found chain 1tif in training set T0506 164 :NITPADLRT 1tif 28 :IKSKQEALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35481 # 1iirA.164.352 read from T0506.t04.many.frag # found chain 1iirA in training set T0506 164 :NITPADLRT 1iirA 353 :IPTFDSLSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35482 # 1wnaA.165.93 read from T0506.t04.many.frag # found chain 1wnaA in training set T0506 165 :ITPADLRTD 1wnaA 94 :VSPGEMTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35483 # 1zvtA.165.212 read from T0506.t04.many.frag # found chain 1zvtA in template set T0506 165 :ITPADLRTD 1zvtA 709 :LRPEELQKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35484 # 1xhnA.165.172 read from T0506.t04.many.frag # found chain 1xhnA in template set T0506 165 :ITPADLRTD 1xhnA 173 :VTPEEYYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35485 # 1h6kA.165.492 read from T0506.t04.many.frag # found chain 1h6kA in template set T0506 165 :ITPADLRTD 1h6kA 512 :ATNDEIFSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35486 # 1yc5A.165.130 read from T0506.t04.many.frag # found chain 1yc5A in template set T0506 165 :ITPADLRTD 1yc5A 131 :YTVEDVIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35487 # 2c8mA.165.167 read from T0506.t04.many.frag # found chain 2c8mA in template set T0506 165 :ITPADLRTD 2c8mA 168 :TDLDMLSAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35488 # 1xszA.165.329 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 165 :ITPADLRTD 1xszA 328 :YEVGDLIKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35489 # 1vjrA.165.243 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 165 :ITPADLRTD 1vjrA 232 :TTPEDLERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35490 # 1odzA.165.224 read from T0506.t04.many.frag # found chain 1odzA in training set T0506 165 :ITPADLRTD 1odzA 262 :VTEANYLER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35491 # 1gxqA.165.50 read from T0506.t04.many.frag # found chain 1gxqA in template set T0506 165 :ITPADLRTD 1gxqA 174 :YSREQLLNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35492 # 1lm5A.165.60 read from T0506.t04.many.frag # found chain 1lm5A in training set T0506 165 :ITPADLRTD 1lm5A 2669 :LSLQDAVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35493 # 2c1vA.165.130 read from T0506.t04.many.frag # found chain 2c1vA in template set T0506 165 :ITPADLRTD 2c1vA 131 :NTPDQVVKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35494 # 1zx5A.165.136 read from T0506.t04.many.frag # found chain 1zx5A in template set T0506 165 :ITPADLRTD 1zx5A 136 :VKIEELEEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35495 # 1onrA.165.274 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 165 :ITPADLRTD 1onrA 276 :ITESEFLWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35496 # 2bycA.165.97 read from T0506.t04.many.frag # found chain 2bycA in template set T0506 165 :ITPADLRTD 2bycA 97 :VSRKELRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35497 # 1w8sA.165.95 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 165 :ITPADLRTD 1w8sA 96 :CSVEEAVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35498 # 1zbsA.165.176 read from T0506.t04.many.frag # found chain 1zbsA in template set T0506 165 :ITPADLRTD 1zbsA 177 :LTSADIIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=35499 # 1ydxA.165.149 read from T0506.t04.many.frag # found chain 1ydxA in template set T0506 165 :ITPADLRTD 1ydxA 127 :IRISDLKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35500 # 1vhtA.165.133 read from T0506.t04.many.frag # found chain 1vhtA in training set T0506 165 :ITPADLRTD 1vhtA 132 :VSPETQLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35501 # 1on2A.165.22 read from T0506.t04.many.frag # found chain 1on2A in training set T0506 165 :ITPADLRTD 1on2A 23 :ARVSDIAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35502 # 1xsvA.165.41 read from T0506.t04.many.frag # found chain 1xsvA in training set T0506 165 :ITPADLRTD 1xsvA 39 :YSLSEIADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35503 # 1n2zA.165.177 read from T0506.t04.many.frag # found chain 1n2zA in template set T0506 165 :ITPADLRTD 1n2zA 199 :VSREQVLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35504 # 1iuqA.165.309 read from T0506.t04.many.frag # found chain 1iuqA in training set T0506 165 :ITPADLRTD 1iuqA 311 :ISFEEIAAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35505 # 1sa3A.165.130 read from T0506.t04.many.frag # found chain 1sa3A in template set T0506 165 :ITPADLRTD 1sa3A 131 :YDVETICTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35506 # 2ahrA.165.152 read from T0506.t04.many.frag # found chain 2ahrA in template set T0506 165 :ITPADLRTD 2ahrA 150 :ISEKDFDTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35507 1u7kA expands to /projects/compbio/data/pdb/1u7k.pdb.gz 1u7kA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1u7kA.165.14 read from T0506.t04.many.frag # adding 1u7kA to template set # found chain 1u7kA in template set T0506 165 :ITPADLRTD 1u7kA 15 :FSSSDLYNW Number of specific fragments extracted= 1 number of extra gaps= 0 total=35508 # 1b43A.165.244 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 165 :ITPADLRTD 1b43A 244 :IGLKKALEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35509 # 1xqoA.165.16 read from T0506.t04.many.frag # found chain 1xqoA in training set T0506 165 :ITPADLRTD 1xqoA 17 :LGIEEVLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35510 # 1l3lA.165.188 read from T0506.t04.many.frag # found chain 1l3lA in training set T0506 165 :ITPADLRTD 1l3lA 189 :KTMEEIADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35511 # 1v33A.165.236 read from T0506.t04.many.frag # found chain 1v33A in training set T0506 165 :ITPADLRTD 1v33A 217 :IKLPHLINA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35512 # 1h6kA.166.493 read from T0506.t04.many.frag # found chain 1h6kA in template set T0506 166 :TPADLRTDL 1h6kA 513 :TNDEIFSIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35513 # 1gxqA.166.51 read from T0506.t04.many.frag # found chain 1gxqA in template set T0506 166 :TPADLRTDL 1gxqA 175 :SREQLLNHV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35514 # 1odzA.166.225 read from T0506.t04.many.frag # found chain 1odzA in training set T0506 166 :TPADLRTDL 1odzA 263 :TEANYLERY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35515 # 1wnaA.166.94 read from T0506.t04.many.frag # found chain 1wnaA in training set T0506 166 :TPADLRTDL 1wnaA 95 :SPGEMTALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35516 # 1zvtA.166.213 read from T0506.t04.many.frag # found chain 1zvtA in template set T0506 166 :TPADLRTDL 1zvtA 710 :RPEELQKVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35517 # 1onrA.166.275 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 166 :TPADLRTDL 1onrA 277 :TESEFLWQH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35518 # 1xhnA.166.173 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 166 :TPADLRTD 1xhnA 174 :TPEEYYNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35519 # 1zx5A.166.137 read from T0506.t04.many.frag # found chain 1zx5A in template set T0506 166 :TPADLRTDL 1zx5A 137 :KIEELEEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35520 # 1zbsA.166.177 read from T0506.t04.many.frag # found chain 1zbsA in template set T0506 166 :TPADLRTDL 1zbsA 178 :TSADIIESV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35521 # 1xszA.166.330 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 166 :TPADLRTDL 1xszA 329 :EVGDLIKAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35522 # 1yc5A.166.131 read from T0506.t04.many.frag # found chain 1yc5A in template set T0506 166 :TPADLRTDL 1yc5A 132 :TVEDVIKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35523 # 1lm5A.166.61 read from T0506.t04.many.frag # found chain 1lm5A in training set T0506 166 :TPADLRTDL 1lm5A 2670 :SLQDAVSQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35524 # 2bycA.166.98 read from T0506.t04.many.frag # found chain 2bycA in template set T0506 166 :TPADLRTDL 2bycA 98 :SRKELRALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35525 1ydiA expands to /projects/compbio/data/pdb/1ydi.pdb.gz 1ydiA:Skipped atom 56, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 58, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 60, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 62, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 643, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 645, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 806, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 808, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 810, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 812, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 814, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 816, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1107, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1109, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1111, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1113, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1115, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1538, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1540, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1544, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1564, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1566, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1568, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1570, because occupancy 0.500 <= existing 0.500 in 1ydiA Skipped atom 1572, because occupancy 0.500 <= existing 0.500 in 1ydiA # 1ydiA.166.157 read from T0506.t04.many.frag # adding 1ydiA to template set # found chain 1ydiA in template set T0506 166 :TPADLRTDL 1ydiA 153 :TMEDLVTYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35526 # 1r6xA.166.355 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 166 :TPADLRTDL 1r6xA 357 :SGTELRRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35527 # 1v33A.166.237 read from T0506.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0506)L174 (1v33A)G226 because T (delta_L) conformation "forbidden" or filtered. T0506 166 :TPADLRTD 1v33A 218 :KLPHLINA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35528 # 1orjA.166.98 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 166 :TPADLRTDL 1orjA 1099 :TKEELQKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35529 # 1vjrA.166.244 read from T0506.t04.many.frag # found chain 1vjrA in template set T0506 166 :TPADLRTDL 1vjrA 233 :TPEDLERAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35530 # 1jhgA.166.59 read from T0506.t04.many.frag # found chain 1jhgA in training set T0506 166 :TPADLRTDL 1jhgA 67 :SQRELKNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35531 # 1b43A.166.245 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 166 :TPADLRTDL 1b43A 245 :GLKKALEIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35532 # 1l3lA.166.189 read from T0506.t04.many.frag # found chain 1l3lA in training set T0506 166 :TPADLRTDL 1l3lA 190 :TMEEIADVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35533 # 1on2A.166.23 read from T0506.t04.many.frag # found chain 1on2A in training set T0506 166 :TPADLRTDL 1on2A 24 :RVSDIAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35534 # 2c1vA.166.131 read from T0506.t04.many.frag # found chain 2c1vA in template set T0506 166 :TPADLRTDL 2c1vA 132 :TPDQVVKTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35535 # 2c8mA.166.168 read from T0506.t04.many.frag # found chain 2c8mA in template set T0506 166 :TPADLRTDL 2c8mA 169 :DLDMLSAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35536 2d3dA expands to /projects/compbio/data/pdb/2d3d.pdb.gz 2d3dA:Skipped atom 205, because occupancy 0.250 <= existing 0.250 in 2d3dA Skipped atom 209, because occupancy 0.250 <= existing 0.250 in 2d3dA Skipped atom 211, because occupancy 0.250 <= existing 0.250 in 2d3dA Skipped atom 213, because occupancy 0.250 <= existing 0.250 in 2d3dA Skipped atom 215, because occupancy 0.250 <= existing 0.250 in 2d3dA Skipped atom 217, because occupancy 0.250 <= existing 0.250 in 2d3dA Skipped atom 219, because occupancy 0.250 <= existing 0.250 in 2d3dA # 2d3dA.166.48 read from T0506.t04.many.frag # adding 2d3dA to template set # found chain 2d3dA in template set Warning: unaligning (T0506)L174 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0506 166 :TPADLRTD 2d3dA 484 :DDETLEKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35537 # 1vhtA.166.134 read from T0506.t04.many.frag # found chain 1vhtA in training set T0506 166 :TPADLRTDL 1vhtA 133 :SPETQLKRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35538 # 1n2zA.166.178 read from T0506.t04.many.frag # found chain 1n2zA in template set Warning: unaligning (T0506)L174 (1n2zA)S208 because L (left) conformation "forbidden" or filtered. T0506 166 :TPADLRTD 1n2zA 200 :SREQVLAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35539 # 1i2tA.166.31 read from T0506.t04.many.frag # found chain 1i2tA in training set T0506 166 :TPADLRTDL 1i2tA 1040 :SPAQLLLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35540 1t3wA expands to /projects/compbio/data/pdb/1t3w.pdb.gz 1t3wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1t3wA.166.65 read from T0506.t04.many.frag # adding 1t3wA to template set # found chain 1t3wA in template set T0506 166 :TPADLRTDL 1t3wA 499 :TTGQLLEHY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35541 # 1c75A.166.34 read from T0506.t04.many.frag # found chain 1c75A in training set T0506 166 :TPADLRTDL 1c75A 56 :SEEEILDII Number of specific fragments extracted= 1 number of extra gaps= 0 total=35542 # 1h6kA.167.494 read from T0506.t04.many.frag # found chain 1h6kA in template set T0506 167 :PADLRTDLS 1h6kA 514 :NDEIFSILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35543 # 1gxqA.167.52 read from T0506.t04.many.frag # found chain 1gxqA in template set T0506 167 :PADLRTDLS 1gxqA 176 :REQLLNHVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=35544 # 1odzA.167.226 read from T0506.t04.many.frag # found chain 1odzA in training set T0506 167 :PADLRTDLS 1odzA 264 :EANYLERYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35545 # 1zvtA.167.214 read from T0506.t04.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)S175 (1zvtA)G719 because Y (epsilon') conformation "forbidden" or filtered. T0506 167 :PADLRTDL 1zvtA 711 :PEELQKVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=35546 # 1zbsA.167.178 read from T0506.t04.many.frag # found chain 1zbsA in template set T0506 167 :PADLRTDLS 1zbsA 179 :SADIIESVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35547 # 1zx5A.167.138 read from T0506.t04.many.frag # found chain 1zx5A in template set T0506 167 :PADLRTDLS 1zx5A 138 :IEELEEKLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35548 # 1orjA.167.99 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 167 :PADLRTDLS 1orjA 1100 :KEELQKILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35549 # 1ydiA.167.158 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 167 :PADLRTDLS 1ydiA 154 :MEDLVTYTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35550 # 1b43A.167.246 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 167 :PADLRTDLS 1b43A 246 :LKKALEIVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35551 # 1wnaA.167.95 read from T0506.t04.many.frag # found chain 1wnaA in training set T0506 167 :PADLRTDLS 1wnaA 96 :PGEMTALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35552 # 1xhnA.167.174 read from T0506.t04.many.frag # found chain 1xhnA in template set Warning: unaligning (T0506)D173 (1xhnA)V181 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L174 because last residue in template chain is (1xhnA)T182 T0506 167 :PADLRT 1xhnA 175 :PEEYYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35553 # 1onrA.167.276 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 167 :PADLRTDLS 1onrA 278 :ESEFLWQHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35554 # 1xszA.167.331 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 167 :PADLRTDLS 1xszA 330 :VGDLIKAYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35555 2b0cA expands to /projects/compbio/data/pdb/2b0c.pdb.gz 2b0cA:# 2b0cA.167.37 read from T0506.t04.many.frag # adding 2b0cA to template set # found chain 2b0cA in template set T0506 167 :PADLRTDLS 2b0cA 38 :LASLKKSFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35556 # 2d3dA.167.49 read from T0506.t04.many.frag # found chain 2d3dA in template set T0506 167 :PADLRTDLS 2d3dA 485 :DETLEKKGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35557 1hlvA expands to /projects/compbio/data/pdb/1hlv.pdb.gz 1hlvA:# 1hlvA.167.38 read from T0506.t04.many.frag # adding 1hlvA to template set # found chain 1hlvA in template set T0506 167 :PADLRTDLS 1hlvA 39 :PSTLSTILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35558 # 2bycA.167.99 read from T0506.t04.many.frag # found chain 2bycA in template set T0506 167 :PADLRTDLS 2bycA 99 :RKELRALAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35559 # 1r6xA.167.356 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 167 :PADLRTDLS 1r6xA 358 :GTELRRRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35560 # 2c8mA.167.169 read from T0506.t04.many.frag # found chain 2c8mA in template set Warning: unaligning (T0506)S175 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c8mA)E194 T0506 167 :PADLRTDL 2c8mA 170 :LDMLSAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35561 # 1jhgA.167.60 read from T0506.t04.many.frag # found chain 1jhgA in training set Warning: unaligning (T0506)S175 (1jhgA)G76 because T (delta_L) conformation "forbidden" or filtered. T0506 167 :PADLRTDL 1jhgA 68 :QRELKNEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35562 # 1v33A.167.238 read from T0506.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0506)L174 (1v33A)G226 because T (delta_L) conformation "forbidden" or filtered. T0506 167 :PADLRTD 1v33A 219 :LPHLINA T0506 175 :S 1v33A 227 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=35564 # 1yt8A.167.380 read from T0506.t04.many.frag # found chain 1yt8A in template set T0506 167 :PADLRTDLS 1yt8A 381 :PTTLADWLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35565 # 1on2A.167.24 read from T0506.t04.many.frag # found chain 1on2A in training set Warning: unaligning (T0506)S175 (1on2A)A33 because L (left) conformation "forbidden" or filtered. T0506 167 :PADLRTDL 1on2A 25 :VSDIAEAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35566 # 1i2tA.167.32 read from T0506.t04.many.frag # found chain 1i2tA in training set T0506 167 :PADLRTDLS 1i2tA 1041 :PAQLLLLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35567 # 1yc5A.167.132 read from T0506.t04.many.frag # found chain 1yc5A in template set T0506 167 :PADLRTDLS 1yc5A 133 :VEDVIKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35568 # 1l3lA.167.190 read from T0506.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0506)S175 (1l3lA)G199 because L (left) conformation "forbidden" or filtered. T0506 167 :PADLRTDL 1l3lA 191 :MEEIADVE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35569 # 1c75A.167.35 read from T0506.t04.many.frag # found chain 1c75A in training set T0506 167 :PADLRTDLS 1c75A 57 :EEEILDIIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35570 # 2aeuA.167.255 read from T0506.t04.many.frag # found chain 2aeuA in template set T0506 167 :PADLRTDLS 2aeuA 256 :LERIRKAFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35571 # 1tjvA.167.411 read from T0506.t04.many.frag # found chain 1tjvA in template set T0506 167 :PADLRTDLS 1tjvA 412 :LEDLKSISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35572 # 1z3eB.167.39 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 167 :PADLRTDLS 1z3eB 282 :EEDMMKVRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35573 # 1gxqA.168.53 read from T0506.t04.many.frag # found chain 1gxqA in template set T0506 168 :ADLRTDLSG 1gxqA 177 :EQLLNHVWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35574 # 1h6kA.168.495 read from T0506.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0506)G176 (1h6kA)D523 because G (3-10) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1h6kA 515 :DEIFSILK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35575 # 1ydiA.168.159 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 168 :ADLRTDLSG 1ydiA 155 :EDLVTYTKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35576 # 2d3dA.168.50 read from T0506.t04.many.frag # found chain 2d3dA in template set T0506 168 :ADLRTDLSG 2d3dA 486 :ETLEKKGVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35577 # 2b0cA.168.38 read from T0506.t04.many.frag # found chain 2b0cA in template set T0506 168 :ADLRTDLSG 2b0cA 39 :ASLKKSFHM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35578 # 1zbsA.168.179 read from T0506.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0506)G176 (1zbsA)R188 because G (3-10) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1zbsA 180 :ADIIESVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=35579 # 1v33A.168.239 read from T0506.t04.many.frag # found chain 1v33A in training set Warning: unaligning (T0506)L174 (1v33A)G226 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1v33A)R228 because P (beta_P) conformation "forbidden" or filtered. T0506 168 :ADLRTD 1v33A 220 :PHLINA T0506 175 :S 1v33A 227 :I Number of specific fragments extracted= 2 number of extra gaps= 2 total=35581 # 1hlvA.168.39 read from T0506.t04.many.frag # found chain 1hlvA in template set T0506 168 :ADLRTDLSG 1hlvA 40 :STLSTILKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35582 # 1odzA.168.227 read from T0506.t04.many.frag # found chain 1odzA in training set T0506 168 :ADLRTDLSG 1odzA 265 :ANYLERYPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35583 # 1orjA.168.100 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 168 :ADLRTDLSG 1orjA 1101 :EELQKILEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35584 1b4fA expands to /projects/compbio/data/pdb/1b4f.pdb.gz 1b4fA:# 1b4fA.168.46 read from T0506.t04.many.frag # adding 1b4fA to template set # found chain 1b4fA in template set T0506 168 :ADLRTDLSG 1b4fA 47 :EDILRVGVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35585 # 1lm5A.168.63 read from T0506.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0506)G176 (1lm5A)I2680 because E (beta_S) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1lm5A 2672 :QDAVSQGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=35586 # 1zx5A.168.139 read from T0506.t04.many.frag # found chain 1zx5A in template set T0506 168 :ADLRTDLSG 1zx5A 139 :EELEEKLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35587 # 1zybA.168.124 read from T0506.t04.many.frag # found chain 1zybA in template set T0506 168 :ADLRTDLSG 1zybA 113 :AFVLSDLFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35588 # 1onrA.168.277 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 168 :ADLRTDLSG 1onrA 279 :SEFLWQHNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35589 # 1i2tA.168.33 read from T0506.t04.many.frag # found chain 1i2tA in training set Warning: unaligning (T0506)G176 (1i2tA)S1050 because D (zeta) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1i2tA 1042 :AQLLLLLA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35590 # 1b43A.168.247 read from T0506.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)G176 (1b43A)H255 because G (3-10) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1b43A 247 :KKALEIVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35591 # 1vdkA.168.395 read from T0506.t04.many.frag # found chain 1vdkA in training set T0506 168 :ADLRTDLSG 1vdkA 396 :ERIEEYLQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35592 # 1r6xA.168.357 read from T0506.t04.many.frag # found chain 1r6xA in training set Warning: unaligning (T0506)G176 (1r6xA)V367 because G (3-10) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1r6xA 359 :TELRRRLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35593 # 1jhgA.168.61 read from T0506.t04.many.frag # found chain 1jhgA in training set Warning: unaligning (T0506)G176 (1jhgA)A77 because P (beta_P) conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 1jhgA 69 :RELKNELG Number of specific fragments extracted= 1 number of extra gaps= 1 total=35594 # 1zvtA.168.215 read from T0506.t04.many.frag # found chain 1zvtA in template set Warning: unaligning (T0506)S175 (1zvtA)G719 because Y (epsilon') conformation "forbidden" or filtered. T0506 168 :ADLRTDL 1zvtA 712 :EELQKVT T0506 176 :G 1zvtA 720 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=35596 # 1z3eB.168.40 read from T0506.t04.many.frag # found chain 1z3eB in template set T0506 168 :ADLRTDLSG 1z3eB 283 :EDMMKVRNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35597 1kpsB expands to /projects/compbio/data/pdb/1kps.pdb.gz 1kpsB:# 1kpsB.168.27 read from T0506.t04.many.frag # adding 1kpsB to template set # found chain 1kpsB in template set T0506 168 :ADLRTDLSG 1kpsB 446 :EKLLRLGPK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35598 # 2bf5A.168.56 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)G176 (2bf5A)R69 because Y (epsilon') conformation "forbidden" or filtered. T0506 168 :ADLRTDLS 2bf5A 61 :KTLEEQLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=35599 # 1l3lA.168.191 read from T0506.t04.many.frag # found chain 1l3lA in training set T0506 168 :ADLRTDLSG 1l3lA 192 :EEIADVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35600 1d5yA expands to /projects/compbio/data/pdb/1d5y.pdb.gz 1d5yA:# 1d5yA.168.23 read from T0506.t04.many.frag # adding 1d5yA to template set # found chain 1d5yA in template set T0506 168 :ADLRTDLSG 1d5yA 26 :NVAAKAGYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35601 1ru3A expands to /projects/compbio/data/pdb/1ru3.pdb.gz 1ru3A:# 1ru3A.168.474 read from T0506.t04.many.frag # adding 1ru3A to template set # found chain 1ru3A in template set T0506 168 :ADLRTDLSG 1ru3A 475 :QKVLELREI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35602 # 1xszA.168.332 read from T0506.t04.many.frag # found chain 1xszA in training set T0506 168 :ADLRTDLSG 1xszA 331 :GDLIKAYDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35603 # 1ir6A.168.254 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 168 :ADLRTDLSG 1ir6A 294 :AEAQALVGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35604 # 2aeuA.168.256 read from T0506.t04.many.frag # found chain 2aeuA in template set T0506 168 :ADLRTDLSG 2aeuA 257 :ERIRKAFER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35605 # 1gxqA.169.54 read from T0506.t04.many.frag # found chain 1gxqA in template set T0506 169 :DLRTDLSGA 1gxqA 178 :QLLNHVWGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35606 # 1h6kA.169.496 read from T0506.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0506)G176 (1h6kA)D523 because G (3-10) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1h6kA 516 :EIFSILK T0506 177 :A 1h6kA 524 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=35608 # 1b43A.169.248 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 169 :DLRTDLSGA 1b43A 248 :KALEIVRHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35609 # 2b0cA.169.39 read from T0506.t04.many.frag # found chain 2b0cA in template set Warning: unaligning (T0506)G176 (2b0cA)M47 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (2b0cA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0506 169 :DLRTDLS 2b0cA 40 :SLKKSFH Number of specific fragments extracted= 1 number of extra gaps= 1 total=35610 # 1zybA.169.125 read from T0506.t04.many.frag # found chain 1zybA in template set T0506 169 :DLRTDLSGA 1zybA 114 :FVLSDLFRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35611 # 1vdkA.169.396 read from T0506.t04.many.frag # found chain 1vdkA in training set T0506 169 :DLRTDLSGA 1vdkA 397 :RIEEYLQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35612 # 1hlvA.169.40 read from T0506.t04.many.frag # found chain 1hlvA in template set Warning: unaligning (T0506)G176 (1hlvA)N48 because G (3-10) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1hlvA 41 :TLSTILK T0506 177 :A 1hlvA 49 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35614 # 2d3dA.169.51 read from T0506.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0506)L174 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. T0506 169 :DLRTD 2d3dA 487 :TLEKK T0506 175 :SGA 2d3dA 493 :VLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35616 # 1ydiA.169.160 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 169 :DLRTDLSGA 1ydiA 156 :DLVTYTKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35617 # 1zbsA.169.180 read from T0506.t04.many.frag # found chain 1zbsA in template set Warning: unaligning (T0506)S175 (1zbsA)Y187 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1zbsA)R188 because G (3-10) conformation "forbidden" or filtered. T0506 169 :DLRTDL 1zbsA 181 :DIIESV T0506 177 :A 1zbsA 189 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35619 # 1i2tA.169.34 read from T0506.t04.many.frag # found chain 1i2tA in training set Warning: unaligning (T0506)G176 (1i2tA)S1050 because D (zeta) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1i2tA 1043 :QLLLLLA T0506 177 :A 1i2tA 1051 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=35621 # 1orjA.169.101 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 169 :DLRTDLSGA 1orjA 1102 :ELQKILEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35622 # 1ir6A.169.255 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 169 :DLRTDLSGA 1ir6A 295 :EAQALVGEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35623 # 1r6xA.169.358 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 169 :DLRTDLSGA 1r6xA 360 :ELRRRLRVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35624 # 1jhgA.169.62 read from T0506.t04.many.frag # found chain 1jhgA in training set Warning: unaligning (T0506)S175 (1jhgA)G76 because T (delta_L) conformation "forbidden" or filtered. T0506 169 :DLRTDL 1jhgA 70 :ELKNEL T0506 176 :GA 1jhgA 77 :AG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35626 # 1onrA.169.278 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 169 :DLRTDLSGA 1onrA 280 :EFLWQHNQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35627 # 1b4fA.169.47 read from T0506.t04.many.frag # found chain 1b4fA in template set T0506 169 :DLRTDLSGA 1b4fA 48 :DILRVGVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35628 # 2a6hE.169.7 read from T0506.t04.many.frag # found chain 2a6hE in template set Warning: unaligning (T0506)G176 (2a6hE)S15 because E (beta_S) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 2a6hE 8 :KLFGMVD T0506 177 :A 2a6hE 16 :K Number of specific fragments extracted= 2 number of extra gaps= 1 total=35630 # 1nrzA.169.63 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 169 :DLRTDLSGA 1nrzA 65 :KAVAVYHNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35631 # 1zx5A.169.140 read from T0506.t04.many.frag # found chain 1zx5A in template set T0506 169 :DLRTDLSGA 1zx5A 140 :ELEEKLKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35632 # 1ru3A.169.475 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 169 :DLRTDLSGA 1ru3A 476 :KVLELREIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35633 # 2bf5A.169.57 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)S175 (2bf5A)G68 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (2bf5A)R69 because Y (epsilon') conformation "forbidden" or filtered. T0506 169 :DLRTDL 2bf5A 62 :TLEEQL T0506 177 :A 2bf5A 70 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=35635 # 1wer.169.294 read from T0506.t04.many.frag # found chain 1wer in training set T0506 169 :DLRTDLSGA 1wer 1008 :ELRTLSNER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35636 # 2et1A.169.177 read from T0506.t04.many.frag # found chain 2et1A in template set T0506 169 :DLRTDLSGA 2et1A 178 :VLTKALRVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35637 # 1jmkC.169.126 read from T0506.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)G176 (1jmkC)D135 because D (zeta) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1jmkC 128 :ALMNVNR T0506 177 :A 1jmkC 136 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=35639 # 2ao9A.169.63 read from T0506.t04.many.frag # found chain 2ao9A in template set T0506 169 :DLRTDLSGA 2ao9A 64 :TLWEWRTKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35640 # 1mxrA.169.134 read from T0506.t04.many.frag # found chain 1mxrA in training set Warning: unaligning (T0506)G176 (1mxrA)T142 because G (3-10) conformation "forbidden" or filtered. T0506 169 :DLRTDLS 1mxrA 135 :VVFDDIV T0506 177 :A 1mxrA 143 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=35642 1wwiA expands to /projects/compbio/data/pdb/1wwi.pdb.gz 1wwiA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wwiA.169.83 read from T0506.t04.many.frag # adding 1wwiA to template set # found chain 1wwiA in template set T0506 169 :DLRTDLSGA 1wwiA 84 :PVLDALAAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35643 # 1yt8A.169.382 read from T0506.t04.many.frag # found chain 1yt8A in template set T0506 169 :DLRTDLSGA 1yt8A 383 :TLADWLGEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35644 # 1vhtA.169.70 read from T0506.t04.many.frag # found chain 1vhtA in training set Warning: unaligning (T0506)A177 (1vhtA)N77 because D (zeta) conformation "forbidden" or filtered. T0506 169 :DLRTDLSG 1vhtA 69 :ALRERIFA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35645 # 1vdkA.170.397 read from T0506.t04.many.frag # found chain 1vdkA in training set T0506 170 :LRTDLSGAE 1vdkA 398 :IEEYLQKNP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35646 # 1hlvA.170.41 read from T0506.t04.many.frag # found chain 1hlvA in template set Warning: unaligning (T0506)G176 (1hlvA)N48 because G (3-10) conformation "forbidden" or filtered. T0506 170 :LRTDLS 1hlvA 42 :LSTILK T0506 177 :AE 1hlvA 49 :KR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35648 # 1zybA.170.126 read from T0506.t04.many.frag # found chain 1zybA in template set T0506 170 :LRTDLSGAE 1zybA 115 :VLSDLFRYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35649 # 1i2tA.170.35 read from T0506.t04.many.frag # found chain 1i2tA in training set T0506 170 :LRTDLSGAE 1i2tA 1044 :LLLLLASED Number of specific fragments extracted= 1 number of extra gaps= 0 total=35650 # 1h6kA.170.497 read from T0506.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0506)G176 (1h6kA)D523 because G (3-10) conformation "forbidden" or filtered. T0506 170 :LRTDLS 1h6kA 517 :IFSILK T0506 177 :AE 1h6kA 524 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35652 # 1ydiA.170.161 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 170 :LRTDLSGAE 1ydiA 157 :LVTYTKNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35653 # 1b43A.170.249 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 170 :LRTDLSGAE 1b43A 249 :ALEIVRHSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35654 # 1onrA.170.279 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 170 :LRTDLSGAE 1onrA 281 :FLWQHNQDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35655 # 1orjA.170.102 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 170 :LRTDLSGAE 1orjA 1103 :LQKILEILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35656 # 1tljA.170.165 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 170 :LRTDLSGAE 1tljA 166 :IKTLVNVCN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35657 # 2ao9A.170.64 read from T0506.t04.many.frag # found chain 2ao9A in template set T0506 170 :LRTDLSGAE 2ao9A 65 :LWEWRTKNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35658 # 1ru3A.170.476 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 170 :LRTDLSGAE 1ru3A 477 :VLELREIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35659 # 1ir6A.170.256 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 170 :LRTDLSGAE 1ir6A 296 :AQALVGELH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35660 # 2d3dA.170.52 read from T0506.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0506)L174 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0506 170 :LRTD 2d3dA 488 :LEKK T0506 175 :SG 2d3dA 493 :VL T0506 178 :E 2d3dA 496 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=35663 # 1b4fA.170.48 read from T0506.t04.many.frag # found chain 1b4fA in template set T0506 170 :LRTDLSGAE 1b4fA 49 :ILRVGVTLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35664 # 1i88A.170.312 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)A177 (1i88A)K320 because P (beta_P) conformation "forbidden" or filtered. T0506 170 :LRTDLSG 1i88A 313 :VEQKLAL T0506 178 :E 1i88A 321 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=35666 # 1wer.170.295 read from T0506.t04.many.frag # found chain 1wer in training set Warning: unaligning (T0506)E178 (1wer)G1017 because S (epsilon) conformation "forbidden" or filtered. T0506 170 :LRTDLSGA 1wer 1009 :LRTLSNER Number of specific fragments extracted= 1 number of extra gaps= 1 total=35667 1ywfA expands to /projects/compbio/data/pdb/1ywf.pdb.gz 1ywfA:# 1ywfA.170.204 read from T0506.t04.many.frag # adding 1ywfA to template set # found chain 1ywfA in template set T0506 170 :LRTDLSGAE 1ywfA 185 :IVADYLRSN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35668 # 1io1A.170.358 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 170 :LRTDLSGAE 1io1A 411 :IDAALAQVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35669 # 2b0cA.170.40 read from T0506.t04.many.frag # found chain 2b0cA in template set Warning: unaligning (T0506)G176 (2b0cA)M47 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (2b0cA)G48 because Y (epsilon') conformation "forbidden" or filtered. T0506 170 :LRTDLS 2b0cA 41 :LKKSFH T0506 178 :E 2b0cA 49 :E Number of specific fragments extracted= 2 number of extra gaps= 1 total=35671 # 1gxqA.170.55 read from T0506.t04.many.frag # found chain 1gxqA in template set Warning: unaligning (T0506)E178 (1gxqA)N187 because N (gamma') conformation "forbidden" or filtered. T0506 170 :LRTDLSGA 1gxqA 179 :LLNHVWGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=35672 1j1jA expands to /projects/compbio/data/pdb/1j1j.pdb.gz 1j1jA:# 1j1jA.170.202 read from T0506.t04.many.frag # adding 1j1jA to template set # found chain 1j1jA in template set Warning: unaligning (T0506)G176 (1j1jA)G197 because G (3-10) conformation "forbidden" or filtered. T0506 170 :LRTDLS 1j1jA 191 :LRKRYD T0506 177 :AE 1j1jA 198 :LK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35674 # 1r6xA.170.359 read from T0506.t04.many.frag # found chain 1r6xA in training set T0506 170 :LRTDLSGAE 1r6xA 361 :LRRRLRVGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35675 # 1lm5A.170.65 read from T0506.t04.many.frag # found chain 1lm5A in training set Warning: unaligning (T0506)L174 (1lm5A)G2678 because T (delta_L) conformation "forbidden" or filtered. T0506 170 :LRTD 1lm5A 2674 :AVSQ T0506 175 :SGAE 1lm5A 2679 :VIDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35677 # 2et1A.170.178 read from T0506.t04.many.frag # found chain 2et1A in template set Warning: unaligning (T0506)S175 (2et1A)R184 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (2et1A)V185 because E (beta_S) conformation "forbidden" or filtered. T0506 170 :LRTDL 2et1A 179 :LTKAL T0506 177 :AE 2et1A 186 :EA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35679 # 1aisB.170.114 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 170 :LRTDLSGAE 1aisB 1215 :FADELGLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35680 # 1d5yA.170.25 read from T0506.t04.many.frag # found chain 1d5yA in template set Warning: unaligning (T0506)G176 (1d5yA)S34 because P (beta_P) conformation "forbidden" or filtered. T0506 170 :LRTDLS 1d5yA 28 :AAKAGY T0506 177 :AE 1d5yA 35 :KW Number of specific fragments extracted= 2 number of extra gaps= 1 total=35682 # 1jhgA.170.63 read from T0506.t04.many.frag # found chain 1jhgA in training set T0506 170 :LRTDLSGAE 1jhgA 71 :LKNELGAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35683 2c5kT expands to /projects/compbio/data/pdb/2c5k.pdb.gz 2c5kT:Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 301, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 305, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2c5kT # 2c5kT.170.40 read from T0506.t04.many.frag # adding 2c5kT to template set # found chain 2c5kT in template set T0506 170 :LRTDLSGAE 2c5kT 41 :IQDILKDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35684 # 1jmkC.170.127 read from T0506.t04.many.frag # found chain 1jmkC in training set Warning: unaligning (T0506)G176 (1jmkC)D135 because D (zeta) conformation "forbidden" or filtered. T0506 170 :LRTDLS 1jmkC 129 :LMNVNR T0506 177 :AE 1jmkC 136 :NE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35686 # 1hlvA.171.42 read from T0506.t04.many.frag # found chain 1hlvA in template set T0506 171 :RTDLSGAEE 1hlvA 43 :STILKNKRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35687 # 1vdkA.171.398 read from T0506.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0506)G176 (1vdkA)K404 because G (3-10) conformation "forbidden" or filtered. T0506 171 :RTDLS 1vdkA 399 :EEYLQ T0506 177 :AEE 1vdkA 405 :NPM Number of specific fragments extracted= 2 number of extra gaps= 1 total=35689 # 1zybA.171.127 read from T0506.t04.many.frag # found chain 1zybA in template set T0506 171 :RTDLSGAEE 1zybA 116 :LSDLFRYDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35690 # 1i2tA.171.36 read from T0506.t04.many.frag # found chain 1i2tA in training set Warning: unaligning (T0506)G176 (1i2tA)S1050 because D (zeta) conformation "forbidden" or filtered. T0506 171 :RTDLS 1i2tA 1045 :LLLLA T0506 177 :AEE 1i2tA 1051 :EDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35692 # 1tljA.171.166 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 171 :RTDLSGAEE 1tljA 167 :KTLVNVCNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35693 # 1aisB.171.115 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)S175 (1aisB)G1220 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1aisB)S1222 because L (left) conformation "forbidden" or filtered. T0506 171 :RTDL 1aisB 1216 :ADEL T0506 176 :G 1aisB 1221 :L T0506 178 :EE 1aisB 1223 :EK Number of specific fragments extracted= 3 number of extra gaps= 2 total=35696 # 1ywfA.171.205 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 171 :RTDLSGAEE 1ywfA 186 :VADYLRSND Number of specific fragments extracted= 1 number of extra gaps= 0 total=35697 # 1ydiA.171.162 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 171 :RTDLSGAEE 1ydiA 158 :VTYTKNLGP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35698 # 1i88A.171.313 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)S175 (1i88A)A318 because L (left) conformation "forbidden" or filtered. T0506 171 :RTDL 1i88A 314 :EQKL T0506 176 :GAEE 1i88A 319 :LKPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35700 # 1b43A.171.250 read from T0506.t04.many.frag # found chain 1b43A in template set T0506 171 :RTDLSGAEE 1b43A 250 :LEIVRHSKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35701 # 2ao9A.171.65 read from T0506.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0506)G176 (2ao9A)K71 because G (3-10) conformation "forbidden" or filtered. T0506 171 :RTDLS 2ao9A 66 :WEWRT T0506 177 :AEE 2ao9A 72 :NQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=35703 # 1io1A.171.359 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 171 :RTDLSGAEE 1io1A 412 :DAALAQVDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35704 # 1h6kA.171.498 read from T0506.t04.many.frag # found chain 1h6kA in template set Warning: unaligning (T0506)G176 (1h6kA)D523 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6kA)F539 T0506 171 :RTDLS 1h6kA 518 :FSILK T0506 177 :AE 1h6kA 524 :VP Number of specific fragments extracted= 2 number of extra gaps= 1 total=35706 # 1ru3A.171.477 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 171 :RTDLSGAEE 1ru3A 478 :LELREIARK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35707 # 1onrA.171.280 read from T0506.t04.many.frag # found chain 1onrA in template set T0506 171 :RTDLSGAEE 1onrA 282 :LWQHNQDPM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35708 # 1d5yA.171.26 read from T0506.t04.many.frag # found chain 1d5yA in template set T0506 171 :RTDLSGAEE 1d5yA 29 :AKAGYSKWH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35709 # 1ir6A.171.257 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 171 :RTDLSGAEE 1ir6A 297 :QALVGELHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35710 # 1j1jA.171.203 read from T0506.t04.many.frag # found chain 1j1jA in template set Warning: unaligning (T0506)G176 (1j1jA)G197 because G (3-10) conformation "forbidden" or filtered. T0506 171 :RTDLS 1j1jA 192 :RKRYD T0506 177 :AEE 1j1jA 198 :LKY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35712 # 1kb9D.171.54 read from T0506.t04.many.frag # found chain 1kb9D in template set Warning: unaligning (T0506)T172 (1kb9D)G117 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1kb9D)T121 because P (beta_P) conformation "forbidden" or filtered. T0506 171 :R 1kb9D 116 :V T0506 173 :DLS 1kb9D 118 :VSH T0506 177 :AEE 1kb9D 122 :NEE Number of specific fragments extracted= 3 number of extra gaps= 2 total=35715 # 1b4fA.171.49 read from T0506.t04.many.frag # found chain 1b4fA in template set T0506 171 :RTDLSGAEE 1b4fA 50 :LRVGVTLAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35716 # 2c5kT.171.41 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 171 :RTDLSGAEE 2c5kT 42 :QDILKDVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35717 # 1orjA.171.103 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 171 :RTDLSGAEE 1orjA 1104 :QKILEILKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35718 # 2d3dA.171.53 read from T0506.t04.many.frag # found chain 2d3dA in template set Warning: unaligning (T0506)L174 (2d3dA)G492 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (2d3dA)A495 because P (beta_P) conformation "forbidden" or filtered. T0506 171 :RTD 2d3dA 489 :EKK T0506 175 :SG 2d3dA 493 :VL T0506 178 :EE 2d3dA 496 :LG Number of specific fragments extracted= 3 number of extra gaps= 2 total=35721 # 1wer.171.296 read from T0506.t04.many.frag # found chain 1wer in training set T0506 171 :RTDLSGAEE 1wer 1010 :RTLSNERGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35722 # 1wwiA.171.85 read from T0506.t04.many.frag # found chain 1wwiA in template set Warning: unaligning (T0506)E179 (1wwiA)P94 because P (beta_P) conformation "forbidden" or filtered. T0506 171 :RTDLSGAE 1wwiA 86 :LDALAALP Number of specific fragments extracted= 1 number of extra gaps= 1 total=35723 1r5iD expands to /projects/compbio/data/pdb/1r5i.pdb.gz 1r5iD:# 1r5iD.171.103 read from T0506.t04.many.frag # adding 1r5iD to template set # found chain 1r5iD in template set T0506 171 :RTDLSGAEE 1r5iD 101 :KRNIAILDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35724 1nh2B expands to /projects/compbio/data/pdb/1nh2.pdb.gz 1nh2B:Skipped atom 1505, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1507, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1509, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1511, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 1nh2B Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 1nh2B # 1nh2B.171.24 read from T0506.t04.many.frag # adding 1nh2B to template set # found chain 1nh2B in template set Warning: unaligning (T0506)G176 (1nh2B)D31 because Y (epsilon') conformation "forbidden" or filtered. T0506 171 :RTDLS 1nh2B 26 :ENAGI T0506 177 :AEE 1nh2B 32 :EQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35726 # 2a6hE.171.9 read from T0506.t04.many.frag # found chain 2a6hE in template set Warning: unaligning (T0506)G176 (2a6hE)S15 because E (beta_S) conformation "forbidden" or filtered. T0506 171 :RTDLS 2a6hE 10 :FGMVD T0506 177 :AEE 2a6hE 16 :KYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35728 2ap3A expands to /projects/compbio/data/pdb/2ap3.pdb.gz 2ap3A:# 2ap3A.171.111 read from T0506.t04.many.frag # adding 2ap3A to template set # found chain 2ap3A in template set T0506 171 :RTDLSGAEE 2ap3A 112 :RKEVKQLDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35729 # 1mxrA.171.136 read from T0506.t04.many.frag # found chain 1mxrA in training set T0506 171 :RTDLSGAEE 1mxrA 137 :FDDIVTNEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35730 # 1aisB.172.116 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)G176 (1aisB)L1221 because S (epsilon) conformation "forbidden" or filtered. T0506 172 :TDLS 1aisB 1217 :DELG T0506 177 :AEEL 1aisB 1222 :SEKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35732 # 1hlvA.172.43 read from T0506.t04.many.frag # found chain 1hlvA in template set Warning: unaligning (T0506)G176 (1hlvA)N48 because G (3-10) conformation "forbidden" or filtered. T0506 172 :TDLS 1hlvA 44 :TILK T0506 177 :AEEL 1hlvA 49 :KRAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=35734 # 1zybA.172.128 read from T0506.t04.many.frag # found chain 1zybA in template set T0506 172 :TDLSGAEEL 1zybA 117 :SDLFRYDIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35735 # 1vdkA.172.399 read from T0506.t04.many.frag # found chain 1vdkA in training set T0506 172 :TDLSGAEEL 1vdkA 400 :EYLQKNPML Number of specific fragments extracted= 1 number of extra gaps= 0 total=35736 # 1tljA.172.167 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 172 :TDLSGAEEL 1tljA 168 :TLVNVCNEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35737 # 1ywfA.172.206 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 172 :TDLSGAEEL 1ywfA 187 :ADYLRSNDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35738 # 1i2tA.172.37 read from T0506.t04.many.frag # found chain 1i2tA in training set Warning: unaligning (T0506)G176 (1i2tA)S1050 because D (zeta) conformation "forbidden" or filtered. T0506 172 :TDLS 1i2tA 1046 :LLLA T0506 177 :AEEL 1i2tA 1051 :EDSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35740 # 1io1A.172.360 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 172 :TDLSGAEEL 1io1A 413 :AALAQVDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35741 # 1i88A.172.314 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)S175 (1i88A)A318 because L (left) conformation "forbidden" or filtered. T0506 172 :TDL 1i88A 315 :QKL T0506 176 :GAEEL 1i88A 319 :LKPEK Number of specific fragments extracted= 2 number of extra gaps= 1 total=35743 # 1ru3A.172.478 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 172 :TDLSGAEEL 1ru3A 479 :ELREIARKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35744 # 2c5kT.172.42 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 172 :TDLSGAEEL 2c5kT 43 :DILKDVEET Number of specific fragments extracted= 1 number of extra gaps= 0 total=35745 # 1ir6A.172.258 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 172 :TDLSGAEEL 1ir6A 298 :ALVGELHRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35746 # 1r5iD.172.104 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 172 :TDLSGAEEL 1r5iD 102 :RNIAILDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35747 # 2ao9A.172.66 read from T0506.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0506)G176 (2ao9A)K71 because G (3-10) conformation "forbidden" or filtered. T0506 172 :TDLS 2ao9A 67 :EWRT T0506 177 :AEEL 2ao9A 72 :NQDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35749 # 1ydiA.172.163 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 172 :TDLSGAEEL 1ydiA 159 :TYTKNLGPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35750 # 1j1jA.172.204 read from T0506.t04.many.frag # found chain 1j1jA in template set T0506 172 :TDLSGAEEL 1j1jA 193 :KRYDGLKYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35751 # 1kb9D.172.55 read from T0506.t04.many.frag # found chain 1kb9D in template set Warning: unaligning (T0506)T172 (1kb9D)G117 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1kb9D)T121 because P (beta_P) conformation "forbidden" or filtered. T0506 173 :DLS 1kb9D 118 :VSH T0506 177 :AEEL 1kb9D 122 :NEEV Number of specific fragments extracted= 2 number of extra gaps= 2 total=35753 # 1d5yA.172.27 read from T0506.t04.many.frag # found chain 1d5yA in template set Warning: unaligning (T0506)G176 (1d5yA)S34 because P (beta_P) conformation "forbidden" or filtered. T0506 172 :TDLS 1d5yA 30 :KAGY T0506 177 :AEEL 1d5yA 35 :KWHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35755 # 1b4fA.172.50 read from T0506.t04.many.frag # found chain 1b4fA in template set Warning: unaligning (T0506)L174 (1b4fA)G53 because T (delta_L) conformation "forbidden" or filtered. T0506 172 :TD 1b4fA 51 :RV T0506 175 :SGAEEL 1b4fA 54 :VTLAGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35757 # 1orjA.172.104 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 172 :TDLSGAEEL 1orjA 1105 :KILEILKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35758 # 2ap3A.172.112 read from T0506.t04.many.frag # found chain 2ap3A in template set T0506 172 :TDLSGAEEL 2ap3A 113 :KEVKQLDDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35759 # 1onrA.172.281 read from T0506.t04.many.frag # found chain 1onrA in template set Warning: unaligning (T0506)A177 (1onrA)D288 because N (gamma') conformation "forbidden" or filtered. T0506 172 :TDLSG 1onrA 283 :WQHNQ T0506 178 :EEL 1onrA 289 :PMA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35761 # 1eyhA.172.117 read from T0506.t04.many.frag # found chain 1eyhA in training set T0506 172 :TDLSGAEEL 1eyhA 132 :ALLRDEDRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35762 # 1jfmA.172.140 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 172 :TDLSGAEEL 1jfmA 141 :NKWKDDGEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35763 # 1b43A.172.251 read from T0506.t04.many.frag # found chain 1b43A in template set Warning: unaligning (T0506)G176 (1b43A)H255 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E179 (1b43A)D258 because D (zeta) conformation "forbidden" or filtered. T0506 172 :TDLS 1b43A 251 :EIVR T0506 177 :AE 1b43A 256 :SK T0506 180 :L 1b43A 259 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=35766 # 2cwcA.172.277 read from T0506.t04.many.frag # found chain 2cwcA in template set T0506 172 :TDLSGAEEL 2cwcA 278 :RALHLREEM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35767 # 1orjA.172.20 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 172 :TDLSGAEEL 1orjA 1021 :QIILLYDKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35768 # 1x3mA.172.122 read from T0506.t04.many.frag # found chain 1x3mA in template set T0506 172 :TDLSGAEEL 1x3mA 110 :RVSPLAPLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35769 # 256bA.172.59 read from T0506.t04.many.frag # found chain 256bA in training set T0506 172 :TDLSGAEEL 256bA 60 :DFRHGFDIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35770 # 1wwiA.172.86 read from T0506.t04.many.frag # found chain 1wwiA in template set Warning: unaligning (T0506)A177 (1wwiA)L92 because P (beta_P) conformation "forbidden" or filtered. T0506 172 :TDLSG 1wwiA 87 :DALAA T0506 178 :EEL 1wwiA 93 :PPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=35772 # 1aisB.173.117 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)G176 (1aisB)L1221 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1aisB)S1222 because L (left) conformation "forbidden" or filtered. T0506 173 :DLS 1aisB 1218 :ELG T0506 178 :EELM 1aisB 1223 :EKVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35774 # 1io1A.173.361 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 173 :DLSGAEELM 1io1A 414 :ALAQVDTLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35775 # 1hlvA.173.44 read from T0506.t04.many.frag # found chain 1hlvA in template set T0506 173 :DLSGAEELM 1hlvA 45 :ILKNKRAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35776 # 1tljA.173.168 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 173 :DLSGAEELM 1tljA 169 :LVNVCNEVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35777 # 1zybA.173.129 read from T0506.t04.many.frag # found chain 1zybA in template set Warning: unaligning (T0506)A177 (1zybA)Y122 because E (beta_S) conformation "forbidden" or filtered. T0506 173 :DLSG 1zybA 118 :DLFR T0506 178 :EELM 1zybA 123 :DIFR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35779 # 1ywfA.173.207 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 173 :DLSGAEELM 1ywfA 188 :DYLRSNDSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35780 # 1i88A.173.315 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)S175 (1i88A)A318 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1i88A)L319 because P (beta_P) conformation "forbidden" or filtered. T0506 173 :DL 1i88A 316 :KL T0506 177 :AEELM 1i88A 320 :KPEKM Number of specific fragments extracted= 2 number of extra gaps= 1 total=35782 # 1i2tA.173.38 read from T0506.t04.many.frag # found chain 1i2tA in training set T0506 173 :DLSGAEELM 1i2tA 1047 :LLASEDSLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35783 # 1r5iD.173.105 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 173 :DLSGAEELM 1r5iD 103 :NIAILDEIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35784 # 1b4fA.173.51 read from T0506.t04.many.frag # found chain 1b4fA in template set Warning: unaligning (T0506)L174 (1b4fA)G53 because T (delta_L) conformation "forbidden" or filtered. T0506 173 :D 1b4fA 52 :V T0506 175 :SGAEELM 1b4fA 54 :VTLAGHQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35786 # 1vdkA.173.400 read from T0506.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0506)G176 (1vdkA)K404 because G (3-10) conformation "forbidden" or filtered. T0506 173 :DLS 1vdkA 401 :YLQ T0506 177 :AEELM 1vdkA 405 :NPMLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35788 # 1ru3A.173.479 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 173 :DLSGAEELM 1ru3A 480 :LREIARKKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35789 # 2c5kT.173.43 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 173 :DLSGAEELM 2c5kT 44 :ILKDVEETI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35790 # 2ao9A.173.67 read from T0506.t04.many.frag # found chain 2ao9A in template set T0506 173 :DLSGAEELM 2ao9A 68 :WRTKNQDFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35791 # 1x3mA.173.123 read from T0506.t04.many.frag # found chain 1x3mA in template set T0506 173 :DLSGAEELM 1x3mA 111 :VSPLAPLHN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35792 # 1kb9D.173.56 read from T0506.t04.many.frag # found chain 1kb9D in template set Warning: unaligning (T0506)G176 (1kb9D)T121 because P (beta_P) conformation "forbidden" or filtered. T0506 173 :DLS 1kb9D 118 :VSH T0506 177 :AEELM 1kb9D 122 :NEEVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35794 # 1ir6A.173.259 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 173 :DLSGAEELM 1ir6A 299 :LVGELHRLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35795 # 1j1jA.173.205 read from T0506.t04.many.frag # found chain 1j1jA in template set Warning: unaligning (T0506)G176 (1j1jA)G197 because G (3-10) conformation "forbidden" or filtered. T0506 173 :DLS 1j1jA 194 :RYD T0506 177 :AEELM 1j1jA 198 :LKYDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35797 # 1ydiA.173.164 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 173 :DLSGAEELM 1ydiA 160 :YTKNLGPGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35798 # 256bA.173.60 read from T0506.t04.many.frag # found chain 256bA in training set T0506 173 :DLSGAEELM 256bA 61 :FRHGFDILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35799 # 1jfmA.173.141 read from T0506.t04.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)G176 (1jfmA)D145 because G (3-10) conformation "forbidden" or filtered. T0506 173 :DLS 1jfmA 142 :KWK T0506 177 :AEELM 1jfmA 146 :DGEFV Number of specific fragments extracted= 2 number of extra gaps= 1 total=35801 # 1d5yA.173.28 read from T0506.t04.many.frag # found chain 1d5yA in template set Warning: unaligning (T0506)G176 (1d5yA)S34 because P (beta_P) conformation "forbidden" or filtered. T0506 173 :DLS 1d5yA 31 :AGY T0506 177 :AEELM 1d5yA 35 :KWHLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35803 # 2ap3A.173.113 read from T0506.t04.many.frag # found chain 2ap3A in template set T0506 173 :DLSGAEELM 2ap3A 114 :EVKQLDDVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35804 # 1vp6A.173.112 read from T0506.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0506)A177 (1vp6A)S334 because D (zeta) conformation "forbidden" or filtered. T0506 173 :DLSG 1vp6A 330 :LCSS T0506 178 :EELM 1vp6A 335 :PEIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35806 1jb0A expands to /projects/compbio/data/pdb/1jb0.pdb.gz 1jb0A:# 1jb0A.173.432 read from T0506.t04.many.frag # adding 1jb0A to template set # found chain 1jb0A in template set Warning: unaligning (T0506)G176 (1jb0A)H436 because G (3-10) conformation "forbidden" or filtered. T0506 173 :DLS 1jb0A 433 :VLR T0506 177 :AEELM 1jb0A 437 :RDAII Number of specific fragments extracted= 2 number of extra gaps= 1 total=35808 # 1na6A.173.243 read from T0506.t04.many.frag # found chain 1na6A in template set Warning: unaligning (T0506)D173 (1na6A)G244 because S (epsilon) conformation "forbidden" or filtered. T0506 174 :LSGAEELM 1na6A 245 :FGSVDEFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=35809 # 2cwcA.173.278 read from T0506.t04.many.frag # found chain 2cwcA in template set Warning: unaligning (T0506)S175 (2cwcA)H281 because P (beta_P) conformation "forbidden" or filtered. T0506 173 :DL 2cwcA 279 :AL T0506 176 :GAEELM 2cwcA 282 :LREEME Number of specific fragments extracted= 2 number of extra gaps= 1 total=35811 # 1eyhA.173.118 read from T0506.t04.many.frag # found chain 1eyhA in training set T0506 173 :DLSGAEELM 1eyhA 133 :LLRDEDRLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35812 # 1orjA.173.21 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 173 :DLSGAEELM 1orjA 1022 :IILLYDKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35813 # 1orjA.173.105 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 173 :DLSGAEELM 1orjA 1106 :ILEILKDLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35814 # 1aisB.174.118 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)S175 (1aisB)G1220 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1aisB)L1221 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1aisB)S1222 because L (left) conformation "forbidden" or filtered. T0506 174 :L 1aisB 1219 :L T0506 178 :EELMA 1aisB 1223 :EKVRR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35816 # 1tljA.174.169 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 174 :LSGAEELMA 1tljA 170 :VNVCNEVLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35817 # 1io1A.174.362 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 174 :LSGAEELMA 1io1A 415 :LAQVDTLRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=35818 # 1hlvA.174.45 read from T0506.t04.many.frag # found chain 1hlvA in template set T0506 174 :LSGAEELMA 1hlvA 46 :LKNKRAILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35819 # 1r5iD.174.106 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 174 :LSGAEELMA 1r5iD 104 :IAILDEIMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35820 # 1ru3A.174.480 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 174 :LSGAEELMA 1ru3A 481 :REIARKKYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35821 # 1ywfA.174.208 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 174 :LSGAEELMA 1ywfA 189 :YLRSNDSVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=35822 # 1i88A.174.316 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)S175 (1i88A)A318 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G176 (1i88A)L319 because P (beta_P) conformation "forbidden" or filtered. T0506 174 :L 1i88A 317 :L T0506 177 :AEELMA 1i88A 320 :KPEKMN Number of specific fragments extracted= 2 number of extra gaps= 1 total=35824 # 1zybA.174.130 read from T0506.t04.many.frag # found chain 1zybA in template set T0506 174 :LSGAEELMA 1zybA 119 :LFRYDIFRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35825 # 2c5kT.174.44 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 174 :LSGAEELMA 2c5kT 45 :LKDVEETIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35826 # 1jfmA.174.142 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 174 :LSGAEELMA 1jfmA 143 :WKDDGEFVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35827 # 1ir6A.174.260 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 174 :LSGAEELMA 1ir6A 300 :VGELHRLNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35828 # 1b4fA.174.52 read from T0506.t04.many.frag # found chain 1b4fA in template set T0506 174 :LSGAEELMA 1b4fA 53 :GVTLAGHQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35829 # 1xl3C.174.34 read from T0506.t04.many.frag # found chain 1xl3C in template set Warning: unaligning (T0506)G176 (1xl3C)T37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xl3C)V42 Warning: unaligning (T0506)M181 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xl3C)V42 T0506 174 :LS 1xl3C 35 :LP T0506 177 :AE 1xl3C 38 :PE T0506 182 :A 1xl3C 43 :R Number of specific fragments extracted= 3 number of extra gaps= 1 total=35832 Number of alignments=2018 # 256bA.174.61 read from T0506.t04.many.frag # found chain 256bA in training set T0506 174 :LSGAEELMA 256bA 62 :RHGFDILVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35833 # 1vdkA.174.401 read from T0506.t04.many.frag # found chain 1vdkA in training set Warning: unaligning (T0506)A177 (1vdkA)N405 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)M181 (1vdkA)A409 because G (3-10) conformation "forbidden" or filtered. T0506 174 :LSG 1vdkA 402 :LQK T0506 178 :EEL 1vdkA 406 :PML T0506 182 :A 1vdkA 410 :T Number of specific fragments extracted= 3 number of extra gaps= 2 total=35836 # 1ydiA.174.165 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 174 :LSGAEELMA 1ydiA 161 :TKNLGPGMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35837 # 1i2tA.174.39 read from T0506.t04.many.frag # found chain 1i2tA in training set T0506 174 :LSGAEELMA 1i2tA 1048 :LASEDSLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35838 # 1j1jA.174.206 read from T0506.t04.many.frag # found chain 1j1jA in template set T0506 174 :LSGAEELMA 1j1jA 195 :YDGLKYDVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35839 # 1t77A.174.321 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)G176 (1t77A)T2399 because E (beta_S) conformation "forbidden" or filtered. T0506 174 :LS 1t77A 2397 :AK T0506 177 :AEELMA 1t77A 2400 :SEEFVH Number of specific fragments extracted= 2 number of extra gaps= 1 total=35841 # 1vp6A.174.113 read from T0506.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0506)A177 (1vp6A)S334 because D (zeta) conformation "forbidden" or filtered. T0506 174 :LSG 1vp6A 331 :CSS T0506 178 :EELMA 1vp6A 335 :PEIAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=35843 # 1na6A.174.244 read from T0506.t04.many.frag # found chain 1na6A in template set T0506 174 :LSGAEELMA 1na6A 245 :FGSVDEFIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35844 # 2ap3A.174.114 read from T0506.t04.many.frag # found chain 2ap3A in template set T0506 174 :LSGAEELMA 2ap3A 115 :VKQLDDVLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35845 # 2ao9A.174.68 read from T0506.t04.many.frag # found chain 2ao9A in template set Warning: unaligning (T0506)G176 (2ao9A)K71 because G (3-10) conformation "forbidden" or filtered. T0506 174 :LS 2ao9A 69 :RT T0506 177 :AEELMA 2ao9A 72 :NQDFIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35847 # 1x3mA.174.124 read from T0506.t04.many.frag # found chain 1x3mA in template set T0506 174 :LSGAEELMA 1x3mA 112 :SPLAPLHNY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35848 1c4oA expands to /projects/compbio/data/pdb/1c4o.pdb.gz 1c4oA:# 1c4oA.174.557 read from T0506.t04.many.frag # adding 1c4oA to template set # found chain 1c4oA in template set T0506 174 :LSGAEELMA 1c4oA 559 :IEETNRRRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35849 # 1orjA.174.106 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 174 :LSGAEELMA 1orjA 1107 :LEILKDLRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35850 # 1jb0A.174.433 read from T0506.t04.many.frag # found chain 1jb0A in template set Warning: unaligning (T0506)G176 (1jb0A)H436 because G (3-10) conformation "forbidden" or filtered. T0506 174 :LS 1jb0A 434 :LR T0506 177 :AEELMA 1jb0A 437 :RDAIIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35852 # 1ks8A.174.224 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 174 :LSGAEELMA 1ks8A 225 :ATNDNTYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35853 # 1mk0A.174.64 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 174 :LSGAEELMA 1mk0A 65 :PYEKDLIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35854 # 1aisB.175.119 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)S175 (1aisB)G1220 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1aisB)S1222 because L (left) conformation "forbidden" or filtered. T0506 176 :G 1aisB 1221 :L T0506 178 :EELMAA 1aisB 1223 :EKVRRR Number of specific fragments extracted= 2 number of extra gaps= 2 total=35856 # 1tljA.175.170 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 175 :SGAEELMAA 1tljA 171 :NVCNEVLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35857 # 1io1A.175.363 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 175 :SGAEELMAA 1io1A 416 :AQVDTLRSD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35858 # 1r5iD.175.107 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 175 :SGAEELMAA 1r5iD 105 :AILDEIMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35859 # 1hlvA.175.46 read from T0506.t04.many.frag # found chain 1hlvA in template set Warning: unaligning (T0506)G176 (1hlvA)N48 because G (3-10) conformation "forbidden" or filtered. T0506 175 :S 1hlvA 47 :K T0506 177 :AEELMAA 1hlvA 49 :KRAILAS Number of specific fragments extracted= 2 number of extra gaps= 1 total=35861 # 256bA.175.62 read from T0506.t04.many.frag # found chain 256bA in training set Warning: unaligning (T0506)G176 (256bA)G64 because H (helix) conformation "forbidden" or filtered. T0506 175 :S 256bA 63 :H T0506 177 :AEELMAA 256bA 65 :FDILVGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35863 # 1ywfA.175.209 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 175 :SGAEELMAA 1ywfA 190 :LRSNDSVPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35864 # 1ru3A.175.481 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 175 :SGAEELMAA 1ru3A 482 :EIARKKYAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35865 # 1i88A.175.317 read from T0506.t04.many.frag # found chain 1i88A in training set Warning: unaligning (T0506)S175 (1i88A)A318 because L (left) conformation "forbidden" or filtered. T0506 176 :GAEELMAA 1i88A 319 :LKPEKMNA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35866 # 2c5kT.175.45 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 175 :SGAEELMAA 2c5kT 46 :KDVEETIVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35867 # 1vp6A.175.114 read from T0506.t04.many.frag # found chain 1vp6A in training set T0506 175 :SGAEELMAA 1vp6A 332 :SSSPEIAEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35868 # 1jfmA.175.143 read from T0506.t04.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)G176 (1jfmA)D145 because G (3-10) conformation "forbidden" or filtered. T0506 175 :S 1jfmA 144 :K T0506 177 :AEELMAA 1jfmA 146 :DGEFVKQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=35870 # 1ks8A.175.225 read from T0506.t04.many.frag # found chain 1ks8A in training set Warning: unaligning (T0506)A177 (1ks8A)D228 because N (gamma') conformation "forbidden" or filtered. T0506 175 :SG 1ks8A 226 :TN T0506 178 :EELMAA 1ks8A 229 :NTYLNT Number of specific fragments extracted= 2 number of extra gaps= 1 total=35872 # 1orjA.175.107 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 175 :SGAEELMAA 1orjA 1108 :EILKDLREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35873 # 1zybA.175.131 read from T0506.t04.many.frag # found chain 1zybA in template set T0506 175 :SGAEELMAA 1zybA 120 :FRYDIFRLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35874 # 1b4fA.175.53 read from T0506.t04.many.frag # found chain 1b4fA in template set T0506 175 :SGAEELMAA 1b4fA 54 :VTLAGHQKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35875 # 1xl3C.175.35 read from T0506.t04.many.frag # found chain 1xl3C in template set Warning: unaligning (T0506)E179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xl3C)V42 Warning: unaligning (T0506)M181 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xl3C)V42 T0506 175 :SGAE 1xl3C 36 :PTPE T0506 182 :AA 1xl3C 43 :RF Number of specific fragments extracted= 2 number of extra gaps= 0 total=35877 Number of alignments=2019 # 1floA.175.147 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)G176 (1floA)E150 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E179 (1floA)S153 because P (beta_P) conformation "forbidden" or filtered. T0506 175 :S 1floA 149 :S T0506 177 :AE 1floA 151 :GE T0506 180 :LMAA 1floA 154 :IWEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=35880 # 1ir6A.175.261 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 175 :SGAEELMAA 1ir6A 301 :GELHRLNAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35881 # 1c4oA.175.558 read from T0506.t04.many.frag # found chain 1c4oA in template set T0506 175 :SGAEELMAA 1c4oA 560 :EETNRRRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35882 # 1ydiA.175.166 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 175 :SGAEELMAA 1ydiA 162 :KNLGPGMTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35883 # 1t77A.175.322 read from T0506.t04.many.frag # found chain 1t77A in template set T0506 175 :SGAEELMAA 1t77A 2398 :KTSEEFVHI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35884 # 1jb0A.175.434 read from T0506.t04.many.frag # found chain 1jb0A in template set T0506 175 :SGAEELMAA 1jb0A 435 :RHRDAIISH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35885 # 1i2tA.175.40 read from T0506.t04.many.frag # found chain 1i2tA in training set T0506 175 :SGAEELMAA 1i2tA 1049 :ASEDSLRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35886 # 1szhA.175.116 read from T0506.t04.many.frag # found chain 1szhA in training set Warning: unaligning (T0506)G176 (1szhA)L132 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1szhA)D133 because D (zeta) conformation "forbidden" or filtered. T0506 175 :S 1szhA 131 :L T0506 178 :EELMAA 1szhA 134 :NVLYKC Number of specific fragments extracted= 2 number of extra gaps= 1 total=35888 # 1j1jA.175.207 read from T0506.t04.many.frag # found chain 1j1jA in template set T0506 175 :SGAEELMAA 1j1jA 196 :DGLKYDVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35889 # 1mk0A.175.65 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 175 :SGAEELMAA 1mk0A 66 :YEKDLIIER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35890 # 2ap3A.175.115 read from T0506.t04.many.frag # found chain 2ap3A in template set T0506 175 :SGAEELMAA 2ap3A 116 :KQLDDVLKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35891 # 1n1bA.175.27 read from T0506.t04.many.frag # found chain 1n1bA in template set Warning: unaligning (T0506)G176 (1n1bA)T78 because G (3-10) conformation "forbidden" or filtered. T0506 175 :S 1n1bA 77 :Y T0506 177 :AEELMAA 1n1bA 79 :EERHLDR Number of specific fragments extracted= 2 number of extra gaps= 1 total=35893 # 1x3mA.175.125 read from T0506.t04.many.frag # found chain 1x3mA in template set T0506 175 :SGAEELMAA 1x3mA 113 :PLAPLHNYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35894 # 1aisB.176.120 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)G176 (1aisB)L1221 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1aisB)S1222 because L (left) conformation "forbidden" or filtered. T0506 178 :EELMAAA 1aisB 1223 :EKVRRRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35895 # 1tljA.176.171 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 176 :GAEELMAAA 1tljA 172 :VCNEVLARG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35896 # 1r5iD.176.108 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 176 :GAEELMAAA 1r5iD 106 :ILDEIMAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35897 # 1io1A.176.364 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 176 :GAEELMAAA 1io1A 417 :QVDTLRSDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35898 # 1ru3A.176.482 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 176 :GAEELMAAA 1ru3A 483 :IARKKYAER Number of specific fragments extracted= 1 number of extra gaps= 0 total=35899 # 1ks8A.176.226 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 176 :GAEELMAAA 1ks8A 227 :NDNTYLNTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35900 # 1ywfA.176.210 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 176 :GAEELMAAA 1ywfA 191 :RSNDSVPQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35901 # 1jfmA.176.144 read from T0506.t04.many.frag # found chain 1jfmA in template set Warning: unaligning (T0506)G176 (1jfmA)D145 because G (3-10) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1jfmA 146 :DGEFVKQL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35902 # 256bA.176.63 read from T0506.t04.many.frag # found chain 256bA in training set Warning: unaligning (T0506)G176 (256bA)G64 because H (helix) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 256bA 65 :FDILVGQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=35903 # 1mj5A.176.215 read from T0506.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0506)A177 (1mj5A)P217 because C (cis) conformation "forbidden" or filtered. T0506 176 :G 1mj5A 216 :T T0506 178 :EELMAAA 1mj5A 218 :ADVVAIA Number of specific fragments extracted= 2 number of extra gaps= 1 total=35905 # 2c5kT.176.46 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 176 :GAEELMAAA 2c5kT 47 :DVEETIVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35906 # 1ydiA.176.167 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 176 :GAEELMAAA 1ydiA 163 :NLGPGMTKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=35907 # 1floA.176.148 read from T0506.t04.many.frag # found chain 1floA in template set T0506 176 :GAEELMAAA 1floA 150 :EGESIWEIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35908 # 1ir6A.176.262 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 176 :GAEELMAAA 1ir6A 302 :ELHRLNARR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35909 # 1orjA.176.108 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 176 :GAEELMAAA 1orjA 1109 :ILKDLREAW Number of specific fragments extracted= 1 number of extra gaps= 0 total=35910 # 1b4fA.176.54 read from T0506.t04.many.frag # found chain 1b4fA in template set T0506 176 :GAEELMAAA 1b4fA 55 :TLAGHQKKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35911 # 1i88A.176.318 read from T0506.t04.many.frag # found chain 1i88A in training set T0506 176 :GAEELMAAA 1i88A 319 :LKPEKMNAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35912 # 1vp6A.176.115 read from T0506.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0506)A177 (1vp6A)S334 because D (zeta) conformation "forbidden" or filtered. T0506 176 :G 1vp6A 333 :S T0506 178 :EELMAAA 1vp6A 335 :PEIAEIF Number of specific fragments extracted= 2 number of extra gaps= 1 total=35914 # 1xl3C.176.36 read from T0506.t04.many.frag # found chain 1xl3C in template set Warning: unaligning (T0506)G176 (1xl3C)T37 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E179 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xl3C)V42 Warning: unaligning (T0506)M181 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xl3C)V42 T0506 177 :AE 1xl3C 38 :PE T0506 182 :AAA 1xl3C 43 :RFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=35916 # 1hlvA.176.47 read from T0506.t04.many.frag # found chain 1hlvA in template set T0506 176 :GAEELMAAA 1hlvA 48 :NKRAILASE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35917 # 1t77A.176.323 read from T0506.t04.many.frag # found chain 1t77A in template set Warning: unaligning (T0506)G176 (1t77A)T2399 because E (beta_S) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1t77A 2400 :SEEFVHIN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35918 # 1n1bA.176.28 read from T0506.t04.many.frag # found chain 1n1bA in template set Warning: unaligning (T0506)G176 (1n1bA)T78 because G (3-10) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1n1bA 79 :EERHLDRK Number of specific fragments extracted= 1 number of extra gaps= 1 total=35919 # 1j1jA.176.208 read from T0506.t04.many.frag # found chain 1j1jA in template set T0506 176 :GAEELMAAA 1j1jA 197 :GLKYDVKKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=35920 # 1c4oA.176.559 read from T0506.t04.many.frag # found chain 1c4oA in template set T0506 176 :GAEELMAAA 1c4oA 561 :ETNRRRALQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35921 # 1jb0A.176.435 read from T0506.t04.many.frag # found chain 1jb0A in template set Warning: unaligning (T0506)G176 (1jb0A)H436 because G (3-10) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1jb0A 437 :RDAIISHL Number of specific fragments extracted= 1 number of extra gaps= 1 total=35922 # 1szhA.176.117 read from T0506.t04.many.frag # found chain 1szhA in training set Warning: unaligning (T0506)G176 (1szhA)L132 because G (3-10) conformation "forbidden" or filtered. T0506 177 :AEELMAAA 1szhA 133 :DNVLYKCF Number of specific fragments extracted= 1 number of extra gaps= 1 total=35923 # 2ap3A.176.116 read from T0506.t04.many.frag # found chain 2ap3A in template set T0506 176 :GAEELMAAA 2ap3A 117 :QLDDVLKEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35924 # 2mhr.176.68 read from T0506.t04.many.frag # found chain 2mhr in training set T0506 176 :GAEELMAAA 2mhr 69 :EVVPHKKMH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35925 # 1umgA.176.312 read from T0506.t04.many.frag # found chain 1umgA in training set T0506 176 :GAEELMAAA 1umgA 315 :AFDETRRLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35926 1kxu expands to /projects/compbio/data/pdb/1kxu.pdb.gz 1kxu:Warning: there is no chain 1kxu will retry with 1kxuA # 1kxu.176.192 read from T0506.t04.many.frag # adding 1kxu to template set # found chain 1kxu in template set Warning: unaligning (T0506)G176 (1kxu)N183 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)A177 (1kxu)P184 because G (3-10) conformation "forbidden" or filtered. T0506 178 :EELMAAA 1kxu 185 :EILRKTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35927 # 1tljA.177.172 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 177 :AEELMAAAE 1tljA 173 :CNEVLARGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35928 # 1aisB.177.121 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)A177 (1aisB)S1222 because L (left) conformation "forbidden" or filtered. T0506 178 :EELMAAAE 1aisB 1223 :EKVRRRAI Number of specific fragments extracted= 1 number of extra gaps= 1 total=35929 # 1ks8A.177.227 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 177 :AEELMAAAE 1ks8A 228 :DNTYLNTAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35930 # 1r5iD.177.109 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 177 :AEELMAAAE 1r5iD 107 :LDEIMAKAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35931 # 1io1A.177.365 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 177 :AEELMAAAE 1io1A 418 :VDTLRSDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35932 # 1mj5A.177.216 read from T0506.t04.many.frag # found chain 1mj5A in training set Warning: unaligning (T0506)A177 (1mj5A)P217 because C (cis) conformation "forbidden" or filtered. T0506 178 :EELMAAAE 1mj5A 218 :ADVVAIAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35933 # 1ru3A.177.483 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 177 :AEELMAAAE 1ru3A 484 :ARKKYAERD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35934 # 1jfmA.177.145 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 177 :AEELMAAAE 1jfmA 146 :DGEFVKQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35935 # 1orjA.177.109 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 177 :AEELMAAAE 1orjA 1110 :LKDLREAWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35936 # 256bA.177.64 read from T0506.t04.many.frag # found chain 256bA in training set T0506 177 :AEELMAAAE 256bA 65 :FDILVGQID Number of specific fragments extracted= 1 number of extra gaps= 0 total=35937 # 1n1bA.177.29 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 177 :AEELMAAAE 1n1bA 79 :EERHLDRKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35938 # 1ywfA.177.211 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 177 :AEELMAAAE 1ywfA 192 :SNDSVPQLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35939 # 1ir6A.177.263 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 177 :AEELMAAAE 1ir6A 303 :LHRLNARRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35940 # 1kxu.177.193 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 177 :AEELMAAAE 1kxu 184 :PEILRKTAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35941 # 2c5kT.177.47 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 177 :AEELMAAAE 2c5kT 48 :VEETIVDLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35942 # 1xfiA.177.72 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 177 :AEELMAAAE 1xfiA 73 :AEKFAERYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35943 # 2mhr.177.69 read from T0506.t04.many.frag # found chain 2mhr in training set T0506 177 :AEELMAAAE 2mhr 70 :VVPHKKMHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35944 # 1ydiA.177.168 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 177 :AEELMAAAE 1ydiA 164 :LGPGMTKMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35945 # 1floA.177.149 read from T0506.t04.many.frag # found chain 1floA in template set T0506 177 :AEELMAAAE 1floA 151 :GESIWEITE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35946 # 1vp6A.177.116 read from T0506.t04.many.frag # found chain 1vp6A in training set Warning: unaligning (T0506)A177 (1vp6A)S334 because D (zeta) conformation "forbidden" or filtered. T0506 178 :EELMAAAE 1vp6A 335 :PEIAEIFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=35947 # 1mk0A.177.67 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 177 :AEELMAAAE 1mk0A 68 :KDLIIERAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35948 # 1p4xA.177.220 read from T0506.t04.many.frag # found chain 1p4xA in template set Warning: unaligning (T0506)A177 (1p4xA)D221 because P (beta_P) conformation "forbidden" or filtered. T0506 178 :EELMAAAE 1p4xA 222 :DAQQDHAE Number of specific fragments extracted= 1 number of extra gaps= 1 total=35949 # 1oohA.177.79 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 177 :AEELMAAAE 1oohA 78 :PPEMMEMSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35950 # 1wbhA.177.197 read from T0506.t04.many.frag # found chain 1wbhA in template set T0506 177 :AEELMAAAE 1wbhA 197 :YDRITKLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35951 # 1b4fA.177.55 read from T0506.t04.many.frag # found chain 1b4fA in template set T0506 177 :AEELMAAAE 1b4fA 56 :LAGHQKKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35952 # 1qlwA.177.261 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 177 :AEELMAAAE 1qlwA 262 :WAPRLKACH Number of specific fragments extracted= 1 number of extra gaps= 0 total=35953 # 1cc8A.177.14 read from T0506.t04.many.frag # found chain 1cc8A in training set Warning: unaligning (T0506)A177 (1cc8A)C15 because Y (epsilon') conformation "forbidden" or filtered. T0506 178 :EELMAAAE 1cc8A 16 :SGCSGAVN Number of specific fragments extracted= 1 number of extra gaps= 1 total=35954 # 1uwkA.177.291 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 177 :AEELMAAAE 1uwkA 292 :PAAVVKAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35955 # 1i88A.177.319 read from T0506.t04.many.frag # found chain 1i88A in training set T0506 177 :AEELMAAAE 1i88A 320 :KPEKMNATR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35956 # 1k2xA.177.30 read from T0506.t04.many.frag # found chain 1k2xA in training set T0506 177 :AEELMAAAE 1k2xA 32 :LSAIVETGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35957 # 1tljA.178.173 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 178 :EELMAAAES 1tljA 174 :NEVLARGKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35958 # 1aisB.178.122 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 178 :EELMAAAES 1aisB 1223 :EKVRRRAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35959 # 1ks8A.178.228 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 178 :EELMAAAES 1ks8A 229 :NTYLNTAES Number of specific fragments extracted= 1 number of extra gaps= 0 total=35960 # 1r5iD.178.110 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 178 :EELMAAAES 1r5iD 108 :DEIMAKADN Number of specific fragments extracted= 1 number of extra gaps= 0 total=35961 # 1mj5A.178.217 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 178 :EELMAAAES 1mj5A 218 :ADVVAIARD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35962 # 1n1bA.178.30 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 178 :EELMAAAES 1n1bA 80 :ERHLDRKAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35963 # 1kxu.178.194 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 178 :EELMAAAES 1kxu 185 :EILRKTADD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35964 # 1ir6A.178.264 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 178 :EELMAAAES 1ir6A 304 :HRLNARRQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=35965 # 1ru3A.178.484 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 178 :EELMAAAES 1ru3A 485 :RKKYAERDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35966 # 1oohA.178.80 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 178 :EELMAAAES 1oohA 79 :PEMMEMSRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35967 # 2mhr.178.70 read from T0506.t04.many.frag # found chain 2mhr in training set T0506 178 :EELMAAAES 2mhr 71 :VPHKKMHKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35968 # 1ywfA.178.212 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 178 :EELMAAAES 1ywfA 193 :NDSVPQLRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35969 # 1io1A.178.366 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 178 :EELMAAAES 1io1A 419 :DTLRSDLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35970 # 1p4xA.178.221 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 178 :EELMAAAES 1p4xA 222 :DAQQDHAEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35971 # 1ydiA.178.169 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 178 :EELMAAAES 1ydiA 165 :GPGMTKMAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35972 # 1mk0A.178.68 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 178 :EELMAAAES 1mk0A 69 :DLIIERANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35973 # 1jfmA.178.146 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 178 :EELMAAAES 1jfmA 147 :GEFVKQLKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35974 # 1km4A.178.208 read from T0506.t04.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)E179 (1km4A)N210 because D (zeta) conformation "forbidden" or filtered. T0506 178 :E 1km4A 209 :D T0506 180 :LMAAAES 1km4A 211 :PAAAAAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=35976 # 1xfiA.178.73 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 178 :EELMAAAES 1xfiA 74 :EKFAERYAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=35977 # 1wbhA.178.198 read from T0506.t04.many.frag # found chain 1wbhA in template set T0506 178 :EELMAAAES 1wbhA 198 :DRITKLARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35978 # 1qlwA.178.262 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 178 :EELMAAAES 1qlwA 263 :APRLKACHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35979 # 2c5kT.178.48 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 178 :EELMAAAES 2c5kT 49 :EETIVDLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=35980 # 1uwkA.178.292 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 178 :EELMAAAES 1uwkA 293 :AAVVKAAKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=35981 # 1cc8A.178.15 read from T0506.t04.many.frag # found chain 1cc8A in training set T0506 178 :EELMAAAES 1cc8A 16 :SGCSGAVNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35982 # 1k2xA.178.31 read from T0506.t04.many.frag # found chain 1k2xA in training set T0506 178 :EELMAAAES 1k2xA 33 :SAIVETGQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35983 # 1floA.178.150 read from T0506.t04.many.frag # found chain 1floA in template set T0506 178 :EELMAAAES 1floA 152 :ESIWEITEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35984 # 256bA.178.65 read from T0506.t04.many.frag # found chain 256bA in training set T0506 178 :EELMAAAES 256bA 66 :DILVGQIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=35985 # 1orjA.178.110 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 178 :EELMAAAES 1orjA 1111 :KDLREAWEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=35986 # 1zz1A.178.347 read from T0506.t04.many.frag # found chain 1zz1A in template set T0506 178 :EELMAAAES 1zz1A 348 :NTLLDAERA Number of specific fragments extracted= 1 number of extra gaps= 0 total=35987 # 2ap3A.178.118 read from T0506.t04.many.frag # found chain 2ap3A in template set T0506 178 :EELMAAAES 2ap3A 119 :DDVLKEKYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35988 # 1tljA.179.174 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 179 :ELMAAAESE 1tljA 175 :EVLARGKQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=35989 # 1aisB.179.123 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 179 :ELMAAAESE 1aisB 1224 :KVRRRAIEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=35990 # 1ks8A.179.229 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 179 :ELMAAAESE 1ks8A 230 :TYLNTAESL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35991 # 1mj5A.179.218 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 179 :ELMAAAESE 1mj5A 219 :DVVAIARDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=35992 # 1r5iD.179.111 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 179 :ELMAAAESE 1r5iD 109 :EIMAKADND Number of specific fragments extracted= 1 number of extra gaps= 0 total=35993 # 1kxu.179.195 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 179 :ELMAAAESE 1kxu 186 :ILRKTADDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=35994 # 1zz1A.179.348 read from T0506.t04.many.frag # found chain 1zz1A in template set Warning: unaligning (T0506)E179 (1zz1A)T349 because E (beta_S) conformation "forbidden" or filtered. T0506 180 :LMAAAESE 1zz1A 350 :LLDAERAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=35995 # 1ir6A.179.265 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 179 :ELMAAAESE 1ir6A 305 :RLNARRQTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35996 # 1km4A.179.209 read from T0506.t04.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)E179 (1km4A)N210 because D (zeta) conformation "forbidden" or filtered. T0506 180 :LMAAAESE 1km4A 211 :PAAAAAGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=35997 # 1n1bA.179.31 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 179 :ELMAAAESE 1n1bA 81 :RHLDRKAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35998 # 1jfmA.179.147 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 179 :ELMAAAESE 1jfmA 148 :EFVKQLKFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=35999 # 1wbhA.179.199 read from T0506.t04.many.frag # found chain 1wbhA in template set T0506 179 :ELMAAAESE 1wbhA 199 :RITKLAREA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36000 # 1oohA.179.81 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 179 :ELMAAAESE 1oohA 80 :EMMEMSRKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36001 # 1xfiA.179.74 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 179 :ELMAAAESE 1xfiA 75 :KFAERYAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36002 # 1uwkA.179.293 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 179 :ELMAAAESE 1uwkA 294 :AVVKAAKQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36003 # 1ydiA.179.170 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 179 :ELMAAAESE 1ydiA 166 :PGMTKMAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36004 # 1k2xA.179.32 read from T0506.t04.many.frag # found chain 1k2xA in training set T0506 179 :ELMAAAESE 1k2xA 34 :AIVETGQKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36005 # 1qlwA.179.263 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 179 :ELMAAAESE 1qlwA 264 :PRLKACHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36006 # 1t0qB.179.279 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 179 :ELMAAAESE 1t0qB 280 :GNREVLQKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36007 # 1io1A.179.367 read from T0506.t04.many.frag # found chain 1io1A in template set T0506 179 :ELMAAAESE 1io1A 420 :TLRSDLAAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36008 # 256bA.179.66 read from T0506.t04.many.frag # found chain 256bA in training set T0506 179 :ELMAAAESE 256bA 67 :ILVGQIDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36009 # 2mhr.179.71 read from T0506.t04.many.frag # found chain 2mhr in training set T0506 179 :ELMAAAESE 2mhr 72 :PHKKMHKDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36010 # 2c5kT.179.49 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 179 :ELMAAAESE 2c5kT 50 :ETIVDLDRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36011 # 1mk0A.179.69 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 179 :ELMAAAESE 1mk0A 70 :LIIERANFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36012 # 1p4xA.179.222 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 179 :ELMAAAESE 1p4xA 223 :AQQDHAEQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36013 # 1orjA.179.111 read from T0506.t04.many.frag # found chain 1orjA in template set T0506 179 :ELMAAAESE 1orjA 1112 :DLREAWEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36014 # 1ywfA.179.213 read from T0506.t04.many.frag # found chain 1ywfA in template set T0506 179 :ELMAAAESE 1ywfA 194 :DSVPQLRAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36015 # 1cc8A.179.16 read from T0506.t04.many.frag # found chain 1cc8A in training set T0506 179 :ELMAAAESE 1cc8A 17 :GCSGAVNKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36016 # 1ru3A.179.485 read from T0506.t04.many.frag # found chain 1ru3A in template set T0506 179 :ELMAAAESE 1ru3A 486 :KKYAERDAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36017 # 1iq4A.179.47 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 179 :ELMAAAESE 1iq4A 48 :KALDSAVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36018 # 1mj5A.180.219 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 180 :LMAAAESEA 1mj5A 220 :VVAIARDYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36019 # 1ks8A.180.230 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 180 :LMAAAESEA 1ks8A 231 :YLNTAESLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36020 # 1tljA.180.175 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 180 :LMAAAESEA 1tljA 176 :VLARGKQKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36021 # 1aisB.180.124 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 180 :LMAAAESEA 1aisB 1225 :VRRRAIEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36022 # 1oohA.180.82 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 180 :LMAAAESEA 1oohA 81 :MMEMSRKSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36023 # 1t0qB.180.280 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 180 :LMAAAESEA 1t0qB 281 :NREVLQKWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36024 # 1kxu.180.196 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 180 :LMAAAESEA 1kxu 187 :LRKTADDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36025 # 1n1bA.180.32 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 180 :LMAAAESEA 1n1bA 82 :HLDRKAELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36026 # 1wbhA.180.200 read from T0506.t04.many.frag # found chain 1wbhA in template set T0506 180 :LMAAAESEA 1wbhA 200 :ITKLAREAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36027 # 1xfiA.180.75 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 180 :LMAAAESEA 1xfiA 76 :FAERYAGIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36028 # 1k2xA.180.33 read from T0506.t04.many.frag # found chain 1k2xA in training set T0506 180 :LMAAAESEA 1k2xA 35 :IVETGQKML Number of specific fragments extracted= 1 number of extra gaps= 0 total=36029 # 2mhr.180.72 read from T0506.t04.many.frag # found chain 2mhr in training set T0506 180 :LMAAAESEA 2mhr 73 :HKKMHKDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36030 # 1uwkA.180.294 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 180 :LMAAAESEA 1uwkA 295 :VVKAAKQSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36031 # 1jfmA.180.148 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 180 :LMAAAESEA 1jfmA 149 :FVKQLKFLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36032 # 1ir6A.180.266 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 180 :LMAAAESEA 1ir6A 306 :LNARRQTLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36033 # 1km4A.180.210 read from T0506.t04.many.frag # found chain 1km4A in training set T0506 180 :LMAAAESEA 1km4A 211 :PAAAAAGII Number of specific fragments extracted= 1 number of extra gaps= 0 total=36034 # 1r5iD.180.112 read from T0506.t04.many.frag # found chain 1r5iD in template set T0506 180 :LMAAAESEA 1r5iD 110 :IMAKADNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36035 # 1p4xA.180.223 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 180 :LMAAAESEA 1p4xA 224 :QQDHAEQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36036 # 1qlwA.180.264 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 180 :LMAAAESEA 1qlwA 265 :RLKACHAFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36037 # 1mk0A.180.70 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 180 :LMAAAESEA 1mk0A 71 :IIERANFWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36038 # 1zz1A.180.349 read from T0506.t04.many.frag # found chain 1zz1A in template set T0506 180 :LMAAAESEA 1zz1A 350 :LLDAERAAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36039 # 1epuA.180.344 read from T0506.t04.many.frag # found chain 1epuA in template set T0506 180 :LMAAAESEA 1epuA 345 :HLHLAEDCM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36040 # 1iq4A.180.48 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 180 :LMAAAESEA 1iq4A 49 :ALDSAVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36041 # 1ku3A.180.46 read from T0506.t04.many.frag # found chain 1ku3A in training set T0506 180 :LMAAAESEA 1ku3A 412 :IRQIENKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36042 # 1cc8A.180.17 read from T0506.t04.many.frag # found chain 1cc8A in training set T0506 180 :LMAAAESEA 1cc8A 18 :CSGAVNKVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36043 # 1nu0A.180.71 read from T0506.t04.many.frag # found chain 1nu0A in training set T0506 180 :LMAAAESEA 1nu0A 72 :LTARARKFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36044 # 1w9hA.180.263 read from T0506.t04.many.frag # found chain 1w9hA in template set T0506 180 :LMAAAESEA 1w9hA 264 :ETKILKETV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36045 # 1jb0A.180.439 read from T0506.t04.many.frag # found chain 1jb0A in template set T0506 180 :LMAAAESEA 1jb0A 440 :IISHLNWVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36046 # 1r2qA.180.92 read from T0506.t04.many.frag # found chain 1r2qA in training set T0506 180 :LMAAAESEA 1r2qA 107 :SFARAKNWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36047 # 1hz4A.180.153 read from T0506.t04.many.frag # found chain 1hz4A in training set T0506 180 :LMAAAESEA 1hz4A 152 :AEASARSGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36048 # 1t0qB.181.281 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 181 :MAAAESEAT 1t0qB 282 :REVLQKWVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36049 # 1ks8A.181.231 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 181 :MAAAESEAT 1ks8A 232 :LNTAESLYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36050 # 1tljA.181.176 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 181 :MAAAESEAT 1tljA 177 :LARGKQKMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36051 # 1aisB.181.125 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 181 :MAAAESEAT 1aisB 1226 :RRRAIEILD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36052 # 1mj5A.181.220 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 181 :MAAAESEAT 1mj5A 221 :VAIARDYAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36053 # 1kxu.181.197 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 181 :MAAAESEAT 1kxu 188 :RKTADDFLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36054 # 1xfiA.181.76 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 181 :MAAAESEAT 1xfiA 77 :AERYAGILE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36055 # 1oohA.181.83 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 181 :MAAAESEAT 1oohA 82 :MEMSRKSVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36056 # 1jfmA.181.149 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 181 :MAAAESEAT 1jfmA 150 :VKQLKFLIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36057 # 1zz1A.181.350 read from T0506.t04.many.frag # found chain 1zz1A in template set T0506 181 :MAAAESEAT 1zz1A 351 :LDAERAAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36058 # 1uwkA.181.295 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 181 :MAAAESEAT 1uwkA 296 :VKAAKQSMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36059 # 1n1bA.181.33 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 181 :MAAAESEAT 1n1bA 83 :LDRKAELIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36060 # 1qlwA.181.265 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 181 :MAAAESEAT 1qlwA 266 :LKACHAFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=36061 # 1r2qA.181.93 read from T0506.t04.many.frag # found chain 1r2qA in training set T0506 181 :MAAAESEAT 1r2qA 108 :FARAKNWVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36062 # 1nnlA.181.87 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 181 :MAAAESEAT 1nnlA 88 :TPGIRELVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36063 # 2c5kT.181.51 read from T0506.t04.many.frag # found chain 2c5kT in template set T0506 181 :MAAAESEAT 2c5kT 52 :IVDLDRSII Number of specific fragments extracted= 1 number of extra gaps= 0 total=36064 # 1cc8A.181.18 read from T0506.t04.many.frag # found chain 1cc8A in training set T0506 181 :MAAAESEAT 1cc8A 19 :SGAVNKVLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36065 # 1iq4A.181.49 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 181 :MAAAESEAT 1iq4A 50 :LDSAVEELT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36066 # 1nu0A.181.72 read from T0506.t04.many.frag # found chain 1nu0A in training set T0506 181 :MAAAESEAT 1nu0A 73 :TARARKFAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36067 # 1k2xA.181.34 read from T0506.t04.many.frag # found chain 1k2xA in training set T0506 181 :MAAAESEAT 1k2xA 36 :VETGQKMLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36068 # 1ir6A.181.267 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 181 :MAAAESEAT 1ir6A 307 :NARRQTLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36069 # 1mk0A.181.71 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 181 :MAAAESEAT 1mk0A 72 :IERANFWIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36070 # 1km4A.181.211 read from T0506.t04.many.frag # found chain 1km4A in training set T0506 181 :MAAAESEAT 1km4A 212 :AAAAAGIIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36071 # 1p4xA.181.224 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 181 :MAAAESEAT 1p4xA 225 :QDHAEQLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36072 # 1ydiA.181.172 read from T0506.t04.many.frag # found chain 1ydiA in template set T0506 181 :MAAAESEAT 1ydiA 168 :MTKMAKMID Number of specific fragments extracted= 1 number of extra gaps= 0 total=36073 # 1wbhA.181.201 read from T0506.t04.many.frag # found chain 1wbhA in template set T0506 181 :MAAAESEAT 1wbhA 201 :TKLAREAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36074 # 2b0tA.181.676 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 181 :MAAAESEAT 2b0tA 677 :AATFAPVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36075 # 1oaiA.181.35 read from T0506.t04.many.frag # found chain 1oaiA in training set T0506 181 :MAAAESEAT 1oaiA 596 :YTRSAQAFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36076 2cwyA expands to /projects/compbio/data/pdb/2cwy.pdb.gz 2cwyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2cwyA.181.20 read from T0506.t04.many.frag # adding 2cwyA to template set # found chain 2cwyA in template set T0506 181 :MAAAESEAT 2cwyA 21 :HEVLEPYWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36077 # 2mhr.181.73 read from T0506.t04.many.frag # found chain 2mhr in training set T0506 181 :MAAAESEAT 2mhr 74 :KKMHKDFLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36078 # 1t0qB.182.282 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 182 :AAAESEATR 1t0qB 283 :EVLQKWVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36079 # 1aisB.182.126 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 182 :AAAESEATR 1aisB 1227 :RRAIEILDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36080 # 1ks8A.182.232 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 182 :AAAESEATR 1ks8A 233 :NTAESLYDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36081 # 1mj5A.182.221 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 182 :AAAESEATR 1mj5A 222 :AIARDYAGW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36082 # 1kxu.182.198 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 182 :AAAESEATR 1kxu 189 :KTADDFLNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36083 # 1xfiA.182.77 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 182 :AAAESEATR 1xfiA 78 :ERYAGILED Number of specific fragments extracted= 1 number of extra gaps= 0 total=36084 # 1tljA.182.177 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 182 :AAAESEATR 1tljA 178 :ARGKQKMNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36085 # 1qlwA.182.266 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 182 :AAAESEATR 1qlwA 267 :KACHAFIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36086 # 1oohA.182.84 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 182 :AAAESEATR 1oohA 83 :EMSRKSVEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36087 # 1n1bA.182.34 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 182 :AAAESEATR 1n1bA 84 :DRKAELIVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36088 # 1jfmA.182.150 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 182 :AAAESEATR 1jfmA 151 :KQLKFLIHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36089 # 1r2qA.182.94 read from T0506.t04.many.frag # found chain 1r2qA in training set T0506 182 :AAAESEATR 1r2qA 109 :ARAKNWVKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36090 # 1zz1A.182.351 read from T0506.t04.many.frag # found chain 1zz1A in template set T0506 182 :AAAESEATR 1zz1A 352 :DAERAAIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36091 # 1bf5A.182.146 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 182 :AAAESEATR 1bf5A 296 :KNKQVLWDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36092 # 1k2xA.182.35 read from T0506.t04.many.frag # found chain 1k2xA in training set T0506 182 :AAAESEATR 1k2xA 37 :ETGQKMLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36093 # 1uwkA.182.296 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 182 :AAAESEATR 1uwkA 297 :KAAKQSMAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36094 # 1oaiA.182.36 read from T0506.t04.many.frag # found chain 1oaiA in training set T0506 182 :AAAESEATR 1oaiA 597 :TRSAQAFTH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36095 # 1nnlA.182.88 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 182 :AAAESEATR 1nnlA 89 :PGIRELVSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36096 # 1m1nB.182.344 read from T0506.t04.many.frag # found chain 1m1nB in training set T0506 182 :AAAESEATR 1m1nB 346 :KERGRLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36097 # 2b0tA.182.677 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 182 :AAAESEATR 2b0tA 678 :ATFAPVAEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36098 # 1mk0A.182.72 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 182 :AAAESEATR 1mk0A 73 :ERANFWIKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36099 # 1nu0A.182.73 read from T0506.t04.many.frag # found chain 1nu0A in training set T0506 182 :AAAESEATR 1nu0A 74 :ARARKFANR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36100 # 1cc8A.182.19 read from T0506.t04.many.frag # found chain 1cc8A in training set T0506 182 :AAAESEATR 1cc8A 20 :GAVNKVLTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36101 # 1iq4A.182.50 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 182 :AAAESEATR 1iq4A 51 :DSAVEELTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36102 # 1lb3A.182.96 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 182 :AAAESEATR 1lb3A 101 :EAALAMEKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36103 # 1p4xA.182.225 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 182 :AAAESEATR 1p4xA 226 :DHAEQLLAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36104 # 1wbhA.182.202 read from T0506.t04.many.frag # found chain 1wbhA in template set T0506 182 :AAAESEATR 1wbhA 202 :KLAREAVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36105 # 1w9hA.182.265 read from T0506.t04.many.frag # found chain 1w9hA in template set T0506 182 :AAAESEATR 1w9hA 266 :KILKETVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36106 # 1km4A.182.212 read from T0506.t04.many.frag # found chain 1km4A in training set T0506 182 :AAAESEATR 1km4A 213 :AAAAGIIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=36107 # 1ir6A.182.268 read from T0506.t04.many.frag # found chain 1ir6A in template set T0506 182 :AAAESEATR 1ir6A 308 :ARRQTLEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36108 # 1t0qB.183.283 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 183 :AAESEATRL 1t0qB 284 :VLQKWVAKW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36109 # 1aisB.183.127 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 183 :AAESEATRL 1aisB 1228 :RAIEILDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36110 # 1xfiA.183.78 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 183 :AAESEATRL 1xfiA 79 :RYAGILEDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36111 # 1qlwA.183.267 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 183 :AAESEATRL 1qlwA 268 :ACHAFIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36112 # 1mj5A.183.222 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 183 :AAESEATRL 1mj5A 223 :IARDYAGWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36113 # 1ks8A.183.233 read from T0506.t04.many.frag # found chain 1ks8A in training set T0506 183 :AAESEATRL 1ks8A 234 :TAESLYDEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36114 # 1kxu.183.199 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 183 :AAESEATRL 1kxu 190 :TADDFLNRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36115 # 1nnlA.183.89 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 183 :AAESEATRL 1nnlA 90 :GIRELVSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36116 # 1oohA.183.85 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 183 :AAESEATRL 1oohA 84 :MSRKSVEAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36117 # 1r2qA.183.95 read from T0506.t04.many.frag # found chain 1r2qA in training set T0506 183 :AAESEATRL 1r2qA 110 :RAKNWVKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36118 # 1jfmA.183.151 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 183 :AAESEATRL 1jfmA 152 :QLKFLIHEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36119 # 1iq4A.183.51 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 183 :AAESEATRL 1iq4A 52 :SAVEELTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36120 # 1n1bA.183.35 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 183 :AAESEATRL 1n1bA 85 :RKAELIVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36121 # 1tljA.183.178 read from T0506.t04.many.frag # found chain 1tljA in template set T0506 183 :AAESEATRL 1tljA 179 :RGKQKMNLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36122 # 1oaiA.183.37 read from T0506.t04.many.frag # found chain 1oaiA in training set T0506 183 :AAESEATRL 1oaiA 598 :RSAQAFTHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36123 # 1lb3A.183.97 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 183 :AAESEATRL 1lb3A 102 :AALAMEKNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36124 # 1cc8A.183.20 read from T0506.t04.many.frag # found chain 1cc8A in training set T0506 183 :AAESEATRL 1cc8A 21 :AVNKVLTKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36125 # 1uwkA.183.297 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 183 :AAESEATRL 1uwkA 298 :AAKQSMAVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36126 # 1zz1A.183.352 read from T0506.t04.many.frag # found chain 1zz1A in template set T0506 183 :AAESEATRL 1zz1A 353 :AERAAIEEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36127 # 1ss9A.183.171 read from T0506.t04.many.frag # found chain 1ss9A in template set T0506 183 :AAESEATRL 1ss9A 172 :MSCEWVEQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36128 1zi8A expands to /projects/compbio/data/pdb/1zi8.pdb.gz 1zi8A:# 1zi8A.183.82 read from T0506.t04.many.frag # adding 1zi8A to template set # found chain 1zi8A in template set T0506 183 :AAESEATRL 1zi8A 83 :QAYKLWQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36129 # 1mk0A.183.73 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 183 :AAESEATRL 1mk0A 74 :RANFWIKEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36130 # 1ajsA.183.317 read from T0506.t04.many.frag # found chain 1ajsA in training set T0506 183 :AAESEATRL 1ajsA 318 :EWTGNVKTM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36131 # 2b0tA.183.678 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 183 :AAESEATRL 2b0tA 679 :TFAPVAEAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36132 # 1bf5A.183.147 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 183 :AAESEATRL 1bf5A 297 :NKQVLWDRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36133 1izmA expands to /projects/compbio/data/pdb/1izm.pdb.gz 1izmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1izmA.183.152 read from T0506.t04.many.frag # adding 1izmA to template set # found chain 1izmA in template set T0506 183 :AAESEATRL 1izmA 151 :ALEEIIEYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36134 2a6sA expands to /projects/compbio/data/pdb/2a6s.pdb.gz 2a6sA:# 2a6sA.183.25 read from T0506.t04.many.frag # adding 2a6sA to template set # found chain 2a6sA in template set T0506 183 :AAESEATRL 2a6sA 26 :KINELIKDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36135 # 1k2xA.183.36 read from T0506.t04.many.frag # found chain 1k2xA in training set Warning: unaligning (T0506)L191 (1k2xA)G46 because T (delta_L) conformation "forbidden" or filtered. T0506 183 :AAESEATR 1k2xA 38 :TGQKMLEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36136 # 1m1nB.183.345 read from T0506.t04.many.frag # found chain 1m1nB in training set T0506 183 :AAESEATRL 1m1nB 347 :ERGRLVDMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36137 # 1km4A.183.213 read from T0506.t04.many.frag # found chain 1km4A in training set Warning: unaligning (T0506)L191 because last residue in template chain is (1km4A)I222 T0506 183 :AAESEATR 1km4A 214 :AAAGIIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=36138 # 1t0qB.184.284 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 184 :AESEATRLN 1t0qB 285 :LQKWVAKWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36139 # 1aisB.184.128 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 184 :AESEATRLN 1aisB 1229 :AIEILDEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36140 # 1xfiA.184.79 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 184 :AESEATRLN 1xfiA 80 :YAGILEDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36141 # 1bf5A.184.148 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 184 :AESEATRLN 1bf5A 298 :KQVLWDRTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36142 # 1lb3A.184.98 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 184 :AESEATRLN 1lb3A 103 :ALAMEKNLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36143 # 1nnlA.184.90 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 184 :AESEATRLN 1nnlA 91 :IRELVSRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36144 # 1qlwA.184.268 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 184 :AESEATRLN 1qlwA 269 :CHAFIDALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36145 # 1r2qA.184.96 read from T0506.t04.many.frag # found chain 1r2qA in training set T0506 184 :AESEATRLN 1r2qA 111 :AKNWVKELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36146 # 1jfmA.184.152 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 184 :AESEATRLN 1jfmA 153 :LKFLIHECS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36147 # 1ss9A.184.172 read from T0506.t04.many.frag # found chain 1ss9A in template set T0506 184 :AESEATRLN 1ss9A 173 :SCEWVEQYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36148 # 1izmA.184.153 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 184 :AESEATRLN 1izmA 152 :LEEIIEYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36149 # 1kxu.184.200 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 184 :AESEATRLN 1kxu 191 :ADDFLNRIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36150 # 1mj5A.184.223 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 184 :AESEATRLN 1mj5A 224 :ARDYAGWLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36151 # 2b0tA.184.679 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 184 :AESEATRLN 2b0tA 680 :FAPVAEALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36152 # 1mk0A.184.74 read from T0506.t04.many.frag # found chain 1mk0A in training set Warning: unaligning (T0506)N192 (1mk0A)N83 because L (left) conformation "forbidden" or filtered. T0506 184 :AESEATRL 1mk0A 75 :ANFWIKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36153 # 1jpzA.184.207 read from T0506.t04.many.frag # found chain 1jpzA in training set T0506 184 :AESEATRLN 1jpzA 205 :FQEDIKVMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36154 # 1w9hA.184.267 read from T0506.t04.many.frag # found chain 1w9hA in template set T0506 184 :AESEATRLN 1w9hA 268 :LKETVEELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36155 # 1uzbA.184.101 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 184 :AESEATRLN 1uzbA 102 :LLKAAALMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36156 # 1p4xA.184.227 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 184 :AESEATRLN 1p4xA 228 :AEQLLAQVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36157 # 1oohA.184.86 read from T0506.t04.many.frag # found chain 1oohA in training set T0506 184 :AESEATRLN 1oohA 85 :SRKSVEACR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36158 # 1nar.184.143 read from T0506.t04.many.frag # found chain 1nar in training set T0506 184 :AESEATRLN 1nar 144 :MGQLITELK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36159 # 1iq4A.184.52 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 184 :AESEATRLN 1iq4A 53 :AVEELTLIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36160 # 1m1nB.184.346 read from T0506.t04.many.frag # found chain 1m1nB in training set T0506 184 :AESEATRLN 1m1nB 348 :RGRLVDMMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36161 # 2ae5B.184.391 read from T0506.t04.many.frag # found chain 2ae5B in template set T0506 184 :AESEATRLN 2ae5B 392 :LRTAIANTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36162 # 1ks8A.184.234 read from T0506.t04.many.frag # found chain 1ks8A in training set Warning: unaligning (T0506)N192 (1ks8A)G243 because L (left) conformation "forbidden" or filtered. T0506 184 :AESEATRL 1ks8A 235 :AESLYDEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=36163 # 1k8kD.184.177 read from T0506.t04.many.frag # found chain 1k8kD in template set T0506 184 :AESEATRLN 1k8kD 178 :GKVFMQEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36164 # 1n1bA.184.36 read from T0506.t04.many.frag # found chain 1n1bA in template set T0506 184 :AESEATRLN 1n1bA 86 :KAELIVQVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36165 # 1qo7A.184.256 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 184 :AESEATRLN 1qo7A 259 :PSTIGHVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36166 # 1cc8A.184.21 read from T0506.t04.many.frag # found chain 1cc8A in training set T0506 184 :AESEATRLN 1cc8A 22 :VNKVLTKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36167 1vbkA expands to /projects/compbio/data/pdb/1vbk.pdb.gz 1vbkA:# 1vbkA.184.219 read from T0506.t04.many.frag # adding 1vbkA to template set # found chain 1vbkA in template set T0506 184 :AESEATRLN 1vbkA 220 :VRSLWNLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36168 # 1t0qB.185.285 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 185 :ESEATRLNA 1t0qB 286 :QKWVAKWEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36169 # 1aisB.185.129 read from T0506.t04.many.frag # found chain 1aisB in template set T0506 185 :ESEATRLNA 1aisB 1230 :IEILDEAYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36170 # 1xfiA.185.80 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 185 :ESEATRLNA 1xfiA 81 :AGILEDLKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36171 # 1bf5A.185.149 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 185 :ESEATRLNA 1bf5A 299 :QVLWDRTFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36172 # 1nnlA.185.91 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 185 :ESEATRLNA 1nnlA 92 :RELVSRLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36173 # 1lb3A.185.99 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 185 :ESEATRLNA 1lb3A 104 :LAMEKNLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36174 # 1uzbA.185.102 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 185 :ESEATRLNA 1uzbA 103 :LKAAALMRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36175 # 1qlwA.185.269 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 185 :ESEATRLNA 1qlwA 270 :HAFIDALNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36176 # 1ss9A.185.173 read from T0506.t04.many.frag # found chain 1ss9A in template set T0506 185 :ESEATRLNA 1ss9A 174 :CEWVEQYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36177 # 1kxu.185.201 read from T0506.t04.many.frag # found chain 1kxu in template set T0506 185 :ESEATRLNA 1kxu 192 :DDFLNRIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36178 # 1w9hA.185.268 read from T0506.t04.many.frag # found chain 1w9hA in template set T0506 185 :ESEATRLNA 1w9hA 269 :KETVEELKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36179 # 1p4xA.185.228 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 185 :ESEATRLNA 1p4xA 229 :EQLLAQVNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36180 # 2b0tA.185.680 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 185 :ESEATRLNA 2b0tA 681 :APVAEALNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36181 # 1mj5A.185.224 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 185 :ESEATRLNA 1mj5A 225 :RDYAGWLSE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36182 # 1mk0A.185.75 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 185 :ESEATRLNA 1mk0A 76 :NFWIKELNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36183 # 1nar.185.144 read from T0506.t04.many.frag # found chain 1nar in training set T0506 185 :ESEATRLNA 1nar 145 :GQLITELKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36184 # 2ae5B.185.392 read from T0506.t04.many.frag # found chain 2ae5B in template set T0506 185 :ESEATRLNA 2ae5B 393 :RTAIANTKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36185 # 1ajsA.185.319 read from T0506.t04.many.frag # found chain 1ajsA in training set T0506 185 :ESEATRLNA 1ajsA 320 :TGNVKTMAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36186 # 1k8kD.185.178 read from T0506.t04.many.frag # found chain 1k8kD in template set T0506 185 :ESEATRLNA 1k8kD 179 :KVFMQEFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36187 # 1iq4A.185.53 read from T0506.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0506)N192 (1iq4A)A61 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A193 (1iq4A)G62 because L (left) conformation "forbidden" or filtered. T0506 185 :ESEATRL 1iq4A 54 :VEELTLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36188 # 1izmA.185.154 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 185 :ESEATRLNA 1izmA 153 :EEIIEYVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36189 # 1r2qA.185.97 read from T0506.t04.many.frag # found chain 1r2qA in training set T0506 185 :ESEATRLNA 1r2qA 112 :KNWVKELQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36190 # 1oaiA.185.39 read from T0506.t04.many.frag # found chain 1oaiA in training set T0506 185 :ESEATRLNA 1oaiA 600 :AQAFTHLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36191 # 1wleA.185.347 read from T0506.t04.many.frag # found chain 1wleA in template set T0506 185 :ESEATRLNA 1wleA 348 :SELLEEFLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36192 # 1jfmA.185.153 read from T0506.t04.many.frag # found chain 1jfmA in template set T0506 185 :ESEATRLNA 1jfmA 154 :KFLIHECSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36193 # 1hs6A.185.585 read from T0506.t04.many.frag # found chain 1hs6A in template set T0506 185 :ESEATRLNA 1hs6A 585 :VRTYQEHKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36194 # 1jpzA.185.208 read from T0506.t04.many.frag # found chain 1jpzA in training set T0506 185 :ESEATRLNA 1jpzA 206 :QEDIKVMND Number of specific fragments extracted= 1 number of extra gaps= 0 total=36195 # 1vbkA.185.220 read from T0506.t04.many.frag # found chain 1vbkA in template set T0506 185 :ESEATRLNA 1vbkA 221 :RSLWNLLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36196 # 1cc8A.185.22 read from T0506.t04.many.frag # found chain 1cc8A in training set Warning: unaligning (T0506)N192 (1cc8A)E30 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A193 (1cc8A)P31 because C (cis) conformation "forbidden" or filtered. T0506 185 :ESEATRL 1cc8A 23 :NKVLTKL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36197 # 1qo7A.185.257 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 185 :ESEATRLNA 1qo7A 260 :STIGHVLSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36198 # 1t0qB.186.286 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 186 :SEATRLNAI 1t0qB 287 :KWVAKWEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36199 # 1aisB.186.130 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)I194 (1aisB)R1239 because G (3-10) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1aisB 1231 :EILDEAYK Number of specific fragments extracted= 1 number of extra gaps= 1 total=36200 # 1uzbA.186.103 read from T0506.t04.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)I194 (1uzbA)R112 because G (3-10) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1uzbA 104 :KAAALMRR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36201 # 1bf5A.186.150 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 186 :SEATRLNAI 1bf5A 300 :VLWDRTFSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36202 # 1nnlA.186.92 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 186 :SEATRLNAI 1nnlA 93 :ELVSRLQER Number of specific fragments extracted= 1 number of extra gaps= 0 total=36203 # 1xfiA.186.81 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 186 :SEATRLNAI 1xfiA 82 :GILEDLKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36204 # 1lb3A.186.100 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 186 :SEATRLNAI 1lb3A 105 :AMEKNLNQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36205 # 1qlwA.186.270 read from T0506.t04.many.frag # found chain 1qlwA in training set T0506 186 :SEATRLNAI 1qlwA 271 :AFIDALNAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36206 # 1izmA.186.155 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 186 :SEATRLNAI 1izmA 154 :EIIEYVRTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36207 # 1ajsA.186.320 read from T0506.t04.many.frag # found chain 1ajsA in training set T0506 186 :SEATRLNAI 1ajsA 321 :GNVKTMADR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36208 # 1r2qA.186.98 read from T0506.t04.many.frag # found chain 1r2qA in training set T0506 186 :SEATRLNAI 1r2qA 113 :NWVKELQRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36209 # 1jpzA.186.209 read from T0506.t04.many.frag # found chain 1jpzA in training set T0506 186 :SEATRLNAI 1jpzA 207 :EDIKVMNDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36210 # 1mj5A.186.225 read from T0506.t04.many.frag # found chain 1mj5A in training set T0506 186 :SEATRLNAI 1mj5A 226 :DYAGWLSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=36211 # 2b0tA.186.681 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 186 :SEATRLNAI 2b0tA 682 :PVAEALNTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36212 # 1k8kD.186.179 read from T0506.t04.many.frag # found chain 1k8kD in template set T0506 186 :SEATRLNAI 1k8kD 180 :VFMQEFKEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36213 # 1w9hA.186.269 read from T0506.t04.many.frag # found chain 1w9hA in template set T0506 186 :SEATRLNAI 1w9hA 270 :ETVEELKKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36214 # 1p4xA.186.229 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 186 :SEATRLNAI 1p4xA 230 :QLLAQVNQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36215 # 1nar.186.145 read from T0506.t04.many.frag # found chain 1nar in training set T0506 186 :SEATRLNAI 1nar 146 :QLITELKKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36216 # 1wleA.186.348 read from T0506.t04.many.frag # found chain 1wleA in template set T0506 186 :SEATRLNAI 1wleA 349 :ELLEEFLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36217 # 1ss9A.186.174 read from T0506.t04.many.frag # found chain 1ss9A in template set T0506 186 :SEATRLNAI 1ss9A 175 :EWVEQYKDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36218 # 1qo7A.186.258 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 186 :SEATRLNAI 1qo7A 261 :TIGHVLSSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36219 # 1vbkA.186.221 read from T0506.t04.many.frag # found chain 1vbkA in template set Warning: unaligning (T0506)I194 (1vbkA)Y230 because G (3-10) conformation "forbidden" or filtered. T0506 186 :SEATRLNA 1vbkA 222 :SLWNLLKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36220 # 1qwnA.186.487 read from T0506.t04.many.frag # found chain 1qwnA in training set T0506 186 :SEATRLNAI 1qwnA 488 :QRMQEALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36221 # 1hs6A.186.586 read from T0506.t04.many.frag # found chain 1hs6A in template set T0506 186 :SEATRLNAI 1hs6A 586 :RTYQEHKAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36222 # 1vjoA.186.294 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 186 :SEATRLNAI 1vjoA 283 :NCWQRHQKN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36223 # 1mk0A.186.76 read from T0506.t04.many.frag # found chain 1mk0A in training set T0506 186 :SEATRLNAI 1mk0A 77 :FWIKELNSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36224 # 1w2fA.186.182 read from T0506.t04.many.frag # found chain 1w2fA in training set T0506 186 :SEATRLNAI 1w2fA 368 :EVLRRYLNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36225 # 256bA.186.62 read from T0506.t04.many.frag # found chain 256bA in training set T0506 186 :SEATRLNAI 256bA 63 :HGFDILVGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36226 # 1o9rA.186.56 read from T0506.t04.many.frag # found chain 1o9rA in training set T0506 186 :SEATRLNAI 1o9rA 57 :TFRTQLDNH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36227 # 1iq4A.186.54 read from T0506.t04.many.frag # found chain 1iq4A in training set Warning: unaligning (T0506)A193 (1iq4A)G62 because L (left) conformation "forbidden" or filtered. T0506 186 :SEATRLN 1iq4A 55 :EELTLIA T0506 194 :I 1iq4A 63 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=36229 # 1t0qB.187.287 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 187 :EATRLNAIK 1t0qB 288 :WVAKWEPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36230 # 1uzbA.187.104 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 187 :EATRLNAIK 1uzbA 105 :AAALMRRRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36231 # 1lb3A.187.101 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 187 :EATRLNAIK 1lb3A 106 :MEKNLNQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36232 # 1bf5A.187.151 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 187 :EATRLNAIK 1bf5A 301 :LWDRTFSLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36233 # 1ajsA.187.321 read from T0506.t04.many.frag # found chain 1ajsA in training set T0506 187 :EATRLNAIK 1ajsA 322 :NVKTMADRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36234 # 1qo7A.187.259 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 187 :EATRLNAIK 1qo7A 262 :IGHVLSSSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36235 # 1jpzA.187.210 read from T0506.t04.many.frag # found chain 1jpzA in training set T0506 187 :EATRLNAIK 1jpzA 208 :DIKVMNDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36236 # 1hs6A.187.587 read from T0506.t04.many.frag # found chain 1hs6A in template set T0506 187 :EATRLNAIK 1hs6A 587 :TYQEHKASM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36237 # 1izmA.187.156 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 187 :EATRLNAIK 1izmA 155 :IIEYVRTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36238 # 1aisB.187.131 read from T0506.t04.many.frag # found chain 1aisB in template set Warning: unaligning (T0506)K195 (1aisB)G1240 because L (left) conformation "forbidden" or filtered. T0506 187 :EATRLNAI 1aisB 1232 :ILDEAYKR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36239 # 1nnlA.187.93 read from T0506.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0506)K195 (1nnlA)N102 because L (left) conformation "forbidden" or filtered. T0506 187 :EATRLNAI 1nnlA 94 :LVSRLQER Number of specific fragments extracted= 1 number of extra gaps= 1 total=36240 # 2cb5A.187.175 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 187 :EATRLNAIK 2cb5A 177 :MNDILNHKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36241 # 1kaeA.187.38 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)K195 (1kaeA)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 187 :EATRLNAI 1kaeA 39 :ILDNVKAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36242 # 1dc1A.187.252 read from T0506.t04.many.frag # found chain 1dc1A in training set T0506 187 :EATRLNAIK 1dc1A 253 :HWKTANTAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36243 # 1fp3A.187.10 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 187 :EATRLNAIK 1fp3A 11 :WKERVGQEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36244 # 1xfiA.187.82 read from T0506.t04.many.frag # found chain 1xfiA in training set T0506 187 :EATRLNAIK 1xfiA 83 :ILEDLKKDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36245 1nvvS expands to /projects/compbio/data/pdb/1nvv.pdb.gz 1nvvS:# 1nvvS.187.115 read from T0506.t04.many.frag # adding 1nvvS to template set # found chain 1nvvS in template set T0506 187 :EATRLNAIK 1nvvS 681 :YIQPVQLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36246 # 1vjoA.187.295 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 187 :EATRLNAIK 1vjoA 284 :CWQRHQKNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36247 # 1gxyA.187.31 read from T0506.t04.many.frag # found chain 1gxyA in training set T0506 187 :EATRLNAIK 1gxyA 32 :LLQEDFNMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36248 # 1w2fA.187.183 read from T0506.t04.many.frag # found chain 1w2fA in training set T0506 187 :EATRLNAIK 1w2fA 369 :VLRRYLNRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36249 # 1wleA.187.349 read from T0506.t04.many.frag # found chain 1wleA in template set T0506 187 :EATRLNAIK 1wleA 350 :LLEEFLSLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36250 # 1qwnA.187.488 read from T0506.t04.many.frag # found chain 1qwnA in training set T0506 187 :EATRLNAIK 1qwnA 489 :RMQEALKAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36251 # 2pth.187.159 read from T0506.t04.many.frag # found chain 2pth in training set T0506 187 :EATRLNAIK 2pth 160 :LIDEAIDEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36252 # 2b0tA.187.682 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 187 :EATRLNAIK 2b0tA 683 :VAEALNTGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36253 # 1p4xA.187.230 read from T0506.t04.many.frag # found chain 1p4xA in template set T0506 187 :EATRLNAIK 1p4xA 231 :LLAQVNQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36254 # 256bA.187.63 read from T0506.t04.many.frag # found chain 256bA in training set T0506 187 :EATRLNAIK 256bA 64 :GFDILVGQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36255 # 1k8kD.187.180 read from T0506.t04.many.frag # found chain 1k8kD in template set T0506 187 :EATRLNAIK 1k8kD 181 :FMQEFKEGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36256 # 1bgc.187.19 read from T0506.t04.many.frag # found chain 1bgc in training set T0506 187 :EATRLNAIK 1bgc 21 :QVRKIQADG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36257 1za0A expands to /projects/compbio/data/pdb/1za0.pdb.gz 1za0A:Skipped atom 1214, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1216, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1218, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1220, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1222, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1224, because occupancy 0.500 <= existing 0.500 in 1za0A Skipped atom 1226, because occupancy 0.500 <= existing 0.500 in 1za0A # 1za0A.187.101 read from T0506.t04.many.frag # adding 1za0A to template set # found chain 1za0A in template set T0506 187 :EATRLNAIK 1za0A 102 :RWTAEEHLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36258 # 1r2qA.187.99 read from T0506.t04.many.frag # found chain 1r2qA in training set Warning: unaligning (T0506)I194 (1r2qA)Q121 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K195 (1r2qA)A122 because P (beta_P) conformation "forbidden" or filtered. T0506 187 :EATRLNA 1r2qA 114 :WVKELQR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36259 # 1t0qB.188.288 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 188 :ATRLNAIKG 1t0qB 289 :VAKWEPLAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36260 # 1uzbA.188.105 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 188 :ATRLNAIKG 1uzbA 106 :AALMRRRKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36261 # 1lb3A.188.102 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 188 :ATRLNAIKG 1lb3A 107 :EKNLNQALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36262 # 1bf5A.188.152 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 188 :ATRLNAIKG 1bf5A 302 :WDRTFSLFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36263 # 1jpzA.188.211 read from T0506.t04.many.frag # found chain 1jpzA in training set T0506 188 :ATRLNAIKG 1jpzA 209 :IKVMNDLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36264 # 1dc1A.188.253 read from T0506.t04.many.frag # found chain 1dc1A in training set T0506 188 :ATRLNAIKG 1dc1A 254 :WKTANTALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36265 # 1ajsA.188.322 read from T0506.t04.many.frag # found chain 1ajsA in training set T0506 188 :ATRLNAIKG 1ajsA 323 :VKTMADRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36266 # 1vjoA.188.296 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 188 :ATRLNAIKG 1vjoA 285 :WQRHQKNVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36267 # 1izmA.188.157 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 188 :ATRLNAIKG 1izmA 156 :IEYVRTIAM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36268 # 1fp3A.188.11 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 188 :ATRLNAIKG 1fp3A 12 :KERVGQELD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36269 # 1w2fA.188.184 read from T0506.t04.many.frag # found chain 1w2fA in training set T0506 188 :ATRLNAIKG 1w2fA 370 :LRRYLNRLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36270 # 1qo7A.188.260 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 188 :ATRLNAIKG 1qo7A 263 :GHVLSSSPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36271 # 2cb5A.188.176 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 188 :ATRLNAIKG 2cb5A 178 :NDILNHKMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36272 # 1wleA.188.350 read from T0506.t04.many.frag # found chain 1wleA in template set T0506 188 :ATRLNAIKG 1wleA 351 :LEEFLSLQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36273 # 1za0A.188.102 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 188 :ATRLNAIKG 1za0A 103 :WTAEEHLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36274 # 1nvvS.188.116 read from T0506.t04.many.frag # found chain 1nvvS in template set T0506 188 :ATRLNAIKG 1nvvS 682 :IQPVQLRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36275 # 2c5uA.188.292 read from T0506.t04.many.frag # found chain 2c5uA in template set T0506 188 :ATRLNAIKG 2c5uA 292 :ETTYLKYLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36276 # 1hs6A.188.588 read from T0506.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)G196 (1hs6A)H596 because P (beta_P) conformation "forbidden" or filtered. T0506 188 :ATRLNAIK 1hs6A 588 :YQEHKASM Number of specific fragments extracted= 1 number of extra gaps= 1 total=36277 # 1qwnA.188.489 read from T0506.t04.many.frag # found chain 1qwnA in training set T0506 188 :ATRLNAIKG 1qwnA 490 :MQEALKACQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36278 # 256bA.188.64 read from T0506.t04.many.frag # found chain 256bA in training set T0506 188 :ATRLNAIKG 256bA 65 :FDILVGQID Number of specific fragments extracted= 1 number of extra gaps= 0 total=36279 # 1kaeA.188.39 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)K195 (1kaeA)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 188 :ATRLNAI 1kaeA 40 :LDNVKAR T0506 196 :G 1kaeA 48 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=36281 # 1bgc.188.20 read from T0506.t04.many.frag # found chain 1bgc in training set T0506 188 :ATRLNAIKG 1bgc 22 :VRKIQADGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36282 3fapB expands to /projects/compbio/data/pdb/3fap.pdb.gz 3fapB:# 3fapB.188.52 read from T0506.t04.many.frag # adding 3fapB to template set # found chain 3fapB in template set T0506 188 :ATRLNAIKG 3fapB 160 :NQAYGRDLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36283 # 1o9rA.188.58 read from T0506.t04.many.frag # found chain 1o9rA in training set T0506 188 :ATRLNAIKG 1o9rA 59 :RTQLDNHGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36284 # 2b0tA.188.683 read from T0506.t04.many.frag # found chain 2b0tA in template set T0506 188 :ATRLNAIKG 2b0tA 684 :AEALNTGAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36285 # 2pth.188.160 read from T0506.t04.many.frag # found chain 2pth in training set T0506 188 :ATRLNAIKG 2pth 161 :IDEAIDEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36286 # 1mtyB.188.315 read from T0506.t04.many.frag # found chain 1mtyB in training set T0506 188 :ATRLNAIKG 1mtyB 321 :TGKWLEPTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36287 # 1nw3A.188.194 read from T0506.t04.many.frag # found chain 1nw3A in template set T0506 188 :ATRLNAIKG 1nw3A 195 :AETMDREFR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36288 # 1gxyA.188.32 read from T0506.t04.many.frag # found chain 1gxyA in training set Warning: unaligning (T0506)I194 (1gxyA)M39 because G (3-10) conformation "forbidden" or filtered. T0506 188 :ATRLNA 1gxyA 33 :LQEDFN T0506 195 :KG 1gxyA 40 :NA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36290 # 1h7sA.188.176 read from T0506.t04.many.frag # found chain 1h7sA in template set T0506 188 :ATRLNAIKG 1h7sA 177 :IKKEYAKMV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36291 # 1t0qB.189.289 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 189 :TRLNAIKGE 1t0qB 290 :AKWEPLADK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36292 # 1uzbA.189.106 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 189 :TRLNAIKGE 1uzbA 107 :ALMRRRKRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36293 # 1lb3A.189.103 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 189 :TRLNAIKGE 1lb3A 108 :KNLNQALLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36294 # 1bf5A.189.153 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 189 :TRLNAIKGE 1bf5A 303 :DRTFSLFQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36295 # 1za0A.189.103 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 189 :TRLNAIKGE 1za0A 104 :TAEEHLHAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36296 # 1dc1A.189.254 read from T0506.t04.many.frag # found chain 1dc1A in training set T0506 189 :TRLNAIKGE 1dc1A 255 :KTANTALTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36297 # 1nvvS.189.117 read from T0506.t04.many.frag # found chain 1nvvS in template set T0506 189 :TRLNAIKGE 1nvvS 683 :QPVQLRVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36298 # 1izmA.189.158 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 189 :TRLNAIKGE 1izmA 157 :EYVRTIAML Number of specific fragments extracted= 1 number of extra gaps= 0 total=36299 # 2cb5A.189.177 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 189 :TRLNAIKGE 2cb5A 179 :DILNHKMRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36300 # 1fp3A.189.12 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 189 :TRLNAIKGE 1fp3A 13 :ERVGQELDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36301 # 1vjoA.189.297 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 189 :TRLNAIKGE 1vjoA 286 :QRHQKNVEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36302 # 1kaeA.189.40 read from T0506.t04.many.frag # found chain 1kaeA in training set Warning: unaligning (T0506)K195 (1kaeA)G47 because S (epsilon) conformation "forbidden" or filtered. T0506 189 :TRLNAI 1kaeA 41 :DNVKAR T0506 196 :GE 1kaeA 48 :DE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36304 # 1h7sA.189.177 read from T0506.t04.many.frag # found chain 1h7sA in template set T0506 189 :TRLNAIKGE 1h7sA 178 :KKEYAKMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36305 # 2c5uA.189.293 read from T0506.t04.many.frag # found chain 2c5uA in template set T0506 189 :TRLNAIKGE 2c5uA 293 :TTYLKYLDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36306 # 1w2fA.189.185 read from T0506.t04.many.frag # found chain 1w2fA in training set T0506 189 :TRLNAIKGE 1w2fA 371 :RRYLNRLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36307 # 1jpzA.189.212 read from T0506.t04.many.frag # found chain 1jpzA in training set T0506 189 :TRLNAIKGE 1jpzA 210 :KVMNDLVDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36308 # 1qo7A.189.261 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 189 :TRLNAIKGE 1qo7A 264 :HVLSSSPIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36309 # 1ajsA.189.323 read from T0506.t04.many.frag # found chain 1ajsA in training set T0506 189 :TRLNAIKGE 1ajsA 324 :KTMADRILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36310 # 1hs6A.189.589 read from T0506.t04.many.frag # found chain 1hs6A in template set T0506 189 :TRLNAIKGE 1hs6A 589 :QEHKASMHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36311 # 256bA.189.65 read from T0506.t04.many.frag # found chain 256bA in training set T0506 189 :TRLNAIKGE 256bA 66 :DILVGQIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36312 # 1wleA.189.351 read from T0506.t04.many.frag # found chain 1wleA in template set T0506 189 :TRLNAIKGE 1wleA 352 :EEFLSLQME Number of specific fragments extracted= 1 number of extra gaps= 0 total=36313 # 1o9rA.189.59 read from T0506.t04.many.frag # found chain 1o9rA in training set T0506 189 :TRLNAIKGE 1o9rA 60 :TQLDNHGDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36314 # 1qwnA.189.490 read from T0506.t04.many.frag # found chain 1qwnA in training set T0506 189 :TRLNAIKGE 1qwnA 491 :QEALKACQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36315 1zgmA expands to /projects/compbio/data/pdb/1zgm.pdb.gz 1zgmA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1543, because occupancy 0.500 <= existing 0.500 in 1zgmA Skipped atom 1545, because occupancy 0.500 <= existing 0.500 in 1zgmA Skipped atom 1547, because occupancy 0.500 <= existing 0.500 in 1zgmA Skipped atom 1549, because occupancy 0.500 <= existing 0.500 in 1zgmA # 1zgmA.189.199 read from T0506.t04.many.frag # adding 1zgmA to template set # found chain 1zgmA in template set T0506 189 :TRLNAIKGE 1zgmA 188 :EDTSPIIWG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36316 # 1bgc.189.21 read from T0506.t04.many.frag # found chain 1bgc in training set T0506 189 :TRLNAIKGE 1bgc 23 :RKIQADGAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36317 # 1up8A.189.385 read from T0506.t04.many.frag # found chain 1up8A in template set T0506 189 :TRLNAIKGE 1up8A 385 :TEVATRALK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36318 1tg6A expands to /projects/compbio/data/pdb/1tg6.pdb.gz 1tg6A:# 1tg6A.189.198 read from T0506.t04.many.frag # adding 1tg6A to template set # found chain 1tg6A in template set T0506 189 :TRLNAIKGE 1tg6A 143 :MKLKKQLYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36319 # 3fapB.189.53 read from T0506.t04.many.frag # found chain 3fapB in template set T0506 189 :TRLNAIKGE 3fapB 161 :QAYGRDLME Number of specific fragments extracted= 1 number of extra gaps= 0 total=36320 # 1j1jA.189.40 read from T0506.t04.many.frag # found chain 1j1jA in template set T0506 189 :TRLNAIKGE 1j1jA 29 :QSLEQTARE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36321 # 1gxyA.189.33 read from T0506.t04.many.frag # found chain 1gxyA in training set Warning: unaligning (T0506)I194 (1gxyA)M39 because G (3-10) conformation "forbidden" or filtered. T0506 189 :TRLNA 1gxyA 34 :QEDFN T0506 195 :KGE 1gxyA 40 :NAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36323 # 1t0qB.190.290 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 190 :RLNAIKGEA 1t0qB 291 :KWEPLADKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36324 # 1uzbA.190.107 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 190 :RLNAIKGEA 1uzbA 108 :LMRRRKREL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36325 # 1lb3A.190.104 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 190 :RLNAIKGEA 1lb3A 109 :NLNQALLDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36326 # 1dc1A.190.255 read from T0506.t04.many.frag # found chain 1dc1A in training set T0506 190 :RLNAIKGEA 1dc1A 256 :TANTALTRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36327 # 1bf5A.190.154 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 190 :RLNAIKGEA 1bf5A 304 :RTFSLFQQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36328 # 1h7sA.190.178 read from T0506.t04.many.frag # found chain 1h7sA in template set T0506 190 :RLNAIKGEA 1h7sA 179 :KEYAKMVQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36329 # 1za0A.190.104 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 190 :RLNAIKGEA 1za0A 105 :AEEHLHAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36330 # 1vjoA.190.298 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 190 :RLNAIKGEA 1vjoA 287 :RHQKNVEYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36331 # 2cb5A.190.178 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 190 :RLNAIKGEA 2cb5A 180 :ILNHKMREF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36332 # 1nvvS.190.118 read from T0506.t04.many.frag # found chain 1nvvS in template set T0506 190 :RLNAIKGEA 1nvvS 684 :PVQLRVLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36333 # 1ajsA.190.324 read from T0506.t04.many.frag # found chain 1ajsA in training set T0506 190 :RLNAIKGEA 1ajsA 325 :TMADRILSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36334 # 1izmA.190.159 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 190 :RLNAIKGEA 1izmA 158 :YVRTIAMLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36335 # 1w2fA.190.186 read from T0506.t04.many.frag # found chain 1w2fA in training set T0506 190 :RLNAIKGEA 1w2fA 372 :RYLNRLQQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36336 # 1l8bA.190.97 read from T0506.t04.many.frag # found chain 1l8bA in training set T0506 190 :RLNAIKGEA 1l8bA 125 :DLDRFWLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=36337 # 1fp3A.190.13 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 190 :RLNAIKGEA 1fp3A 14 :RVGQELDRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36338 # 2c5uA.190.294 read from T0506.t04.many.frag # found chain 2c5uA in template set T0506 190 :RLNAIKGEA 2c5uA 294 :TYLKYLDRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36339 # 1zgmA.190.200 read from T0506.t04.many.frag # found chain 1zgmA in template set T0506 190 :RLNAIKGEA 1zgmA 189 :DTSPIIWGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36340 # 256bA.190.66 read from T0506.t04.many.frag # found chain 256bA in training set T0506 190 :RLNAIKGEA 256bA 67 :ILVGQIDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36341 # 1n93X.190.221 read from T0506.t04.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)L191 (1n93X)P218 because C (cis) conformation "forbidden" or filtered. T0506 190 :R 1n93X 217 :S T0506 192 :NAIKGEA 1n93X 219 :GKEFMDQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36343 # 1wleA.190.352 read from T0506.t04.many.frag # found chain 1wleA in template set T0506 190 :RLNAIKGEA 1wleA 353 :EFLSLQMEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36344 # 1qo7A.190.262 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 190 :RLNAIKGEA 1qo7A 265 :VLSSSPIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36345 1eerA expands to /projects/compbio/data/pdb/1eer.pdb.gz 1eerA:# 1eerA.190.68 read from T0506.t04.many.frag # adding 1eerA to template set # found chain 1eerA in template set T0506 190 :RLNAIKGEA 1eerA 69 :LLSEAVLRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36346 # 1jpzA.190.213 read from T0506.t04.many.frag # found chain 1jpzA in training set T0506 190 :RLNAIKGEA 1jpzA 211 :VMNDLVDKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36347 # 1hs6A.190.590 read from T0506.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)K195 (1hs6A)M595 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G196 (1hs6A)H596 because P (beta_P) conformation "forbidden" or filtered. T0506 190 :RLNAI 1hs6A 590 :EHKAS T0506 197 :EA 1hs6A 597 :PV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36349 # 1o9rA.190.60 read from T0506.t04.many.frag # found chain 1o9rA in training set T0506 190 :RLNAIKGEA 1o9rA 61 :QLDNHGDTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36350 # 1pmi.190.235 read from T0506.t04.many.frag # found chain 1pmi in training set T0506 190 :RLNAIKGEA 1pmi 237 :DIDSRLPEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36351 # 1up8A.190.386 read from T0506.t04.many.frag # found chain 1up8A in template set T0506 190 :RLNAIKGEA 1up8A 386 :EVATRALKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36352 # 3fapB.190.54 read from T0506.t04.many.frag # found chain 3fapB in template set T0506 190 :RLNAIKGEA 3fapB 162 :AYGRDLMEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36353 1yb0A expands to /projects/compbio/data/pdb/1yb0.pdb.gz 1yb0A:# 1yb0A.190.102 read from T0506.t04.many.frag # adding 1yb0A to template set # found chain 1yb0A in template set T0506 190 :RLNAIKGEA 1yb0A 103 :KAENNAVDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36354 # 1bgc.190.22 read from T0506.t04.many.frag # found chain 1bgc in training set T0506 190 :RLNAIKGEA 1bgc 24 :KIQADGAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36355 # 1t0qB.191.291 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 191 :LNAIKGEAS 1t0qB 292 :WEPLADKAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36356 # 1uzbA.191.108 read from T0506.t04.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)I194 (1uzbA)R112 because G (3-10) conformation "forbidden" or filtered. T0506 191 :LNA 1uzbA 109 :MRR T0506 195 :KGEAS 1uzbA 113 :KRELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36358 # 1nvvS.191.119 read from T0506.t04.many.frag # found chain 1nvvS in template set T0506 191 :LNAIKGEAS 1nvvS 685 :VQLRVLNVC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36359 # 1n93X.191.222 read from T0506.t04.many.frag # found chain 1n93X in training set Warning: unaligning (T0506)L191 (1n93X)P218 because C (cis) conformation "forbidden" or filtered. T0506 192 :NAIKGEAS 1n93X 219 :GKEFMDQI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36360 # 1za0A.191.105 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 191 :LNAIKGEAS 1za0A 106 :EEHLHAIAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36361 # 1h7sA.191.179 read from T0506.t04.many.frag # found chain 1h7sA in template set T0506 191 :LNAIKGEAS 1h7sA 180 :EYAKMVQVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36362 # 1zvdA.191.295 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 191 :LNAIKGEAS 1zvdA 664 :DEERRARLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36363 # 2cb5A.191.179 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 191 :LNAIKGEAS 2cb5A 181 :LNHKMREFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36364 # 1vjoA.191.299 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 191 :LNAIKGEAS 1vjoA 288 :HQKNVEYLW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36365 # 1lb3A.191.105 read from T0506.t04.many.frag # found chain 1lb3A in training set T0506 191 :LNAIKGEAS 1lb3A 110 :LNQALLDLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36366 # 1bf5A.191.155 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 191 :LNAIKGEAS 1bf5A 305 :TFSLFQQLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36367 # 1fp3A.191.14 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 191 :LNAIKGEAS 1fp3A 15 :VGQELDRVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36368 # 1zgmA.191.201 read from T0506.t04.many.frag # found chain 1zgmA in template set T0506 191 :LNAIKGEAS 1zgmA 190 :TSPIIWGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36369 # 1dc1A.191.256 read from T0506.t04.many.frag # found chain 1dc1A in training set T0506 191 :LNAIKGEAS 1dc1A 257 :ANTALTRIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36370 # 1l8bA.191.98 read from T0506.t04.many.frag # found chain 1l8bA in training set T0506 191 :LNAIKGEAS 1l8bA 126 :LDRFWLETL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36371 1ztpA expands to /projects/compbio/data/pdb/1ztp.pdb.gz 1ztpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1ztpA.191.138 read from T0506.t04.many.frag # adding 1ztpA to template set # found chain 1ztpA in template set T0506 191 :LNAIKGEAS 1ztpA 139 :LDHAWAGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36372 # 1yb0A.191.103 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 191 :LNAIKGEAS 1yb0A 104 :AENNAVDVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36373 # 1vjuA.191.213 read from T0506.t04.many.frag # found chain 1vjuA in training set T0506 191 :LNAIKGEAS 1vjuA 214 :VGKGYMDAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36374 # 1pmi.191.236 read from T0506.t04.many.frag # found chain 1pmi in training set T0506 191 :LNAIKGEAS 1pmi 238 :IDSRLPELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36375 # 1jk0B.191.218 read from T0506.t04.many.frag # found chain 1jk0B in template set T0506 191 :LNAIKGEAS 1jk0B 219 :DRGAYTDFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36376 # 1eerA.191.69 read from T0506.t04.many.frag # found chain 1eerA in template set T0506 191 :LNAIKGEAS 1eerA 70 :LSEAVLRGQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36377 # 1hs6A.191.591 read from T0506.t04.many.frag # found chain 1hs6A in template set Warning: unaligning (T0506)I194 (1hs6A)S594 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G196 (1hs6A)H596 because P (beta_P) conformation "forbidden" or filtered. T0506 191 :LNA 1hs6A 591 :HKA T0506 195 :K 1hs6A 595 :M T0506 197 :EAS 1hs6A 597 :PVT Number of specific fragments extracted= 3 number of extra gaps= 2 total=36380 # 2c5uA.191.295 read from T0506.t04.many.frag # found chain 2c5uA in template set T0506 191 :LNAIKGEAS 2c5uA 295 :YLKYLDRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36381 # 1r1tA.191.43 read from T0506.t04.many.frag # found chain 1r1tA in training set T0506 191 :LNAIKGEAS 1r1tA 44 :ADPNRLRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36382 # 3fapB.191.55 read from T0506.t04.many.frag # found chain 3fapB in template set T0506 191 :LNAIKGEAS 3fapB 163 :YGRDLMEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36383 # 1o9rA.191.61 read from T0506.t04.many.frag # found chain 1o9rA in training set T0506 191 :LNAIKGEAS 1o9rA 62 :LDNHGDTIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36384 # 1w2fA.191.187 read from T0506.t04.many.frag # found chain 1w2fA in training set T0506 191 :LNAIKGEAS 1w2fA 373 :YLNRLQQIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36385 # 1up8A.191.387 read from T0506.t04.many.frag # found chain 1up8A in template set T0506 191 :LNAIKGEAS 1up8A 387 :VATRALKAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36386 # 1izmA.191.160 read from T0506.t04.many.frag # found chain 1izmA in template set T0506 191 :LNAIKGEAS 1izmA 159 :VRTIAMLFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36387 # 1qo7A.191.263 read from T0506.t04.many.frag # found chain 1qo7A in training set T0506 191 :LNAIKGEAS 1qo7A 266 :LSSSPIALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36388 # 1t0qB.192.292 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 192 :NAIKGEASR 1t0qB 293 :EPLADKAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36389 # 1uzbA.192.109 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 192 :NAIKGEASR 1uzbA 110 :RRRKRELEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36390 # 1n0qA.192.43 read from T0506.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0506)I194 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0506 192 :NA 1n0qA 44 :RN T0506 195 :KGEASR 1n0qA 47 :HLEVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36392 # 1n93X.192.223 read from T0506.t04.many.frag # found chain 1n93X in training set T0506 192 :NAIKGEASR 1n93X 219 :GKEFMDQIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36393 # 1l8bA.192.99 read from T0506.t04.many.frag # found chain 1l8bA in training set T0506 192 :NAIKGEASR 1l8bA 127 :DRFWLETLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36394 # 1zvdA.192.296 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 192 :NAIKGEASR 1zvdA 665 :EERRARLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36395 # 1hf2A.192.55 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 192 :NAIKGEASR 1hf2A 56 :SQDIPRIVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36396 # 1yb0A.192.104 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 192 :NAIKGEASR 1yb0A 105 :ENNAVDVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36397 # 1nvvS.192.120 read from T0506.t04.many.frag # found chain 1nvvS in template set T0506 192 :NAIKGEASR 1nvvS 686 :QLRVLNVCR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36398 # 1fp3A.192.15 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 192 :NAIKGEASR 1fp3A 16 :GQELDRVMA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36399 # 1pmi.192.237 read from T0506.t04.many.frag # found chain 1pmi in training set T0506 192 :NAIKGEASR 1pmi 239 :DSRLPELIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36400 # 1r1tA.192.44 read from T0506.t04.many.frag # found chain 1r1tA in training set T0506 192 :NAIKGEASR 1r1tA 45 :DPNRLRLLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36401 # 1szwA.192.300 read from T0506.t04.many.frag # found chain 1szwA in template set T0506 192 :NAIKGEASR 1szwA 279 :VAAETELQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36402 # 1za0A.192.106 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 192 :NAIKGEASR 1za0A 107 :EHLHAIALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36403 # 1h7sA.192.180 read from T0506.t04.many.frag # found chain 1h7sA in template set T0506 192 :NAIKGEASR 1h7sA 181 :YAKMVQVLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36404 # 1y9iA.192.24 read from T0506.t04.many.frag # found chain 1y9iA in training set T0506 192 :NAIKGEASR 1y9iA 25 :IDDIAELVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36405 # 2cb5A.192.180 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 192 :NAIKGEASR 2cb5A 182 :NHKMREFCI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36406 # 1ikpA.192.287 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 192 :NAIKGEASR 1ikpA 288 :GYPVQRLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36407 # 1vjuA.192.214 read from T0506.t04.many.frag # found chain 1vjuA in training set T0506 192 :NAIKGEASR 1vjuA 215 :GKGYMDAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36408 # 1zgmA.192.202 read from T0506.t04.many.frag # found chain 1zgmA in template set T0506 192 :NAIKGEASR 1zgmA 191 :SPIIWGLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36409 # 1jk0B.192.219 read from T0506.t04.many.frag # found chain 1jk0B in template set T0506 192 :NAIKGEASR 1jk0B 220 :RGAYTDFSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36410 # 1bf5A.192.156 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 192 :NAIKGEASR 1bf5A 306 :FSLFQQLIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36411 # 1ztpA.192.139 read from T0506.t04.many.frag # found chain 1ztpA in template set T0506 192 :NAIKGEASR 1ztpA 140 :DHAWAGIAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36412 # 1w0hA.192.113 read from T0506.t04.many.frag # found chain 1w0hA in training set Warning: unaligning (T0506)A193 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w0hA)D234 Warning: unaligning (T0506)I194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w0hA)D234 T0506 192 :N 1w0hA 232 :S T0506 195 :KGEASR 1w0hA 235 :MSKFLN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36414 # 1vjoA.192.300 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 192 :NAIKGEASR 1vjoA 289 :QKNVEYLWE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36415 2exrA expands to /projects/compbio/data/pdb/2exr.pdb.gz 2exrA:Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 53, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 59, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 252, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 256, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 258, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 260, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 278, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 280, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 282, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 380, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 424, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 428, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 430, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 432, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 434, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 436, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 438, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 440, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1102, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1108, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1110, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1223, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1227, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1229, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1231, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1458, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1462, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1464, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1466, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1468, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1470, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1472, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1474, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1664, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1668, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1670, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1672, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1674, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1811, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1815, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 1817, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2111, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2115, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2117, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2119, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2121, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2123, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2142, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2146, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2148, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2243, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2247, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2249, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2251, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2253, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2255, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2257, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2259, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2262, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2266, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2268, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2270, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2272, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2295, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2299, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2301, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2303, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2305, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2346, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2350, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2352, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2354, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2356, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2358, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2360, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2362, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2381, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2385, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2387, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2389, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2391, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2393, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2395, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2397, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2408, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2412, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2414, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2416, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2418, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2425, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2429, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2431, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2433, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2435, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2437, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2439, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2441, because occupancy 0.300 <= existing 0.700 in 2exrA Skipped atom 2474, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2478, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2480, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2482, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2484, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2749, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2753, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2755, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2757, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2759, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 2761, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3090, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3094, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3096, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3098, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3100, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3214, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3218, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3220, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3222, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3224, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3226, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3242, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3246, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3248, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3250, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3252, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3254, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3367, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3371, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3373, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3416, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3420, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3422, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3424, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3426, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3428, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3510, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3514, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3516, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3518, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3520, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3522, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 3524, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3904, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3908, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3910, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3912, because occupancy 0.500 <= existing 0.500 in 2exrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3914, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4000, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4004, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4006, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4008, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4010, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4012, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4014, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4016, because occupancy 0.500 <= existing 0.500 in 2exrA Skipped atom 4019, because occupancy 0.350 <= existing 0.350 in 2exrA Skipped atom 4020, because occupancy 0.300 <= existing 0.350 in 2exrA Skipped atom 4024, because occupancy 0.350 <= existing 0.350 in 2exrA Skipped atom 4025, because occupancy 0.300 <= existing 0.350 in 2exrA Skipped atom 4027, because occupancy 0.350 <= existing 0.350 in 2exrA Skipped atom 4028, because occupancy 0.300 <= existing 0.350 in 2exrA # 2exrA.192.388 read from T0506.t04.many.frag # adding 2exrA to template set # found chain 2exrA in template set T0506 192 :NAIKGEASR 2exrA 389 :KRDIGDFNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36416 # 1hs6A.192.592 read from T0506.t04.many.frag # found chain 1hs6A in template set T0506 192 :NAIKGEASR 1hs6A 592 :KASMHPVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36417 # 1t77A.192.341 read from T0506.t04.many.frag # found chain 1t77A in template set T0506 192 :NAIKGEASR 1t77A 2417 :SCQLHQWID Number of specific fragments extracted= 1 number of extra gaps= 0 total=36418 # 2c5uA.192.296 read from T0506.t04.many.frag # found chain 2c5uA in template set T0506 192 :NAIKGEASR 2c5uA 296 :LKYLDRALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36419 # 1j2rA.192.142 read from T0506.t04.many.frag # found chain 1j2rA in training set T0506 192 :NAIKGEASR 1j2rA 143 :NIGVESTAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36420 # 1t0qB.193.293 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 193 :AIKGEASRL 1t0qB 294 :PLADKAIEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36421 # 1n0qA.193.44 read from T0506.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0506)I194 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0506 193 :A 1n0qA 45 :N T0506 195 :KGEASRL 1n0qA 47 :HLEVVKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36423 # 1uzbA.193.110 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 193 :AIKGEASRL 1uzbA 111 :RRKRELEAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36424 # 1l8bA.193.100 read from T0506.t04.many.frag # found chain 1l8bA in training set T0506 193 :AIKGEASRL 1l8bA 128 :RFWLETLLC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36425 # 1n93X.193.224 read from T0506.t04.many.frag # found chain 1n93X in training set T0506 193 :AIKGEASRL 1n93X 220 :KEFMDQIKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36426 # 1szwA.193.301 read from T0506.t04.many.frag # found chain 1szwA in template set T0506 193 :AIKGEASRL 1szwA 280 :AAETELQAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36427 # 1r1tA.193.45 read from T0506.t04.many.frag # found chain 1r1tA in training set T0506 193 :AIKGEASRL 1r1tA 46 :PNRLRLLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36428 # 1fp3A.193.16 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 193 :AIKGEASRL 1fp3A 17 :QELDRVMAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36429 # 1zvdA.193.297 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 193 :AIKGEASRL 1zvdA 666 :ERRARLLQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36430 # 1za0A.193.107 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 193 :AIKGEASRL 1za0A 108 :HLHAIALRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36431 # 1hf2A.193.56 read from T0506.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)I194 (1hf2A)D58 because G (3-10) conformation "forbidden" or filtered. T0506 193 :A 1hf2A 57 :Q T0506 195 :KGEASRL 1hf2A 59 :IPRIVSH Number of specific fragments extracted= 2 number of extra gaps= 1 total=36433 # 1yb0A.193.105 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 193 :AIKGEASRL 1yb0A 106 :NNAVDVVRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36434 # 1y9iA.193.25 read from T0506.t04.many.frag # found chain 1y9iA in training set T0506 193 :AIKGEASRL 1y9iA 26 :DDIAELVLF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36435 # 1ikpA.193.288 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 193 :AIKGEASRL 1ikpA 289 :YPVQRLVAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36436 # 1ztpA.193.140 read from T0506.t04.many.frag # found chain 1ztpA in template set T0506 193 :AIKGEASRL 1ztpA 141 :HAWAGIARA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36437 # 1kpsB.193.71 read from T0506.t04.many.frag # found chain 1kpsB in template set T0506 193 :AIKGEASRL 1kpsB 490 :TAVLDAIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36438 # 1k4iA.193.111 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 193 :AIKGEASRL 1k4iA 112 :HDRALACRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36439 # 1vjuA.193.215 read from T0506.t04.many.frag # found chain 1vjuA in training set T0506 193 :AIKGEASRL 1vjuA 216 :KGYMDAYIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36440 # 2exrA.193.389 read from T0506.t04.many.frag # found chain 2exrA in template set T0506 193 :AIKGEASRL 2exrA 390 :RDIGDFNRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36441 # 1nvvS.193.121 read from T0506.t04.many.frag # found chain 1nvvS in template set T0506 193 :AIKGEASRL 1nvvS 687 :LRVLNVCRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36442 1iapA expands to /projects/compbio/data/pdb/1iap.pdb.gz 1iapA:# 1iapA.193.174 read from T0506.t04.many.frag # adding 1iapA to template set # found chain 1iapA in template set T0506 193 :AIKGEASRL 1iapA 216 :AAVVNAIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36443 # 1zgmA.193.203 read from T0506.t04.many.frag # found chain 1zgmA in template set T0506 193 :AIKGEASRL 1zgmA 192 :PIIWGLSRR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36444 # 1h7sA.193.181 read from T0506.t04.many.frag # found chain 1h7sA in template set T0506 193 :AIKGEASRL 1h7sA 182 :AKMVQVLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36445 # 2cb5A.193.181 read from T0506.t04.many.frag # found chain 2cb5A in template set T0506 193 :AIKGEASRL 2cb5A 183 :HKMREFCIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36446 # 1pmi.193.238 read from T0506.t04.many.frag # found chain 1pmi in training set T0506 193 :AIKGEASRL 1pmi 240 :SRLPELIQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36447 # 1w0hA.193.114 read from T0506.t04.many.frag # found chain 1w0hA in training set Warning: unaligning (T0506)A193 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w0hA)D234 Warning: unaligning (T0506)I194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w0hA)D234 T0506 195 :KGEASRL 1w0hA 235 :MSKFLNI Number of specific fragments extracted= 1 number of extra gaps= 1 total=36448 # 1t77A.193.342 read from T0506.t04.many.frag # found chain 1t77A in template set T0506 193 :AIKGEASRL 1t77A 2418 :CQLHQWIDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36449 # 1iq4A.193.93 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 193 :AIKGEASRL 1iq4A 94 :ERMYEFLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36450 # 1dqaA.193.329 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 193 :AIKGEASRL 1dqaA 751 :AHAANIVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36451 # 1yiiA.193.145 read from T0506.t04.many.frag # found chain 1yiiA in training set T0506 193 :AIKGEASRL 1yiiA 147 :GHFQRLLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36452 # 1n0qA.194.45 read from T0506.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0506)I194 (1n0qA)G46 because L (left) conformation "forbidden" or filtered. T0506 195 :KGEASRLA 1n0qA 47 :HLEVVKLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36453 # 1t0qB.194.294 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 194 :IKGEASRLA 1t0qB 295 :LADKAIEAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36454 # 1l8bA.194.101 read from T0506.t04.many.frag # found chain 1l8bA in training set T0506 194 :IKGEASRLA 1l8bA 129 :FWLETLLCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36455 # 1yb0A.194.106 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 194 :IKGEASRLA 1yb0A 107 :NAVDVVRQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36456 # 1hf2A.194.57 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 194 :IKGEASRLA 1hf2A 58 :DIPRIVSHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36457 # 1r1tA.194.46 read from T0506.t04.many.frag # found chain 1r1tA in training set T0506 194 :IKGEASRLA 1r1tA 47 :NRLRLLSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36458 # 1uzbA.194.111 read from T0506.t04.many.frag # found chain 1uzbA in training set Warning: unaligning (T0506)I194 (1uzbA)R112 because G (3-10) conformation "forbidden" or filtered. T0506 195 :KGEASRLA 1uzbA 113 :KRELEATL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36459 # 1ikpA.194.289 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 194 :IKGEASRLA 1ikpA 290 :PVQRLVALY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36460 # 1n93X.194.225 read from T0506.t04.many.frag # found chain 1n93X in training set T0506 194 :IKGEASRLA 1n93X 221 :EFMDQIKLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36461 # 1za0A.194.108 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 194 :IKGEASRLA 1za0A 109 :LHAIALREY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36462 # 1k4iA.194.112 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 194 :IKGEASRLA 1k4iA 113 :DRALACRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=36463 # 1fp3A.194.17 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 194 :IKGEASRLA 1fp3A 18 :ELDRVMAFW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36464 # 1dqaA.194.330 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 194 :IKGEASRLA 1dqaA 752 :HAANIVTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36465 # 1szwA.194.302 read from T0506.t04.many.frag # found chain 1szwA in template set T0506 194 :IKGEASRLA 1szwA 281 :AETELQALL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36466 # 1rloA.194.190 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 194 :IKGEASRLA 1rloA 191 :HKANGISRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36467 # 1iq4A.194.94 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 194 :IKGEASRLA 1iq4A 95 :RMYEFLDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36468 # 1iapA.194.175 read from T0506.t04.many.frag # found chain 1iapA in template set T0506 194 :IKGEASRLA 1iapA 217 :AVVNAIGLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36469 # 1zvdA.194.298 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 194 :IKGEASRLA 1zvdA 667 :RRARLLQFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36470 # 1s2oA.194.161 read from T0506.t04.many.frag # found chain 1s2oA in training set Warning: unaligning (T0506)I194 (1s2oA)N162 because Y (epsilon') conformation "forbidden" or filtered. T0506 195 :KGEASRLA 1s2oA 163 :KGNATQYL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36471 # 1mw9X.194.495 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 194 :IKGEASRLA 1mw9X 496 :TYASIISTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36472 # 1ztpA.194.141 read from T0506.t04.many.frag # found chain 1ztpA in template set T0506 194 :IKGEASRLA 1ztpA 142 :AWAGIARAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36473 # 1y9iA.194.26 read from T0506.t04.many.frag # found chain 1y9iA in training set T0506 194 :IKGEASRLA 1y9iA 27 :DIAELVLFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36474 # 2baa.194.213 read from T0506.t04.many.frag # found chain 2baa in training set T0506 194 :IKGEASRLA 2baa 214 :DRIGFYKRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36475 # 1kpsB.194.72 read from T0506.t04.many.frag # found chain 1kpsB in template set T0506 194 :IKGEASRLA 1kpsB 491 :AVLDAIDAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36476 # 1t8tA.194.182 read from T0506.t04.many.frag # found chain 1t8tA in template set T0506 194 :IKGEASRLA 1t8tA 318 :DPAGELGRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36477 # 1pmi.194.239 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)I194 (1pmi)R241 because G (3-10) conformation "forbidden" or filtered. T0506 195 :KGEASRLA 1pmi 242 :LPELIQRL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36478 # 1yiiA.194.146 read from T0506.t04.many.frag # found chain 1yiiA in training set T0506 194 :IKGEASRLA 1yiiA 148 :HFQRLLVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36479 # 1lycA.194.270 read from T0506.t04.many.frag # found chain 1lycA in training set T0506 194 :IKGEASRLA 1lycA 271 :RYRAAMAKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36480 # 1w0hA.194.115 read from T0506.t04.many.frag # found chain 1w0hA in training set Warning: unaligning (T0506)I194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w0hA)D234 T0506 195 :KGEASRLA 1w0hA 235 :MSKFLNIQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36481 # 1nvvS.194.122 read from T0506.t04.many.frag # found chain 1nvvS in template set T0506 194 :IKGEASRLA 1nvvS 688 :RVLNVCRHW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36482 # 1t0qB.195.295 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 195 :KGEASRLAV 1t0qB 296 :ADKAIEAYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36483 # 1n0qA.195.46 read from T0506.t04.many.frag # found chain 1n0qA in training set T0506 195 :KGEASRLAV 1n0qA 47 :HLEVVKLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36484 # 1k4iA.195.113 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 195 :KGEASRLAV 1k4iA 114 :RALACRMLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36485 # 1ikpA.195.290 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 195 :KGEASRLAV 1ikpA 291 :VQRLVALYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36486 # 1l8bA.195.102 read from T0506.t04.many.frag # found chain 1l8bA in training set T0506 195 :KGEASRLAV 1l8bA 130 :WLETLLCLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36487 # 1hf2A.195.58 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 195 :KGEASRLAV 1hf2A 59 :IPRIVSHLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36488 # 1yb0A.195.107 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 195 :KGEASRLAV 1yb0A 108 :AVDVVRQLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36489 # 1r1tA.195.47 read from T0506.t04.many.frag # found chain 1r1tA in training set T0506 195 :KGEASRLAV 1r1tA 48 :RLRLLSLLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36490 # 1n93X.195.226 read from T0506.t04.many.frag # found chain 1n93X in training set T0506 195 :KGEASRLAV 1n93X 222 :FMDQIKLVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36491 # 1fp3A.195.18 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 195 :KGEASRLAV 1fp3A 19 :LDRVMAFWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36492 # 1s2oA.195.162 read from T0506.t04.many.frag # found chain 1s2oA in training set Warning: unaligning (T0506)G196 (1s2oA)G164 because H (helix) conformation "forbidden" or filtered. T0506 195 :K 1s2oA 163 :K T0506 197 :EASRLAV 1s2oA 165 :NATQYLQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36494 # 1iq4A.195.95 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 195 :KGEASRLAV 1iq4A 96 :MYEFLDKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36495 # 1iapA.195.176 read from T0506.t04.many.frag # found chain 1iapA in template set T0506 195 :KGEASRLAV 1iapA 218 :VVNAIGLYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36496 # 1dqaA.195.331 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 195 :KGEASRLAV 1dqaA 753 :AANIVTAIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36497 # 1uzbA.195.112 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 195 :KGEASRLAV 1uzbA 113 :KRELEATLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36498 # 2baa.195.214 read from T0506.t04.many.frag # found chain 2baa in training set T0506 195 :KGEASRLAV 2baa 215 :RIGFYKRYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36499 # 1rloA.195.191 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 195 :KGEASRLAV 1rloA 192 :KANGISRLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36500 # 1za0A.195.109 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 195 :KGEASRLAV 1za0A 110 :HAIALREYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36501 # 1y9iA.195.27 read from T0506.t04.many.frag # found chain 1y9iA in training set T0506 195 :KGEASRLAV 1y9iA 28 :IAELVLFLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36502 # 1mw9X.195.496 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 195 :KGEASRLAV 1mw9X 497 :YASIISTIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36503 # 1zvdA.195.299 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 195 :KGEASRLAV 1zvdA 668 :RARLLQFVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36504 # 1kpsB.195.73 read from T0506.t04.many.frag # found chain 1kpsB in template set T0506 195 :KGEASRLAV 1kpsB 492 :VLDAIDALM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36505 # 1yiiA.195.147 read from T0506.t04.many.frag # found chain 1yiiA in training set T0506 195 :KGEASRLAV 1yiiA 149 :FQRLLVVLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36506 # 1szwA.195.303 read from T0506.t04.many.frag # found chain 1szwA in template set T0506 195 :KGEASRLAV 1szwA 282 :ETELQALLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36507 # 1nnlA.195.111 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 195 :KGEASRLAV 1nnlA 112 :FRSIVEHVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36508 # 1ztpA.195.142 read from T0506.t04.many.frag # found chain 1ztpA in template set T0506 195 :KGEASRLAV 1ztpA 143 :WAGIARAVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36509 # 1kwgA.195.575 read from T0506.t04.many.frag # found chain 1kwgA in training set T0506 195 :KGEASRLAV 1kwgA 576 :AGRLLSALA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36510 # 1d8wA.195.390 read from T0506.t04.many.frag # found chain 1d8wA in training set T0506 195 :KGEASRLAV 1d8wA 392 :WQAVWEMYC Number of specific fragments extracted= 1 number of extra gaps= 0 total=36511 # 1t8tA.195.183 read from T0506.t04.many.frag # found chain 1t8tA in template set T0506 195 :KGEASRLAV 1t8tA 319 :PAGELGRVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36512 # 1i24A.195.280 read from T0506.t04.many.frag # found chain 1i24A in template set T0506 195 :KGEASRLAV 1i24A 271 :TVQCVEIAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36513 # 1t0qB.196.296 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 196 :GEASRLAVL 1t0qB 297 :DKAIEAYCS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36514 # 1n0qA.196.47 read from T0506.t04.many.frag # found chain 1n0qA in training set T0506 196 :GEASRLAVL 1n0qA 48 :LEVVKLLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36515 # 1k4iA.196.114 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 196 :GEASRLAVL 1k4iA 115 :ALACRMLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36516 # 1hf2A.196.59 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 196 :GEASRLAVL 1hf2A 60 :PRIVSHLRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36517 # 1l8bA.196.103 read from T0506.t04.many.frag # found chain 1l8bA in training set T0506 196 :GEASRLAVL 1l8bA 131 :LETLLCLIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36518 # 1ikpA.196.291 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 196 :GEASRLAVL 1ikpA 292 :QRLVALYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36519 # 1iq4A.196.96 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 196 :GEASRLAVL 1iq4A 97 :YEFLDKLIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36520 # 1r1tA.196.48 read from T0506.t04.many.frag # found chain 1r1tA in training set T0506 196 :GEASRLAVL 1r1tA 49 :LRLLSLLAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36521 # 1yiiA.196.148 read from T0506.t04.many.frag # found chain 1yiiA in training set T0506 196 :GEASRLAVL 1yiiA 150 :QRLLVVLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36522 # 1yb0A.196.108 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 196 :GEASRLAVL 1yb0A 109 :VDVVRQLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36523 # 1rloA.196.192 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 196 :GEASRLAVL 1rloA 193 :ANGISRLLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36524 # 1dqaA.196.332 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 196 :GEASRLAVL 1dqaA 754 :ANIVTAIYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36525 # 1i24A.196.281 read from T0506.t04.many.frag # found chain 1i24A in template set T0506 196 :GEASRLAVL 1i24A 272 :VQCVEIAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36526 # 1mw9X.196.497 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 196 :GEASRLAVL 1mw9X 498 :ASIISTIQD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36527 # 1iapA.196.177 read from T0506.t04.many.frag # found chain 1iapA in template set T0506 196 :GEASRLAVL 1iapA 219 :VNAIGLYMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36528 # 2baa.196.215 read from T0506.t04.many.frag # found chain 2baa in training set T0506 196 :GEASRLAVL 2baa 216 :IGFYKRYCD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36529 # 1kpsB.196.74 read from T0506.t04.many.frag # found chain 1kpsB in template set T0506 196 :GEASRLAVL 1kpsB 493 :LDAIDALMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36530 # 1n93X.196.227 read from T0506.t04.many.frag # found chain 1n93X in training set T0506 196 :GEASRLAVL 1n93X 223 :MDQIKLVAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36531 # 1uzbA.196.113 read from T0506.t04.many.frag # found chain 1uzbA in training set T0506 196 :GEASRLAVL 1uzbA 114 :RELEATLVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36532 # 1s2oA.196.163 read from T0506.t04.many.frag # found chain 1s2oA in training set Warning: unaligning (T0506)G196 (1s2oA)G164 because H (helix) conformation "forbidden" or filtered. T0506 197 :EASRLAVL 1s2oA 165 :NATQYLQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=36533 # 1za0A.196.110 read from T0506.t04.many.frag # found chain 1za0A in template set T0506 196 :GEASRLAVL 1za0A 111 :AIALREYLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36534 # 1y9iA.196.28 read from T0506.t04.many.frag # found chain 1y9iA in training set T0506 196 :GEASRLAVL 1y9iA 29 :AELVLFLQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36535 # 1fp3A.196.19 read from T0506.t04.many.frag # found chain 1fp3A in template set T0506 196 :GEASRLAVL 1fp3A 20 :DRVMAFWLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36536 # 1ztpA.196.143 read from T0506.t04.many.frag # found chain 1ztpA in template set T0506 196 :GEASRLAVL 1ztpA 144 :AGIARAVVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36537 # 1kwgA.196.576 read from T0506.t04.many.frag # found chain 1kwgA in training set T0506 196 :GEASRLAVL 1kwgA 577 :GRLLSALAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36538 1wu7A expands to /projects/compbio/data/pdb/1wu7.pdb.gz 1wu7A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1wu7A.196.242 read from T0506.t04.many.frag # adding 1wu7A to template set # found chain 1wu7A in template set T0506 196 :GEASRLAVL 1wu7A 243 :AAVEDLLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36539 # 1ezwA.196.307 read from T0506.t04.many.frag # found chain 1ezwA in training set T0506 196 :GEASRLAVL 1ezwA 308 :VDKIEELLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36540 # 1h4gA.196.159 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 196 :GEASRLAVL 1h4gA 160 :SNHFRAWEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36541 # 2d0oA.196.391 read from T0506.t04.many.frag # found chain 2d0oA in template set T0506 196 :GEASRLAVL 2d0oA 392 :AEAAILGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36542 # 1zvdA.196.300 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 196 :GEASRLAVL 1zvdA 669 :ARLLQFVTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36543 # 1n0qA.197.48 read from T0506.t04.many.frag # found chain 1n0qA in training set T0506 197 :EASRLAVLA 1n0qA 49 :EVVKLLLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36544 # 1k4iA.197.115 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 197 :EASRLAVLA 1k4iA 116 :LACRMLAAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36545 # 1t0qB.197.297 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 197 :EASRLAVLA 1t0qB 298 :KAIEAYCSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36546 # 1l8bA.197.104 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)A205 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0506 197 :EASRLAVL 1l8bA 132 :ETLLCLIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36547 # 1hf2A.197.60 read from T0506.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)A205 (1hf2A)L69 because G (3-10) conformation "forbidden" or filtered. T0506 197 :EASRLAVL 1hf2A 61 :RIVSHLRN Number of specific fragments extracted= 1 number of extra gaps= 1 total=36548 # 1ikpA.197.292 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 197 :EASRLAVLA 1ikpA 293 :RLVALYLAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36549 # 1iq4A.197.97 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 197 :EASRLAVLA 1iq4A 98 :EFLDKLISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36550 # 1yiiA.197.149 read from T0506.t04.many.frag # found chain 1yiiA in training set T0506 197 :EASRLAVLA 1yiiA 151 :RLLVVLLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36551 # 1h4gA.197.160 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 197 :EASRLAVLA 1h4gA 161 :NHFRAWENL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36552 # 1wu7A.197.243 read from T0506.t04.many.frag # found chain 1wu7A in template set T0506 197 :EASRLAVLA 1wu7A 244 :AVEDLLASY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36553 # 1lycA.197.273 read from T0506.t04.many.frag # found chain 1lycA in training set Warning: unaligning (T0506)A205 (1lycA)L282 because P (beta_P) conformation "forbidden" or filtered. T0506 197 :EASRLAVL 1lycA 274 :AAMAKMSV Number of specific fragments extracted= 1 number of extra gaps= 1 total=36554 # 1i24A.197.282 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. T0506 197 :EASRLAVL 1i24A 273 :QCVEIAIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36555 # 1szwA.197.305 read from T0506.t04.many.frag # found chain 1szwA in template set T0506 197 :EASRLAVLA 1szwA 284 :ELQALLVRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36556 1vkwA expands to /projects/compbio/data/pdb/1vkw.pdb.gz 1vkwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1vkwA.197.146 read from T0506.t04.many.frag # adding 1vkwA to template set # found chain 1vkwA in template set T0506 197 :EASRLAVLA 1vkwA 135 :KIVEMTILA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36557 # 1ezwA.197.308 read from T0506.t04.many.frag # found chain 1ezwA in training set T0506 197 :EASRLAVLA 1ezwA 309 :DKIEELLKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36558 # 1mw9X.197.498 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 197 :EASRLAVLA 1mw9X 499 :SIISTIQDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36559 # 2d0oA.197.392 read from T0506.t04.many.frag # found chain 2d0oA in template set T0506 197 :EASRLAVLA 2d0oA 393 :EAAILGALT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36560 # 1kpsB.197.75 read from T0506.t04.many.frag # found chain 1kpsB in template set T0506 197 :EASRLAVLA 1kpsB 494 :DAIDALMKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36561 # 1r1tA.197.49 read from T0506.t04.many.frag # found chain 1r1tA in training set Warning: unaligning (T0506)A205 (1r1tA)S58 because Y (epsilon') conformation "forbidden" or filtered. T0506 197 :EASRLAVL 1r1tA 50 :RLLSLLAR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36562 # 1ikpA.197.444 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 197 :EASRLAVLA 1ikpA 445 :EAAQSIVFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36563 # 1p7tA.197.690 read from T0506.t04.many.frag # found chain 1p7tA in template set T0506 197 :EASRLAVLA 1p7tA 691 :KAASDLIFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36564 # 1j2rA.197.147 read from T0506.t04.many.frag # found chain 1j2rA in training set T0506 197 :EASRLAVLA 1j2rA 148 :STARNAWEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36565 # 1rloA.197.193 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 197 :EASRLAVLA 1rloA 194 :NGISRLLKR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36566 # 1dqaA.197.333 read from T0506.t04.many.frag # found chain 1dqaA in template set T0506 197 :EASRLAVLA 1dqaA 755 :NIVTAIYIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36567 # 1dp4A.197.220 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 197 :EASRLAVLA 1dp4A 221 :NLMLLALNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36568 # 2baa.197.216 read from T0506.t04.many.frag # found chain 2baa in training set T0506 197 :EASRLAVLA 2baa 217 :GFYKRYCDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36569 # 1yb0A.197.109 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 197 :EASRLAVLA 1yb0A 110 :DVVRQLMSM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36570 # 1qgiA.197.229 read from T0506.t04.many.frag # found chain 1qgiA in training set T0506 197 :EASRLAVLA 1qgiA 230 :KQWDTLVDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36571 # 1ta8A.197.241 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 197 :EASRLAVLA 1ta8A 242 :EALEELSAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36572 1t0fA expands to /projects/compbio/data/pdb/1t0f.pdb.gz 1t0fA:# 1t0fA.197.232 read from T0506.t04.many.frag # adding 1t0fA to template set # found chain 1t0fA in template set T0506 197 :EASRLAVLA 1t0fA 230 :SEIRALTAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36573 # 1n0qA.198.49 read from T0506.t04.many.frag # found chain 1n0qA in training set T0506 198 :ASRLAVLAG 1n0qA 50 :VVKLLLEAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36574 # 1k4iA.198.116 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 198 :ASRLAVLAG 1k4iA 117 :ACRMLAAPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36575 # 1l8bA.198.105 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)A205 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0506 198 :ASRLAVL 1l8bA 133 :TLLCLIG T0506 206 :G 1l8bA 141 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=36577 # 1hf2A.198.61 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 198 :ASRLAVLAG 1hf2A 62 :IVSHLRNLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36578 # 1ikpA.198.293 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 198 :ASRLAVLAG 1ikpA 294 :LVALYLAAR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36579 # 1t0qB.198.298 read from T0506.t04.many.frag # found chain 1t0qB in template set Warning: unaligning (T0506)G206 (1t0qB)L307 because P (beta_P) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1t0qB 299 :AIEAYCSA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36580 # 1yiiA.198.150 read from T0506.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0506)G206 (1yiiA)N160 because G (3-10) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1yiiA 152 :LLVVLLQA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36581 # 1iq4A.198.98 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 198 :ASRLAVLAG 1iq4A 99 :FLDKLISVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36582 # 1h4gA.198.161 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 198 :ASRLAVLAG 1h4gA 162 :HFRAWENLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36583 # 2d0oA.198.393 read from T0506.t04.many.frag # found chain 2d0oA in template set Warning: unaligning (T0506)G206 (2d0oA)T402 because P (beta_P) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 2d0oA 394 :AAILGALT Number of specific fragments extracted= 1 number of extra gaps= 1 total=36584 # 1lycA.198.274 read from T0506.t04.many.frag # found chain 1lycA in training set T0506 198 :ASRLAVLAG 1lycA 275 :AMAKMSVLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36585 # 1i24A.198.283 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. T0506 198 :ASRLAVL 1i24A 274 :CVEIAIA T0506 206 :G 1i24A 282 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=36587 # 1szwA.198.306 read from T0506.t04.many.frag # found chain 1szwA in template set T0506 198 :ASRLAVLAG 1szwA 285 :LQALLVREK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36588 # 1ezwA.198.309 read from T0506.t04.many.frag # found chain 1ezwA in training set T0506 198 :ASRLAVLAG 1ezwA 310 :KIEELLKAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36589 # 1ikpA.198.445 read from T0506.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)G206 (1ikpA)G454 because S (epsilon) conformation "forbidden" or filtered. T0506 198 :ASRLAVLA 1ikpA 446 :AAQSIVFG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36590 # 1vkwA.198.147 read from T0506.t04.many.frag # found chain 1vkwA in template set Warning: unaligning (T0506)A205 (1vkwA)A143 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1vkwA)P144 because P (beta_P) conformation "forbidden" or filtered. T0506 198 :ASRLAVL 1vkwA 136 :IVEMTIL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36591 # 1dp4A.198.221 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 198 :ASRLAVLAG 1dp4A 222 :LMLLALNAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36592 # 1eyeA.198.239 read from T0506.t04.many.frag # found chain 1eyeA in training set T0506 198 :ASRLAVLAG 1eyeA 240 :ISALAALHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36593 # 1nrzA.198.87 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 198 :ASRLAVLAG 1nrzA 89 :DVLTMVRQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36594 1tvlA expands to /projects/compbio/data/pdb/1tvl.pdb.gz 1tvlA:# 1tvlA.198.252 read from T0506.t04.many.frag # adding 1tvlA to template set # found chain 1tvlA in template set T0506 198 :ASRLAVLAG 1tvlA 251 :VKSRAADEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36595 # 1wu7A.198.244 read from T0506.t04.many.frag # found chain 1wu7A in template set T0506 198 :ASRLAVLAG 1wu7A 245 :VEDLLASYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36596 # 1p7tA.198.691 read from T0506.t04.many.frag # found chain 1p7tA in template set T0506 198 :ASRLAVLAG 1p7tA 692 :AASDLIFLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36597 # 1mw9X.198.499 read from T0506.t04.many.frag # found chain 1mw9X in training set T0506 198 :ASRLAVLAG 1mw9X 500 :IISTIQDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36598 # 1qgiA.198.230 read from T0506.t04.many.frag # found chain 1qgiA in training set T0506 198 :ASRLAVLAG 1qgiA 231 :QWDTLVDMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36599 # 1vjoA.198.306 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 198 :ASRLAVLAG 1vjoA 295 :LWERLEDIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36600 # 1vb3A.198.355 read from T0506.t04.many.frag # found chain 1vb3A in template set T0506 198 :ASRLAVLAG 1vb3A 356 :VAYRALRDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36601 # 1ta8A.198.242 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 198 :ASRLAVLAG 1ta8A 243 :ALEELSAIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36602 # 1i0dA.198.178 read from T0506.t04.many.frag # found chain 1i0dA in training set T0506 198 :ASRLAVLAG 1i0dA 212 :QAAIFESEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36603 # 1j2rA.198.148 read from T0506.t04.many.frag # found chain 1j2rA in training set T0506 198 :ASRLAVLAG 1j2rA 149 :TARNAWELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36604 # 1onwA.198.265 read from T0506.t04.many.frag # found chain 1onwA in training set T0506 198 :ASRLAVLAG 1onwA 266 :GIARAVQAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36605 # 1n0qA.199.50 read from T0506.t04.many.frag # found chain 1n0qA in training set T0506 199 :SRLAVLAGA 1n0qA 51 :VKLLLEAGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36606 # 1hf2A.199.62 read from T0506.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)A207 (1hf2A)L71 because E (beta_S) conformation "forbidden" or filtered. T0506 199 :SRLAVLAG 1hf2A 63 :VSHLRNLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36607 # 1ikpA.199.294 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 199 :SRLAVLAGA 1ikpA 295 :VALYLAARL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36608 # 1l8bA.199.106 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)A205 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. T0506 199 :SRLAVL 1l8bA 134 :LLCLIG T0506 206 :GA 1l8bA 141 :SF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36610 # 1h4gA.199.162 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 199 :SRLAVLAGA 1h4gA 163 :FRAWENLGM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36611 # 1k4iA.199.117 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 199 :SRLAVLAGA 1k4iA 118 :CRMLAAPDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36612 # 1tvlA.199.253 read from T0506.t04.many.frag # found chain 1tvlA in template set Warning: unaligning (T0506)A205 (1tvlA)E258 because G (3-10) conformation "forbidden" or filtered. T0506 199 :SRLAVL 1tvlA 252 :KSRAAD T0506 206 :GA 1tvlA 259 :GR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36614 # 1lycA.199.275 read from T0506.t04.many.frag # found chain 1lycA in training set T0506 199 :SRLAVLAGA 1lycA 276 :MAKMSVLGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36615 # 1dp4A.199.222 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 199 :SRLAVLAGA 1dp4A 223 :MLLALNAGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36616 # 1nrzA.199.88 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 199 :SRLAVLAGA 1nrzA 90 :VLTMVRQGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36617 # 1vb3A.199.356 read from T0506.t04.many.frag # found chain 1vb3A in template set T0506 199 :SRLAVLAGA 1vb3A 357 :AYRALRDQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36618 # 1i24A.199.284 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. T0506 199 :SRLAVL 1i24A 275 :VEIAIA T0506 207 :A 1i24A 283 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=36620 # 1yiiA.199.151 read from T0506.t04.many.frag # found chain 1yiiA in training set Warning: unaligning (T0506)G206 (1yiiA)N160 because G (3-10) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1yiiA 153 :LVVLLQA T0506 207 :A 1yiiA 161 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=36622 # 2d0oA.199.394 read from T0506.t04.many.frag # found chain 2d0oA in template set T0506 199 :SRLAVLAGA 2d0oA 395 :AILGALTTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36623 # 1ikpA.199.446 read from T0506.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)G206 (1ikpA)G454 because S (epsilon) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1ikpA 447 :AQSIVFG T0506 207 :A 1ikpA 455 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36625 # 1i0dA.199.179 read from T0506.t04.many.frag # found chain 1i0dA in training set T0506 199 :SRLAVLAGA 1i0dA 213 :AAIFESEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36626 # 1t0qB.199.299 read from T0506.t04.many.frag # found chain 1t0qB in template set T0506 199 :SRLAVLAGA 1t0qB 300 :IEAYCSALP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36627 # 1ezwA.199.310 read from T0506.t04.many.frag # found chain 1ezwA in training set T0506 199 :SRLAVLAGA 1ezwA 311 :IEELLKAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36628 # 1szwA.199.307 read from T0506.t04.many.frag # found chain 1szwA in template set T0506 199 :SRLAVLAGA 1szwA 286 :QALLVREKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36629 # 1f74A.199.254 read from T0506.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)A205 (1f74A)E261 because G (3-10) conformation "forbidden" or filtered. T0506 199 :SRLAVL 1f74A 255 :KELLKL T0506 206 :GA 1f74A 262 :GV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36631 # 1vjoA.199.307 read from T0506.t04.many.frag # found chain 1vjoA in training set T0506 199 :SRLAVLAGA 1vjoA 296 :WERLEDIGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36632 # 1jr2A.199.249 read from T0506.t04.many.frag # found chain 1jr2A in template set T0506 199 :SRLAVLAGA 1jr2A 229 :ARALAAQGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36633 # 1fpoA.199.68 read from T0506.t04.many.frag # found chain 1fpoA in training set T0506 199 :SRLAVLAGA 1fpoA 69 :EYLLSLHGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36634 # 1iq4A.199.99 read from T0506.t04.many.frag # found chain 1iq4A in training set T0506 199 :SRLAVLAGA 1iq4A 100 :LDKLISVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36635 # 1vkwA.199.148 read from T0506.t04.many.frag # found chain 1vkwA in template set Warning: unaligning (T0506)G206 (1vkwA)P144 because P (beta_P) conformation "forbidden" or filtered. T0506 199 :SRLAVLA 1vkwA 137 :VEMTILA T0506 207 :A 1vkwA 145 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=36637 # 1hf8A.199.250 read from T0506.t04.many.frag # found chain 1hf8A in template set T0506 199 :SRLAVLAGA 1hf8A 251 :LKVAEQVGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36638 # 1ta8A.199.243 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 199 :SRLAVLAGA 1ta8A 244 :LEELSAIGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36639 # 1eyeA.199.240 read from T0506.t04.many.frag # found chain 1eyeA in training set T0506 199 :SRLAVLAGA 1eyeA 241 :SALAALHGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36640 # 1onwA.199.266 read from T0506.t04.many.frag # found chain 1onwA in training set T0506 199 :SRLAVLAGA 1onwA 267 :IARAVQAGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36641 # 1t0fA.199.234 read from T0506.t04.many.frag # found chain 1t0fA in template set T0506 199 :SRLAVLAGA 1t0fA 232 :IRALTANGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36642 # 1hf2A.200.63 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 200 :RLAVLAGAK 1hf2A 64 :SHLRNLGLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36643 # 1nrzA.200.89 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 200 :RLAVLAGAK 1nrzA 91 :LTMVRQGVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36644 # 1tvlA.200.254 read from T0506.t04.many.frag # found chain 1tvlA in template set T0506 200 :RLAVLAGAK 1tvlA 253 :SRAADEGRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36645 # 1h4gA.200.163 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 200 :RLAVLAGAK 1h4gA 164 :RAWENLGMN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36646 # 1n0qA.200.51 read from T0506.t04.many.frag # found chain 1n0qA in training set Warning: unaligning (T0506)A207 (1n0qA)A59 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVLAG 1n0qA 52 :KLLLEAG T0506 208 :K 1n0qA 60 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=36648 # 1dp4A.200.223 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 200 :RLAVLAGAK 1dp4A 224 :LLALNAGLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36649 # 1lfpA.200.184 read from T0506.t04.many.frag # found chain 1lfpA in training set T0506 200 :RLAVLAGAK 1lfpA 185 :ENLEKLGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36650 # 1ikpA.200.295 read from T0506.t04.many.frag # found chain 1ikpA in training set Warning: unaligning (T0506)A207 (1ikpA)L303 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVLAG 1ikpA 296 :ALYLAAR T0506 208 :K 1ikpA 304 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=36652 # 1k4iA.200.118 read from T0506.t04.many.frag # found chain 1k4iA in training set Warning: unaligning (T0506)G206 (1k4iA)D125 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1k4iA)A126 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVLA 1k4iA 119 :RMLAAP T0506 208 :K 1k4iA 127 :Q Number of specific fragments extracted= 2 number of extra gaps= 1 total=36654 # 1lycA.200.276 read from T0506.t04.many.frag # found chain 1lycA in training set Warning: unaligning (T0506)A207 (1lycA)F284 because E (beta_S) conformation "forbidden" or filtered. T0506 200 :RLAVLAG 1lycA 277 :AKMSVLG T0506 208 :K 1lycA 285 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=36656 # 1i24A.200.285 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1i24A)K284 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVL 1i24A 276 :EIAIA T0506 207 :A 1i24A 283 :A Number of specific fragments extracted= 2 number of extra gaps= 2 total=36658 # 1vb3A.200.357 read from T0506.t04.many.frag # found chain 1vb3A in template set T0506 200 :RLAVLAGAK 1vb3A 358 :YRALRDQLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36659 # 1fpoA.200.69 read from T0506.t04.many.frag # found chain 1fpoA in training set T0506 200 :RLAVLAGAK 1fpoA 70 :YLLSLHGFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36660 # 1jr2A.200.250 read from T0506.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0506)K208 (1jr2A)P238 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVLAGA 1jr2A 230 :RALAAQGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36661 # 1f74A.200.255 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 200 :RLAVLAGAK 1f74A 256 :ELLKLEGVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36662 # 2fckA.200.122 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. T0506 200 :RLAVLAGA 2fckA 120 :ILFCFERL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36663 # 1ctt.200.244 read from T0506.t04.many.frag # found chain 1ctt in template set Warning: unaligning (T0506)A207 (1ctt)Y252 because P (beta_P) conformation "forbidden" or filtered. T0506 200 :RLAVLAG 1ctt 245 :ILLNLKG T0506 208 :K 1ctt 253 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=36665 # 1ikpA.200.447 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 200 :RLAVLAGAK 1ikpA 448 :QSIVFGGVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36666 # 1vjoA.200.308 read from T0506.t04.many.frag # found chain 1vjoA in training set Warning: unaligning (T0506)A205 (1vjoA)I302 because G (3-10) conformation "forbidden" or filtered. T0506 200 :RLAVL 1vjoA 297 :ERLED T0506 206 :GAK 1vjoA 303 :GLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36668 # 1i0dA.200.180 read from T0506.t04.many.frag # found chain 1i0dA in training set T0506 200 :RLAVLAGAK 1i0dA 214 :AIFESEGLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36669 # 1hf8A.200.251 read from T0506.t04.many.frag # found chain 1hf8A in template set T0506 200 :RLAVLAGAK 1hf8A 252 :KVAEQVGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=36670 # 1zp4A.200.261 read from T0506.t04.many.frag # found chain 1zp4A in template set T0506 200 :RLAVLAGAK 1zp4A 262 :KILSREGVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36671 # 1l8bA.200.107 read from T0506.t04.many.frag # found chain 1l8bA in training set Warning: unaligning (T0506)A205 (1l8bA)E140 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1l8bA)D143 because S (epsilon) conformation "forbidden" or filtered. T0506 200 :RLAVL 1l8bA 135 :LCLIG T0506 206 :GA 1l8bA 141 :SF Number of specific fragments extracted= 2 number of extra gaps= 2 total=36673 # 1onwA.200.267 read from T0506.t04.many.frag # found chain 1onwA in training set T0506 200 :RLAVLAGAK 1onwA 268 :ARAVQAGIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36674 # 2bmfA.200.380 read from T0506.t04.many.frag # found chain 2bmfA in template set T0506 200 :RLAVLAGAK 2bmfA 548 :YRVAAEGIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36675 # 1jr2A.200.125 read from T0506.t04.many.frag # found chain 1jr2A in template set Warning: unaligning (T0506)A207 because of BadResidue code BAD_PEPTIDE in next template residue (1jr2A)D113 Warning: unaligning (T0506)K208 because of BadResidue code BAD_PEPTIDE at template residue (1jr2A)D113 T0506 200 :RLAVLAG 1jr2A 105 :SLVSKIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36676 1yxyA expands to /projects/compbio/data/pdb/1yxy.pdb.gz 1yxyA:# 1yxyA.200.179 read from T0506.t04.many.frag # adding 1yxyA to template set # found chain 1yxyA in template set T0506 200 :RLAVLAGAK 1yxyA 180 :EALCKAGIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36677 # 1ezwA.200.311 read from T0506.t04.many.frag # found chain 1ezwA in training set Warning: unaligning (T0506)K208 (1ezwA)T320 because G (3-10) conformation "forbidden" or filtered. T0506 200 :RLAVLAGA 1ezwA 312 :EELLKAGV Number of specific fragments extracted= 1 number of extra gaps= 1 total=36678 # 1vioA.200.189 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)A205 (1vioA)L193 because G (3-10) conformation "forbidden" or filtered. T0506 200 :RLAVL 1vioA 188 :RMFAA T0506 206 :GAK 1vioA 194 :GNK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36680 # 1r1mA.200.76 read from T0506.t04.many.frag # found chain 1r1mA in template set T0506 200 :RLAVLAGAK 1r1mA 141 :NNLVSNGVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36681 # 1tvlA.201.255 read from T0506.t04.many.frag # found chain 1tvlA in template set Warning: unaligning (T0506)A205 (1tvlA)E258 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1tvlA)D261 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVL 1tvlA 254 :RAAD T0506 206 :GA 1tvlA 259 :GR T0506 209 :T 1tvlA 262 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=36684 # 1nrzA.201.90 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 201 :LAVLAGAKT 1nrzA 92 :TMVRQGVQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36685 # 1dp4A.201.224 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 201 :LAVLAGAKT 1dp4A 225 :LALNAGLTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36686 # 1hf2A.201.64 read from T0506.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)A207 (1hf2A)L71 because E (beta_S) conformation "forbidden" or filtered. T0506 201 :LAVLAG 1hf2A 65 :HLRNLG T0506 208 :KT 1hf2A 72 :EV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36688 # 1h4gA.201.164 read from T0506.t04.many.frag # found chain 1h4gA in training set Warning: unaligning (T0506)A205 (1h4gA)L169 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVL 1h4gA 165 :AWEN T0506 206 :GAKT 1h4gA 170 :GMNM Number of specific fragments extracted= 2 number of extra gaps= 1 total=36690 # 1lfpA.201.185 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)K208 (1lfpA)P193 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLAGA 1lfpA 186 :NLEKLGV T0506 209 :T 1lfpA 194 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=36692 # 1ikpA.201.296 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 201 :LAVLAGAKT 1ikpA 297 :LYLAARLSW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36693 # 1lycA.201.277 read from T0506.t04.many.frag # found chain 1lycA in training set T0506 201 :LAVLAGAKT 1lycA 278 :KMSVLGFDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36694 # 1hf8A.201.252 read from T0506.t04.many.frag # found chain 1hf8A in template set T0506 201 :LAVLAGAKT 1hf8A 253 :VAEQVGIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36695 # 1fpoA.201.70 read from T0506.t04.many.frag # found chain 1fpoA in training set T0506 201 :LAVLAGAKT 1fpoA 71 :LLSLHGFDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36696 # 1vioA.201.190 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)A207 (1vioA)N195 because E (beta_S) conformation "forbidden" or filtered. T0506 201 :LAVLAG 1vioA 189 :MFAALG T0506 208 :KT 1vioA 196 :KV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36698 # 1f74A.201.256 read from T0506.t04.many.frag # found chain 1f74A in training set T0506 201 :LAVLAGAKT 1f74A 257 :LLKLEGVDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36699 # 8abp.201.214 read from T0506.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A207 (8abp)F221 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (8abp)K222 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLAG 8abp 215 :ATEGQG T0506 209 :T 8abp 223 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=36701 # 1n0qA.201.52 read from T0506.t04.many.frag # found chain 1n0qA in training set T0506 201 :LAVLAGAKT 1n0qA 53 :LLLEAGADV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36702 # 2bmfA.201.381 read from T0506.t04.many.frag # found chain 2bmfA in template set T0506 201 :LAVLAGAKT 2bmfA 549 :RVAAEGINY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36703 # 1ctt.201.245 read from T0506.t04.many.frag # found chain 1ctt in template set T0506 201 :LAVLAGAKT 1ctt 246 :LLNLKGYDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36704 # 1nzjA.201.203 read from T0506.t04.many.frag # found chain 1nzjA in training set T0506 201 :LAVLAGAKT 1nzjA 204 :LYQLFGWKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36705 # 1onwA.201.268 read from T0506.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)K208 (1onwA)P276 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLAGA 1onwA 269 :RAVQAGI T0506 209 :T 1onwA 277 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=36707 # 1jr2A.201.251 read from T0506.t04.many.frag # found chain 1jr2A in template set T0506 201 :LAVLAGAKT 1jr2A 231 :ALAAQGLPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36708 # 2bh1A.201.123 read from T0506.t04.many.frag # found chain 2bh1A in template set T0506 201 :LAVLAGAKT 2bh1A 124 :HLKACGFDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36709 # 1r1mA.201.77 read from T0506.t04.many.frag # found chain 1r1mA in template set T0506 201 :LAVLAGAKT 1r1mA 142 :NLVSNGVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36710 # 1sfsA.201.110 read from T0506.t04.many.frag # found chain 1sfsA in training set Warning: unaligning (T0506)V203 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1sfsA)R90 Warning: unaligning (T0506)L204 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1sfsA)R90 Warning: unaligning (T0506)T209 because of BadResidue code BAD_PEPTIDE in next template residue (1sfsA)N96 T0506 201 :LA 1sfsA 87 :HA T0506 205 :AGAK 1sfsA 91 :LGIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=36712 # 1i0dA.201.181 read from T0506.t04.many.frag # found chain 1i0dA in training set T0506 201 :LAVLAGAKT 1i0dA 215 :IFESEGLSP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36713 # 1vb3A.201.358 read from T0506.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)A205 (1vb3A)D363 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1vb3A)N366 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVL 1vb3A 359 :RALR T0506 206 :GA 1vb3A 364 :QL T0506 209 :T 1vb3A 367 :P Number of specific fragments extracted= 3 number of extra gaps= 2 total=36716 # 1k4iA.201.119 read from T0506.t04.many.frag # found chain 1k4iA in training set Warning: unaligning (T0506)G206 (1k4iA)D125 because G (3-10) conformation "forbidden" or filtered. T0506 201 :LAVLA 1k4iA 120 :MLAAP T0506 207 :AKT 1k4iA 126 :AQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=36718 # 2fckA.201.123 read from T0506.t04.many.frag # found chain 2fckA in template set T0506 201 :LAVLAGAKT 2fckA 121 :LFCFERLEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36719 # 1i24A.201.286 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1i24A)A283 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLA 1i24A 277 :IAIAN T0506 208 :KT 1i24A 284 :KA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36721 # 1qd1A.201.254 read from T0506.t04.many.frag # found chain 1qd1A in training set T0506 201 :LAVLAGAKT 1qd1A 256 :EAQELSLPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36722 # 1jftA.201.255 read from T0506.t04.many.frag # found chain 1jftA in template set T0506 201 :LAVLAGAKT 1jftA 257 :AADEMGLRV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36723 # 1iv3A.201.82 read from T0506.t04.many.frag # found chain 1iv3A in training set Warning: unaligning (T0506)A207 (1iv3A)A89 because P (beta_P) conformation "forbidden" or filtered. T0506 201 :LAVLAG 1iv3A 83 :LVEARG T0506 208 :KT 1iv3A 90 :KL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36725 # 1nrzA.202.91 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 202 :AVLAGAKTG 1nrzA 93 :MVRQGVQIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36726 # 1dp4A.202.225 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 202 :AVLAGAKTG 1dp4A 226 :ALNAGLTGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36727 # 1tvlA.202.256 read from T0506.t04.many.frag # found chain 1tvlA in template set Warning: unaligning (T0506)A205 (1tvlA)E258 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVL 1tvlA 255 :AAD T0506 206 :GAKTG 1tvlA 259 :GRDPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36729 # 8abp.202.215 read from T0506.t04.many.frag # found chain 8abp in training set T0506 202 :AVLAGAKTG 8abp 216 :TEGQGFKAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36730 # 1lam.202.434 read from T0506.t04.many.frag # found chain 1lam in training set T0506 202 :AVLAGAKTG 1lam 435 :FLKEFVTHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36731 # 1h4gA.202.165 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 202 :AVLAGAKTG 1h4gA 166 :WENLGMNMG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36732 # 1lycA.202.278 read from T0506.t04.many.frag # found chain 1lycA in training set Warning: unaligning (T0506)K208 (1lycA)D285 because E (beta_S) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1lycA 279 :MSVLGF T0506 209 :TG 1lycA 286 :RN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36734 # 1hf2A.202.65 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 202 :AVLAGAKTG 1hf2A 66 :LRNLGLEVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36735 # 1hf8A.202.253 read from T0506.t04.many.frag # found chain 1hf8A in template set T0506 202 :AVLAGAKTG 1hf8A 254 :AEQVGIDRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36736 # 1yb0A.202.115 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 202 :AVLAGAKTG 1yb0A 116 :MSMYNIPIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36737 # 1nzjA.202.204 read from T0506.t04.many.frag # found chain 1nzjA in training set Warning: unaligning (T0506)G210 (1nzjA)P213 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAGAKT 1nzjA 205 :YQLFGWKV Number of specific fragments extracted= 1 number of extra gaps= 1 total=36738 # 1vioA.202.191 read from T0506.t04.many.frag # found chain 1vioA in training set T0506 202 :AVLAGAKTG 1vioA 190 :FAALGNKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36739 # 1ikpA.202.297 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 202 :AVLAGAKTG 1ikpA 298 :YLAARLSWN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36740 # 1lfpA.202.186 read from T0506.t04.many.frag # found chain 1lfpA in training set T0506 202 :AVLAGAKTG 1lfpA 187 :LEKLGVPIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36741 # 1i24A.202.287 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1i24A)A283 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVL 1i24A 278 :AIA T0506 208 :KTG 1i24A 284 :KAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36743 # 1m4tA.202.299 read from T0506.t04.many.frag # found chain 1m4tA in template set Warning: unaligning (T0506)K208 (1m4tA)K306 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1m4tA 300 :LERAGW T0506 209 :TG 1m4tA 307 :IG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36745 # 1ctt.202.246 read from T0506.t04.many.frag # found chain 1ctt in template set T0506 202 :AVLAGAKTG 1ctt 247 :LNLKGYDYP Number of specific fragments extracted= 1 number of extra gaps= 0 total=36746 # 2fckA.202.124 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. T0506 202 :AVLAGA 2fckA 122 :FCFERL T0506 209 :TG 2fckA 129 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36748 # 1onwA.202.269 read from T0506.t04.many.frag # found chain 1onwA in training set T0506 202 :AVLAGAKTG 1onwA 270 :AVQAGIPLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36749 # 1vb3A.202.359 read from T0506.t04.many.frag # found chain 1vb3A in template set Warning: unaligning (T0506)G206 (1vb3A)Q364 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1vb3A)N366 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLA 1vb3A 360 :ALRD T0506 207 :A 1vb3A 365 :L T0506 209 :TG 1vb3A 367 :PG Number of specific fragments extracted= 3 number of extra gaps= 2 total=36752 # 1sfsA.202.111 read from T0506.t04.many.frag # found chain 1sfsA in training set Warning: unaligning (T0506)V203 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1sfsA)R90 Warning: unaligning (T0506)L204 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1sfsA)R90 Warning: unaligning (T0506)A205 (1sfsA)L91 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)T209 because of BadResidue code BAD_PEPTIDE in next template residue (1sfsA)N96 Warning: unaligning (T0506)G210 because of BadResidue code BAD_PEPTIDE at template residue (1sfsA)N96 T0506 202 :A 1sfsA 88 :A T0506 206 :GAK 1sfsA 92 :GIP Number of specific fragments extracted= 2 number of extra gaps= 2 total=36754 # 1qd1A.202.255 read from T0506.t04.many.frag # found chain 1qd1A in training set T0506 202 :AVLAGAKTG 1qd1A 257 :AQELSLPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36755 # 1rloA.202.199 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 202 :AVLAGAKTG 1rloA 200 :LKRWDLSPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36756 # 1l6rA.202.161 read from T0506.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)K208 (1l6rA)E165 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1l6rA 159 :KEMYSL T0506 209 :TG 1l6rA 166 :YD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36758 # 1r1mA.202.78 read from T0506.t04.many.frag # found chain 1r1mA in template set T0506 202 :AVLAGAKTG 1r1mA 143 :LVSNGVPVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36759 # 1f74A.202.257 read from T0506.t04.many.frag # found chain 1f74A in training set Warning: unaligning (T0506)A207 (1f74A)V263 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAG 1f74A 258 :LKLEG T0506 208 :KTG 1f74A 264 :DAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36761 1xpkC expands to /projects/compbio/data/pdb/1xpk.pdb.gz 1xpkC:Skipped atom 8010, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8012, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8014, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8016, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8018, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8020, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8022, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8024, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8026, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8028, because occupancy 0.500 <= existing 0.500 in 1xpkC Skipped atom 8030, because occupancy 0.500 <= existing 0.500 in 1xpkC # 1xpkC.202.288 read from T0506.t04.many.frag # adding 1xpkC to template set # found chain 1xpkC in template set Warning: unaligning (T0506)G206 (1xpkC)D293 because G (3-10) conformation "forbidden" or filtered. T0506 202 :AVLA 1xpkC 289 :LENR T0506 207 :AKTG 1xpkC 294 :LQAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36763 # 1k4iA.202.120 read from T0506.t04.many.frag # found chain 1k4iA in training set T0506 202 :AVLAGAKTG 1k4iA 121 :LAAPDAQPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36764 # 1fpoA.202.71 read from T0506.t04.many.frag # found chain 1fpoA in training set T0506 202 :AVLAGAKTG 1fpoA 72 :LSLHGFDLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36765 1y7tA expands to /projects/compbio/data/pdb/1y7t.pdb.gz 1y7tA:# 1y7tA.202.250 read from T0506.t04.many.frag # adding 1y7tA to template set # found chain 1y7tA in template set Warning: unaligning (T0506)K208 (1y7tA)P261 because P (beta_P) conformation "forbidden" or filtered. T0506 202 :AVLAGA 1y7tA 255 :DWALGT T0506 209 :TG 1y7tA 262 :EG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36767 # 1nrzA.203.92 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 203 :VLAGAKTGR 1nrzA 94 :VRQGVQIAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36768 # 1yb0A.203.116 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 203 :VLAGAKTGR 1yb0A 117 :SMYNIPIEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36769 # 1lam.203.435 read from T0506.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0506)G206 (1lam)F439 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLA 1lam 436 :LKE T0506 207 :AKTGR 1lam 440 :VTHPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36771 # 1dp4A.203.226 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 203 :VLAGAKTGR 1dp4A 227 :LNAGLTGED Number of specific fragments extracted= 1 number of extra gaps= 0 total=36772 # 8abp.203.216 read from T0506.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0506)K208 (8abp)K222 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VLAGA 8abp 217 :EGQGF T0506 209 :TGR 8abp 223 :AAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36774 # 1m4tA.203.300 read from T0506.t04.many.frag # found chain 1m4tA in template set Warning: unaligning (T0506)K208 (1m4tA)K306 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VLAGA 1m4tA 301 :ERAGW T0506 209 :TGR 1m4tA 307 :IGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36776 # 1vioA.203.192 read from T0506.t04.many.frag # found chain 1vioA in training set T0506 203 :VLAGAKTGR 1vioA 191 :AALGNKVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36777 # 1lycA.203.279 read from T0506.t04.many.frag # found chain 1lycA in training set T0506 203 :VLAGAKTGR 1lycA 280 :SVLGFDRNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36778 # 1h4gA.203.166 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 203 :VLAGAKTGR 1h4gA 167 :ENLGMNMGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36779 # 1rloA.203.200 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 203 :VLAGAKTGR 1rloA 201 :KRWDLSPQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=36780 # 1hf2A.203.66 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 203 :VLAGAKTGR 1hf2A 67 :RNLGLEVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36781 # 1nzjA.203.205 read from T0506.t04.many.frag # found chain 1nzjA in training set Warning: unaligning (T0506)G210 (1nzjA)P213 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VLAGAKT 1nzjA 206 :QLFGWKV T0506 211 :R 1nzjA 214 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=36783 # 1tvlA.203.257 read from T0506.t04.many.frag # found chain 1tvlA in template set Warning: unaligning (T0506)R211 (1tvlA)S264 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLAGAKTG 1tvlA 256 :ADEGRDPS Number of specific fragments extracted= 1 number of extra gaps= 1 total=36784 # 1l6rA.203.162 read from T0506.t04.many.frag # found chain 1l6rA in training set T0506 203 :VLAGAKTGR 1l6rA 160 :EMYSLEYDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36785 # 1y7tA.203.251 read from T0506.t04.many.frag # found chain 1y7tA in template set T0506 203 :VLAGAKTGR 1y7tA 256 :WALGTPEGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36786 # 1nnlA.203.120 read from T0506.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0506)A205 (1nnlA)L123 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VL 1nnlA 121 :SK T0506 206 :GAKTGR 1nnlA 124 :NIPATN Number of specific fragments extracted= 2 number of extra gaps= 1 total=36788 # 1i24A.203.288 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1i24A)A283 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1i24A)K284 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VLA 1i24A 279 :IAN T0506 209 :TGR 1i24A 285 :AGE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36790 # 1ikpA.203.298 read from T0506.t04.many.frag # found chain 1ikpA in training set T0506 203 :VLAGAKTGR 1ikpA 299 :LAARLSWNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36791 # 1hf8A.203.254 read from T0506.t04.many.frag # found chain 1hf8A in template set Warning: unaligning (T0506)G210 (1hf8A)G262 because H (helix) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1hf8A)D263 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLAGAKT 1hf8A 255 :EQVGIDR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36792 # 1onwA.203.270 read from T0506.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)A207 (1onwA)I275 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1onwA)P276 because P (beta_P) conformation "forbidden" or filtered. T0506 203 :VLAG 1onwA 271 :VQAG T0506 209 :TGR 1onwA 277 :LAR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36794 # 1ox0A.203.306 read from T0506.t04.many.frag # found chain 1ox0A in training set T0506 203 :VLAGAKTGR 1ox0A 288 :EEAEISPEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=36795 # 2fckA.203.125 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLAGA 2fckA 123 :CFERL T0506 209 :T 2fckA 129 :L T0506 211 :R 2fckA 131 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=36798 # 1qd1A.203.256 read from T0506.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)G210 (1qd1A)V265 because D (zeta) conformation "forbidden" or filtered. T0506 203 :VLAGAKT 1qd1A 258 :QELSLPV T0506 211 :R 1qd1A 266 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=36800 # 1lfpA.203.187 read from T0506.t04.many.frag # found chain 1lfpA in training set T0506 203 :VLAGAKTGR 1lfpA 188 :EKLGVPIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36801 # 1qu9A.203.61 read from T0506.t04.many.frag # found chain 1qu9A in training set Warning: unaligning (T0506)R211 (1qu9A)D70 because G (3-10) conformation "forbidden" or filtered. T0506 203 :VLAGAKTG 1qu9A 62 :EAAGLKVG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36802 # 2b8nA.203.345 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)K208 (2b8nA)G339 because T (delta_L) conformation "forbidden" or filtered. T0506 203 :VLAGA 2b8nA 334 :AIALE T0506 209 :TGR 2b8nA 340 :IEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36804 # 1o08A.203.155 read from T0506.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0506)A207 (1o08A)V1160 because E (beta_S) conformation "forbidden" or filtered. T0506 203 :VLAG 1o08A 1156 :HAVG T0506 208 :KTGR 1o08A 1161 :APSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36806 # 1fpoA.203.72 read from T0506.t04.many.frag # found chain 1fpoA in training set T0506 203 :VLAGAKTGR 1fpoA 73 :SLHGFDLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=36807 # 1ctt.203.247 read from T0506.t04.many.frag # found chain 1ctt in template set T0506 203 :VLAGAKTGR 1ctt 248 :NLKGYDYPD Number of specific fragments extracted= 1 number of extra gaps= 0 total=36808 # 1xpkC.203.289 read from T0506.t04.many.frag # found chain 1xpkC in template set T0506 203 :VLAGAKTGR 1xpkC 290 :ENRDLQAGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=36809 # 1yb0A.204.117 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 204 :LAGAKTGRW 1yb0A 118 :MYNIPIENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36810 # 1nrzA.204.93 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 204 :LAGAKTGRW 1nrzA 95 :RQGVQIATL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36811 # 1lam.204.436 read from T0506.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0506)G206 (1lam)F439 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LA 1lam 437 :KE T0506 207 :AKTGRW 1lam 440 :VTHPKW Number of specific fragments extracted= 2 number of extra gaps= 1 total=36813 # 8abp.204.217 read from T0506.t04.many.frag # found chain 8abp in training set T0506 204 :LAGAKTGRW 8abp 218 :GQGFKAADI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36814 # 1m4tA.204.301 read from T0506.t04.many.frag # found chain 1m4tA in template set T0506 204 :LAGAKTGRW 1m4tA 302 :RAGWKIGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36815 # 1dp4A.204.227 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 204 :LAGAKTGRW 1dp4A 228 :NAGLTGEDY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36816 # 1vioA.204.193 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)G210 (1vioA)V198 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LAGAKT 1vioA 192 :ALGNKV T0506 211 :RW 1vioA 199 :GL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36818 # 1rloA.204.201 read from T0506.t04.many.frag # found chain 1rloA in template set Warning: unaligning (T0506)A205 (1rloA)W203 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1rloA)S206 because E (beta_S) conformation "forbidden" or filtered. T0506 204 :L 1rloA 202 :R T0506 206 :GA 1rloA 204 :DL T0506 209 :TGRW 1rloA 207 :PQNV Number of specific fragments extracted= 3 number of extra gaps= 2 total=36821 # 1qu9A.204.62 read from T0506.t04.many.frag # found chain 1qu9A in training set Warning: unaligning (T0506)G210 (1qu9A)G69 because H (helix) conformation "forbidden" or filtered. T0506 204 :LAGAKT 1qu9A 63 :AAGLKV T0506 211 :RW 1qu9A 70 :DI Number of specific fragments extracted= 2 number of extra gaps= 1 total=36823 # 1l6rA.204.163 read from T0506.t04.many.frag # found chain 1l6rA in training set T0506 204 :LAGAKTGRW 1l6rA 161 :MYSLEYDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36824 # 1h4gA.204.167 read from T0506.t04.many.frag # found chain 1h4gA in training set Warning: unaligning (T0506)W212 (1h4gA)M176 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAGAKTGR 1h4gA 168 :NLGMNMGK Number of specific fragments extracted= 1 number of extra gaps= 1 total=36825 # 1ox0A.204.307 read from T0506.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0506)K208 (1ox0A)S293 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1ox0A)V297 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAGA 1ox0A 289 :EAEI T0506 209 :TGR 1ox0A 294 :PEQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=36827 # 1nnlA.204.121 read from T0506.t04.many.frag # found chain 1nnlA in training set T0506 204 :LAGAKTGRW 1nnlA 122 :KLNIPATNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36828 # 1lycA.204.280 read from T0506.t04.many.frag # found chain 1lycA in training set Warning: unaligning (T0506)K208 (1lycA)D285 because E (beta_S) conformation "forbidden" or filtered. T0506 204 :LAGA 1lycA 281 :VLGF T0506 209 :TGRW 1lycA 286 :RNAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36830 # 1o08A.204.156 read from T0506.t04.many.frag # found chain 1o08A in training set T0506 204 :LAGAKTGRW 1o08A 1157 :AVGVAPSES Number of specific fragments extracted= 1 number of extra gaps= 0 total=36831 # 1y7tA.204.252 read from T0506.t04.many.frag # found chain 1y7tA in template set T0506 204 :LAGAKTGRW 1y7tA 257 :ALGTPEGDW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36832 # 1hf2A.204.67 read from T0506.t04.many.frag # found chain 1hf2A in template set T0506 204 :LAGAKTGRW 1hf2A 68 :NLGLEVSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36833 # 1i24A.204.289 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. T0506 204 :L 1i24A 280 :A T0506 206 :GAKTGRW 1i24A 282 :PAKAGEF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36835 # 1qd1A.204.257 read from T0506.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)G210 (1qd1A)V265 because D (zeta) conformation "forbidden" or filtered. T0506 204 :LAGAKT 1qd1A 259 :ELSLPV T0506 211 :RW 1qd1A 266 :GS Number of specific fragments extracted= 2 number of extra gaps= 1 total=36837 # 1lfpA.204.188 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)A207 (1lfpA)V192 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAG 1lfpA 189 :KLG T0506 208 :KTGRW 1lfpA 193 :PIEKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36839 # 1qqqA.204.190 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)L204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qqqA)D193 Warning: unaligning (T0506)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)D193 T0506 207 :AKTGRW 1qqqA 194 :LEVGDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36840 # 1s2oA.204.172 read from T0506.t04.many.frag # found chain 1s2oA in training set Warning: unaligning (T0506)A205 (1s2oA)L174 because G (3-10) conformation "forbidden" or filtered. T0506 204 :L 1s2oA 173 :H T0506 206 :GAKTGRW 1s2oA 175 :AMEPSQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36842 # 2b8nA.204.346 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)G206 (2b8nA)L337 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2b8nA)E341 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LA 2b8nA 335 :IA T0506 207 :AKT 2b8nA 338 :EGI T0506 211 :RW 2b8nA 342 :GV Number of specific fragments extracted= 3 number of extra gaps= 2 total=36845 # 1nzjA.204.206 read from T0506.t04.many.frag # found chain 1nzjA in training set Warning: unaligning (T0506)K208 (1nzjA)K211 because P (beta_P) conformation "forbidden" or filtered. T0506 204 :LAGA 1nzjA 207 :LFGW T0506 209 :TGRW 1nzjA 212 :VPDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=36847 # 1tvlA.204.258 read from T0506.t04.many.frag # found chain 1tvlA in template set T0506 204 :LAGAKTGRW 1tvlA 257 :DEGRDPSSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36848 # 1onwA.204.271 read from T0506.t04.many.frag # found chain 1onwA in training set Warning: unaligning (T0506)K208 (1onwA)P276 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1onwA)R279 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LAGA 1onwA 272 :QAGI T0506 209 :TG 1onwA 277 :LA T0506 212 :W 1onwA 280 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=36851 1yzhA expands to /projects/compbio/data/pdb/1yzh.pdb.gz 1yzhA:Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 140, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 142, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 144, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 146, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 148, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 1yzhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 1yzhA Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 1yzhA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yzhA.204.170 read from T0506.t04.many.frag # adding 1yzhA to template set # found chain 1yzhA in template set T0506 204 :LAGAKTGRW 1yzhA 168 :QYGMKLNGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36852 # 1u2cA.204.157 read from T0506.t04.many.frag # found chain 1u2cA in template set T0506 204 :LAGAKTGRW 1u2cA 215 :FSEVELHNM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36853 # 2fckA.204.126 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2fckA)T130 because G (3-10) conformation "forbidden" or filtered. T0506 204 :LAGA 2fckA 124 :FERL T0506 209 :T 2fckA 129 :L T0506 211 :RW 2fckA 131 :RL Number of specific fragments extracted= 3 number of extra gaps= 2 total=36856 2bduA expands to /projects/compbio/data/pdb/2bdu.pdb.gz 2bduA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1944, because occupancy 0.350 <= existing 0.650 in 2bduA Skipped atom 1946, because occupancy 0.350 <= existing 0.650 in 2bduA Skipped atom 1948, because occupancy 0.350 <= existing 0.650 in 2bduA Skipped atom 1950, because occupancy 0.350 <= existing 0.650 in 2bduA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 2bduA.204.176 read from T0506.t04.many.frag # adding 2bduA to template set # found chain 2bduA in template set T0506 204 :LAGAKTGRW 2bduA 177 :QAGVYHSNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36857 # 1nrzA.205.94 read from T0506.t04.many.frag # found chain 1nrzA in training set Warning: unaligning (T0506)A205 (1nrzA)Q96 because G (3-10) conformation "forbidden" or filtered. T0506 206 :GAKTGRWK 1nrzA 97 :GVQIATLN Number of specific fragments extracted= 1 number of extra gaps= 1 total=36858 # 1yb0A.205.118 read from T0506.t04.many.frag # found chain 1yb0A in template set Warning: unaligning (T0506)K208 (1yb0A)P122 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AGA 1yb0A 119 :YNI T0506 209 :TGRWK 1yb0A 123 :IENVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=36860 # 1lam.205.437 read from T0506.t04.many.frag # found chain 1lam in training set T0506 205 :AGAKTGRWK 1lam 438 :EFVTHPKWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36861 # 1dp4A.205.228 read from T0506.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0506)R211 (1dp4A)D235 because G (3-10) conformation "forbidden" or filtered. T0506 205 :AGAKTG 1dp4A 229 :AGLTGE T0506 212 :WK 1dp4A 236 :YV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36863 # 1m4tA.205.302 read from T0506.t04.many.frag # found chain 1m4tA in template set Warning: unaligning (T0506)K208 (1m4tA)K306 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AGA 1m4tA 303 :AGW T0506 209 :TGRWK 1m4tA 307 :IGDLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=36865 # 8abp.205.218 read from T0506.t04.many.frag # found chain 8abp in training set Warning: unaligning (T0506)A207 (8abp)F221 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AG 8abp 219 :QG T0506 208 :KTGRWK 8abp 222 :KAADII Number of specific fragments extracted= 2 number of extra gaps= 1 total=36867 # 1vioA.205.194 read from T0506.t04.many.frag # found chain 1vioA in training set Warning: unaligning (T0506)K213 (1vioA)H201 because E (beta_S) conformation "forbidden" or filtered. T0506 205 :AGAKTGRW 1vioA 193 :LGNKVVGL Number of specific fragments extracted= 1 number of extra gaps= 1 total=36868 # 1rloA.205.202 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 205 :AGAKTGRWK 1rloA 203 :WDLSPQNVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36869 # 1u2cA.205.158 read from T0506.t04.many.frag # found chain 1u2cA in template set Warning: unaligning (T0506)K208 (1u2cA)E219 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AGA 1u2cA 216 :SEV T0506 209 :TGRWK 1u2cA 220 :LHNMK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36871 # 1i24A.205.290 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)A205 (1i24A)N281 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTGRWK 1i24A 283 :AKAGEFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36872 # 2fckA.205.127 read from T0506.t04.many.frag # found chain 2fckA in template set Warning: unaligning (T0506)K208 (2fckA)E128 because L (left) conformation "forbidden" or filtered. T0506 205 :AGA 2fckA 125 :ERL T0506 209 :TGRWK 2fckA 129 :LTRLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=36874 # 1qu9A.205.63 read from T0506.t04.many.frag # found chain 1qu9A in training set T0506 205 :AGAKTGRWK 1qu9A 64 :AGLKVGDIV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36875 # 1h4gA.205.168 read from T0506.t04.many.frag # found chain 1h4gA in training set T0506 205 :AGAKTGRWK 1h4gA 169 :LGMNMGKMY Number of specific fragments extracted= 1 number of extra gaps= 0 total=36876 # 1lfpA.205.189 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)K213 (1lfpA)Q198 because Y (epsilon') conformation "forbidden" or filtered. T0506 205 :AGAKTGRW 1lfpA 190 :LGVPIEKA Number of specific fragments extracted= 1 number of extra gaps= 1 total=36877 # 1ox0A.205.308 read from T0506.t04.many.frag # found chain 1ox0A in training set Warning: unaligning (T0506)K208 (1ox0A)S293 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AGA 1ox0A 290 :AEI T0506 209 :TGRWK 1ox0A 294 :PEQVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=36879 # 1l6rA.205.164 read from T0506.t04.many.frag # found chain 1l6rA in training set T0506 205 :AGAKTGRWK 1l6rA 162 :YSLEYDEIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36880 # 1qqqA.205.191 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)D193 T0506 207 :AKTGRWK 1qqqA 194 :LEVGDFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36881 # 1hf2A.205.68 read from T0506.t04.many.frag # found chain 1hf2A in template set Warning: unaligning (T0506)A205 (1hf2A)L69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1hf2A)Q75 because Y (epsilon') conformation "forbidden" or filtered. T0506 206 :GAKTG 1hf2A 70 :GLEVS T0506 212 :WK 1hf2A 76 :IL Number of specific fragments extracted= 2 number of extra gaps= 2 total=36883 # 2b8nA.205.347 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)K208 (2b8nA)G339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (2b8nA)G342 because T (delta_L) conformation "forbidden" or filtered. T0506 205 :AGA 2b8nA 336 :ALE T0506 209 :TG 2b8nA 340 :IE T0506 212 :WK 2b8nA 343 :VI Number of specific fragments extracted= 3 number of extra gaps= 2 total=36886 1ekrA expands to /projects/compbio/data/pdb/1ekr.pdb.gz 1ekrA:Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 540, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 542, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 544, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 546, because occupancy 0.300 <= existing 0.700 in 1ekrA Skipped atom 913, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 915, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 917, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 919, because occupancy 0.500 <= existing 0.500 in 1ekrA Skipped atom 1019, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1021, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1023, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1025, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1027, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1029, because occupancy 0.400 <= existing 0.600 in 1ekrA Skipped atom 1031, because occupancy 0.400 <= existing 0.600 in 1ekrA # 1ekrA.205.134 read from T0506.t04.many.frag # adding 1ekrA to template set # found chain 1ekrA in template set Warning: unaligning (T0506)A207 (1ekrA)M137 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1ekrA)G140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1ekrA)P141 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1ekrA)R143 because Y (epsilon') conformation "forbidden" or filtered. T0506 205 :AG 1ekrA 135 :KD T0506 208 :KT 1ekrA 138 :VI T0506 212 :W 1ekrA 142 :V Number of specific fragments extracted= 3 number of extra gaps= 3 total=36889 # 1y7tA.205.253 read from T0506.t04.many.frag # found chain 1y7tA in template set T0506 205 :AGAKTGRWK 1y7tA 258 :LGTPEGDWV Number of specific fragments extracted= 1 number of extra gaps= 0 total=36890 # 1qd1A.205.258 read from T0506.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)R211 (1qd1A)G266 because S (epsilon) conformation "forbidden" or filtered. T0506 205 :AGAKTG 1qd1A 260 :LSLPVV T0506 212 :WK 1qd1A 267 :SQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=36892 # 1tvlA.205.259 read from T0506.t04.many.frag # found chain 1tvlA in template set Warning: unaligning (T0506)A205 (1tvlA)E258 because G (3-10) conformation "forbidden" or filtered. T0506 206 :GAKTGRWK 1tvlA 259 :GRDPSSVR Number of specific fragments extracted= 1 number of extra gaps= 1 total=36893 # 1yzhA.205.171 read from T0506.t04.many.frag # found chain 1yzhA in template set Warning: unaligning (T0506)A207 (1yzhA)M171 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AG 1yzhA 169 :YG T0506 208 :KTGRWK 1yzhA 172 :KLNGVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=36895 # 1o08A.205.157 read from T0506.t04.many.frag # found chain 1o08A in training set Warning: unaligning (T0506)K208 (1o08A)A1161 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1o08A)E1164 because G (3-10) conformation "forbidden" or filtered. T0506 205 :AGA 1o08A 1158 :VGV T0506 209 :TG 1o08A 1162 :PS T0506 212 :WK 1o08A 1165 :SI Number of specific fragments extracted= 3 number of extra gaps= 2 total=36898 # 1nzjA.205.207 read from T0506.t04.many.frag # found chain 1nzjA in training set T0506 205 :AGAKTGRWK 1nzjA 208 :FGWKVPDYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36899 # 1nnlA.205.122 read from T0506.t04.many.frag # found chain 1nnlA in training set Warning: unaligning (T0506)A205 (1nnlA)L123 because G (3-10) conformation "forbidden" or filtered. T0506 206 :GAKTGRWK 1nnlA 124 :NIPATNVF Number of specific fragments extracted= 1 number of extra gaps= 1 total=36900 # 1floA.205.194 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)A207 (1floA)V198 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K208 (1floA)D199 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AG 1floA 196 :KN T0506 209 :TGRWK 1floA 200 :PKSFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36902 # 1lycA.205.281 read from T0506.t04.many.frag # found chain 1lycA in training set Warning: unaligning (T0506)A207 (1lycA)F284 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1lycA)T290 because P (beta_P) conformation "forbidden" or filtered. T0506 205 :AG 1lycA 282 :LG T0506 208 :KTGRW 1lycA 285 :DRNAL Number of specific fragments extracted= 2 number of extra gaps= 2 total=36904 # 2bduA.205.177 read from T0506.t04.many.frag # found chain 2bduA in template set T0506 205 :AGAKTGRWK 2bduA 178 :AGVYHSNVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36905 # 1nrzA.206.95 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 206 :GAKTGRWKI 1nrzA 97 :GVQIATLNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36906 # 1dp4A.206.229 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 206 :GAKTGRWKI 1dp4A 230 :GLTGEDYVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=36907 # 1lam.206.438 read from T0506.t04.many.frag # found chain 1lam in training set T0506 206 :GAKTGRWKI 1lam 439 :FVTHPKWAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=36908 # 1vioA.206.195 read from T0506.t04.many.frag # found chain 1vioA in training set T0506 206 :GAKTGRWKI 1vioA 194 :GNKVVGLHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=36909 # 8abp.206.219 read from T0506.t04.many.frag # found chain 8abp in training set T0506 206 :GAKTGRWKI 8abp 220 :GFKAADIIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36910 # 1u2cA.206.159 read from T0506.t04.many.frag # found chain 1u2cA in template set Warning: unaligning (T0506)K208 (1u2cA)E219 because P (beta_P) conformation "forbidden" or filtered. T0506 206 :GA 1u2cA 217 :EV T0506 209 :TGRWKI 1u2cA 220 :LHNMKL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36912 1yq5A expands to /projects/compbio/data/pdb/1yq5.pdb.gz 1yq5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1yq5A.206.27 read from T0506.t04.many.frag # adding 1yq5A to template set # found chain 1yq5A in template set Warning: unaligning (T0506)R211 (1yq5A)G229 because G (3-10) conformation "forbidden" or filtered. T0506 206 :GAKTG 1yq5A 224 :DFDLS T0506 212 :WKI 1yq5A 230 :ALT Number of specific fragments extracted= 2 number of extra gaps= 1 total=36914 # 1m4tA.206.303 read from T0506.t04.many.frag # found chain 1m4tA in template set Warning: unaligning (T0506)K208 (1m4tA)K306 because P (beta_P) conformation "forbidden" or filtered. T0506 206 :GA 1m4tA 304 :GW T0506 209 :TGRWKI 1m4tA 307 :IGDLDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36916 # 1ekrA.206.135 read from T0506.t04.many.frag # found chain 1ekrA in template set Warning: unaligning (T0506)G206 (1ekrA)D136 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1ekrA)P141 because C (cis) conformation "forbidden" or filtered. T0506 207 :AKTG 1ekrA 137 :MVIG T0506 212 :WKI 1ekrA 142 :VRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=36918 # 1yb0A.206.119 read from T0506.t04.many.frag # found chain 1yb0A in template set T0506 206 :GAKTGRWKI 1yb0A 120 :NIPIENVRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=36919 # 1i24A.206.291 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)G206 (1i24A)P282 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTGRWKI 1i24A 283 :AKAGEFRV Number of specific fragments extracted= 1 number of extra gaps= 1 total=36920 # 2fckA.206.128 read from T0506.t04.many.frag # found chain 2fckA in template set T0506 206 :GAKTGRWKI 2fckA 126 :RLELTRLEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36921 # 1cqmA.206.33 read from T0506.t04.many.frag # found chain 1cqmA in training set T0506 206 :GAKTGRWKI 1cqmA 34 :GARVEKVAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36922 # 1qqqA.206.192 read from T0506.t04.many.frag # found chain 1qqqA in training set Warning: unaligning (T0506)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qqqA)D193 Warning: unaligning (T0506)A207 (1qqqA)L194 because E (beta_S) conformation "forbidden" or filtered. T0506 208 :KTGRWKI 1qqqA 195 :EVGDFVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36923 # 1px5A.206.50 read from T0506.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0506)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1px5A)P51 Warning: unaligning (T0506)R211 (1px5A)K56 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :AKTG 1px5A 52 :VRVS T0506 212 :WKI 1px5A 57 :VVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=36925 # 2b8nA.206.348 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)K208 (2b8nA)G339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (2b8nA)E341 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (2b8nA)G342 because T (delta_L) conformation "forbidden" or filtered. T0506 206 :GA 2b8nA 337 :LE T0506 209 :T 2b8nA 340 :I T0506 212 :WKI 2b8nA 343 :VIL Number of specific fragments extracted= 3 number of extra gaps= 2 total=36928 # 1qd1A.206.259 read from T0506.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)G210 (1qd1A)V265 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1qd1A)S267 because Y (epsilon') conformation "forbidden" or filtered. T0506 206 :GAKT 1qd1A 261 :SLPV T0506 211 :R 1qd1A 266 :G T0506 213 :KI 1qd1A 268 :QL Number of specific fragments extracted= 3 number of extra gaps= 2 total=36931 # 1xeaA.206.179 read from T0506.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0506)K208 (1xeaA)N182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1xeaA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1xeaA)H187 because E (beta_S) conformation "forbidden" or filtered. T0506 206 :GA 1xeaA 180 :QC T0506 209 :TG 1xeaA 183 :LD T0506 212 :W 1xeaA 186 :L T0506 214 :I 1xeaA 188 :L Number of specific fragments extracted= 4 number of extra gaps= 3 total=36935 # 1sh8A.206.71 read from T0506.t04.many.frag # found chain 1sh8A in training set Warning: unaligning (T0506)A207 (1sh8A)F71 because E (beta_S) conformation "forbidden" or filtered. T0506 206 :G 1sh8A 70 :S T0506 208 :KTGRWKI 1sh8A 72 :DSARFYP Number of specific fragments extracted= 2 number of extra gaps= 1 total=36937 # 1rloA.206.203 read from T0506.t04.many.frag # found chain 1rloA in template set T0506 206 :GAKTGRWKI 1rloA 204 :DLSPQNVVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=36938 # 1ra6A.206.314 read from T0506.t04.many.frag # found chain 1ra6A in template set T0506 206 :GAKTGRWKI 1ra6A 315 :GIDLDHLKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36939 # 1pg4A.206.538 read from T0506.t04.many.frag # found chain 1pg4A in training set Warning: unaligning (T0506)G206 (1pg4A)H539 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1pg4A)E544 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :AKTG 1pg4A 540 :PKIA T0506 212 :WKI 1pg4A 545 :AAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=36941 # 1vjlA.206.80 read from T0506.t04.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)R211 (1vjlA)K74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1vjlA)I76 because E (beta_S) conformation "forbidden" or filtered. T0506 206 :GAKTG 1vjlA 69 :EARVD T0506 212 :W 1vjlA 75 :V T0506 214 :I 1vjlA 77 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=36944 # 1floA.206.195 read from T0506.t04.many.frag # found chain 1floA in template set Warning: unaligning (T0506)G206 (1floA)N197 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1floA)F203 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTGR 1floA 198 :VDPKS T0506 213 :KI 1floA 204 :KL Number of specific fragments extracted= 2 number of extra gaps= 2 total=36946 # 1lfpA.206.190 read from T0506.t04.many.frag # found chain 1lfpA in training set Warning: unaligning (T0506)K213 (1lfpA)Q198 because Y (epsilon') conformation "forbidden" or filtered. T0506 206 :GAKTGRW 1lfpA 191 :GVPIEKA T0506 214 :I 1lfpA 199 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=36948 # 1qu9A.206.64 read from T0506.t04.many.frag # found chain 1qu9A in training set T0506 206 :GAKTGRWKI 1qu9A 65 :GLKVGDIVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=36949 # 1ykdA.206.228 read from T0506.t04.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)R211 (1ykdA)R291 because Y (epsilon') conformation "forbidden" or filtered. T0506 206 :GAKTG 1ykdA 286 :LMNAD T0506 212 :WKI 1ykdA 292 :STL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36951 # 1l6rA.206.165 read from T0506.t04.many.frag # found chain 1l6rA in training set Warning: unaligning (T0506)K213 (1l6rA)L170 because E (beta_S) conformation "forbidden" or filtered. T0506 206 :GAKTGRW 1l6rA 163 :SLEYDEI T0506 214 :I 1l6rA 171 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=36953 # 2hft.206.104 read from T0506.t04.many.frag # found chain 2hft in training set Warning: unaligning (T0506)G210 (2hft)G109 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (2hft)P111 because P (beta_P) conformation "forbidden" or filtered. T0506 206 :GAKT 2hft 105 :ETNL T0506 211 :R 2hft 110 :Q T0506 213 :KI 2hft 112 :TI Number of specific fragments extracted= 3 number of extra gaps= 2 total=36956 # 1q3iA.206.191 read from T0506.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0506)G206 (1q3iA)N570 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A207 (1q3iA)F571 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1q3iA)E574 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1q3iA)K575 because L (left) conformation "forbidden" or filtered. T0506 208 :KT 1q3iA 572 :PT T0506 212 :WKI 1q3iA 576 :LCF Number of specific fragments extracted= 2 number of extra gaps= 2 total=36958 # 1nrzA.207.96 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 207 :AKTGRWKIT 1nrzA 98 :VQIATLNIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=36959 # 1dp4A.207.230 read from T0506.t04.many.frag # found chain 1dp4A in template set Warning: unaligning (T0506)K213 (1dp4A)V237 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :AKTGRW 1dp4A 231 :LTGEDY T0506 214 :IT 1dp4A 238 :FF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36961 # 1yq5A.207.28 read from T0506.t04.many.frag # found chain 1yq5A in template set Warning: unaligning (T0506)K213 (1yq5A)L231 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTGRW 1yq5A 225 :FDLSGA T0506 214 :IT 1yq5A 232 :TV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36963 # 1u2cA.207.160 read from T0506.t04.many.frag # found chain 1u2cA in template set Warning: unaligning (T0506)R211 (1u2cA)N222 because G (3-10) conformation "forbidden" or filtered. T0506 207 :AKTG 1u2cA 218 :VELH T0506 212 :WKIT 1u2cA 223 :MKLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=36965 # 8abp.207.220 read from T0506.t04.many.frag # found chain 8abp in training set T0506 207 :AKTGRWKIT 8abp 221 :FKAADIIGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36966 # 1lam.207.439 read from T0506.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0506)K213 (1lam)A446 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :AKTGRW 1lam 440 :VTHPKW T0506 214 :IT 1lam 447 :HL Number of specific fragments extracted= 2 number of extra gaps= 1 total=36968 # 1ekrA.207.136 read from T0506.t04.many.frag # found chain 1ekrA in template set Warning: unaligning (T0506)K208 (1ekrA)V138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1ekrA)P141 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1ekrA)R143 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :A 1ekrA 137 :M T0506 209 :TG 1ekrA 139 :IG T0506 212 :W 1ekrA 142 :V T0506 214 :IT 1ekrA 144 :LL Number of specific fragments extracted= 4 number of extra gaps= 3 total=36972 # 1i24A.207.292 read from T0506.t04.many.frag # found chain 1i24A in template set Warning: unaligning (T0506)W212 (1i24A)F288 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1i24A)R289 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTGR 1i24A 283 :AKAGE T0506 214 :IT 1i24A 290 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=36974 # 1px5A.207.51 read from T0506.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0506)K208 (1px5A)R53 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :A 1px5A 52 :V T0506 209 :TGRWKIT 1px5A 54 :VSKVVKG Number of specific fragments extracted= 2 number of extra gaps= 1 total=36976 # 2b8nA.207.349 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)K208 (2b8nA)G339 because T (delta_L) conformation "forbidden" or filtered. T0506 207 :A 2b8nA 338 :E T0506 209 :TGRWKIT 2b8nA 340 :IEGVILC Number of specific fragments extracted= 2 number of extra gaps= 1 total=36978 # 1ok7A.207.330 read from T0506.t04.many.frag # found chain 1ok7A in training set T0506 207 :AKTGRWKIT 1ok7A 331 :LKCENVRMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=36979 # 1ra6A.207.315 read from T0506.t04.many.frag # found chain 1ra6A in template set T0506 207 :AKTGRWKIT 1ra6A 316 :IDLDHLKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36980 # 1xeaA.207.180 read from T0506.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0506)K208 (1xeaA)N182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1xeaA)D185 because L (left) conformation "forbidden" or filtered. T0506 207 :A 1xeaA 181 :C T0506 209 :TG 1xeaA 183 :LD T0506 212 :WKIT 1xeaA 186 :LHLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=36983 # 1vjlA.207.81 read from T0506.t04.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)R211 (1vjlA)K74 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :AKTG 1vjlA 70 :ARVD T0506 212 :WKIT 1vjlA 75 :VIIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=36985 # 1q3iA.207.192 read from T0506.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0506)K208 (1q3iA)P572 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1q3iA)K575 because L (left) conformation "forbidden" or filtered. T0506 207 :A 1q3iA 571 :F T0506 209 :TG 1q3iA 573 :TE T0506 212 :WKIT 1q3iA 576 :LCFV Number of specific fragments extracted= 3 number of extra gaps= 2 total=36988 # 1ux6A.207.264 read from T0506.t04.many.frag # found chain 1ux6A in template set T0506 207 :AKTGRWKIT 1ux6A 1067 :NTPGQVRTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=36989 # 1ykdA.207.229 read from T0506.t04.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)K208 (1ykdA)N288 because L (left) conformation "forbidden" or filtered. T0506 207 :A 1ykdA 287 :M T0506 209 :TGRWKIT 1ykdA 289 :ADRSTLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=36991 # 1yvhA.207.275 read from T0506.t04.many.frag # found chain 1yvhA in template set Warning: unaligning (T0506)A207 (1yvhA)T298 because G (3-10) conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1yvhA 299 :RLGQWAIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=36992 # 1qd1A.207.260 read from T0506.t04.many.frag # found chain 1qd1A in training set Warning: unaligning (T0506)G210 (1qd1A)V265 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1qd1A)G266 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1qd1A)Q268 because E (beta_S) conformation "forbidden" or filtered. T0506 207 :AKT 1qd1A 262 :LPV T0506 212 :W 1qd1A 267 :S T0506 214 :IT 1qd1A 269 :LV Number of specific fragments extracted= 3 number of extra gaps= 2 total=36995 # 1y7tA.207.255 read from T0506.t04.many.frag # found chain 1y7tA in template set Warning: unaligning (T0506)K213 (1y7tA)V266 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :AKTGRW 1y7tA 260 :TPEGDW T0506 214 :IT 1y7tA 267 :SM Number of specific fragments extracted= 2 number of extra gaps= 1 total=36997 # 1sh8A.207.72 read from T0506.t04.many.frag # found chain 1sh8A in training set T0506 207 :AKTGRWKIT 1sh8A 71 :FDSARFYPI Number of specific fragments extracted= 1 number of extra gaps= 0 total=36998 # 1vioA.207.196 read from T0506.t04.many.frag # found chain 1vioA in training set T0506 207 :AKTGRWKIT 1vioA 195 :NKVVGLHRW Number of specific fragments extracted= 1 number of extra gaps= 0 total=36999 # 1m4tA.207.304 read from T0506.t04.many.frag # found chain 1m4tA in template set Warning: unaligning (T0506)G210 (1m4tA)G308 because H (helix) conformation "forbidden" or filtered. T0506 207 :AKT 1m4tA 305 :WKI T0506 211 :RWKIT 1m4tA 309 :DLDLV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37001 # 1i4jA.207.63 read from T0506.t04.many.frag # found chain 1i4jA in training set Warning: unaligning (T0506)R211 (1i4jA)R68 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1i4jA)L69 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTG 1i4jA 64 :ALED T0506 213 :KIT 1i4jA 70 :YVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37003 # 1fiuA.207.86 read from T0506.t04.many.frag # found chain 1fiuA in training set Warning: unaligning (T0506)G210 (1fiuA)G90 because Y (epsilon') conformation "forbidden" or filtered. T0506 207 :AKT 1fiuA 87 :IRP T0506 211 :RWKIT 1fiuA 91 :DWNVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37005 # 1vlrA.207.268 read from T0506.t04.many.frag # found chain 1vlrA in template set Warning: unaligning (T0506)A207 (1vlrA)V257 because E (beta_S) conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1vlrA 258 :TGDRLRVY Number of specific fragments extracted= 1 number of extra gaps= 1 total=37006 # 1iruK.207.172 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)K213 (1iruK)S179 because P (beta_P) conformation "forbidden" or filtered. T0506 207 :AKTGRW 1iruK 173 :LNLPTF T0506 214 :IT 1iruK 180 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37008 # 2sak.207.55 read from T0506.t04.many.frag # found chain 2sak in training set T0506 207 :AKTGRWKIT 2sak 71 :TAYKEFRVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37009 # 1rloA.207.204 read from T0506.t04.many.frag # found chain 1rloA in template set Warning: unaligning (T0506)R211 (1rloA)N209 because G (3-10) conformation "forbidden" or filtered. T0506 207 :AKTG 1rloA 205 :LSPQ T0506 212 :WKIT 1rloA 210 :VVAI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37011 # 1cqmA.207.34 read from T0506.t04.many.frag # found chain 1cqmA in training set T0506 207 :AKTGRWKIT 1cqmA 35 :ARVEKVAIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37012 # 1dp4A.208.231 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 208 :KTGRWKITS 1dp4A 232 :TGEDYVFFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37013 # 1yq5A.208.29 read from T0506.t04.many.frag # found chain 1yq5A in template set T0506 208 :KTGRWKITS 1yq5A 226 :DLSGALTVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37014 # 1ux6A.208.265 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)K208 (1ux6A)T1068 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1ux6A 1069 :PGQVRTL Number of specific fragments extracted= 1 number of extra gaps= 2 total=37015 # 1u2cA.208.161 read from T0506.t04.many.frag # found chain 1u2cA in template set T0506 208 :KTGRWKITS 1u2cA 219 :ELHNMKLVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37016 # 1px5A.208.52 read from T0506.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0506)S216 (1px5A)G61 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1px5A 53 :RVSKVVKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37017 # 2b8nA.208.350 read from T0506.t04.many.frag # found chain 2b8nA in template set Warning: unaligning (T0506)G210 (2b8nA)E341 because P (beta_P) conformation "forbidden" or filtered. T0506 208 :KT 2b8nA 339 :GI T0506 211 :RWKITS 2b8nA 342 :GVILCS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37019 # 1ykdA.208.230 read from T0506.t04.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)K208 (1ykdA)N288 because L (left) conformation "forbidden" or filtered. T0506 209 :TGRWKITS 1ykdA 289 :ADRSTLWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37020 # 1ne9A.208.223 read from T0506.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)K208 (1ne9A)D224 because P (beta_P) conformation "forbidden" or filtered. T0506 209 :TGRWKITS 1ne9A 225 :ADTMRIFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37021 # 1lam.208.440 read from T0506.t04.many.frag # found chain 1lam in training set Warning: unaligning (T0506)K208 (1lam)T441 because G (3-10) conformation "forbidden" or filtered. T0506 209 :TGRWKITS 1lam 442 :HPKWAHLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37022 # 8abp.208.221 read from T0506.t04.many.frag # found chain 8abp in training set T0506 208 :KTGRWKITS 8abp 222 :KAADIIGIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37023 # 1ok7A.208.331 read from T0506.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)K208 (1ok7A)K332 because L (left) conformation "forbidden" or filtered. T0506 209 :TGRWKITS 1ok7A 333 :CENVRMML Number of specific fragments extracted= 1 number of extra gaps= 1 total=37024 # 1nrzA.208.97 read from T0506.t04.many.frag # found chain 1nrzA in training set T0506 208 :KTGRWKITS 1nrzA 99 :QIATLNIGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37025 # 1ekrA.208.137 read from T0506.t04.many.frag # found chain 1ekrA in template set Warning: unaligning (T0506)G210 (1ekrA)G140 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1ekrA)P141 because C (cis) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1ekrA)R143 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KT 1ekrA 138 :VI T0506 212 :W 1ekrA 142 :V T0506 214 :ITS 1ekrA 144 :LLA Number of specific fragments extracted= 3 number of extra gaps= 2 total=37028 # 1ix9A.208.123 read from T0506.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)T209 (1ix9A)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1ix9A)S126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ix9A)L131 Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ix9A)L131 T0506 208 :K 1ix9A 124 :F T0506 211 :RWK 1ix9A 127 :GWA T0506 216 :S 1ix9A 132 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=37031 # 1iruK.208.173 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)T209 (1iruK)L175 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T215 (1iruK)R181 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :K 1iruK 174 :N T0506 210 :GRWKI 1iruK 176 :PTFSV T0506 216 :S 1iruK 182 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=37034 # 1vjlA.208.82 read from T0506.t04.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)R211 (1vjlA)K74 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTG 1vjlA 71 :RVD T0506 212 :WKITS 1vjlA 75 :VIIHS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37036 # 2fb5A.208.175 read from T0506.t04.many.frag # found chain 2fb5A in template set T0506 208 :KTGRWKITS 2fb5A 176 :EKSDALILV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37037 # 2sak.208.56 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)R211 (2sak)E75 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTG 2sak 72 :AYK T0506 212 :WKIT 2sak 76 :FRVV Number of specific fragments extracted= 2 number of extra gaps= 2 total=37039 # 1xeaA.208.181 read from T0506.t04.many.frag # found chain 1xeaA in template set Warning: unaligning (T0506)K208 (1xeaA)N182 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1xeaA)D185 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1xeaA)Y190 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TG 1xeaA 183 :LD T0506 212 :WKIT 1xeaA 186 :LHLT Number of specific fragments extracted= 2 number of extra gaps= 3 total=37041 # 1i24A.208.293 read from T0506.t04.many.frag # found chain 1i24A in template set T0506 208 :KTGRWKITS 1i24A 284 :KAGEFRVFN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37042 # 1q3iA.208.193 read from T0506.t04.many.frag # found chain 1q3iA in template set Warning: unaligning (T0506)G210 (1q3iA)E574 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1q3iA)G580 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KT 1q3iA 572 :PT T0506 211 :RWKIT 1q3iA 575 :KLCFV Number of specific fragments extracted= 2 number of extra gaps= 2 total=37044 # 1yvhA.208.276 read from T0506.t04.many.frag # found chain 1yvhA in template set Warning: unaligning (T0506)S216 (1yvhA)Y307 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTGRWKIT 1yvhA 299 :RLGQWAIG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37045 # 1rypL.208.170 read from T0506.t04.many.frag # found chain 1rypL in template set Warning: unaligning (T0506)R211 (1rypL)S174 because Y (epsilon') conformation "forbidden" or filtered. T0506 208 :KTG 1rypL 171 :SGG T0506 212 :WKITS 1rypL 175 :VNLYH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37047 # 1tl2A.208.132 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)K208 (1tl2A)G133 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1tl2A 134 :WSGFKFL Number of specific fragments extracted= 1 number of extra gaps= 2 total=37048 # 1ra6A.208.316 read from T0506.t04.many.frag # found chain 1ra6A in template set T0506 208 :KTGRWKITS 1ra6A 317 :DLDHLKMIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37049 # 1pjxA.208.265 read from T0506.t04.many.frag # found chain 1pjxA in training set T0506 208 :KTGRWKITS 1pjxA 266 :PFEKPSNLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37050 # 1y7tA.208.256 read from T0506.t04.many.frag # found chain 1y7tA in template set Warning: unaligning (T0506)K208 (1y7tA)P261 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1y7tA)V266 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRW 1y7tA 262 :EGDW T0506 214 :ITS 1y7tA 267 :SMA Number of specific fragments extracted= 2 number of extra gaps= 2 total=37052 # 1i4jA.208.64 read from T0506.t04.many.frag # found chain 1i4jA in training set Warning: unaligning (T0506)R211 (1i4jA)R68 because G (3-10) conformation "forbidden" or filtered. T0506 208 :KTG 1i4jA 65 :LED T0506 212 :WKITS 1i4jA 69 :LYVKA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37054 # 1ifrA.208.4 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 208 :KTGRWKITS 1ifrA 436 :TSGRVAVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37055 # 1ig0A.208.211 read from T0506.t04.many.frag # found chain 1ig0A in training set T0506 208 :KTGRWKITS 1ig0A 212 :NASYFKLCY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37056 # 1ux6A.209.266 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKIT 1ux6A 1069 :PGQVRTL T0506 217 :I 1ux6A 1077 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=37058 # 1yq5A.209.30 read from T0506.t04.many.frag # found chain 1yq5A in template set Warning: unaligning (T0506)W212 (1yq5A)A230 because P (beta_P) conformation "forbidden" or filtered. T0506 209 :TGR 1yq5A 227 :LSG T0506 213 :KITSI 1yq5A 231 :LTVNS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37060 # 1ykdA.209.231 read from T0506.t04.many.frag # found chain 1ykdA in template set T0506 209 :TGRWKITSI 1ykdA 289 :ADRSTLWLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37061 # 1px5A.209.53 read from T0506.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0506)R211 (1px5A)K56 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TG 1px5A 54 :VS T0506 212 :WKITSI 1px5A 57 :VVKGGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37063 # 1u2cA.209.162 read from T0506.t04.many.frag # found chain 1u2cA in template set T0506 209 :TGRWKITSI 1u2cA 220 :LHNMKLVPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37064 # 1dp4A.209.232 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 209 :TGRWKITSI 1dp4A 233 :GEDYVFFHL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37065 # 1ok7A.209.332 read from T0506.t04.many.frag # found chain 1ok7A in training set T0506 209 :TGRWKITSI 1ok7A 333 :CENVRMMLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37066 # 1ne9A.209.224 read from T0506.t04.many.frag # found chain 1ne9A in training set T0506 209 :TGRWKITSI 1ne9A 225 :ADTMRIFVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37067 # 1rypL.209.171 read from T0506.t04.many.frag # found chain 1rypL in template set Warning: unaligning (T0506)T209 (1rypL)G172 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R211 (1rypL)S174 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :G 1rypL 173 :G T0506 212 :WKITSI 1rypL 175 :VNLYHV Number of specific fragments extracted= 2 number of extra gaps= 2 total=37069 # 2sak.209.57 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)W212 (2sak)F76 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (2sak)R77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGR 2sak 73 :YKE T0506 214 :IT 2sak 78 :VV T0506 217 :I 2sak 81 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=37072 # 1h2wA.209.286 read from T0506.t04.many.frag # found chain 1h2wA in training set T0506 209 :TGRWKITSI 1h2wA 287 :EGEYDYVTN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37073 # 1qhtA.209.530 read from T0506.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)G210 (1qhtA)F532 because G (3-10) conformation "forbidden" or filtered. T0506 209 :T 1qhtA 531 :K T0506 211 :RWKITSI 1qhtA 533 :GFKVLYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37075 # 1iruK.209.174 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)T215 (1iruK)R181 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWKI 1iruK 175 :LPTFSV T0506 216 :SI 1iruK 182 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=37077 # 1vjlA.209.83 read from T0506.t04.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)R211 (1vjlA)K74 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TG 1vjlA 72 :VD T0506 212 :WKITSI 1vjlA 75 :VIIHSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37079 # 1ifrA.209.5 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 209 :TGRWKITSI 1ifrA 437 :SGRVAVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37080 # 1pjxA.209.266 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)I214 (1pjxA)N272 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGRWK 1pjxA 267 :FEKPS T0506 215 :TSI 1pjxA 273 :LHF Number of specific fragments extracted= 2 number of extra gaps= 1 total=37082 # 2b8nA.209.351 read from T0506.t04.many.frag # found chain 2b8nA in template set T0506 209 :TGRWKITSI 2b8nA 340 :IEGVILCSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37083 # 1vrmA.209.298 read from T0506.t04.many.frag # found chain 1vrmA in training set Warning: unaligning (T0506)G210 (1vrmA)M327 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vrmA)L331 Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vrmA)L331 T0506 209 :T 1vrmA 326 :N T0506 211 :RW 1vrmA 328 :GA T0506 215 :TSI 1vrmA 332 :LIV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37086 # 1zl0A.209.172 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)W212 (1zl0A)V174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1zl0A)G178 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGR 1zl0A 171 :ELP T0506 213 :KIT 1zl0A 175 :QHL T0506 217 :I 1zl0A 179 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=37089 # 1nycA.209.51 read from T0506.t04.many.frag # found chain 1nycA in training set T0506 209 :TGRWKITSI 1nycA 50 :HNQYHILFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37090 # 2fb5A.209.176 read from T0506.t04.many.frag # found chain 2fb5A in template set T0506 209 :TGRWKITSI 2fb5A 177 :KSDALILVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37091 # 1tl2A.209.133 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)G210 (1tl2A)S135 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :T 1tl2A 134 :W T0506 211 :RWKIT 1tl2A 136 :GFKFL T0506 217 :I 1tl2A 142 :F Number of specific fragments extracted= 3 number of extra gaps= 2 total=37094 # 1gp0A.209.113 read from T0506.t04.many.frag # found chain 1gp0A in training set T0506 209 :TGRWKITSI 1gp0A 1621 :TNRPMLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37095 # 1rwhA.209.642 read from T0506.t04.many.frag # found chain 1rwhA in training set Warning: unaligning (T0506)T209 (1rwhA)G643 because T (delta_L) conformation "forbidden" or filtered. T0506 210 :GRWKITSI 1rwhA 644 :NKYSVIRN Number of specific fragments extracted= 1 number of extra gaps= 1 total=37096 # 1zsqA.209.195 read from T0506.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)T209 (1zsqA)G265 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G210 (1zsqA)R266 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1zsqA)V269 because E (beta_S) conformation "forbidden" or filtered. T0506 211 :RW 1zsqA 267 :IP T0506 214 :ITSI 1zsqA 270 :LSWI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37098 # 1t6cA.209.136 read from T0506.t04.many.frag # found chain 1t6cA in training set T0506 209 :TGRWKITSI 1t6cA 134 :EGEVCVVDQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37099 # 1ix9A.209.124 read from T0506.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)G210 (1ix9A)S126 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ix9A)L131 Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ix9A)L131 T0506 209 :T 1ix9A 125 :G T0506 211 :RWK 1ix9A 127 :GWA T0506 216 :SI 1ix9A 132 :VL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37102 # 1lam.209.441 read from T0506.t04.many.frag # found chain 1lam in training set T0506 209 :TGRWKITSI 1lam 442 :HPKWAHLDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37103 # 1ylnA.209.154 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)W212 (1ylnA)C158 because Y (epsilon') conformation "forbidden" or filtered. T0506 209 :TGR 1ylnA 155 :RGD T0506 213 :KITSI 1ylnA 159 :ELRDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37105 # 1vlrA.209.270 read from T0506.t04.many.frag # found chain 1vlrA in template set Warning: unaligning (T0506)R211 (1vlrA)R261 because G (3-10) conformation "forbidden" or filtered. T0506 209 :TG 1vlrA 259 :GD T0506 212 :WKITSI 1vlrA 262 :LRVYLH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37107 # 1ux6A.210.267 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 1ux6A 1070 :GQVRTL T0506 217 :ID 1ux6A 1077 :HD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37109 # 1qhtA.210.531 read from T0506.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)G210 (1qhtA)F532 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1qhtA)F534 because P (beta_P) conformation "forbidden" or filtered. T0506 211 :R 1qhtA 533 :G T0506 213 :KITSID 1qhtA 535 :KVLYAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=37111 # 1yq5A.210.31 read from T0506.t04.many.frag # found chain 1yq5A in template set T0506 210 :GRWKITSID 1yq5A 228 :SGALTVNSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37112 # 1h2wA.210.287 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)G210 (1h2wA)G288 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (1h2wA)Y290 because D (zeta) conformation "forbidden" or filtered. T0506 211 :R 1h2wA 289 :E T0506 213 :KITSID 1h2wA 291 :DYVTNE Number of specific fragments extracted= 2 number of extra gaps= 2 total=37114 # 1ifrA.210.6 read from T0506.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0506)K213 (1ifrA)A441 because E (beta_S) conformation "forbidden" or filtered. T0506 210 :GRW 1ifrA 438 :GRV T0506 214 :ITSID 1ifrA 442 :VEEVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37116 # 1ykdA.210.232 read from T0506.t04.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)R211 (1ykdA)R291 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :G 1ykdA 290 :D T0506 212 :WKITSID 1ykdA 292 :STLWLID Number of specific fragments extracted= 2 number of extra gaps= 1 total=37118 # 1px5A.210.54 read from T0506.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0506)R211 (1px5A)K56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1px5A)R72 T0506 210 :G 1px5A 55 :S T0506 212 :WKITSI 1px5A 57 :VVKGGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37120 # 1u2cA.210.163 read from T0506.t04.many.frag # found chain 1u2cA in template set T0506 210 :GRWKITSID 1u2cA 221 :HNMKLVPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37121 # 2sak.210.58 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 2sak 74 :KEFRVV T0506 217 :ID 2sak 81 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37123 # 1ok7A.210.333 read from T0506.t04.many.frag # found chain 1ok7A in training set T0506 210 :GRWKITSID 1ok7A 334 :ENVRMMLTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37124 # 1nycA.210.52 read from T0506.t04.many.frag # found chain 1nycA in training set T0506 210 :GRWKITSID 1nycA 51 :NQYHILFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=37125 # 1zl0A.210.173 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)W212 (1zl0A)V174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1zl0A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I217 (1zl0A)G179 because S (epsilon) conformation "forbidden" or filtered. T0506 210 :GR 1zl0A 172 :LP T0506 213 :KIT 1zl0A 175 :QHL T0506 218 :D 1zl0A 180 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=37128 # 1rypL.210.172 read from T0506.t04.many.frag # found chain 1rypL in template set Warning: unaligning (T0506)R211 (1rypL)S174 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :G 1rypL 173 :G T0506 212 :WKITSID 1rypL 175 :VNLYHVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37130 # 1zsqA.210.196 read from T0506.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)G210 (1zsqA)R266 because N (gamma') conformation "forbidden" or filtered. T0506 211 :RWKITSID 1zsqA 267 :IPVLSWIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=37131 # 1vjlA.210.84 read from T0506.t04.many.frag # found chain 1vjlA in template set T0506 210 :GRWKITSID 1vjlA 73 :DKVIIHSLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37132 # 1kt6A.210.101 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)R211 (1kt6A)D103 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)I217 (1kt6A)T109 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 T0506 210 :G 1kt6A 102 :D T0506 212 :WKITS 1kt6A 104 :HWIID Number of specific fragments extracted= 2 number of extra gaps= 2 total=37134 # 1pjxA.210.267 read from T0506.t04.many.frag # found chain 1pjxA in training set T0506 210 :GRWKITSID 1pjxA 268 :EKPSNLHFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37135 # 1iruK.210.175 read from T0506.t04.many.frag # found chain 1iruK in template set T0506 210 :GRWKITSID 1iruK 176 :PTFSVRIID Number of specific fragments extracted= 1 number of extra gaps= 0 total=37136 # 1ylnA.210.155 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)G210 (1ylnA)G156 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1ylnA)E159 because E (beta_S) conformation "forbidden" or filtered. T0506 211 :RW 1ylnA 157 :DC T0506 214 :ITSID 1ylnA 160 :LRDLS Number of specific fragments extracted= 2 number of extra gaps= 2 total=37138 # 1rwhA.210.643 read from T0506.t04.many.frag # found chain 1rwhA in training set T0506 210 :GRWKITSID 1rwhA 644 :NKYSVIRND Number of specific fragments extracted= 1 number of extra gaps= 0 total=37139 # 1i4uA.210.102 read from T0506.t04.many.frag # found chain 1i4uA in training set Warning: unaligning (T0506)G210 (1i4uA)A103 because E (beta_S) conformation "forbidden" or filtered. T0506 211 :RWKITSID 1i4uA 104 :PLVILETD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37140 # 1gp0A.210.114 read from T0506.t04.many.frag # found chain 1gp0A in training set Warning: unaligning (T0506)S216 (1gp0A)S1628 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 1gp0A 1622 :NRPMLI T0506 217 :ID 1gp0A 1629 :LD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37142 # 1tl2A.210.134 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRWKIT 1tl2A 135 :SGFKFL T0506 217 :ID 1tl2A 142 :FH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37144 # 1pbyB.210.279 read from T0506.t04.many.frag # found chain 1pbyB in training set T0506 210 :GRWKITSID 1pbyB 280 :HSYYSVNVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37145 # 1ne9A.210.225 read from T0506.t04.many.frag # found chain 1ne9A in training set Warning: unaligning (T0506)D218 (1ne9A)E234 because E (beta_S) conformation "forbidden" or filtered. T0506 210 :GRWKITSI 1ne9A 226 :DTMRIFVA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37146 # 1t6cA.210.137 read from T0506.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0506)K213 (1t6cA)C138 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1t6cA)G143 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :GRW 1t6cA 135 :GEV T0506 214 :ITSI 1t6cA 139 :VVDQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=37148 # 1crzA.210.304 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)K213 (1crzA)Q314 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I214 (1crzA)D315 because L (left) conformation "forbidden" or filtered. T0506 210 :GRW 1crzA 311 :SQN T0506 215 :TSID 1crzA 316 :ADVS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37150 # 1dp4A.210.233 read from T0506.t04.many.frag # found chain 1dp4A in template set T0506 210 :GRWKITSID 1dp4A 234 :EDYVFFHLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37151 # 2d28C.210.93 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)R211 (2d28C)H95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2d28C)G100 because Y (epsilon') conformation "forbidden" or filtered. T0506 210 :G 2d28C 94 :F T0506 212 :WKIT 2d28C 96 :LCPV T0506 217 :ID 2d28C 101 :ER Number of specific fragments extracted= 3 number of extra gaps= 2 total=37154 # 1hxn.210.114 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)G210 (1hxn)E330 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1hxn)F336 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :RWKIT 1hxn 331 :AVDAA T0506 217 :ID 1hxn 337 :VC Number of specific fragments extracted= 2 number of extra gaps= 2 total=37156 # 1ux6A.211.268 read from T0506.t04.many.frag # found chain 1ux6A in template set T0506 211 :RWKITSIDP 1ux6A 1071 :QVRTLWHDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37157 # 1qhtA.211.532 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 211 :RWKITSIDP 1qhtA 533 :GFKVLYADT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37158 # 1ifrA.211.7 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 211 :RWKITSIDP 1ifrA 439 :RVAVEEVDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37159 # 1h2wA.211.288 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)W212 (1h2wA)Y290 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1h2wA)T294 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :R 1h2wA 289 :E T0506 213 :KIT 1h2wA 291 :DYV T0506 217 :IDP 1h2wA 295 :NEG Number of specific fragments extracted= 3 number of extra gaps= 2 total=37162 # 1nycA.211.53 read from T0506.t04.many.frag # found chain 1nycA in training set Warning: unaligning (T0506)K213 (1nycA)H54 because E (beta_S) conformation "forbidden" or filtered. T0506 211 :RW 1nycA 52 :QY T0506 214 :ITSIDP 1nycA 55 :ILFIDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37164 # 1ylnA.211.156 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)W212 (1ylnA)C158 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :R 1ylnA 157 :D T0506 213 :KITSIDP 1ylnA 159 :ELRDLSR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37166 # 1zl0A.211.174 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)W212 (1zl0A)V174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1zl0A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I217 (1zl0A)G179 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1zl0A)K181 because G (3-10) conformation "forbidden" or filtered. T0506 211 :R 1zl0A 173 :P T0506 213 :KIT 1zl0A 175 :QHL T0506 218 :D 1zl0A 180 :H Number of specific fragments extracted= 3 number of extra gaps= 3 total=37169 # 1ok7A.211.334 read from T0506.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)K213 (1ok7A)R337 because E (beta_S) conformation "forbidden" or filtered. T0506 211 :RW 1ok7A 335 :NV T0506 214 :ITSIDP 1ok7A 338 :MMLTDS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37171 # 1ykdA.211.233 read from T0506.t04.many.frag # found chain 1ykdA in template set T0506 211 :RWKITSIDP 1ykdA 291 :RSTLWLIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37172 # 2sak.211.59 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :RWKIT 2sak 75 :EFRVV T0506 217 :IDP 2sak 81 :LDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37174 # 1rypL.211.173 read from T0506.t04.many.frag # found chain 1rypL in template set T0506 211 :RWKITSIDP 1rypL 174 :SVNLYHVTE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37175 # 1yq5A.211.32 read from T0506.t04.many.frag # found chain 1yq5A in template set T0506 211 :RWKITSIDP 1yq5A 229 :GALTVNSVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37176 # 1zsqA.211.197 read from T0506.t04.many.frag # found chain 1zsqA in template set T0506 211 :RWKITSIDP 1zsqA 267 :IPVLSWIHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37177 # 1pbyB.211.280 read from T0506.t04.many.frag # found chain 1pbyB in training set T0506 211 :RWKITSIDP 1pbyB 281 :SYYSVNVST Number of specific fragments extracted= 1 number of extra gaps= 0 total=37178 # 1kt6A.211.102 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)K213 (1kt6A)W105 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1kt6A)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 211 :RW 1kt6A 103 :DH T0506 214 :IT 1kt6A 106 :II T0506 217 :I 1kt6A 109 :T Number of specific fragments extracted= 3 number of extra gaps= 3 total=37181 # 1px5A.211.55 read from T0506.t04.many.frag # found chain 1px5A in training set Warning: unaligning (T0506)R211 (1px5A)K56 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T215 (1px5A)G60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1px5A)R72 T0506 212 :WKI 1px5A 57 :VVK T0506 216 :SI 1px5A 61 :GS Number of specific fragments extracted= 2 number of extra gaps= 2 total=37183 # 1i4uA.211.103 read from T0506.t04.many.frag # found chain 1i4uA in training set Warning: unaligning (T0506)P219 (1i4uA)Y112 because T (delta_L) conformation "forbidden" or filtered. T0506 211 :RWKITSID 1i4uA 104 :PLVILETD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37184 # 1pjxA.211.268 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)R211 (1pjxA)K269 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1pjxA)K276 because P (beta_P) conformation "forbidden" or filtered. T0506 212 :WKITSI 1pjxA 270 :PSNLHF T0506 219 :P 1pjxA 277 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=37186 # 1u2cA.211.164 read from T0506.t04.many.frag # found chain 1u2cA in template set Warning: unaligning (T0506)R211 (1u2cA)N222 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1u2cA)N230 because L (left) conformation "forbidden" or filtered. T0506 212 :WKITSID 1u2cA 223 :MKLVPVV Number of specific fragments extracted= 1 number of extra gaps= 2 total=37187 # 1vjlA.211.85 read from T0506.t04.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)R211 (1vjlA)K74 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1vjlA)D82 because L (left) conformation "forbidden" or filtered. T0506 212 :WKITSID 1vjlA 75 :VIIHSLK Number of specific fragments extracted= 1 number of extra gaps= 2 total=37188 # 1iruK.211.176 read from T0506.t04.many.frag # found chain 1iruK in template set T0506 211 :RWKITSIDP 1iruK 177 :TFSVRIIDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37189 # 1rwhA.211.644 read from T0506.t04.many.frag # found chain 1rwhA in training set Warning: unaligning (T0506)D218 (1rwhA)D652 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :RWKITSI 1rwhA 645 :KYSVIRN T0506 219 :P 1rwhA 653 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=37191 # 1tl2A.211.135 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :RWKIT 1tl2A 136 :GFKFL T0506 217 :IDP 1tl2A 142 :FHP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37193 # 1gp0A.211.115 read from T0506.t04.many.frag # found chain 1gp0A in training set T0506 211 :RWKITSIDP 1gp0A 1623 :RPMLISLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37194 # 1t6cA.211.138 read from T0506.t04.many.frag # found chain 1t6cA in training set Warning: unaligning (T0506)D218 (1t6cA)G143 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1t6cA)G144 because L (left) conformation "forbidden" or filtered. T0506 211 :RWKITSI 1t6cA 136 :EVCVVDQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=37195 # 1vqoT.211.59 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)W212 (1vqoT)G60 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :R 1vqoT 59 :E T0506 213 :KITSIDP 1vqoT 61 :EVINVDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37197 # 1crzA.211.305 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)K213 (1crzA)Q314 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I214 (1crzA)D315 because L (left) conformation "forbidden" or filtered. T0506 211 :RW 1crzA 312 :QN T0506 215 :TSIDP 1crzA 316 :ADVSS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37199 # 1gpr.211.56 read from T0506.t04.many.frag # found chain 1gpr in template set Warning: unaligning (T0506)W212 (1gpr)G58 because Y (epsilon') conformation "forbidden" or filtered. T0506 211 :R 1gpr 57 :R T0506 213 :KITSIDP 1gpr 59 :KILNVFP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37201 # 2d28C.211.94 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)R211 (2d28C)H95 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)W212 (2d28C)L96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2d28C)G100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. T0506 213 :KIT 2d28C 97 :CPV T0506 217 :ID 2d28C 101 :ER Number of specific fragments extracted= 2 number of extra gaps= 3 total=37203 # 1ig0A.211.214 read from T0506.t04.many.frag # found chain 1ig0A in training set T0506 211 :RWKITSIDP 1ig0A 215 :YFKLCYMTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37204 # 1ux6A.212.269 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKIT 1ux6A 1072 :VRTL T0506 217 :IDPD 1ux6A 1077 :HDPR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37206 # 1ifrA.212.8 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 212 :WKITSIDPD 1ifrA 440 :VAVEEVDEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37207 # 1qhtA.212.533 read from T0506.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)D218 (1qhtA)D540 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKITSI 1qhtA 534 :FKVLYA T0506 219 :PD 1qhtA 541 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37209 # 2sak.212.60 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKIT 2sak 76 :FRVV T0506 217 :IDPD 2sak 81 :LDPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37211 # 1h2wA.212.289 read from T0506.t04.many.frag # found chain 1h2wA in training set T0506 212 :WKITSIDPD 1h2wA 290 :YDYVTNEGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37212 # 1zsqA.212.198 read from T0506.t04.many.frag # found chain 1zsqA in template set T0506 212 :WKITSIDPD 1zsqA 268 :PVLSWIHPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37213 # 1nycA.212.54 read from T0506.t04.many.frag # found chain 1nycA in training set T0506 212 :WKITSIDPD 1nycA 53 :YHILFIDTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37214 # 1rwhA.212.645 read from T0506.t04.many.frag # found chain 1rwhA in training set T0506 212 :WKITSIDPD 1rwhA 646 :YSVIRNDAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37215 # 1rypL.212.174 read from T0506.t04.many.frag # found chain 1rypL in template set T0506 212 :WKITSIDPD 1rypL 175 :VNLYHVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=37216 # 1ylnA.212.157 read from T0506.t04.many.frag # found chain 1ylnA in template set T0506 212 :WKITSIDPD 1ylnA 158 :CELRDLSRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37217 # 1i4uA.212.104 read from T0506.t04.many.frag # found chain 1i4uA in training set Warning: unaligning (T0506)P219 (1i4uA)Y112 because T (delta_L) conformation "forbidden" or filtered. T0506 212 :WKITSID 1i4uA 105 :LVILETD T0506 220 :D 1i4uA 113 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=37219 # 1zl0A.212.175 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)W212 (1zl0A)V174 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1zl0A)G178 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1zl0A)K181 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1zl0A)Q182 because P (beta_P) conformation "forbidden" or filtered. T0506 213 :KIT 1zl0A 175 :QHL T0506 217 :ID 1zl0A 179 :GH Number of specific fragments extracted= 2 number of extra gaps= 3 total=37221 # 1ykdA.212.234 read from T0506.t04.many.frag # found chain 1ykdA in template set T0506 212 :WKITSIDPD 1ykdA 292 :STLWLIDRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37222 # 1gpr.212.57 read from T0506.t04.many.frag # found chain 1gpr in template set Warning: unaligning (T0506)W212 (1gpr)G58 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KITSIDPD 1gpr 59 :KILNVFPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=37223 # 1kt6A.212.103 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)S216 (1kt6A)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 212 :WKIT 1kt6A 104 :HWII T0506 217 :I 1kt6A 109 :T T0506 220 :D 1kt6A 112 :E Number of specific fragments extracted= 3 number of extra gaps= 2 total=37226 # 1vqoT.212.60 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)W212 (1vqoT)G60 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)K213 (1vqoT)E61 because P (beta_P) conformation "forbidden" or filtered. T0506 214 :ITSIDPD 1vqoT 62 :VINVDLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37227 # 1ok7A.212.335 read from T0506.t04.many.frag # found chain 1ok7A in training set Warning: unaligning (T0506)D218 (1ok7A)D342 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKITSI 1ok7A 336 :VRMMLT T0506 219 :PD 1ok7A 343 :SV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37229 # 1gp0A.212.116 read from T0506.t04.many.frag # found chain 1gp0A in training set T0506 212 :WKITSIDPD 1gp0A 1624 :PMLISLDKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37230 # 1pbyB.212.281 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)D218 (1pbyB)S288 because P (beta_P) conformation "forbidden" or filtered. T0506 212 :WKITSI 1pbyB 282 :YYSVNV T0506 219 :PD 1pbyB 289 :TD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37232 # 1vjlA.212.86 read from T0506.t04.many.frag # found chain 1vjlA in template set Warning: unaligning (T0506)P219 (1vjlA)D82 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1vjlA)N83 because T (delta_L) conformation "forbidden" or filtered. T0506 212 :WKITSID 1vjlA 75 :VIIHSLK Number of specific fragments extracted= 1 number of extra gaps= 1 total=37233 # 1iruK.212.177 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)K213 (1iruK)S179 because P (beta_P) conformation "forbidden" or filtered. T0506 212 :W 1iruK 178 :F T0506 214 :ITSIDPD 1iruK 180 :VRIIDKN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37235 # 1y96A.212.31 read from T0506.t04.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)S216 (1y96A)T36 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKIT 1y96A 32 :GWVL T0506 217 :IDPD 1y96A 37 :TDPV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37237 # 1wqwA.212.201 read from T0506.t04.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)W212 (1wqwA)G202 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1wqwA 203 :IAE T0506 217 :IDPD 1wqwA 207 :IDDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=37239 # 1pjxA.212.269 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)I214 (1pjxA)N272 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WK 1pjxA 270 :PS T0506 215 :TSIDPD 1pjxA 273 :LHFKPQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37241 # 1tl2A.212.136 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 212 :WKIT 1tl2A 137 :FKFL T0506 217 :IDPD 1tl2A 142 :FHPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37243 # 1qftA.212.109 read from T0506.t04.many.frag # found chain 1qftA in training set T0506 212 :WKITSIDPD 1qftA 110 :DVIAYSDDN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37244 # 1ig0A.212.215 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D218 (1ig0A)T222 because E (beta_S) conformation "forbidden" or filtered. T0506 212 :WKITSI 1ig0A 216 :FKLCYM T0506 219 :PD 1ig0A 223 :PT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37246 2fn0A expands to /projects/compbio/data/pdb/2fn0.pdb.gz 2fn0A:Skipped atom 173, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1108, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1110, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1112, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1114, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1116, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1118, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 1120, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2397, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2399, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2401, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2403, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2405, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2407, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2409, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2530, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2532, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2534, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2536, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2538, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2540, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2542, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2544, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2861, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2863, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2865, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2867, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2869, because occupancy 0.500 <= existing 0.500 in 2fn0A Skipped atom 2871, because occupancy 0.500 <= existing 0.500 in 2fn0A # 2fn0A.212.376 read from T0506.t04.many.frag # adding 2fn0A to template set # found chain 2fn0A in template set T0506 212 :WKITSIDPD 2fn0A 374 :GAILLLDDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37247 # 2d28C.212.95 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)W212 (2d28C)L96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. T0506 213 :KITSID 2d28C 97 :CPVGER T0506 220 :D 2d28C 104 :G Number of specific fragments extracted= 2 number of extra gaps= 2 total=37249 # 1crzA.212.349 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)I214 (1crzA)T358 because L (left) conformation "forbidden" or filtered. T0506 212 :WK 1crzA 356 :DE T0506 215 :TSIDPD 1crzA 359 :PSLAPN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37251 # 1ifrA.213.9 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 213 :KITSIDPDG 1ifrA 441 :AVEEVDEEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37252 # 1qhtA.213.534 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 213 :KITSIDPDG 1qhtA 535 :KVLYADTDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37253 # 1ux6A.213.270 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1ux6A 1073 :RTL T0506 217 :IDPDG 1ux6A 1077 :HDPRH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37255 # 2sak.213.61 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)K213 (2sak)R77 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2sak)A85 because P (beta_P) conformation "forbidden" or filtered. T0506 214 :IT 2sak 78 :VV T0506 217 :IDPD 2sak 81 :LDPS Number of specific fragments extracted= 2 number of extra gaps= 3 total=37257 # 1y96A.213.32 read from T0506.t04.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)G221 (1y96A)S41 because G (3-10) conformation "forbidden" or filtered. T0506 213 :KITSIDPD 1y96A 33 :WVLTTDPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37258 # 1h2wA.213.290 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S216 (1h2wA)T294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1h2wA)G297 because S (epsilon) conformation "forbidden" or filtered. T0506 213 :KIT 1h2wA 291 :DYV T0506 217 :ID 1h2wA 295 :NE T0506 220 :DG 1h2wA 298 :TV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37261 # 1ykdA.213.235 read from T0506.t04.many.frag # found chain 1ykdA in template set T0506 213 :KITSIDPDG 1ykdA 293 :TLWLIDRDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37262 # 1vqoT.213.61 read from T0506.t04.many.frag # found chain 1vqoT in template set T0506 213 :KITSIDPDG 1vqoT 61 :EVINVDLDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37263 # 1rwhA.213.646 read from T0506.t04.many.frag # found chain 1rwhA in training set Warning: unaligning (T0506)G221 (1rwhA)A655 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KITSIDPD 1rwhA 647 :SVIRNDAT Number of specific fragments extracted= 1 number of extra gaps= 1 total=37264 # 1nycA.213.55 read from T0506.t04.many.frag # found chain 1nycA in training set T0506 213 :KITSIDPDG 1nycA 54 :HILFIDTAH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37265 # 1wqwA.213.202 read from T0506.t04.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1wqwA 203 :IAE T0506 217 :IDPDG 1wqwA 207 :IDDFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37267 # 1i4uA.213.105 read from T0506.t04.many.frag # found chain 1i4uA in training set Warning: unaligning (T0506)P219 (1i4uA)Y112 because T (delta_L) conformation "forbidden" or filtered. T0506 213 :KITSID 1i4uA 106 :VILETD T0506 220 :DG 1i4uA 113 :SN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37269 # 1crzA.213.350 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)I214 (1crzA)T358 because L (left) conformation "forbidden" or filtered. T0506 213 :K 1crzA 357 :E T0506 215 :TSIDPDG 1crzA 359 :PSLAPNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37271 # 1zsqA.213.199 read from T0506.t04.many.frag # found chain 1zsqA in template set Warning: unaligning (T0506)D218 (1zsqA)H274 because P (beta_P) conformation "forbidden" or filtered. T0506 213 :KITSI 1zsqA 269 :VLSWI T0506 219 :PDG 1zsqA 275 :PES Number of specific fragments extracted= 2 number of extra gaps= 1 total=37273 # 1kt6A.213.104 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)S216 (1kt6A)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 213 :KIT 1kt6A 105 :WII T0506 217 :I 1kt6A 109 :T T0506 220 :DG 1kt6A 112 :ET Number of specific fragments extracted= 3 number of extra gaps= 2 total=37276 # 1rypL.213.175 read from T0506.t04.many.frag # found chain 1rypL in template set T0506 213 :KITSIDPDG 1rypL 176 :NLYHVTEDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37277 # 2fn0A.213.377 read from T0506.t04.many.frag # found chain 2fn0A in template set T0506 213 :KITSIDPDG 2fn0A 375 :AILLLDDTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37278 # 1ylnA.213.158 read from T0506.t04.many.frag # found chain 1ylnA in template set T0506 213 :KITSIDPDG 1ylnA 159 :ELRDLSRSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37279 # 1pbyB.213.282 read from T0506.t04.many.frag # found chain 1pbyB in training set T0506 213 :KITSIDPDG 1pbyB 283 :YSVNVSTDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37280 # 1qftA.213.110 read from T0506.t04.many.frag # found chain 1qftA in training set T0506 213 :KITSIDPDG 1qftA 111 :VIAYSDDNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=37281 # 1iruK.213.178 read from T0506.t04.many.frag # found chain 1iruK in template set T0506 213 :KITSIDPDG 1iruK 179 :SVRIIDKNG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37282 # 1gpr.213.58 read from T0506.t04.many.frag # found chain 1gpr in template set T0506 213 :KITSIDPDG 1gpr 59 :KILNVFPTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37283 # 1pjxA.213.270 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)D220 (1pjxA)Q278 because T (delta_L) conformation "forbidden" or filtered. T0506 213 :KITSIDP 1pjxA 271 :SNLHFKP T0506 221 :G 1pjxA 279 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=37285 # 1tl2A.213.137 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 213 :KIT 1tl2A 138 :KFL T0506 217 :IDPDG 1tl2A 142 :FHPNG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37287 # 1zl0A.213.176 read from T0506.t04.many.frag # found chain 1zl0A in template set Warning: unaligning (T0506)I217 (1zl0A)G179 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1zl0A)K181 because G (3-10) conformation "forbidden" or filtered. T0506 213 :KITS 1zl0A 175 :QHLG T0506 218 :D 1zl0A 180 :H T0506 220 :DG 1zl0A 182 :QR Number of specific fragments extracted= 3 number of extra gaps= 2 total=37290 # 1ok7A.213.336 read from T0506.t04.many.frag # found chain 1ok7A in training set T0506 213 :KITSIDPDG 1ok7A 337 :RMMLTDSVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37291 # 1ig0A.213.216 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)G221 (1ig0A)D225 because E (beta_S) conformation "forbidden" or filtered. T0506 213 :KITSIDPD 1ig0A 217 :KLCYMTPT Number of specific fragments extracted= 1 number of extra gaps= 1 total=37292 # 1uh4A.213.556 read from T0506.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)K213 (1uh4A)M557 because E (beta_S) conformation "forbidden" or filtered. T0506 214 :ITSIDPDG 1uh4A 558 :TLITDDTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=37293 # 1zjcA.213.384 read from T0506.t04.many.frag # found chain 1zjcA in template set Warning: unaligning (T0506)D218 (1zjcA)G387 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1zjcA)S388 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1zjcA)D390 because G (3-10) conformation "forbidden" or filtered. T0506 213 :KITSI 1zjcA 382 :VDFMI T0506 220 :D 1zjcA 389 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=37295 # 1gp0A.213.117 read from T0506.t04.many.frag # found chain 1gp0A in training set T0506 213 :KITSIDPDG 1gp0A 1625 :MLISLDKQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37296 # 1ifrA.214.10 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 214 :ITSIDPDGI 1ifrA 442 :VEEVDEEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37297 # 1y96A.214.33 read from T0506.t04.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)S216 (1y96A)T36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. T0506 214 :IT 1y96A 34 :VL T0506 217 :IDPDG 1y96A 37 :TDPVS Number of specific fragments extracted= 2 number of extra gaps= 2 total=37299 # 1qhtA.214.535 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 214 :ITSIDPDGI 1qhtA 536 :VLYADTDGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37300 # 1ux6A.214.271 read from T0506.t04.many.frag # found chain 1ux6A in template set Warning: unaligning (T0506)S216 (1ux6A)W1076 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :IT 1ux6A 1074 :TL T0506 217 :IDPDGI 1ux6A 1077 :HDPRHI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37302 # 2fn0A.214.378 read from T0506.t04.many.frag # found chain 2fn0A in template set T0506 214 :ITSIDPDGI 2fn0A 376 :ILLLDDTRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37303 # 1h2wA.214.291 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S216 (1h2wA)T294 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1h2wA)G297 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1h2wA)V299 because N (gamma') conformation "forbidden" or filtered. T0506 214 :IT 1h2wA 292 :YV T0506 217 :ID 1h2wA 295 :NE T0506 220 :D 1h2wA 298 :T T0506 222 :I 1h2wA 300 :F Number of specific fragments extracted= 4 number of extra gaps= 3 total=37307 # 1wqwA.214.203 read from T0506.t04.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :IT 1wqwA 204 :AE T0506 217 :IDPDGI 1wqwA 207 :IDDFGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37309 # 1qftA.214.111 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)G221 (1qftA)C119 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :ITSIDPD 1qftA 112 :IAYSDDN T0506 222 :I 1qftA 120 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=37311 # 1pbyB.214.283 read from T0506.t04.many.frag # found chain 1pbyB in training set T0506 214 :ITSIDPDGI 1pbyB 284 :SVNVSTDGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37312 # 1go3E.214.88 read from T0506.t04.many.frag # found chain 1go3E in training set T0506 214 :ITSIDPDGI 1go3E 89 :VVDVVEFGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37313 # 1vqoT.214.62 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)G221 (1vqoT)K69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1vqoT)A70 because L (left) conformation "forbidden" or filtered. T0506 214 :ITSIDPD 1vqoT 62 :VINVDLD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37314 # 1kt6A.214.105 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)S216 (1kt6A)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 214 :IT 1kt6A 106 :II T0506 217 :I 1kt6A 109 :T T0506 220 :DGI 1kt6A 112 :ETF Number of specific fragments extracted= 3 number of extra gaps= 2 total=37317 # 1ykdA.214.236 read from T0506.t04.many.frag # found chain 1ykdA in template set T0506 214 :ITSIDPDGI 1ykdA 294 :LWLIDRDRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37318 # 1nycA.214.56 read from T0506.t04.many.frag # found chain 1nycA in training set T0506 214 :ITSIDPDGI 1nycA 55 :ILFIDTAHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37319 # 1rypL.214.176 read from T0506.t04.many.frag # found chain 1rypL in template set Warning: unaligning (T0506)G221 (1rypL)G184 because S (epsilon) conformation "forbidden" or filtered. T0506 214 :ITSIDPD 1rypL 177 :LYHVTED T0506 222 :I 1rypL 185 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=37321 # 1zsqA.214.200 read from T0506.t04.many.frag # found chain 1zsqA in template set T0506 214 :ITSIDPDGI 1zsqA 270 :LSWIHPESQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37322 # 2sak.214.62 read from T0506.t04.many.frag # found chain 2sak in training set Warning: unaligning (T0506)S216 (2sak)E80 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2sak)A85 because P (beta_P) conformation "forbidden" or filtered. T0506 214 :IT 2sak 78 :VV T0506 217 :IDPD 2sak 81 :LDPS T0506 222 :I 2sak 86 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=37325 # 1ix9A.214.129 read from T0506.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)I214 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ix9A)L131 Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ix9A)L131 Warning: unaligning (T0506)P219 (1ix9A)G135 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1ix9A)K137 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SID 1ix9A 132 :VLK T0506 220 :D 1ix9A 136 :D T0506 222 :I 1ix9A 138 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=37328 # 1crzA.214.351 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)I214 (1crzA)T358 because L (left) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1crzA 359 :PSLAPNGT Number of specific fragments extracted= 1 number of extra gaps= 1 total=37329 # 1uh4A.214.557 read from T0506.t04.many.frag # found chain 1uh4A in template set Warning: unaligning (T0506)I222 (1uh4A)K566 because L (left) conformation "forbidden" or filtered. T0506 214 :ITSIDPDG 1uh4A 558 :TLITDDTN Number of specific fragments extracted= 1 number of extra gaps= 1 total=37330 # 1tl2A.214.138 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1tl2A)H143 because P (beta_P) conformation "forbidden" or filtered. T0506 214 :IT 1tl2A 139 :FL T0506 217 :I 1tl2A 142 :F T0506 219 :PDGI 1tl2A 144 :PNGY Number of specific fragments extracted= 3 number of extra gaps= 2 total=37333 # 2d28C.214.97 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)S216 (2d28C)G100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (2d28C)G104 because T (delta_L) conformation "forbidden" or filtered. T0506 214 :IT 2d28C 98 :PV T0506 217 :ID 2d28C 101 :ER T0506 221 :GI 2d28C 105 :RL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37336 # 1ylnA.214.159 read from T0506.t04.many.frag # found chain 1ylnA in template set T0506 214 :ITSIDPDGI 1ylnA 160 :LRDLSRSGC Number of specific fragments extracted= 1 number of extra gaps= 0 total=37337 # 1i4uA.214.106 read from T0506.t04.many.frag # found chain 1i4uA in training set Warning: unaligning (T0506)P219 (1i4uA)Y112 because T (delta_L) conformation "forbidden" or filtered. T0506 214 :ITSID 1i4uA 107 :ILETD T0506 220 :DGI 1i4uA 113 :SNY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37339 # 1ig0A.214.217 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D218 (1ig0A)T222 because E (beta_S) conformation "forbidden" or filtered. T0506 214 :ITSI 1ig0A 218 :LCYM T0506 219 :PDGI 1ig0A 223 :PTDL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37341 # 1u9iA.214.235 read from T0506.t04.many.frag # found chain 1u9iA in template set T0506 214 :ITSIDPDGI 1u9iA 236 :PFTITDHGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37342 # 1wycA.214.339 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)G342 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)G342 T0506 214 :I 1wycA 340 :V T0506 217 :IDPDGI 1wycA 343 :IGIHGQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37344 # 1iruK.214.179 read from T0506.t04.many.frag # found chain 1iruK in template set T0506 214 :ITSIDPDGI 1iruK 180 :VRIIDKNGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37345 # 1rwhA.214.647 read from T0506.t04.many.frag # found chain 1rwhA in training set T0506 214 :ITSIDPDGI 1rwhA 648 :VIRNDATAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37346 # 1pjxA.214.271 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)D218 (1pjxA)K276 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1pjxA)Q278 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1pjxA)T279 because Y (epsilon') conformation "forbidden" or filtered. T0506 214 :ITSI 1pjxA 272 :NLHF T0506 219 :P 1pjxA 277 :P T0506 222 :I 1pjxA 280 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=37349 # 1qhtA.215.536 read from T0506.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)D218 (1qhtA)D540 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1qhtA)H545 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSI 1qhtA 537 :LYA T0506 219 :PDGI 1qhtA 541 :TDGL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37351 # 1go3E.215.89 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)D223 (1go3E)F98 because P (beta_P) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1go3E 90 :VDVVEFGS Number of specific fragments extracted= 1 number of extra gaps= 1 total=37352 # 2fn0A.215.379 read from T0506.t04.many.frag # found chain 2fn0A in template set T0506 215 :TSIDPDGID 2fn0A 377 :LLLDDTRFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37353 # 1qftA.215.112 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)D218 (1qftA)D116 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSI 1qftA 113 :AYS T0506 219 :PDGID 1qftA 117 :DNCDV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37355 # 1h2wA.215.292 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)P219 (1h2wA)G297 because S (epsilon) conformation "forbidden" or filtered. T0506 215 :TSID 1h2wA 293 :VTNE T0506 220 :DGID 1h2wA 298 :TVFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37357 # 1y96A.215.34 read from T0506.t04.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)S216 (1y96A)T36 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. T0506 215 :T 1y96A 35 :L T0506 217 :IDPDG 1y96A 37 :TDPVS T0506 223 :D 1y96A 43 :N Number of specific fragments extracted= 3 number of extra gaps= 2 total=37360 # 1wqwA.215.204 read from T0506.t04.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1wqwA)L213 because P (beta_P) conformation "forbidden" or filtered. T0506 215 :T 1wqwA 205 :E T0506 217 :IDPDGI 1wqwA 207 :IDDFGR Number of specific fragments extracted= 2 number of extra gaps= 2 total=37362 # 1wycA.215.340 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)G342 Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)G342 Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 T0506 217 :IDPDGI 1wycA 343 :IGIHGQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=37363 # 1ifrA.215.11 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 215 :TSIDPDGID 1ifrA 443 :EEVDEEGKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37364 # 1pbyB.215.284 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)D218 (1pbyB)S288 because P (beta_P) conformation "forbidden" or filtered. T0506 215 :TSI 1pbyB 285 :VNV T0506 219 :PDGID 1pbyB 289 :TDGST Number of specific fragments extracted= 2 number of extra gaps= 1 total=37366 # 1u9iA.215.236 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)D223 (1u9iA)N245 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1u9iA 237 :FTITDHGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37367 # 1vqoT.215.63 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)G221 (1vqoT)K69 because G (3-10) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1vqoT 63 :INVDLD T0506 222 :ID 1vqoT 70 :AV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37369 # 1kt6A.215.106 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)S216 (1kt6A)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 215 :T 1kt6A 107 :I T0506 217 :I 1kt6A 109 :T T0506 220 :DGID 1kt6A 112 :ETFA Number of specific fragments extracted= 3 number of extra gaps= 2 total=37372 # 1rypL.215.177 read from T0506.t04.many.frag # found chain 1rypL in template set Warning: unaligning (T0506)D223 (1rypL)I186 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1rypL 178 :YHVTEDGW Number of specific fragments extracted= 1 number of extra gaps= 1 total=37373 # 1tl2A.215.139 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. T0506 215 :T 1tl2A 140 :L T0506 217 :IDPDGID 1tl2A 142 :FHPNGYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37375 # 2d28C.215.98 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)S216 (2d28C)G100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (2d28C)R102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. T0506 215 :T 2d28C 99 :V T0506 217 :I 2d28C 101 :E T0506 220 :DGID 2d28C 104 :GRLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=37378 # 1ix9A.215.130 read from T0506.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)T215 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ix9A)L131 Warning: unaligning (T0506)P219 (1ix9A)G135 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1ix9A)K137 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SID 1ix9A 132 :VLK T0506 220 :D 1ix9A 136 :D T0506 222 :ID 1ix9A 138 :LA Number of specific fragments extracted= 3 number of extra gaps= 3 total=37381 # 1ykdA.215.237 read from T0506.t04.many.frag # found chain 1ykdA in template set T0506 215 :TSIDPDGID 1ykdA 295 :WLIDRDRHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37382 # 1zr6A.215.251 read from T0506.t04.many.frag # found chain 1zr6A in template set T0506 215 :TSIDPDGID 1zr6A 246 :LEINANALN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37383 # 1nycA.215.57 read from T0506.t04.many.frag # found chain 1nycA in training set Warning: unaligning (T0506)G221 (1nycA)H62 because G (3-10) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1nycA 56 :LFIDTA T0506 222 :ID 1nycA 63 :QR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37385 1wckA expands to /projects/compbio/data/pdb/1wck.pdb.gz 1wckA:Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 13, because occupancy 0.400 <= existing 0.500 in 1wckA Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 238, because occupancy 0.300 <= existing 0.700 in 1wckA Skipped atom 240, because occupancy 0.300 <= existing 0.700 in 1wckA Skipped atom 242, because occupancy 0.300 <= existing 0.700 in 1wckA Skipped atom 244, because occupancy 0.300 <= existing 0.700 in 1wckA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 354, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 420, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 422, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 437, because occupancy 0.300 <= existing 0.700 in 1wckA Skipped atom 439, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 938, because occupancy 0.500 <= existing 0.500 in 1wckA Skipped atom 940, because occupancy 0.400 <= existing 0.400 in 1wckA Skipped atom 942, because occupancy 0.400 <= existing 0.400 in 1wckA Skipped atom 944, because occupancy 0.400 <= existing 0.400 in 1wckA # 1wckA.215.190 read from T0506.t04.many.frag # adding 1wckA to template set # found chain 1wckA in template set Warning: unaligning (T0506)D218 (1wckA)T194 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSI 1wckA 191 :VIV T0506 219 :PDGID 1wckA 195 :GLGLS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37387 # 1iruK.215.180 read from T0506.t04.many.frag # found chain 1iruK in template set Warning: unaligning (T0506)T215 (1iruK)R181 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SIDPDGID 1iruK 182 :IIDKNGIH Number of specific fragments extracted= 1 number of extra gaps= 1 total=37388 # 1dkiA.215.304 read from T0506.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)D218 (1dkiA)G190 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSI 1dkiA 187 :QGV T0506 219 :PDGID 1dkiA 191 :KVGGH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37390 # 1ylnA.215.160 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)D218 (1ylnA)S164 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSI 1ylnA 161 :RDL T0506 219 :PDGID 1ylnA 165 :RSGCR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37392 # 1zjcA.215.386 read from T0506.t04.many.frag # found chain 1zjcA in template set Warning: unaligning (T0506)P219 (1zjcA)S388 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1zjcA)D390 because G (3-10) conformation "forbidden" or filtered. T0506 215 :TSID 1zjcA 384 :FMIG T0506 220 :D 1zjcA 389 :S T0506 222 :ID 1zjcA 391 :LT Number of specific fragments extracted= 3 number of extra gaps= 2 total=37395 # 1i4uA.215.107 read from T0506.t04.many.frag # found chain 1i4uA in training set Warning: unaligning (T0506)P219 (1i4uA)Y112 because T (delta_L) conformation "forbidden" or filtered. T0506 215 :TSID 1i4uA 108 :LETD T0506 220 :DGID 1i4uA 113 :SNYA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37397 # 1ig0A.215.218 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)G221 (1ig0A)D225 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1ig0A)I227 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPD 1ig0A 219 :CYMTPT T0506 222 :I 1ig0A 226 :L Number of specific fragments extracted= 2 number of extra gaps= 2 total=37399 # 1wthD.215.187 read from T0506.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)S216 (1wthD)W189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 Warning: unaligning (T0506)G221 (1wthD)G194 because S (epsilon) conformation "forbidden" or filtered. T0506 215 :T 1wthD 188 :V T0506 217 :ID 1wthD 190 :QD T0506 222 :ID 1wthD 195 :VN Number of specific fragments extracted= 3 number of extra gaps= 2 total=37402 # 2afaA.215.301 read from T0506.t04.many.frag # found chain 2afaA in template set T0506 215 :TSIDPDGID 2afaA 302 :YSVDWDGKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37403 # 1woqA.215.16 read from T0506.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0506)D223 (1woqA)K25 because E (beta_S) conformation "forbidden" or filtered. T0506 215 :TSIDPDGI 1woqA 17 :IDIGGTGI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37404 # 1go3E.216.90 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)D223 (1go3E)F98 because P (beta_P) conformation "forbidden" or filtered. T0506 216 :SIDPDGI 1go3E 91 :DVVEFGS T0506 224 :L 1go3E 99 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=37406 # 1qhtA.216.537 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 216 :SIDPDGIDL 1qhtA 538 :YADTDGLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37407 # 2fn0A.216.380 read from T0506.t04.many.frag # found chain 2fn0A in template set Warning: unaligning (T0506)G221 (2fn0A)R383 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SIDPD 2fn0A 378 :LLDDT T0506 222 :IDL 2fn0A 384 :FDA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37409 # 1qftA.216.113 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)D218 (1qftA)D116 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1qftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SI 1qftA 114 :YS T0506 219 :PDGI 1qftA 117 :DNCD T0506 224 :L 1qftA 122 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=37412 # 1wycA.216.341 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)S216 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)G342 Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 T0506 217 :IDPDGI 1wycA 343 :IGIHGQ Number of specific fragments extracted= 1 number of extra gaps= 2 total=37413 # 1u9iA.216.237 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)G221 (1u9iA)G243 because S (epsilon) conformation "forbidden" or filtered. T0506 216 :SIDPD 1u9iA 238 :TITDH T0506 222 :IDL 1u9iA 244 :INI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37415 # 1h2wA.216.293 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S216 (1h2wA)T294 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGIDL 1h2wA 295 :NEGTVFTF Number of specific fragments extracted= 1 number of extra gaps= 1 total=37416 # 1pbyB.216.285 read from T0506.t04.many.frag # found chain 1pbyB in training set T0506 216 :SIDPDGIDL 1pbyB 286 :NVSTDGSTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37417 # 2f02A.216.224 read from T0506.t04.many.frag # found chain 2f02A in template set T0506 216 :SIDPDGIDL 2f02A 223 :SLGKDGAIA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37418 # 1ylnA.216.161 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)D218 (1ylnA)S164 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SI 1ylnA 162 :DL T0506 219 :PDGIDL 1ylnA 165 :RSGCRF Number of specific fragments extracted= 2 number of extra gaps= 1 total=37420 # 1wthD.216.188 read from T0506.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)S216 (1wthD)W189 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 T0506 217 :ID 1wthD 190 :QD T0506 221 :GIDL 1wthD 194 :GVNM Number of specific fragments extracted= 2 number of extra gaps= 2 total=37422 # 1vqoT.216.64 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)G221 (1vqoT)K69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1vqoT)A70 because L (left) conformation "forbidden" or filtered. T0506 216 :SIDPD 1vqoT 64 :NVDLD T0506 223 :DL 1vqoT 71 :VI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37424 # 1dkiA.216.305 read from T0506.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)D223 (1dkiA)H195 because D (zeta) conformation "forbidden" or filtered. T0506 216 :SIDPDGI 1dkiA 188 :GVGKVGG T0506 224 :L 1dkiA 196 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=37426 # 1rypL.216.178 read from T0506.t04.many.frag # found chain 1rypL in template set T0506 216 :SIDPDGIDL 1rypL 179 :HVTEDGWIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37427 # 1wqwA.216.205 read from T0506.t04.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)S216 (1wqwA)D206 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGIDL 1wqwA 207 :IDDFGRLI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37428 # 2d28C.216.99 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)S216 (2d28C)G100 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2d28C)R105 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :ID 2d28C 101 :ER T0506 220 :D 2d28C 104 :G T0506 222 :IDL 2d28C 106 :LDL Number of specific fragments extracted= 3 number of extra gaps= 3 total=37431 # 1y96A.216.35 read from T0506.t04.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)G221 (1y96A)S41 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. T0506 216 :SIDPD 1y96A 36 :TTDPV T0506 223 :DL 1y96A 43 :NI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37433 # 1yllA.216.144 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1yllA)A150 because P (beta_P) conformation "forbidden" or filtered. T0506 216 :SID 1yllA 143 :FAQ T0506 220 :DGI 1yllA 147 :DGV T0506 224 :L 1yllA 151 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=37436 # 1ifrA.216.12 read from T0506.t04.many.frag # found chain 1ifrA in training set T0506 216 :SIDPDGIDL 1ifrA 444 :EVDEEGKFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37437 # 1zr6A.216.252 read from T0506.t04.many.frag # found chain 1zr6A in template set Warning: unaligning (T0506)G221 (1zr6A)A252 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SIDPD 1zr6A 247 :EINAN T0506 222 :IDL 1zr6A 253 :LNW Number of specific fragments extracted= 2 number of extra gaps= 1 total=37439 # 1wckA.216.191 read from T0506.t04.many.frag # found chain 1wckA in template set T0506 216 :SIDPDGIDL 1wckA 192 :IVTGLGLSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37440 # 1kt6A.216.107 read from T0506.t04.many.frag # found chain 1kt6A in training set Warning: unaligning (T0506)S216 (1kt6A)D108 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 because of BadResidue code BAD_PEPTIDE in next template residue (1kt6A)Y111 Warning: unaligning (T0506)P219 because of BadResidue code BAD_PEPTIDE at template residue (1kt6A)Y111 T0506 217 :I 1kt6A 109 :T T0506 220 :DGIDL 1kt6A 112 :ETFAV Number of specific fragments extracted= 2 number of extra gaps= 2 total=37442 # 1mswD.216.726 read from T0506.t04.many.frag # found chain 1mswD in template set Warning: unaligning (T0506)S216 (1mswD)W727 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGIDL 1mswD 728 :VTPDGFPV Number of specific fragments extracted= 1 number of extra gaps= 1 total=37443 # 1ykdA.216.238 read from T0506.t04.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)G221 (1ykdA)R301 because G (3-10) conformation "forbidden" or filtered. T0506 216 :SIDPD 1ykdA 296 :LIDRD T0506 222 :IDL 1ykdA 302 :HEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37445 # 1tl2A.216.140 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)S216 (1tl2A)F141 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D218 (1tl2A)H143 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :I 1tl2A 142 :F T0506 219 :PDGIDL 1tl2A 144 :PNGYLY Number of specific fragments extracted= 2 number of extra gaps= 2 total=37447 # 1ix9A.216.131 read from T0506.t04.many.frag # found chain 1ix9A in training set Warning: unaligning (T0506)P219 (1ix9A)G135 because S (epsilon) conformation "forbidden" or filtered. T0506 216 :SID 1ix9A 132 :VLK T0506 220 :DGIDL 1ix9A 136 :DKLAV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37449 # 1k3bA.216.61 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)P219 (1k3bA)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1k3bA)G67 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SID 1k3bA 62 :IIY T0506 220 :D 1k3bA 66 :Q T0506 222 :IDL 1k3bA 68 :FEI Number of specific fragments extracted= 3 number of extra gaps= 2 total=37452 # 1fy7A.216.120 read from T0506.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0506)D218 (1fy7A)D280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1fy7A)H285 because E (beta_S) conformation "forbidden" or filtered. T0506 216 :SI 1fy7A 278 :RR T0506 219 :PDGI 1fy7A 281 :ELGH T0506 224 :L 1fy7A 286 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=37455 # 1woqA.216.17 read from T0506.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0506)L224 (1woqA)G26 because Y (epsilon') conformation "forbidden" or filtered. T0506 216 :SIDPDGID 1woqA 18 :DIGGTGIK Number of specific fragments extracted= 1 number of extra gaps= 1 total=37456 # 1ig0A.216.219 read from T0506.t04.many.frag # found chain 1ig0A in training set T0506 216 :SIDPDGIDL 1ig0A 220 :YMTPTDLIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37457 # 1go3E.217.91 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)D218 (1go3E)V93 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 1go3E 92 :V T0506 219 :PDGIDLA 1go3E 94 :EFGSFVR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37459 # 1qhtA.217.538 read from T0506.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)D218 (1qhtA)D540 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1qhtA)H545 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 1qhtA 539 :A T0506 219 :PDGI 1qhtA 541 :TDGL T0506 224 :LA 1qhtA 546 :AT Number of specific fragments extracted= 3 number of extra gaps= 2 total=37462 # 2f02A.217.225 read from T0506.t04.many.frag # found chain 2f02A in template set T0506 217 :IDPDGIDLA 2f02A 224 :LGKDGAIAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37463 # 1wycA.217.342 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 T0506 217 :IDPDGI 1wycA 343 :IGIHGQ T0506 225 :A 1wycA 351 :W Number of specific fragments extracted= 2 number of extra gaps= 1 total=37465 # 2fn0A.217.381 read from T0506.t04.many.frag # found chain 2fn0A in template set Warning: unaligning (T0506)L224 (2fn0A)A386 because D (zeta) conformation "forbidden" or filtered. T0506 217 :IDPDGID 2fn0A 379 :LDDTRFD T0506 225 :A 2fn0A 387 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=37467 # 1qftA.217.114 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)D218 (1qftA)D116 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 1qftA 115 :S T0506 219 :PDGIDLA 1qftA 117 :DNCDVIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37469 # 1wthD.217.189 read from T0506.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 Warning: unaligning (T0506)A225 (1wthD)M198 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :ID 1wthD 190 :QD T0506 221 :GIDL 1wthD 194 :GVNM Number of specific fragments extracted= 2 number of extra gaps= 2 total=37471 # 1u9iA.217.238 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)D223 (1u9iA)N245 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :IDPDGI 1u9iA 239 :ITDHGI T0506 224 :LA 1u9iA 246 :IF Number of specific fragments extracted= 2 number of extra gaps= 1 total=37473 # 1yllA.217.145 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :ID 1yllA 144 :AQ T0506 220 :DGIDLA 1yllA 147 :DGVAIS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37475 # 1h2wA.217.294 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)D218 (1h2wA)E296 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (1h2wA)G297 because S (epsilon) conformation "forbidden" or filtered. T0506 217 :I 1h2wA 295 :N T0506 220 :DGIDLA 1h2wA 298 :TVFTFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37477 # 1ylnA.217.162 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)G221 (1ylnA)G167 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPD 1ylnA 163 :LSRS T0506 222 :IDLA 1ylnA 168 :CRFI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37479 # 1k3bA.217.62 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)P219 (1k3bA)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1k3bA)E69 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :ID 1k3bA 63 :IY T0506 220 :DGI 1k3bA 66 :QGF T0506 224 :LA 1k3bA 70 :IV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37482 # 1pbyB.217.286 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)I222 (1pbyB)S292 because G (3-10) conformation "forbidden" or filtered. T0506 217 :IDPDG 1pbyB 287 :VSTDG T0506 223 :DLA 1pbyB 293 :TVW Number of specific fragments extracted= 2 number of extra gaps= 1 total=37484 # 1xodA.217.76 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)D223 (1xodA)H88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L224 (1xodA)W89 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGI 1xodA 82 :VTPTFH T0506 225 :A 1xodA 90 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=37486 # 1vqoT.217.65 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)G221 (1vqoT)K69 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1vqoT)A70 because L (left) conformation "forbidden" or filtered. T0506 217 :IDPD 1vqoT 65 :VDLD T0506 223 :DLA 1vqoT 71 :VIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37488 # 2d28C.217.100 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)D218 (2d28C)R102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. T0506 217 :I 2d28C 101 :E T0506 220 :DGIDLA 2d28C 104 :GRLDLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=37490 # 1tl2A.217.141 read from T0506.t04.many.frag # found chain 1tl2A in template set T0506 217 :IDPDGIDLA 1tl2A 142 :FHPNGYLYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37491 # 1wckA.217.192 read from T0506.t04.many.frag # found chain 1wckA in template set T0506 217 :IDPDGIDLA 1wckA 193 :VTGLGLSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37492 # 1y96A.217.36 read from T0506.t04.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)D223 (1y96A)N43 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :IDPDGI 1y96A 37 :TDPVSA T0506 224 :LA 1y96A 44 :IV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37494 # 1wqwA.217.206 read from T0506.t04.many.frag # found chain 1wqwA in template set Warning: unaligning (T0506)D223 (1wqwA)L213 because P (beta_P) conformation "forbidden" or filtered. T0506 217 :IDPDGI 1wqwA 207 :IDDFGR T0506 224 :LA 1wqwA 214 :II Number of specific fragments extracted= 2 number of extra gaps= 1 total=37496 # 1dkiA.217.306 read from T0506.t04.many.frag # found chain 1dkiA in training set Warning: unaligning (T0506)A225 (1dkiA)F197 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGIDL 1dkiA 189 :VGKVGGHA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37497 # 1ifrA.217.13 read from T0506.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0506)D223 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :IDPDGI 1ifrA 445 :VDEEGK T0506 224 :LA 1ifrA 452 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37499 # 1mswD.217.727 read from T0506.t04.many.frag # found chain 1mswD in template set T0506 217 :IDPDGIDLA 1mswD 728 :VTPDGFPVW Number of specific fragments extracted= 1 number of extra gaps= 0 total=37500 # 1zr6A.217.253 read from T0506.t04.many.frag # found chain 1zr6A in template set Warning: unaligning (T0506)D218 (1zr6A)N249 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1zr6A)E256 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :I 1zr6A 248 :I T0506 219 :PDGIDL 1zr6A 250 :ANALNW Number of specific fragments extracted= 2 number of extra gaps= 2 total=37502 # 1ig0A.217.220 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D218 (1ig0A)T222 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L224 (1ig0A)F228 because Y (epsilon') conformation "forbidden" or filtered. T0506 217 :I 1ig0A 221 :M T0506 219 :PDGID 1ig0A 223 :PTDLI T0506 225 :A 1ig0A 229 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=37505 # 1rypL.217.179 read from T0506.t04.many.frag # found chain 1rypL in template set T0506 217 :IDPDGIDLA 1rypL 180 :VTEDGWIYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37506 # 1v04A.217.335 read from T0506.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0506)P219 (1v04A)K338 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (1v04A)G339 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1v04A)K340 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :ID 1v04A 336 :VY T0506 222 :IDLA 1v04A 341 :LLIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37508 # 1ysrA.217.72 read from T0506.t04.many.frag # found chain 1ysrA in template set Warning: unaligning (T0506)D218 (1ysrA)S370 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1ysrA)E375 because E (beta_S) conformation "forbidden" or filtered. T0506 217 :I 1ysrA 369 :S T0506 219 :PDGI 1ysrA 371 :RAGV T0506 224 :LA 1ysrA 376 :IA Number of specific fragments extracted= 3 number of extra gaps= 2 total=37511 # 1woqA.217.18 read from T0506.t04.many.frag # found chain 1woqA in training set T0506 217 :IDPDGIDLA 1woqA 19 :IGGTGIKGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37512 # 1ykdA.217.239 read from T0506.t04.many.frag # found chain 1ykdA in template set Warning: unaligning (T0506)G221 (1ykdA)R301 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)I222 (1ykdA)H302 because L (left) conformation "forbidden" or filtered. T0506 217 :IDPD 1ykdA 297 :IDRD T0506 223 :DLA 1ykdA 303 :ELW Number of specific fragments extracted= 2 number of extra gaps= 1 total=37514 # 1go3E.218.92 read from T0506.t04.many.frag # found chain 1go3E in training set T0506 218 :DPDGIDLAS 1go3E 93 :VEFGSFVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37515 # 2f02A.218.226 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)G221 (2f02A)G228 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (2f02A)K232 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :DPD 2f02A 225 :GKD T0506 222 :IDL 2f02A 229 :AIA T0506 226 :S 2f02A 233 :H Number of specific fragments extracted= 3 number of extra gaps= 2 total=37518 # 1wthD.218.190 read from T0506.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 Warning: unaligning (T0506)G221 (1wthD)G194 because S (epsilon) conformation "forbidden" or filtered. T0506 218 :D 1wthD 191 :D T0506 222 :IDLAS 1wthD 195 :VNMMD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37520 # 1wycA.218.343 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 T0506 218 :DPDGI 1wycA 344 :GIHGQ T0506 225 :AS 1wycA 351 :WL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37522 # 1qhtA.218.539 read from T0506.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)G221 (1qhtA)G543 because Y (epsilon') conformation "forbidden" or filtered. T0506 218 :DPD 1qhtA 540 :DTD T0506 222 :IDLAS 1qhtA 544 :LHATI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37524 # 1k3bA.218.63 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)P219 (1k3bA)N65 because G (3-10) conformation "forbidden" or filtered. T0506 218 :D 1k3bA 64 :Y T0506 220 :DGIDLAS 1k3bA 66 :QGFEIVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37526 # 1ylnA.218.163 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)D223 (1ylnA)R169 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :DPDGI 1ylnA 164 :SRSGC T0506 224 :LAS 1ylnA 170 :FIT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37528 # 1pbyB.218.287 read from T0506.t04.many.frag # found chain 1pbyB in training set T0506 218 :DPDGIDLAS 1pbyB 288 :STDGSTVWL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37529 # 1crzA.218.355 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)D218 (1crzA)A362 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1crzA)Y370 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PDGIDLA 1crzA 363 :PNGTMVI Number of specific fragments extracted= 1 number of extra gaps= 2 total=37530 # 1mswD.218.728 read from T0506.t04.many.frag # found chain 1mswD in template set T0506 218 :DPDGIDLAS 1mswD 729 :TPDGFPVWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=37531 # 2fn0A.218.382 read from T0506.t04.many.frag # found chain 2fn0A in template set Warning: unaligning (T0506)D218 (2fn0A)D380 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2fn0A)R383 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (2fn0A)A387 because P (beta_P) conformation "forbidden" or filtered. T0506 219 :PD 2fn0A 381 :DT T0506 222 :IDL 2fn0A 384 :FDA T0506 226 :S 2fn0A 388 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=37534 # 1yllA.218.146 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :D 1yllA 145 :Q T0506 220 :DGIDLAS 1yllA 147 :DGVAISL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37536 # 1qftA.218.115 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)G221 (1qftA)C119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1qftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0506 218 :DPD 1qftA 116 :DDN T0506 222 :I 1qftA 120 :D T0506 224 :LAS 1qftA 122 :IYV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37539 # 1vqoT.218.66 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)I222 (1vqoT)A70 because L (left) conformation "forbidden" or filtered. T0506 218 :DPDG 1vqoT 66 :DLDK T0506 223 :DLAS 1vqoT 71 :VIHV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37541 # 1tl2A.218.142 read from T0506.t04.many.frag # found chain 1tl2A in template set T0506 218 :DPDGIDLAS 1tl2A 143 :HPNGYLYAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37542 # 1wckA.218.193 read from T0506.t04.many.frag # found chain 1wckA in template set Warning: unaligning (T0506)P219 (1wckA)G195 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1wckA)A201 because P (beta_P) conformation "forbidden" or filtered. T0506 218 :D 1wckA 194 :T T0506 220 :DGIDL 1wckA 196 :LGLSL T0506 226 :S 1wckA 202 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=37545 # 1xodA.218.77 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)D218 (1xodA)T83 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1xodA)F86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L224 (1xodA)W89 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PD 1xodA 84 :PT T0506 222 :ID 1xodA 87 :HH T0506 225 :AS 1xodA 90 :RI Number of specific fragments extracted= 3 number of extra gaps= 3 total=37548 # 1u9iA.218.239 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)D218 (1u9iA)T240 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1u9iA)G243 because S (epsilon) conformation "forbidden" or filtered. T0506 219 :PD 1u9iA 241 :DH T0506 222 :IDLAS 1u9iA 244 :INIFP Number of specific fragments extracted= 2 number of extra gaps= 2 total=37550 # 1ig0A.218.221 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L224 (1ig0A)F228 because Y (epsilon') conformation "forbidden" or filtered. T0506 218 :DPDGID 1ig0A 222 :TPTDLI T0506 225 :AS 1ig0A 229 :LI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37552 # 1wqwA.218.207 read from T0506.t04.many.frag # found chain 1wqwA in template set T0506 218 :DPDGIDLAS 1wqwA 208 :DDFGRLIIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37553 # 1ifrA.218.14 read from T0506.t04.many.frag # found chain 1ifrA in training set Warning: unaligning (T0506)D223 (1ifrA)F451 because Y (epsilon') conformation "forbidden" or filtered. T0506 218 :DPDGI 1ifrA 446 :DEEGK T0506 224 :LAS 1ifrA 452 :VRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37555 # 1dkiA.218.307 read from T0506.t04.many.frag # found chain 1dkiA in training set T0506 218 :DPDGIDLAS 1dkiA 190 :GKVGGHAFV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37556 # 1h2wA.218.295 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)D218 (1h2wA)E296 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1h2wA)V299 because N (gamma') conformation "forbidden" or filtered. T0506 219 :PD 1h2wA 297 :GT T0506 222 :IDLAS 1h2wA 300 :FTFKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=37558 # 1xksA.218.283 read from T0506.t04.many.frag # found chain 1xksA in template set Warning: unaligning (T0506)D218 (1xksA)N348 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1xksA)V353 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1xksA)L355 because P (beta_P) conformation "forbidden" or filtered. T0506 219 :PDGI 1xksA 349 :CDGL T0506 224 :L 1xksA 354 :I T0506 226 :S 1xksA 356 :A Number of specific fragments extracted= 3 number of extra gaps= 3 total=37561 # 1woqA.218.19 read from T0506.t04.many.frag # found chain 1woqA in training set Warning: unaligning (T0506)G221 (1woqA)G23 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L224 (1woqA)G26 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1woqA)G27 because Y (epsilon') conformation "forbidden" or filtered. T0506 218 :DPD 1woqA 20 :GGT T0506 222 :ID 1woqA 24 :IK T0506 226 :S 1woqA 28 :I Number of specific fragments extracted= 3 number of extra gaps= 2 total=37564 # 2f2hA.218.754 read from T0506.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0506)D218 (2f2hA)S755 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (2f2hA)G758 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (2f2hA)V760 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (2f2hA)P763 because P (beta_P) conformation "forbidden" or filtered. T0506 219 :PD 2f2hA 756 :EQ T0506 222 :I 2f2hA 759 :L T0506 224 :LA 2f2hA 761 :VK Number of specific fragments extracted= 3 number of extra gaps= 4 total=37567 # 2d28C.218.101 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)D218 (2d28C)R102 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 2d28C 104 :GRLDLWI Number of specific fragments extracted= 1 number of extra gaps= 1 total=37568 # 1w1hA.218.104 read from T0506.t04.many.frag # found chain 1w1hA in training set Warning: unaligning (T0506)D218 (1w1hA)N510 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 1w1hA 511 :FKTFFVHT Number of specific fragments extracted= 1 number of extra gaps= 1 total=37569 # 1y96A.218.37 read from T0506.t04.many.frag # found chain 1y96A in template set Warning: unaligning (T0506)I222 (1y96A)A42 because L (left) conformation "forbidden" or filtered. T0506 218 :DPDG 1y96A 38 :DPVS T0506 223 :DLAS 1y96A 43 :NIVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37571 # 1fy7A.218.122 read from T0506.t04.many.frag # found chain 1fy7A in template set Warning: unaligning (T0506)D218 (1fy7A)D280 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1fy7A)G283 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1fy7A)G288 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PD 1fy7A 281 :EL T0506 222 :IDLA 1fy7A 284 :HHLV Number of specific fragments extracted= 2 number of extra gaps= 3 total=37573 # 1go3E.219.93 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)G221 (1go3E)G96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PD 1go3E 94 :EF T0506 222 :IDLAS 1go3E 97 :SFVRL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37575 # 2f02A.219.227 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)D223 (2f02A)I230 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (2f02A)H233 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 219 :PDGI 2f02A 226 :KDGA T0506 224 :LA 2f02A 231 :AK Number of specific fragments extracted= 2 number of extra gaps= 2 total=37577 # 1k3bA.219.64 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)P219 (1k3bA)N65 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1k3bA 66 :QGFEIVL Number of specific fragments extracted= 1 number of extra gaps= 2 total=37578 # 1wycA.219.344 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 Warning: unaligning (T0506)A227 (1wycA)D353 because D (zeta) conformation "forbidden" or filtered. T0506 219 :P 1wycA 345 :I T0506 221 :GI 1wycA 347 :GQ T0506 225 :AS 1wycA 351 :WL Number of specific fragments extracted= 3 number of extra gaps= 3 total=37581 # 1xodA.219.78 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)D223 (1xodA)H88 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L224 (1xodA)W89 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PDGI 1xodA 84 :PTFH T0506 225 :ASA 1xodA 90 :RIG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37583 # 1mswD.219.729 read from T0506.t04.many.frag # found chain 1mswD in template set Warning: unaligning (T0506)A225 (1mswD)W736 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1mswD)E738 because D (zeta) conformation "forbidden" or filtered. T0506 219 :PDGIDL 1mswD 730 :PDGFPV T0506 226 :S 1mswD 737 :Q Number of specific fragments extracted= 2 number of extra gaps= 2 total=37585 # 1qhtA.219.540 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 219 :PDGIDLASA 1qhtA 541 :TDGLHATIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37586 # 1ig0A.219.222 read from T0506.t04.many.frag # found chain 1ig0A in training set T0506 219 :PDGIDLASA 1ig0A 223 :PTDLIFLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37587 # 1wthD.219.191 read from T0506.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)P219 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1wthD)M193 Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 T0506 221 :GIDLASA 1wthD 194 :GVNMMDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=37588 # 1ylnA.219.164 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)D223 (1ylnA)R169 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1ylnA)P173 because P (beta_P) conformation "forbidden" or filtered. T0506 219 :PDGI 1ylnA 165 :RSGC T0506 224 :LAS 1ylnA 170 :FIT Number of specific fragments extracted= 2 number of extra gaps= 2 total=37590 # 1w1hA.219.105 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 219 :PDGIDLASA 1w1hA 511 :FKTFFVHTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=37591 # 1jm1A.219.116 read from T0506.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0506)D223 (1jm1A)D167 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PDGI 1jm1A 163 :AKGA T0506 224 :LASA 1jm1A 168 :LHCP Number of specific fragments extracted= 2 number of extra gaps= 1 total=37593 # 2d28C.219.102 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)P219 (2d28C)D103 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D220 (2d28C)G104 because T (delta_L) conformation "forbidden" or filtered. T0506 221 :GIDLASA 2d28C 105 :RLDLWIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37594 # 1yllA.219.147 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)P219 (1yllA)Q146 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1yllA 147 :DGVAISL Number of specific fragments extracted= 1 number of extra gaps= 2 total=37595 # 1wckA.219.194 read from T0506.t04.many.frag # found chain 1wckA in template set Warning: unaligning (T0506)P219 (1wckA)G195 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1wckA)A201 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1wckA)G203 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DGIDL 1wckA 196 :LGLSL T0506 226 :S 1wckA 202 :L Number of specific fragments extracted= 2 number of extra gaps= 3 total=37597 # 1nkiA.219.34 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)D223 (1nkiA)Y39 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PDGI 1nkiA 35 :DQGA T0506 224 :LASA 1nkiA 40 :LELG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37599 # 1u9iA.219.240 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)G221 (1u9iA)G243 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1u9iA)N245 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PD 1u9iA 241 :DH T0506 222 :I 1u9iA 244 :I T0506 224 :LASA 1u9iA 246 :IFPL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37602 # 2b5nA.219.118 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)D223 (2b5nA)V509 because D (zeta) conformation "forbidden" or filtered. T0506 219 :PDGI 2b5nA 505 :SSQV T0506 224 :LASA 2b5nA 510 :VAVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37604 # 1pbyB.219.288 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)A227 (1pbyB)G297 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 1pbyB 289 :TDGSTVWL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37605 # 1qftA.219.116 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)G221 (1qftA)C119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1qftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0506 219 :PD 1qftA 117 :DN T0506 222 :I 1qftA 120 :D T0506 224 :LASA 1qftA 122 :IYVP Number of specific fragments extracted= 3 number of extra gaps= 2 total=37608 # 1fo8A.219.314 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)P219 (1fo8A)R419 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1fo8A 420 :GIVTFLF Number of specific fragments extracted= 1 number of extra gaps= 2 total=37609 # 2f2hA.219.755 read from T0506.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0506)S226 (2f2hA)P763 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2f2hA)Q764 because D (zeta) conformation "forbidden" or filtered. T0506 219 :PDGIDLA 2f2hA 756 :EQGLVVK Number of specific fragments extracted= 1 number of extra gaps= 1 total=37610 # 1qmyA.219.127 read from T0506.t04.many.frag # found chain 1qmyA in template set Warning: unaligning (T0506)G221 (1qmyA)G158 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1qmyA)I162 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1qmyA)D164 because S (epsilon) conformation "forbidden" or filtered. T0506 219 :PD 1qmyA 156 :SN T0506 222 :IDL 1qmyA 159 :WYA T0506 226 :S 1qmyA 163 :D Number of specific fragments extracted= 3 number of extra gaps= 3 total=37613 # 1pbyB.219.143 read from T0506.t04.many.frag # found chain 1pbyB in training set Warning: unaligning (T0506)A227 (1pbyB)L152 because N (gamma') conformation "forbidden" or filtered. T0506 219 :PDGIDLAS 1pbyB 144 :RDGSKLYG Number of specific fragments extracted= 1 number of extra gaps= 1 total=37614 # 1crzA.219.356 read from T0506.t04.many.frag # found chain 1crzA in template set Warning: unaligning (T0506)D223 (1crzA)M367 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1crzA)Y370 because Y (epsilon') conformation "forbidden" or filtered. T0506 219 :PDGI 1crzA 363 :PNGT T0506 224 :LA 1crzA 368 :VI T0506 227 :A 1crzA 371 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=37617 # 1zjcA.219.390 read from T0506.t04.many.frag # found chain 1zjcA in template set Warning: unaligning (T0506)P219 (1zjcA)S388 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1zjcA)D390 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1zjcA)T392 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :D 1zjcA 389 :S T0506 222 :I 1zjcA 391 :L T0506 224 :LASA 1zjcA 393 :IYGI Number of specific fragments extracted= 3 number of extra gaps= 3 total=37620 # 1tl2A.219.143 read from T0506.t04.many.frag # found chain 1tl2A in template set T0506 219 :PDGIDLASA 1tl2A 144 :PNGYLYAVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37621 1f00I expands to /projects/compbio/data/pdb/1f00.pdb.gz 1f00I:# 1f00I.219.100 read from T0506.t04.many.frag # adding 1f00I to template set # found chain 1f00I in template set Warning: unaligning (T0506)D223 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. T0506 219 :PDGI 1f00I 758 :DGNI T0506 224 :LASA 1f00I 763 :IVGT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37623 # 1wkcA.219.71 read from T0506.t04.many.frag # found chain 1wkcA in training set T0506 219 :PDGIDLASA 1wkcA 72 :GKGLTVHPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37624 # 1vqoT.219.67 read from T0506.t04.many.frag # found chain 1vqoT in template set Warning: unaligning (T0506)I222 (1vqoT)A70 because L (left) conformation "forbidden" or filtered. T0506 219 :PDG 1vqoT 67 :LDK T0506 223 :DLASA 1vqoT 71 :VIHVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37626 # 1go3E.220.94 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)S226 (1go3E)L101 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :DGIDLA 1go3E 95 :FGSFVR T0506 228 :S 1go3E 103 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=37628 # 2f02A.220.228 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)I222 (2f02A)A229 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :DG 2f02A 227 :DG T0506 223 :DLASAS 2f02A 230 :IAKHHD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37630 # 1k3bA.220.65 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1k3bA 66 :QGFEIVL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37631 # 1xodA.220.79 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)G221 (1xodA)F86 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L224 (1xodA)W89 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :D 1xodA 85 :T T0506 222 :ID 1xodA 87 :HH T0506 225 :ASAS 1xodA 90 :RIGD Number of specific fragments extracted= 3 number of extra gaps= 2 total=37634 # 1ig0A.220.223 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L224 (1ig0A)F228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1ig0A)K231 because P (beta_P) conformation "forbidden" or filtered. T0506 220 :DGID 1ig0A 224 :TDLI T0506 225 :AS 1ig0A 229 :LI T0506 228 :S 1ig0A 232 :K Number of specific fragments extracted= 3 number of extra gaps= 2 total=37637 # 1fo8A.220.315 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)D220 (1fo8A)G420 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)G221 (1fo8A)I421 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1fo8A)G428 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLAS 1fo8A 422 :VTFLF Number of specific fragments extracted= 1 number of extra gaps= 2 total=37638 # 1wycA.220.345 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D220 (1wycA)H346 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 Warning: unaligning (T0506)A225 (1wycA)W351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1wycA)D353 because D (zeta) conformation "forbidden" or filtered. T0506 221 :GI 1wycA 347 :GQ T0506 226 :S 1wycA 352 :L T0506 228 :S 1wycA 354 :P Number of specific fragments extracted= 3 number of extra gaps= 3 total=37641 # 1w1hA.220.106 read from T0506.t04.many.frag # found chain 1w1hA in training set Warning: unaligning (T0506)G221 (1w1hA)T513 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1w1hA)N520 because G (3-10) conformation "forbidden" or filtered. T0506 220 :D 1w1hA 512 :K T0506 222 :IDLASA 1w1hA 514 :FFVHTP Number of specific fragments extracted= 2 number of extra gaps= 2 total=37643 # 1mswD.220.730 read from T0506.t04.many.frag # found chain 1mswD in template set Warning: unaligning (T0506)A227 (1mswD)E738 because D (zeta) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1mswD 731 :DGFPVWQ T0506 228 :S 1mswD 739 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=37645 # 1qhtA.220.541 read from T0506.t04.many.frag # found chain 1qhtA in template set T0506 220 :DGIDLASAS 1qhtA 542 :DGLHATIPG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37646 # 1wthD.220.192 read from T0506.t04.many.frag # found chain 1wthD in template set Warning: unaligning (T0506)D220 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1wthD)M193 T0506 221 :GIDLASAS 1wthD 194 :GVNMMDYD Number of specific fragments extracted= 1 number of extra gaps= 1 total=37647 # 1nkiA.220.35 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)I222 (1nkiA)A38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1nkiA)Y39 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DG 1nkiA 36 :QG T0506 224 :LAS 1nkiA 40 :LEL T0506 228 :S 1nkiA 44 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=37650 # 2b5nA.220.119 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)G221 (2b5nA)Q507 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :D 2b5nA 506 :S T0506 222 :IDLASAS 2b5nA 508 :VVVAVGR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37652 # 1hxn.220.126 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)G221 (1hxn)R343 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :D 1hxn 342 :S T0506 222 :IDLAS 1hxn 344 :LHIMA T0506 228 :S 1hxn 350 :R Number of specific fragments extracted= 3 number of extra gaps= 2 total=37655 # 2d28C.220.103 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)D220 (2d28C)G104 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (2d28C)W109 because P (beta_P) conformation "forbidden" or filtered. T0506 221 :GIDL 2d28C 105 :RLDL T0506 226 :SAS 2d28C 110 :IAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=37657 # 1qftA.220.117 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)S228 (1qftA)G126 because L (left) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 1qftA 118 :NCDVIYVP Number of specific fragments extracted= 1 number of extra gaps= 1 total=37658 # 1ylnA.220.165 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)D223 (1ylnA)R169 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1ylnA)I171 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1ylnA)P173 because P (beta_P) conformation "forbidden" or filtered. T0506 220 :DGI 1ylnA 166 :SGC T0506 224 :L 1ylnA 170 :F T0506 226 :S 1ylnA 172 :T T0506 228 :S 1ylnA 174 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=37662 # 1jm1A.220.117 read from T0506.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0506)I222 (1jm1A)A166 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1jm1A)C170 because P (beta_P) conformation "forbidden" or filtered. T0506 220 :DG 1jm1A 164 :KG T0506 223 :DLA 1jm1A 167 :DLH T0506 227 :AS 1jm1A 171 :PC Number of specific fragments extracted= 3 number of extra gaps= 2 total=37665 # 1f00I.220.101 read from T0506.t04.many.frag # found chain 1f00I in template set Warning: unaligning (T0506)G221 (1f00I)N760 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1f00I)E762 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1f00I)G767 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :D 1f00I 759 :G T0506 222 :I 1f00I 761 :I T0506 224 :LASA 1f00I 763 :IVGT Number of specific fragments extracted= 3 number of extra gaps= 3 total=37668 # 1h2wA.220.297 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)G221 (1h2wA)V299 because N (gamma') conformation "forbidden" or filtered. T0506 220 :D 1h2wA 298 :T T0506 222 :IDLASAS 1h2wA 300 :FTFKTNR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37670 # 1yllA.220.148 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1yllA)G155 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1yllA 147 :DGVAISL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37671 1pcxA expands to /projects/compbio/data/pdb/1pcx.pdb.gz 1pcxA:# 1pcxA.220.680 read from T0506.t04.many.frag # adding 1pcxA to template set # found chain 1pcxA in template set Warning: unaligning (T0506)S228 (1pcxA)G805 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGIDLASA 1pcxA 797 :YGLYLIDN Number of specific fragments extracted= 1 number of extra gaps= 1 total=37672 1hi9A expands to /projects/compbio/data/pdb/1hi9.pdb.gz 1hi9A:# 1hi9A.220.235 read from T0506.t04.many.frag # adding 1hi9A to template set # found chain 1hi9A in template set Warning: unaligning (T0506)A227 (1hi9A)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1hi9A 236 :PGTEIKT T0506 228 :S 1hi9A 244 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=37674 # 1v04A.220.338 read from T0506.t04.many.frag # found chain 1v04A in template set Warning: unaligning (T0506)G221 (1v04A)K340 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :D 1v04A 339 :G T0506 222 :IDLASAS 1v04A 341 :LLIGTVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=37676 # 2f2hA.220.756 read from T0506.t04.many.frag # found chain 2f2hA in template set Warning: unaligning (T0506)A225 (2f2hA)K762 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2f2hA)Q764 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2f2hA)G765 because T (delta_L) conformation "forbidden" or filtered. T0506 220 :DGIDL 2f2hA 757 :QGLVV T0506 226 :S 2f2hA 763 :P Number of specific fragments extracted= 2 number of extra gaps= 2 total=37678 # 1ntyA.220.269 read from T0506.t04.many.frag # found chain 1ntyA in training set Warning: unaligning (T0506)G221 (1ntyA)K1495 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1ntyA)W1499 because Y (epsilon') conformation "forbidden" or filtered. T0506 220 :D 1ntyA 1494 :C T0506 222 :IDL 1ntyA 1496 :FAL T0506 226 :SAS 1ntyA 1500 :VGR Number of specific fragments extracted= 3 number of extra gaps= 2 total=37681 # 1wckA.220.195 read from T0506.t04.many.frag # found chain 1wckA in template set Warning: unaligning (T0506)A227 (1wckA)G203 because S (epsilon) conformation "forbidden" or filtered. T0506 220 :DGIDLAS 1wckA 196 :LGLSLAL T0506 228 :S 1wckA 204 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=37683 # 1wv3A.220.159 read from T0506.t04.many.frag # found chain 1wv3A in template set Warning: unaligning (T0506)D220 (1wv3A)E160 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1wv3A)W163 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GI 1wv3A 161 :GI T0506 224 :LASAS 1wv3A 164 :LEVQA Number of specific fragments extracted= 2 number of extra gaps= 2 total=37685 # 1jo0A.220.79 read from T0506.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0506)G221 (1jo0A)I82 because E (beta_S) conformation "forbidden" or filtered. T0506 220 :D 1jo0A 81 :H T0506 222 :IDLASAS 1jo0A 83 :LVLYRPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37687 # 1u9iA.220.241 read from T0506.t04.many.frag # found chain 1u9iA in template set Warning: unaligning (T0506)G221 (1u9iA)G243 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1u9iA)N245 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1u9iA)F247 because D (zeta) conformation "forbidden" or filtered. T0506 220 :D 1u9iA 242 :H T0506 222 :I 1u9iA 244 :I T0506 224 :L 1u9iA 246 :I T0506 226 :SAS 1u9iA 248 :PLG Number of specific fragments extracted= 4 number of extra gaps= 3 total=37691 # 1go3E.221.95 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)G221 (1go3E)G96 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLAS 1go3E 97 :SFVRL T0506 228 :SD 1go3E 103 :PL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37693 # 2f02A.221.229 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :GIDLAS 2f02A 228 :GAIAKH T0506 228 :SD 2f02A 235 :DQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37695 # 1xodA.221.80 read from T0506.t04.many.frag # found chain 1xodA in training set T0506 221 :GIDLASASD 1xodA 86 :FHHWRIGDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37696 # 1k3bA.221.66 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1k3bA 67 :GFEIVL T0506 229 :D 1k3bA 75 :Y Number of specific fragments extracted= 2 number of extra gaps= 1 total=37698 # 1ig0A.221.224 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L224 (1ig0A)F228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1ig0A)L229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1ig0A)K231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ig0A)N233 because L (left) conformation "forbidden" or filtered. T0506 221 :GID 1ig0A 225 :DLI T0506 226 :S 1ig0A 230 :I T0506 228 :S 1ig0A 232 :K Number of specific fragments extracted= 3 number of extra gaps= 3 total=37701 # 1fo8A.221.316 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)G221 (1fo8A)I421 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1fo8A)L425 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1fo8A)G428 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDL 1fo8A 422 :VTF T0506 226 :S 1fo8A 426 :F T0506 229 :D 1fo8A 429 :R Number of specific fragments extracted= 3 number of extra gaps= 3 total=37704 # 1nkiA.221.36 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)I222 (1nkiA)A38 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1nkiA)E41 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 221 :G 1nkiA 37 :G T0506 223 :DL 1nkiA 39 :YL T0506 226 :S 1nkiA 42 :L T0506 228 :SD 1nkiA 44 :SL Number of specific fragments extracted= 4 number of extra gaps= 3 total=37708 # 1hxn.221.127 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)G221 (1hxn)R343 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1hxn)R351 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :IDLASAS 1hxn 344 :LHIMAGR Number of specific fragments extracted= 1 number of extra gaps= 2 total=37709 # 1w1hA.221.107 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 221 :GIDLASASD 1w1hA 513 :TFFVHTPNR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37710 # 1wycA.221.346 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 T0506 221 :GI 1wycA 347 :GQ T0506 225 :ASASD 1wycA 351 :WLDPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37712 # 1hi9A.221.236 read from T0506.t04.many.frag # found chain 1hi9A in template set Warning: unaligning (T0506)A227 (1hi9A)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1hi9A 237 :GTEIKT T0506 228 :SD 1hi9A 244 :TT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37714 # 1qhtA.221.542 read from T0506.t04.many.frag # found chain 1qhtA in template set Warning: unaligning (T0506)D223 (1qhtA)H545 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1qhtA)G550 because T (delta_L) conformation "forbidden" or filtered. T0506 221 :GI 1qhtA 543 :GL T0506 224 :LASA 1qhtA 546 :ATIP T0506 229 :D 1qhtA 551 :A Number of specific fragments extracted= 3 number of extra gaps= 2 total=37717 # 2b5nA.221.120 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)A227 (2b5nA)G513 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2b5nA)R514 because G (3-10) conformation "forbidden" or filtered. T0506 221 :GIDLAS 2b5nA 507 :QVVVAV T0506 229 :D 2b5nA 515 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=37719 # 1wv3A.221.160 read from T0506.t04.many.frag # found chain 1wv3A in template set Warning: unaligning (T0506)D223 (1wv3A)W163 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1wv3A)Q167 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GI 1wv3A 161 :GI T0506 224 :LAS 1wv3A 164 :LEV T0506 228 :SD 1wv3A 168 :AD Number of specific fragments extracted= 3 number of extra gaps= 2 total=37722 # 1qftA.221.118 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)G221 (1qftA)C119 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1qftA)V121 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :I 1qftA 120 :D T0506 224 :LASASD 1qftA 122 :IYVPGT Number of specific fragments extracted= 2 number of extra gaps= 2 total=37724 # 1kq1A.221.42 read from T0506.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0506)S228 (1kq1A)G50 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1kq1A)K51 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GIDLASA 1kq1A 43 :VVSLNSQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=37725 # 1jm1A.221.118 read from T0506.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0506)G221 (1jm1A)G165 because G (3-10) conformation "forbidden" or filtered. T0506 222 :IDLASASD 1jm1A 166 :ADLHCPCH Number of specific fragments extracted= 1 number of extra gaps= 1 total=37726 # 1mswD.221.731 read from T0506.t04.many.frag # found chain 1mswD in template set Warning: unaligning (T0506)A227 (1mswD)E738 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1mswD)K740 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1mswD 732 :GFPVWQ T0506 228 :S 1mswD 739 :Y Number of specific fragments extracted= 2 number of extra gaps= 2 total=37728 # 1yllA.221.149 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. T0506 221 :GIDLAS 1yllA 148 :GVAISL T0506 228 :SD 1yllA 155 :GQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37730 # 1v04A.221.339 read from T0506.t04.many.frag # found chain 1v04A in template set T0506 221 :GIDLASASD 1v04A 340 :KLLIGTVFH Number of specific fragments extracted= 1 number of extra gaps= 0 total=37731 # 2d28C.221.104 read from T0506.t04.many.frag # found chain 2d28C in template set Warning: unaligning (T0506)G221 (2d28C)R105 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :IDLASASD 2d28C 106 :LDLWIADP Number of specific fragments extracted= 1 number of extra gaps= 1 total=37732 # 1jo0A.221.80 read from T0506.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0506)A225 (1jo0A)Y86 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :GIDL 1jo0A 82 :ILVL T0506 226 :SASD 1jo0A 87 :RPSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37734 # 1jiwI.221.66 read from T0506.t04.many.frag # found chain 1jiwI in training set Warning: unaligning (T0506)D223 (1jiwI)A69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1jiwI)G75 because T (delta_L) conformation "forbidden" or filtered. T0506 221 :GI 1jiwI 67 :GI T0506 224 :LASAS 1jiwI 70 :LLERG Number of specific fragments extracted= 2 number of extra gaps= 2 total=37736 1vk4A expands to /projects/compbio/data/pdb/1vk4.pdb.gz 1vk4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 246, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 248, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 250, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 252, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 256, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 260, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 1vk4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1392, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1394, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1396, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1402, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1404, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1406, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1408, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1507, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1509, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1511, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1513, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1515, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1517, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1765, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1767, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1977, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1979, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1981, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1983, because occupancy 0.350 <= existing 0.650 in 1vk4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2198, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2200, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2202, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2204, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2206, because occupancy 0.350 <= existing 0.650 in 1vk4A # 1vk4A.221.219 read from T0506.t04.many.frag # adding 1vk4A to template set # found chain 1vk4A in template set T0506 221 :GIDLASASD 1vk4A 208 :GVIVFDGNF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37737 # 1dmlA.221.208 read from T0506.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)G221 (1dmlA)K209 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1dmlA)T217 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :IDL 1dmlA 210 :FSV T0506 227 :AS 1dmlA 215 :TS Number of specific fragments extracted= 2 number of extra gaps= 3 total=37739 # 1c4qA.221.18 read from T0506.t04.many.frag # found chain 1c4qA in training set Warning: unaligning (T0506)G221 (1c4qA)T119 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1c4qA)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1c4qA)D126 because G (3-10) conformation "forbidden" or filtered. T0506 222 :IDLAS 1c4qA 120 :FTVKV T0506 229 :D 1c4qA 127 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=37741 # 1tl2A.221.146 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)G221 (1tl2A)Y147 because P (beta_P) conformation "forbidden" or filtered. T0506 222 :IDLASASD 1tl2A 148 :LYAVHGQQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=37742 # 1ylnA.221.166 read from T0506.t04.many.frag # found chain 1ylnA in template set Warning: unaligning (T0506)I222 (1ylnA)C168 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1ylnA)R169 because E (beta_S) conformation "forbidden" or filtered. T0506 221 :G 1ylnA 167 :G T0506 224 :LASASD 1ylnA 170 :FITPPL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37744 # 1ntyA.221.270 read from T0506.t04.many.frag # found chain 1ntyA in training set Warning: unaligning (T0506)G221 (1ntyA)K1495 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (1ntyA)W1499 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1ntyA)G1501 because S (epsilon) conformation "forbidden" or filtered. T0506 222 :IDL 1ntyA 1496 :FAL T0506 226 :S 1ntyA 1500 :V T0506 228 :SD 1ntyA 1502 :RT Number of specific fragments extracted= 3 number of extra gaps= 3 total=37747 # 1h2wA.221.298 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)G221 (1h2wA)V299 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1h2wA)H307 because L (left) conformation "forbidden" or filtered. T0506 222 :IDLASAS 1h2wA 300 :FTFKTNR Number of specific fragments extracted= 1 number of extra gaps= 2 total=37748 # 1go3E.222.96 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLAS 1go3E 97 :SFVRL T0506 228 :SDL 1go3E 103 :PLD Number of specific fragments extracted= 2 number of extra gaps= 1 total=37750 # 2f02A.222.230 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)I222 (2f02A)A229 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A225 (2f02A)K232 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DL 2f02A 230 :IA T0506 226 :S 2f02A 233 :H T0506 228 :SDL 2f02A 235 :DQF Number of specific fragments extracted= 3 number of extra gaps= 3 total=37753 # 1xodA.222.81 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)S228 (1xodA)D93 because G (3-10) conformation "forbidden" or filtered. T0506 222 :IDLASA 1xodA 87 :HHWRIG T0506 229 :DL 1xodA 94 :KK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37755 # 1ig0A.222.225 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L224 (1ig0A)F228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ig0A)N233 because L (left) conformation "forbidden" or filtered. T0506 222 :ID 1ig0A 226 :LI T0506 225 :ASAS 1ig0A 229 :LIKK T0506 230 :L 1ig0A 234 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=37758 # 1fo8A.222.317 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1fo8A)G428 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1fo8A)R429 because P (beta_P) conformation "forbidden" or filtered. T0506 222 :IDLAS 1fo8A 422 :VTFLF T0506 230 :L 1fo8A 430 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=37760 # 1k3bA.222.67 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)I222 (1k3bA)F68 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D223 (1k3bA)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1k3bA)Y75 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LAS 1k3bA 70 :IVL T0506 230 :L 1k3bA 76 :K Number of specific fragments extracted= 2 number of extra gaps= 2 total=37762 # 1hxn.222.128 read from T0506.t04.many.frag # found chain 1hxn in training set T0506 222 :IDLASASDL 1hxn 344 :LHIMAGRRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37763 # 1nkiA.222.37 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)D223 (1nkiA)Y39 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :I 1nkiA 38 :A T0506 224 :LASASDL 1nkiA 40 :LELGSLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=37765 # 1wv3A.222.161 read from T0506.t04.many.frag # found chain 1wv3A in template set Warning: unaligning (T0506)S226 (1wv3A)V166 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1wv3A)G170 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLA 1wv3A 162 :IWLE T0506 227 :ASD 1wv3A 167 :QAD Number of specific fragments extracted= 2 number of extra gaps= 2 total=37767 # 1w1hA.222.108 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 222 :IDLASASDL 1w1hA 514 :FFVHTPNRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37768 # 2b5nA.222.121 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)A227 (2b5nA)G513 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLAS 2b5nA 508 :VVVAV T0506 228 :SDL 2b5nA 514 :RAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37770 # 1hi9A.222.237 read from T0506.t04.many.frag # found chain 1hi9A in template set T0506 222 :IDLASASDL 1hi9A 238 :TEIKTGTTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37771 # 1wycA.222.347 read from T0506.t04.many.frag # found chain 1wycA in template set Warning: unaligning (T0506)D223 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wycA)L350 Warning: unaligning (T0506)L224 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wycA)L350 Warning: unaligning (T0506)A227 (1wycA)D353 because D (zeta) conformation "forbidden" or filtered. T0506 222 :I 1wycA 348 :Q T0506 225 :AS 1wycA 351 :WL T0506 228 :SDL 1wycA 354 :PLT Number of specific fragments extracted= 3 number of extra gaps= 2 total=37774 # 1qftA.222.119 read from T0506.t04.many.frag # found chain 1qftA in training set T0506 222 :IDLASASDL 1qftA 120 :DVIYVPGTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=37775 # 1c4qA.222.19 read from T0506.t04.many.frag # found chain 1c4qA in training set Warning: unaligning (T0506)A227 (1c4qA)G125 because S (epsilon) conformation "forbidden" or filtered. T0506 222 :IDLAS 1c4qA 120 :FTVKV T0506 228 :SDL 1c4qA 126 :DKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37777 # 1jm1A.222.119 read from T0506.t04.many.frag # found chain 1jm1A in training set T0506 222 :IDLASASDL 1jm1A 166 :ADLHCPCHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37778 # 1tl2A.222.147 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)D229 (1tl2A)Q155 because P (beta_P) conformation "forbidden" or filtered. T0506 222 :IDLASAS 1tl2A 148 :LYAVHGQ T0506 230 :L 1tl2A 156 :F Number of specific fragments extracted= 2 number of extra gaps= 1 total=37780 # 1yt5A.222.223 read from T0506.t04.many.frag # found chain 1yt5A in template set Warning: unaligning (T0506)A225 (1yt5A)K227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDL 1yt5A 224 :IEV T0506 226 :SASD 1yt5A 228 :KSRR Number of specific fragments extracted= 2 number of extra gaps= 2 total=37782 1mkfA expands to /projects/compbio/data/pdb/1mkf.pdb.gz 1mkfA:# 1mkfA.222.364 read from T0506.t04.many.frag # adding 1mkfA to template set # found chain 1mkfA in template set Warning: unaligning (T0506)S226 (1mkfA)L369 because Y (epsilon') conformation "forbidden" or filtered. T0506 222 :IDLA 1mkfA 365 :VSLM T0506 227 :ASDL 1mkfA 370 :EGQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37784 # 1ze3C.222.130 read from T0506.t04.many.frag # found chain 1ze3C in template set T0506 222 :IDLASASDL 1ze3C 131 :LRFRRSANS Number of specific fragments extracted= 1 number of extra gaps= 0 total=37785 # 1jo0A.222.81 read from T0506.t04.many.frag # found chain 1jo0A in training set T0506 222 :IDLASASDL 1jo0A 83 :LVLYRPSEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=37786 # 1v04A.222.340 read from T0506.t04.many.frag # found chain 1v04A in template set T0506 222 :IDLASASDL 1v04A 341 :LLIGTVFHK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37787 # 1dmlA.222.209 read from T0506.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)D223 (1dmlA)S211 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :I 1dmlA 210 :F T0506 224 :LASASDL 1dmlA 212 :VFTTSTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=37789 # 1xipA.222.174 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)A225 (1xipA)L177 because E (beta_S) conformation "forbidden" or filtered. T0506 222 :IDL 1xipA 174 :LAV T0506 226 :SASDL 1xipA 178 :LKDRS Number of specific fragments extracted= 2 number of extra gaps= 1 total=37791 # 1yllA.222.150 read from T0506.t04.many.frag # found chain 1yllA in training set Warning: unaligning (T0506)D223 (1yllA)A150 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1yllA)Q154 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1yllA)G155 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :I 1yllA 149 :V T0506 224 :LAS 1yllA 151 :ISL T0506 229 :DL 1yllA 156 :QP Number of specific fragments extracted= 3 number of extra gaps= 2 total=37794 # 1ts9A.222.62 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)D223 (1ts9A)R64 because P (beta_P) conformation "forbidden" or filtered. T0506 222 :I 1ts9A 63 :F T0506 224 :LASASDL 1ts9A 65 :VWYKGKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37796 # 1nh0A.222.10 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)D223 (1nh0A)T12 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 T0506 222 :I 1nh0A 11 :V T0506 224 :LAS 1nh0A 13 :IKI T0506 229 :DL 1nh0A 18 :QL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37799 # 1rwhA.222.655 read from T0506.t04.many.frag # found chain 1rwhA in training set Warning: unaligning (T0506)L230 (1rwhA)K664 because L (left) conformation "forbidden" or filtered. T0506 222 :IDLASASD 1rwhA 656 :QSVEFKTA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37800 # 1kq1A.222.43 read from T0506.t04.many.frag # found chain 1kq1A in training set Warning: unaligning (T0506)A227 (1kq1A)Q49 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1kq1A)G50 because T (delta_L) conformation "forbidden" or filtered. T0506 222 :IDLAS 1kq1A 44 :VSLNS T0506 229 :DL 1kq1A 51 :KQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37802 # 1yqhA.222.38 read from T0506.t04.many.frag # found chain 1yqhA in training set T0506 222 :IDLASASDL 1yqhA 36 :VRYEVGAME Number of specific fragments extracted= 1 number of extra gaps= 0 total=37803 # 1xodA.223.82 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)D223 (1xodA)H88 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LASASDLA 1xodA 89 :WRIGDKKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=37804 # 1go3E.223.97 read from T0506.t04.many.frag # found chain 1go3E in training set T0506 223 :DLASASDLA 1go3E 98 :FVRLGPLDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=37805 # 2f02A.223.231 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DLAS 2f02A 230 :IAKH T0506 228 :SDLA 2f02A 235 :DQFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37807 # 1ig0A.223.226 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L224 (1ig0A)F228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ig0A)N233 because L (left) conformation "forbidden" or filtered. T0506 223 :D 1ig0A 227 :I T0506 225 :ASAS 1ig0A 229 :LIKK T0506 230 :LA 1ig0A 234 :GT Number of specific fragments extracted= 3 number of extra gaps= 2 total=37810 # 1fo8A.223.318 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)L224 (1fo8A)F424 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1fo8A)G428 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :D 1fo8A 423 :T T0506 225 :AS 1fo8A 425 :LF T0506 229 :DLA 1fo8A 429 :RRV Number of specific fragments extracted= 3 number of extra gaps= 2 total=37813 # 1hxn.223.129 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DLAS 1hxn 345 :HIMA T0506 228 :SDLA 1hxn 350 :RRLW Number of specific fragments extracted= 2 number of extra gaps= 1 total=37815 # 1nkiA.223.38 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)S226 (1nkiA)L42 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. T0506 223 :DLA 1nkiA 39 :YLE T0506 228 :SDLA 1nkiA 44 :SLWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37817 # 1k3bA.223.68 read from T0506.t04.many.frag # found chain 1k3bA in template set Warning: unaligning (T0506)D223 (1k3bA)E69 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1k3bA)N73 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1k3bA)D74 because L (left) conformation "forbidden" or filtered. T0506 224 :LAS 1k3bA 70 :IVL T0506 229 :DLA 1k3bA 75 :YKW Number of specific fragments extracted= 2 number of extra gaps= 2 total=37819 # 1yt5A.223.224 read from T0506.t04.many.frag # found chain 1yt5A in template set Warning: unaligning (T0506)A225 (1yt5A)K227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DL 1yt5A 225 :EV T0506 226 :SASD 1yt5A 228 :KSRR T0506 231 :A 1yt5A 233 :V Number of specific fragments extracted= 3 number of extra gaps= 2 total=37822 # 1mkfA.223.365 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)S226 (1mkfA)L369 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1mkfA)Q372 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1mkfA)Y374 because E (beta_S) conformation "forbidden" or filtered. T0506 223 :DLA 1mkfA 366 :SLM T0506 227 :AS 1mkfA 370 :EG T0506 230 :L 1mkfA 373 :Q Number of specific fragments extracted= 3 number of extra gaps= 3 total=37825 # 1wv3A.223.162 read from T0506.t04.many.frag # found chain 1wv3A in template set Warning: unaligning (T0506)L230 (1wv3A)G170 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLASASD 1wv3A 163 :WLEVQAD T0506 231 :A 1wv3A 171 :L Number of specific fragments extracted= 2 number of extra gaps= 1 total=37827 # 1hi9A.223.238 read from T0506.t04.many.frag # found chain 1hi9A in template set Warning: unaligning (T0506)A227 (1hi9A)G243 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1hi9A)T244 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLAS 1hi9A 239 :EIKT T0506 229 :DLA 1hi9A 245 :TTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37829 # 1w1hA.223.109 read from T0506.t04.many.frag # found chain 1w1hA in training set T0506 223 :DLASASDLA 1w1hA 515 :FVHTPNRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=37830 # 1c4qA.223.20 read from T0506.t04.many.frag # found chain 1c4qA in training set Warning: unaligning (T0506)A227 (1c4qA)G125 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1c4qA)D126 because G (3-10) conformation "forbidden" or filtered. T0506 223 :DLAS 1c4qA 121 :TVKV T0506 229 :DLA 1c4qA 127 :KEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37832 # 2b5nA.223.122 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)S226 (2b5nA)V512 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2b5nA)G513 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :DLA 2b5nA 509 :VVA T0506 228 :SDLA 2b5nA 514 :RALY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37834 # 1ts9A.223.63 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)S228 (1ts9A)G69 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :DLASA 1ts9A 64 :RVWYK T0506 229 :DLA 1ts9A 70 :KIM Number of specific fragments extracted= 2 number of extra gaps= 1 total=37836 # 1nh0A.223.11 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 T0506 223 :DLAS 1nh0A 12 :TIKI T0506 229 :DLA 1nh0A 18 :QLK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37838 # 1ze3C.223.131 read from T0506.t04.many.frag # found chain 1ze3C in template set Warning: unaligning (T0506)D223 (1ze3C)R132 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LASASDLA 1ze3C 133 :FRRSANSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=37839 # 3nul.223.91 read from T0506.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0506)S226 (3nul)K96 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (3nul)A100 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLA 3nul 93 :TIK T0506 227 :ASD 3nul 97 :TNQ T0506 231 :A 3nul 101 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=37842 1o22A expands to /projects/compbio/data/pdb/1o22.pdb.gz 1o22A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 299, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 301, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 303, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 305, because occupancy 0.350 <= existing 0.650 in 1o22A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 825, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 827, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 833, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 835, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 837, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 839, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 957, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 959, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 1011, because occupancy 0.500 <= existing 0.500 in 1o22A Skipped atom 1013, because occupancy 0.500 <= existing 0.500 in 1o22A Skipped atom 1015, because occupancy 0.500 <= existing 0.500 in 1o22A Skipped atom 1028, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 1030, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 1032, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 1034, because occupancy 0.350 <= existing 0.650 in 1o22A Skipped atom 1036, because occupancy 0.350 <= existing 0.650 in 1o22A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1o22A.223.114 read from T0506.t04.many.frag # adding 1o22A to template set # found chain 1o22A in template set Warning: unaligning (T0506)A227 (1o22A)E107 because D (zeta) conformation "forbidden" or filtered. T0506 223 :DLAS 1o22A 103 :KILS T0506 228 :SDLA 1o22A 108 :KNWY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37844 # 1g6sA.223.357 read from T0506.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 223 :DLASASD 1g6sA 358 :EVEEGHD T0506 231 :A 1g6sA 366 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=37846 # 1tl2A.223.148 read from T0506.t04.many.frag # found chain 1tl2A in template set Warning: unaligning (T0506)D223 (1tl2A)Y149 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1tl2A)G153 because S (epsilon) conformation "forbidden" or filtered. T0506 224 :LAS 1tl2A 150 :AVH T0506 228 :SDLA 1tl2A 154 :QQFY Number of specific fragments extracted= 2 number of extra gaps= 2 total=37848 # 1dmlA.223.210 read from T0506.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)A225 (1dmlA)F213 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1dmlA)V219 because E (beta_S) conformation "forbidden" or filtered. T0506 223 :DL 1dmlA 211 :SV T0506 227 :ASDL 1dmlA 215 :TSTC Number of specific fragments extracted= 2 number of extra gaps= 2 total=37850 # 1xipA.223.175 read from T0506.t04.many.frag # found chain 1xipA in template set Warning: unaligning (T0506)D229 (1xipA)R181 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :DLASAS 1xipA 175 :AVLLKD T0506 230 :LA 1xipA 182 :SF Number of specific fragments extracted= 2 number of extra gaps= 1 total=37852 # 1yqhA.223.39 read from T0506.t04.many.frag # found chain 1yqhA in training set T0506 223 :DLASASDLA 1yqhA 37 :RYEVGAMET Number of specific fragments extracted= 1 number of extra gaps= 0 total=37853 # 1qftA.223.120 read from T0506.t04.many.frag # found chain 1qftA in training set Warning: unaligning (T0506)A225 (1qftA)Y123 because E (beta_S) conformation "forbidden" or filtered. T0506 223 :DL 1qftA 121 :VI T0506 226 :SASDLA 1qftA 124 :VPGTDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=37855 # 1jm1A.223.120 read from T0506.t04.many.frag # found chain 1jm1A in training set Warning: unaligning (T0506)S226 (1jm1A)C170 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1jm1A)G174 because T (delta_L) conformation "forbidden" or filtered. T0506 223 :DLA 1jm1A 167 :DLH T0506 227 :ASD 1jm1A 171 :PCH T0506 231 :A 1jm1A 175 :S Number of specific fragments extracted= 3 number of extra gaps= 2 total=37858 # 2bf5A.223.81 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)D223 (2bf5A)Q86 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L224 because of BadResidue code BAD_PEPTIDE in next template residue (2bf5A)Q88 Warning: unaligning (T0506)A225 because of BadResidue code BAD_PEPTIDE at template residue (2bf5A)Q88 Warning: unaligning (T0506)A227 (2bf5A)D90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (2bf5A)I94 because E (beta_S) conformation "forbidden" or filtered. T0506 226 :S 2bf5A 89 :A T0506 228 :SD 2bf5A 91 :ED Number of specific fragments extracted= 2 number of extra gaps= 3 total=37860 # 1jo0A.223.82 read from T0506.t04.many.frag # found chain 1jo0A in training set Warning: unaligning (T0506)L230 (1jo0A)E91 because D (zeta) conformation "forbidden" or filtered. T0506 223 :DLASASD 1jo0A 84 :VLYRPSE T0506 231 :A 1jo0A 92 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=37862 # 1v04A.223.341 read from T0506.t04.many.frag # found chain 1v04A in template set T0506 223 :DLASASDLA 1v04A 342 :LIGTVFHKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=37863 # 1xodA.224.83 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)L224 (1xodA)W89 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :ASASDLA 1xodA 90 :RIGDKKF Number of specific fragments extracted= 1 number of extra gaps= 2 total=37864 # 1go3E.224.98 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LAS 1go3E 99 :VRL T0506 228 :SDLAR 1go3E 103 :PLDGL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37866 # 1fo8A.224.319 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)L224 (1fo8A)F424 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. T0506 225 :AS 1fo8A 425 :LF T0506 228 :SDLAR 1fo8A 428 :GRRVH Number of specific fragments extracted= 2 number of extra gaps= 2 total=37868 # 2f02A.224.232 read from T0506.t04.many.frag # found chain 2f02A in template set T0506 224 :LASASDLAR 2f02A 231 :AKHHDQFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37869 # 1ig0A.224.227 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L224 (1ig0A)F228 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1ig0A)K231 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. T0506 225 :AS 1ig0A 229 :LI T0506 228 :SD 1ig0A 232 :KN T0506 231 :AR 1ig0A 235 :TL Number of specific fragments extracted= 3 number of extra gaps= 3 total=37872 # 1hxn.224.130 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1hxn)R351 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LAS 1hxn 346 :IMA T0506 228 :S 1hxn 350 :R T0506 230 :LAR 1hxn 352 :LWW Number of specific fragments extracted= 3 number of extra gaps= 2 total=37875 # 1nkiA.224.39 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A227 (1nkiA)G43 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1nkiA)L47 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LAS 1nkiA 40 :LEL T0506 228 :SDL 1nkiA 44 :SLW T0506 232 :R 1nkiA 48 :C Number of specific fragments extracted= 3 number of extra gaps= 2 total=37878 # 1mkfA.224.366 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)R232 (1mkfA)R375 because N (gamma') conformation "forbidden" or filtered. T0506 224 :LASASDLA 1mkfA 367 :LMLEGQQY Number of specific fragments extracted= 1 number of extra gaps= 1 total=37879 # 1yt5A.224.225 read from T0506.t04.many.frag # found chain 1yt5A in template set Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASASD 1yt5A 226 :VKKSRR T0506 231 :AR 1yt5A 233 :VR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37881 # 1nh0A.224.12 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 T0506 224 :LAS 1nh0A 13 :IKI T0506 229 :DLAR 1nh0A 18 :QLKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37883 # 1ts9A.224.64 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)A227 (1ts9A)K68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1ts9A)G69 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ts9A)K70 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LAS 1ts9A 65 :VWY T0506 230 :LAR 1ts9A 71 :IMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37885 # 1hi9A.224.239 read from T0506.t04.many.frag # found chain 1hi9A in template set Warning: unaligning (T0506)S228 (1hi9A)T244 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASA 1hi9A 240 :IKTG T0506 229 :DLAR 1hi9A 245 :TTVQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=37887 # 1k3bA.224.69 read from T0506.t04.many.frag # found chain 1k3bA in template set T0506 224 :LASASDLAR 1k3bA 70 :IVLNDYKWF Number of specific fragments extracted= 1 number of extra gaps= 0 total=37888 # 1wv3A.224.163 read from T0506.t04.many.frag # found chain 1wv3A in template set T0506 224 :LASASDLAR 1wv3A 164 :LEVQADGLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=37889 # 1g6sA.224.358 read from T0506.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASASD 1g6sA 359 :VEEGHD T0506 231 :AR 1g6sA 366 :IR Number of specific fragments extracted= 2 number of extra gaps= 1 total=37891 # 1c4qA.224.21 read from T0506.t04.many.frag # found chain 1c4qA in training set Warning: unaligning (T0506)A225 (1c4qA)K123 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :L 1c4qA 122 :V T0506 226 :SASDLAR 1c4qA 124 :VGDKELA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37893 # 2b5nA.224.123 read from T0506.t04.many.frag # found chain 2b5nA in template set Warning: unaligning (T0506)D229 (2b5nA)A515 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LASAS 2b5nA 510 :VAVGR T0506 230 :LAR 2b5nA 516 :LYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37895 # 2bf5A.224.82 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)L224 because of BadResidue code BAD_PEPTIDE in next template residue (2bf5A)Q88 Warning: unaligning (T0506)A225 because of BadResidue code BAD_PEPTIDE at template residue (2bf5A)Q88 Warning: unaligning (T0506)A227 (2bf5A)D90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 2bf5A 89 :A T0506 228 :SD 2bf5A 91 :ED T0506 231 :AR 2bf5A 94 :IR Number of specific fragments extracted= 3 number of extra gaps= 3 total=37898 # 1o22A.224.115 read from T0506.t04.many.frag # found chain 1o22A in template set Warning: unaligning (T0506)A227 (1o22A)E107 because D (zeta) conformation "forbidden" or filtered. T0506 224 :LAS 1o22A 104 :ILS T0506 228 :SDLAR 1o22A 108 :KNWYK Number of specific fragments extracted= 2 number of extra gaps= 1 total=37900 # 1ze3D.224.103 read from T0506.t04.many.frag # found chain 1ze3D in template set Warning: unaligning (T0506)A225 (1ze3D)D105 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ze3D)Q109 because L (left) conformation "forbidden" or filtered. T0506 224 :L 1ze3D 104 :L T0506 226 :SAS 1ze3D 106 :VGQ T0506 230 :LAR 1ze3D 110 :RLN Number of specific fragments extracted= 3 number of extra gaps= 2 total=37903 # 1w1hA.224.110 read from T0506.t04.many.frag # found chain 1w1hA in training set Warning: unaligning (T0506)D229 (1w1hA)R521 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LASAS 1w1hA 516 :VHTPN T0506 230 :LAR 1w1hA 522 :TYY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37905 # 1ze3C.224.132 read from T0506.t04.many.frag # found chain 1ze3C in template set Warning: unaligning (T0506)A231 (1ze3C)L140 because E (beta_S) conformation "forbidden" or filtered. T0506 224 :LASASDL 1ze3C 133 :FRRSANS T0506 232 :R 1ze3C 141 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=37907 # 3nul.224.92 read from T0506.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0506)L230 (3nul)A100 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASASD 3nul 94 :IKKTNQ T0506 231 :AR 3nul 101 :LV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37909 # 1mixA.224.164 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)L224 (1mixA)W359 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1mixA)S362 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1mixA)S365 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :AS 1mixA 360 :AA T0506 228 :SD 1mixA 363 :PK T0506 231 :AR 1mixA 366 :FT Number of specific fragments extracted= 3 number of extra gaps= 3 total=37912 # 1zdyA.224.164 read from T0506.t04.many.frag # found chain 1zdyA in template set Warning: unaligning (T0506)D229 (1zdyA)R170 because L (left) conformation "forbidden" or filtered. T0506 224 :LASAS 1zdyA 165 :MDYKK T0506 230 :LAR 1zdyA 171 :QVN Number of specific fragments extracted= 2 number of extra gaps= 1 total=37914 # 1zx5A.224.121 read from T0506.t04.many.frag # found chain 1zx5A in template set Warning: unaligning (T0506)D229 (1zx5A)G126 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LASAS 1zx5A 121 :LVFNK T0506 230 :LAR 1zx5A 127 :KAY Number of specific fragments extracted= 2 number of extra gaps= 1 total=37916 # 1qb5D.224.39 read from T0506.t04.many.frag # found chain 1qb5D in template set T0506 224 :LASASDLAR 1qb5D 40 :VSSTGGVWR Number of specific fragments extracted= 1 number of extra gaps= 0 total=37917 # 1dmlA.224.211 read from T0506.t04.many.frag # found chain 1dmlA in template set Warning: unaligning (T0506)S226 (1dmlA)T214 because Y (epsilon') conformation "forbidden" or filtered. T0506 224 :LA 1dmlA 212 :VF T0506 227 :ASDLAR 1dmlA 215 :TSTCVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37919 # 2bopA.224.43 read from T0506.t04.many.frag # found chain 2bopA in training set Warning: unaligning (T0506)A227 (2bopA)G372 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (2bopA)Q373 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bopA)I376 Warning: unaligning (T0506)A231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bopA)I376 T0506 224 :LAS 2bopA 369 :ERQ T0506 229 :D 2bopA 374 :A T0506 232 :R 2bopA 377 :L Number of specific fragments extracted= 3 number of extra gaps= 2 total=37922 # 1w8sA.224.191 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)D229 (1w8sA)V197 because P (beta_P) conformation "forbidden" or filtered. T0506 224 :LASAS 1w8sA 192 :KVAGK T0506 230 :LAR 1w8sA 198 :PVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37924 # 1xodA.225.84 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)A227 (1xodA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1xodA)D93 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1xodA)F96 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :AS 1xodA 90 :RI T0506 229 :DL 1xodA 94 :KK T0506 232 :RL 1xodA 97 :GL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37927 # 2f02A.225.233 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 225 :AS 2f02A 232 :KH T0506 228 :SDLARL 2f02A 235 :DQFYRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=37929 # 1fo8A.225.320 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1fo8A)G428 because T (delta_L) conformation "forbidden" or filtered. T0506 225 :AS 1fo8A 425 :LF T0506 229 :DLARL 1fo8A 429 :RRVHL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37931 # 1go3E.225.99 read from T0506.t04.many.frag # found chain 1go3E in training set T0506 225 :ASASDLARL 1go3E 100 :RLGPLDGLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37932 # 1hxn.225.131 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)D229 (1hxn)R351 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :ASAS 1hxn 347 :MAGR T0506 230 :LARL 1hxn 352 :LWWL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37934 # 1mkfA.225.367 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)S228 (1mkfA)G371 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1mkfA)Q372 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :ASA 1mkfA 368 :MLE T0506 230 :LARL 1mkfA 373 :QYRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37936 # 1ig0A.225.228 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)A225 (1ig0A)L229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. T0506 226 :SASD 1ig0A 230 :IKKN T0506 231 :ARL 1ig0A 235 :TLI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37938 # 1ts9A.225.65 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)D229 (1ts9A)K70 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :ASAS 1ts9A 66 :WYKG T0506 230 :LARL 1ts9A 71 :IMRI Number of specific fragments extracted= 2 number of extra gaps= 1 total=37940 # 1nkiA.225.40 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)S226 (1nkiA)L42 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1nkiA)L45 because P (beta_P) conformation "forbidden" or filtered. T0506 225 :A 1nkiA 41 :E T0506 227 :AS 1nkiA 43 :GS T0506 230 :LARL 1nkiA 46 :WLCL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37943 # 1ze3D.225.104 read from T0506.t04.many.frag # found chain 1ze3D in template set Warning: unaligning (T0506)A225 (1ze3D)D105 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1ze3D)Q109 because L (left) conformation "forbidden" or filtered. T0506 226 :SAS 1ze3D 106 :VGQ T0506 230 :LARL 1ze3D 110 :RLNL Number of specific fragments extracted= 2 number of extra gaps= 2 total=37945 # 1yt5A.225.226 read from T0506.t04.many.frag # found chain 1yt5A in template set Warning: unaligning (T0506)A225 (1yt5A)K227 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)S226 (1yt5A)K228 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1yt5A)S229 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SD 1yt5A 230 :RR T0506 231 :ARL 1yt5A 233 :VRI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37947 # 1g6sA.225.359 read from T0506.t04.many.frag # found chain 1g6sA in training set T0506 225 :ASASDLARL 1g6sA 360 :EEGHDYIRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37948 # 1nh0A.225.13 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :AS 1nh0A 14 :KI T0506 229 :DLAR 1nh0A 18 :QLKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=37950 # 1hi9A.225.240 read from T0506.t04.many.frag # found chain 1hi9A in template set Warning: unaligning (T0506)A227 (1hi9A)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 225 :AS 1hi9A 241 :KT T0506 228 :SDLARL 1hi9A 244 :TTTVQF Number of specific fragments extracted= 2 number of extra gaps= 1 total=37952 # 1w8sA.225.192 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)A227 (1w8sA)G195 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1w8sA)V199 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :AS 1w8sA 193 :VA T0506 228 :SDL 1w8sA 196 :KVP T0506 232 :RL 1w8sA 200 :LM Number of specific fragments extracted= 3 number of extra gaps= 2 total=37955 # 1qb5D.225.40 read from T0506.t04.many.frag # found chain 1qb5D in template set Warning: unaligning (T0506)A225 (1qb5D)S41 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1qb5D)G44 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :SA 1qb5D 42 :ST T0506 229 :DLARL 1qb5D 45 :GVWRI Number of specific fragments extracted= 2 number of extra gaps= 2 total=37957 # 2bf5A.225.83 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)A225 because of BadResidue code BAD_PEPTIDE at template residue (2bf5A)Q88 Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SASD 2bf5A 89 :ADED T0506 231 :ARL 2bf5A 94 :IRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=37959 # 1zdyA.225.165 read from T0506.t04.many.frag # found chain 1zdyA in template set T0506 225 :ASASDLARL 1zdyA 166 :DYKKRQVNL Number of specific fragments extracted= 1 number of extra gaps= 0 total=37960 # 1sv6A.225.248 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)A225 (1sv6A)I249 because D (zeta) conformation "forbidden" or filtered. T0506 226 :SASDLARL 1sv6A 250 :EGIGSVAA Number of specific fragments extracted= 1 number of extra gaps= 1 total=37961 # 1o22A.225.116 read from T0506.t04.many.frag # found chain 1o22A in template set T0506 225 :ASASDLARL 1o22A 105 :LSEKNWYKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37962 # 1mixA.225.165 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)S226 (1mixA)A361 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (1mixA)S362 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1mixA)S365 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :A 1mixA 360 :A T0506 228 :SD 1mixA 363 :PK T0506 231 :ARL 1mixA 366 :FTL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37965 # 1c4qA.225.22 read from T0506.t04.many.frag # found chain 1c4qA in training set Warning: unaligning (T0506)A227 (1c4qA)G125 because S (epsilon) conformation "forbidden" or filtered. T0506 225 :AS 1c4qA 123 :KV T0506 228 :SDLARL 1c4qA 126 :DKELAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37967 # 1wv3A.225.164 read from T0506.t04.many.frag # found chain 1wv3A in template set T0506 225 :ASASDLARL 1wv3A 165 :EVQADGLNV Number of specific fragments extracted= 1 number of extra gaps= 0 total=37968 2bpsA expands to /projects/compbio/data/pdb/2bps.pdb.gz 2bpsA:# 2bpsA.225.14 read from T0506.t04.many.frag # adding 2bpsA to template set # found chain 2bpsA in template set Warning: unaligning (T0506)S226 (2bpsA)G14 because T (delta_L) conformation "forbidden" or filtered. T0506 225 :A 2bpsA 13 :N T0506 227 :ASDLARL 2bpsA 15 :SVFDLRL Number of specific fragments extracted= 2 number of extra gaps= 1 total=37970 1q67A expands to /projects/compbio/data/pdb/1q67.pdb.gz 1q67A:# 1q67A.225.194 read from T0506.t04.many.frag # adding 1q67A to template set # found chain 1q67A in template set T0506 225 :ASASDLARL 1q67A 195 :NLKHEVYGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37971 # 1zx5A.225.122 read from T0506.t04.many.frag # found chain 1zx5A in template set Warning: unaligning (T0506)A227 (1zx5A)N124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1zx5A)G126 because Y (epsilon') conformation "forbidden" or filtered. T0506 225 :AS 1zx5A 122 :VF T0506 228 :S 1zx5A 125 :K T0506 230 :LARL 1zx5A 127 :KAYA Number of specific fragments extracted= 3 number of extra gaps= 2 total=37974 # 1kafA.225.80 read from T0506.t04.many.frag # found chain 1kafA in training set Warning: unaligning (T0506)D229 (1kafA)G188 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1kafA)V190 because E (beta_S) conformation "forbidden" or filtered. T0506 225 :ASAS 1kafA 184 :IAKN T0506 230 :L 1kafA 189 :N T0506 232 :RL 1kafA 191 :YL Number of specific fragments extracted= 3 number of extra gaps= 2 total=37977 # 2bopA.225.44 read from T0506.t04.many.frag # found chain 2bopA in training set Warning: unaligning (T0506)A225 (2bopA)R370 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)A227 (2bopA)G372 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bopA)I376 Warning: unaligning (T0506)A231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bopA)I376 T0506 226 :S 2bopA 371 :Q T0506 228 :SD 2bopA 373 :QA T0506 232 :RL 2bopA 377 :LI Number of specific fragments extracted= 3 number of extra gaps= 3 total=37980 # 1gpr.225.73 read from T0506.t04.many.frag # found chain 1gpr in template set T0506 225 :ASASDLARL 1gpr 74 :SDGGREILI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37981 # 1no5A.225.42 read from T0506.t04.many.frag # found chain 1no5A in training set T0506 225 :ASASDLARL 1no5A 43 :KYSDLDLAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=37982 # 1xodA.226.85 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SASDLA 1xodA 91 :IGDKKF T0506 233 :LW 1xodA 98 :LT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37984 # 2f02A.226.234 read from T0506.t04.many.frag # found chain 2f02A in template set T0506 226 :SASDLARLW 2f02A 233 :HHDQFYRVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=37985 # 1fo8A.226.321 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)S228 (1fo8A)G428 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :SA 1fo8A 426 :FR T0506 229 :DLARLW 1fo8A 429 :RRVHLA Number of specific fragments extracted= 2 number of extra gaps= 1 total=37987 # 1hxn.226.132 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1hxn)R351 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1hxn)L355 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1hxn)D356 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :S 1hxn 348 :A T0506 228 :S 1hxn 350 :R T0506 230 :LAR 1hxn 352 :LWW Number of specific fragments extracted= 3 number of extra gaps= 3 total=37990 # 1g6sA.226.360 read from T0506.t04.many.frag # found chain 1g6sA in training set T0506 226 :SASDLARLW 1g6sA 361 :EGHDYIRIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=37991 # 1mkfA.226.368 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)S226 (1mkfA)L369 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :ASDLARLW 1mkfA 370 :EGQQYRLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=37992 # 1ig0A.226.229 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. T0506 226 :SASD 1ig0A 230 :IKKN T0506 231 :ARLW 1ig0A 235 :TLIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=37994 # 1go3E.226.100 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 1go3E 101 :L T0506 228 :SDLARLW 1go3E 103 :PLDGLIH Number of specific fragments extracted= 2 number of extra gaps= 1 total=37996 # 1ze3D.226.105 read from T0506.t04.many.frag # found chain 1ze3D in template set Warning: unaligning (T0506)D229 (1ze3D)Q109 because L (left) conformation "forbidden" or filtered. T0506 226 :SAS 1ze3D 106 :VGQ T0506 230 :LARLW 1ze3D 110 :RLNLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=37998 # 1ts9A.226.66 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)A227 (1ts9A)K68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1ts9A)G69 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :S 1ts9A 67 :Y T0506 229 :DLARLW 1ts9A 70 :KIMRIK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38000 # 1w8sA.226.193 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)D229 (1w8sA)V197 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :SAS 1w8sA 194 :AGK T0506 230 :LARLW 1w8sA 198 :PVLMS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38002 # 1mixA.226.166 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)A227 (1mixA)S362 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1mixA)S365 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 1mixA 361 :A T0506 228 :SD 1mixA 363 :PK T0506 231 :ARLW 1mixA 366 :FTLD Number of specific fragments extracted= 3 number of extra gaps= 2 total=38005 # 1nkiA.226.41 read from T0506.t04.many.frag # found chain 1nkiA in training set T0506 226 :SASDLARLW 1nkiA 42 :LGSLWLCLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38006 # 2bf5A.226.84 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)A227 (2bf5A)D90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 2bf5A 89 :A T0506 228 :SDLARL 2bf5A 91 :EDQIRF Number of specific fragments extracted= 2 number of extra gaps= 2 total=38008 # 1yt5A.226.227 read from T0506.t04.many.frag # found chain 1yt5A in template set T0506 226 :SASDLARLW 1yt5A 228 :KSRRYVRIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38009 # 1qb5D.226.41 read from T0506.t04.many.frag # found chain 1qb5D in template set Warning: unaligning (T0506)S228 (1qb5D)G44 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1qb5D)W47 because E (beta_S) conformation "forbidden" or filtered. T0506 226 :SA 1qb5D 42 :ST T0506 229 :DL 1qb5D 45 :GV T0506 232 :RLW 1qb5D 48 :RIS Number of specific fragments extracted= 3 number of extra gaps= 2 total=38012 # 1o22A.226.117 read from T0506.t04.many.frag # found chain 1o22A in template set Warning: unaligning (T0506)A227 (1o22A)E107 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1o22A)K108 because S (epsilon) conformation "forbidden" or filtered. T0506 226 :S 1o22A 106 :S T0506 229 :DLARLW 1o22A 109 :NWYKIY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38014 # 1nh0A.226.14 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1nh0A)L23 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :S 1nh0A 15 :I T0506 229 :DLAR 1nh0A 18 :QLKE Number of specific fragments extracted= 2 number of extra gaps= 2 total=38016 # 1sv6A.226.249 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)D229 (1sv6A)G253 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SAS 1sv6A 250 :EGI T0506 230 :LARLW 1sv6A 254 :SVAAT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38018 # 1s12A.226.46 read from T0506.t04.many.frag # found chain 1s12A in template set Warning: unaligning (T0506)A227 (1s12A)E48 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :S 1s12A 47 :K T0506 228 :SDLARLW 1s12A 49 :SGYLKVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38020 # 1acc.226.668 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)D229 (1acc)G672 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :SAS 1acc 669 :RQD T0506 230 :LARLW 1acc 673 :KTFID Number of specific fragments extracted= 2 number of extra gaps= 1 total=38022 # 2bpsA.226.15 read from T0506.t04.many.frag # found chain 2bpsA in template set T0506 226 :SASDLARLW 2bpsA 14 :GSVFDLRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38023 # 1zdyA.226.166 read from T0506.t04.many.frag # found chain 1zdyA in template set T0506 226 :SASDLARLW 1zdyA 167 :YKKRQVNLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38024 # 1hi9A.226.241 read from T0506.t04.many.frag # found chain 1hi9A in template set Warning: unaligning (T0506)A227 (1hi9A)G243 because T (delta_L) conformation "forbidden" or filtered. T0506 226 :S 1hi9A 242 :T T0506 228 :SDLARLW 1hi9A 244 :TTTVQFQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38026 # 1zx5A.226.123 read from T0506.t04.many.frag # found chain 1zx5A in template set Warning: unaligning (T0506)D229 (1zx5A)G126 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SAS 1zx5A 123 :FNK T0506 230 :LARLW 1zx5A 127 :KAYAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38028 1vp4A expands to /projects/compbio/data/pdb/1vp4.pdb.gz 1vp4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 844, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 846, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 987, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 989, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2202, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 2204, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 2206, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 2208, because occupancy 0.500 <= existing 0.500 in 1vp4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3064, because occupancy 0.500 <= existing 0.500 in 1vp4A Skipped atom 3066, because occupancy 0.500 <= existing 0.500 in 1vp4A # 1vp4A.226.386 read from T0506.t04.many.frag # adding 1vp4A to template set # found chain 1vp4A in template set T0506 226 :SASDLARLW 1vp4A 375 :EPSPSMRLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38029 2bsfA expands to /projects/compbio/data/pdb/2bsf.pdb.gz 2bsfA:# 2bsfA.226.88 read from T0506.t04.many.frag # adding 2bsfA to template set # found chain 2bsfA in template set T0506 226 :SASDLARLW 2bsfA 239 :VTSNVVLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38030 # 1no5A.226.43 read from T0506.t04.many.frag # found chain 1no5A in training set Warning: unaligning (T0506)D229 (1no5A)L47 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1no5A)A50 because P (beta_P) conformation "forbidden" or filtered. T0506 226 :SAS 1no5A 44 :YSD T0506 230 :LA 1no5A 48 :DL T0506 233 :LW 1no5A 51 :II Number of specific fragments extracted= 3 number of extra gaps= 2 total=38033 # 1h2wA.226.308 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S228 (1h2wA)Y311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1h2wA)R312 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SA 1h2wA 309 :PN T0506 230 :LARLW 1h2wA 313 :LINID Number of specific fragments extracted= 2 number of extra gaps= 1 total=38035 # 3nul.226.94 read from T0506.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0506)L230 (3nul)A100 because Y (epsilon') conformation "forbidden" or filtered. T0506 226 :SASD 3nul 96 :KTNQ T0506 231 :ARLW 3nul 101 :LVFG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38037 # 1xodA.227.86 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)A227 (1xodA)G92 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1xodA)F96 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1xodA)T99 because P (beta_P) conformation "forbidden" or filtered. T0506 228 :SDL 1xodA 93 :DKK T0506 233 :L 1xodA 98 :L T0506 235 :F 1xodA 100 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=38040 # 1hxn.227.133 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A227 (1hxn)G349 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1hxn)W353 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1hxn)L355 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1hxn)D356 because P (beta_P) conformation "forbidden" or filtered. T0506 228 :SDL 1hxn 350 :RRL T0506 232 :R 1hxn 354 :W T0506 235 :F 1hxn 357 :L Number of specific fragments extracted= 3 number of extra gaps= 3 total=38043 # 1mixA.227.167 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)A227 (1mixA)S362 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1mixA)S365 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SD 1mixA 363 :PK T0506 231 :ARLWF 1mixA 366 :FTLDF Number of specific fragments extracted= 2 number of extra gaps= 2 total=38045 # 1mkfA.227.369 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)R232 (1mkfA)R375 because N (gamma') conformation "forbidden" or filtered. T0506 227 :ASDLA 1mkfA 370 :EGQQY T0506 233 :LWF 1mkfA 376 :LEY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38047 # 2f02A.227.235 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)A227 (2f02A)H234 because S (epsilon) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 2f02A 235 :DQFYRVKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=38048 # 1g6sA.227.361 read from T0506.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1g6sA)I366 because E (beta_S) conformation "forbidden" or filtered. T0506 227 :ASD 1g6sA 362 :GHD T0506 232 :RLWF 1g6sA 367 :RITP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38050 # 1fo8A.227.322 read from T0506.t04.many.frag # found chain 1fo8A in training set Warning: unaligning (T0506)A227 (1fo8A)R427 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1fo8A)G428 because T (delta_L) conformation "forbidden" or filtered. T0506 229 :DLARLWF 1fo8A 429 :RRVHLAP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38051 # 1ts9A.227.67 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)A227 (1ts9A)K68 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)S228 (1ts9A)G69 because T (delta_L) conformation "forbidden" or filtered. T0506 229 :DLARLWF 1ts9A 70 :KIMRIKG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38052 # 1acc.227.669 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)D229 (1acc)G672 because T (delta_L) conformation "forbidden" or filtered. T0506 227 :AS 1acc 670 :QD T0506 230 :LARLWF 1acc 673 :KTFIDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38054 # 1go3E.227.101 read from T0506.t04.many.frag # found chain 1go3E in training set Warning: unaligning (T0506)A227 (1go3E)G102 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1go3E 103 :PLDGLIHV Number of specific fragments extracted= 1 number of extra gaps= 1 total=38055 # 1ze3D.227.106 read from T0506.t04.many.frag # found chain 1ze3D in template set T0506 227 :ASDLARLWF 1ze3D 107 :GQQRLNLTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38056 # 1ig0A.227.230 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D229 (1ig0A)N233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1ig0A)L236 because P (beta_P) conformation "forbidden" or filtered. T0506 227 :AS 1ig0A 231 :KK T0506 231 :A 1ig0A 235 :T T0506 233 :LWF 1ig0A 237 :IEY Number of specific fragments extracted= 3 number of extra gaps= 2 total=38059 # 1w8sA.227.194 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 227 :ASDLARLWF 1w8sA 195 :GKVPVLMSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38060 # 1sv6A.227.250 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)A227 (1sv6A)G251 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1sv6A)G253 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :S 1sv6A 252 :I T0506 230 :LARLWF 1sv6A 254 :SVAATF Number of specific fragments extracted= 2 number of extra gaps= 2 total=38062 # 1s12A.227.47 read from T0506.t04.many.frag # found chain 1s12A in template set T0506 227 :ASDLARLWF 1s12A 48 :ESGYLKVKF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38063 # 1nkiA.227.42 read from T0506.t04.many.frag # found chain 1nkiA in training set T0506 227 :ASDLARLWF 1nkiA 43 :GSLWLCLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38064 # 1nh0A.227.15 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1nh0A)G17 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DL 1nh0A 18 :QL T0506 232 :R 1nh0A 21 :E T0506 234 :WF 1nh0A 23 :LL Number of specific fragments extracted= 3 number of extra gaps= 3 total=38067 # 2bf5A.227.85 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)A227 (2bf5A)D90 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SD 2bf5A 91 :ED T0506 231 :ARL 2bf5A 94 :IRF T0506 235 :F 2bf5A 98 :F Number of specific fragments extracted= 3 number of extra gaps= 3 total=38070 # 1yt5A.227.228 read from T0506.t04.many.frag # found chain 1yt5A in template set Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :ASD 1yt5A 229 :SRR T0506 231 :ARLWF 1yt5A 233 :VRILR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38072 # 1vp4A.227.387 read from T0506.t04.many.frag # found chain 1vp4A in template set T0506 227 :ASDLARLWF 1vp4A 376 :PSPSMRLSF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38073 # 1pmi.227.297 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)A227 because of BadResidue code BAD_PEPTIDE in next template residue (1pmi)D300 Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1pmi)D300 Warning: unaligning (T0506)W234 (1pmi)G306 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLARL 1pmi 301 :NVVRA T0506 235 :F 1pmi 307 :F Number of specific fragments extracted= 2 number of extra gaps= 2 total=38075 # 1o22A.227.118 read from T0506.t04.many.frag # found chain 1o22A in template set Warning: unaligning (T0506)A227 (1o22A)E107 because D (zeta) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1o22A 108 :KNWYKIYV Number of specific fragments extracted= 1 number of extra gaps= 1 total=38076 # 2bpsA.227.16 read from T0506.t04.many.frag # found chain 2bpsA in template set Warning: unaligning (T0506)W234 (2bpsA)S22 because P (beta_P) conformation "forbidden" or filtered. T0506 227 :ASDLARL 2bpsA 15 :SVFDLRL T0506 235 :F 2bpsA 23 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=38078 # 1t3tA.227.908 read from T0506.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)S228 (1t3tA)H902 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1t3tA)C903 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F235 (1t3tA)I909 because G (3-10) conformation "forbidden" or filtered. T0506 227 :A 1t3tA 901 :G T0506 230 :LARLW 1t3tA 904 :GVQVD Number of specific fragments extracted= 2 number of extra gaps= 2 total=38080 # 1qb5D.227.42 read from T0506.t04.many.frag # found chain 1qb5D in template set T0506 227 :ASDLARLWF 1qb5D 43 :TGGVWRISR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38081 # 1h2wA.227.309 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)S228 (1h2wA)Y311 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1h2wA)R312 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1h2wA)I314 because E (beta_S) conformation "forbidden" or filtered. T0506 227 :A 1h2wA 310 :N T0506 230 :L 1h2wA 313 :L T0506 232 :RLWF 1h2wA 315 :NIDF Number of specific fragments extracted= 3 number of extra gaps= 2 total=38084 # 1zx5A.227.124 read from T0506.t04.many.frag # found chain 1zx5A in template set Warning: unaligning (T0506)A227 (1zx5A)N124 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1zx5A)G126 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :S 1zx5A 125 :K T0506 230 :LARLWF 1zx5A 127 :KAYAGF Number of specific fragments extracted= 2 number of extra gaps= 2 total=38086 # 1pjxA.227.288 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)D229 (1pjxA)A291 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :AS 1pjxA 289 :NN T0506 230 :LARLWF 1pjxA 292 :VWKFEW Number of specific fragments extracted= 2 number of extra gaps= 1 total=38088 # 1z90A.227.387 read from T0506.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)D229 (1z90A)S390 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1z90A)P392 because P (beta_P) conformation "forbidden" or filtered. T0506 227 :AS 1z90A 388 :NP T0506 230 :L 1z90A 391 :N T0506 232 :RLWF 1z90A 393 :SIEL Number of specific fragments extracted= 3 number of extra gaps= 2 total=38091 # 2bsfA.227.89 read from T0506.t04.many.frag # found chain 2bsfA in template set Warning: unaligning (T0506)S228 (2bsfA)S241 because Y (epsilon') conformation "forbidden" or filtered. T0506 227 :A 2bsfA 240 :T T0506 229 :DLARLWF 2bsfA 242 :NVVLLTF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38093 # 1xodA.228.87 read from T0506.t04.many.frag # found chain 1xodA in training set T0506 228 :SDLARLWFA 1xodA 93 :DKKFGLTFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38094 # 1hxn.228.134 read from T0506.t04.many.frag # found chain 1hxn in training set T0506 228 :SDLARLWFA 1hxn 350 :RRLWWLDLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38095 # 1mixA.228.168 read from T0506.t04.many.frag # found chain 1mixA in training set T0506 228 :SDLARLWFA 1mixA 363 :PKSFTLDFG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38096 # 1mkfA.228.370 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)S228 (1mkfA)G371 because T (delta_L) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1mkfA)Q372 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1mkfA)R375 because N (gamma') conformation "forbidden" or filtered. T0506 230 :LA 1mkfA 373 :QY T0506 233 :LWFA 1mkfA 376 :LEYF Number of specific fragments extracted= 2 number of extra gaps= 2 total=38098 # 2f02A.228.236 read from T0506.t04.many.frag # found chain 2f02A in template set Warning: unaligning (T0506)S228 (2f02A)D235 because G (3-10) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 2f02A 236 :QFYRVKIP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38099 # 1ts9A.228.68 read from T0506.t04.many.frag # found chain 1ts9A in training set T0506 228 :SDLARLWFA 1ts9A 69 :GKIMRIKGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38100 # 1fo8A.228.323 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 228 :SDLARLWFA 1fo8A 428 :GRRVHLAPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38101 # 1acc.228.670 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)W234 (1acc)D677 because P (beta_P) conformation "forbidden" or filtered. T0506 228 :SDLARL 1acc 671 :DGKTFI T0506 235 :FA 1acc 678 :FK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38103 # 1g6sA.228.362 read from T0506.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SD 1g6sA 363 :HD T0506 231 :ARLWFA 1g6sA 366 :IRITPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38105 # 1go3E.228.102 read from T0506.t04.many.frag # found chain 1go3E in training set T0506 228 :SDLARLWFA 1go3E 103 :PLDGLIHVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38106 # 1s12A.228.48 read from T0506.t04.many.frag # found chain 1s12A in template set T0506 228 :SDLARLWFA 1s12A 49 :SGYLKVKFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38107 # 1ze3D.228.107 read from T0506.t04.many.frag # found chain 1ze3D in template set T0506 228 :SDLARLWFA 1ze3D 108 :QQRLNLTIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38108 # 1sv6A.228.251 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)A236 (1sv6A)S260 because P (beta_P) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1sv6A 252 :IGSVAATF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38109 # 1pmi.228.298 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1pmi)D300 Warning: unaligning (T0506)W234 (1pmi)G306 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1pmi)T308 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLARL 1pmi 301 :NVVRA T0506 235 :F 1pmi 307 :F Number of specific fragments extracted= 2 number of extra gaps= 3 total=38111 # 1ig0A.228.231 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D229 (1ig0A)N233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. T0506 228 :S 1ig0A 232 :K T0506 231 :ARLWFA 1ig0A 235 :TLIEYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38113 # 2bf5A.228.86 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SDLARL 2bf5A 91 :EDQIRF T0506 235 :FA 2bf5A 98 :FD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38115 # 1nkiA.228.43 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A236 (1nkiA)E52 because D (zeta) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1nkiA 44 :SLWLCLSR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38116 # 1nh0A.228.16 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)S228 because of BadResidue code BAD_PEPTIDE at template residue (1nh0A)G17 Warning: unaligning (T0506)D229 (1nh0A)Q18 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 230 :L 1nh0A 19 :L T0506 232 :RLWF 1nh0A 21 :EALL Number of specific fragments extracted= 2 number of extra gaps= 3 total=38118 # 1o22A.228.119 read from T0506.t04.many.frag # found chain 1o22A in template set T0506 228 :SDLARLWFA 1o22A 108 :KNWYKIYVP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38119 # 1vp4A.228.388 read from T0506.t04.many.frag # found chain 1vp4A in template set T0506 228 :SDLARLWFA 1vp4A 377 :SPSMRLSFC Number of specific fragments extracted= 1 number of extra gaps= 0 total=38120 # 1yt5A.228.229 read from T0506.t04.many.frag # found chain 1yt5A in template set Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SD 1yt5A 230 :RR T0506 231 :ARLWFA 1yt5A 233 :VRILRP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38122 # 1h2wA.228.310 read from T0506.t04.many.frag # found chain 1h2wA in training set T0506 228 :SDLARLWFA 1h2wA 311 :YRLINIDFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38123 # 1w8sA.228.195 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 228 :SDLARLWFA 1w8sA 196 :KVPVLMSGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38124 # 1z90A.228.388 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 228 :SDLARLWFA 1z90A 389 :PSNPSIELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38125 # 1pjxA.228.289 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)S228 (1pjxA)N290 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)D229 (1pjxA)A291 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWFA 1pjxA 292 :VWKFEWQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=38126 # 1c7nA.228.324 read from T0506.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)S228 (1c7nA)T325 because S (epsilon) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1c7nA 326 :YLQWIDFR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38127 # 2bpsA.228.17 read from T0506.t04.many.frag # found chain 2bpsA in template set Warning: unaligning (T0506)A236 (2bpsA)Y24 because G (3-10) conformation "forbidden" or filtered. T0506 228 :SDLARLWF 2bpsA 16 :VFDLRLSD Number of specific fragments extracted= 1 number of extra gaps= 1 total=38128 # 1t3tA.228.909 read from T0506.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)S228 (1t3tA)H902 because L (left) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1t3tA 903 :CGVQVDIA Number of specific fragments extracted= 1 number of extra gaps= 1 total=38129 # 1qb5D.228.43 read from T0506.t04.many.frag # found chain 1qb5D in template set Warning: unaligning (T0506)S228 (1qb5D)G44 because T (delta_L) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1qb5D 45 :GVWRISRA Number of specific fragments extracted= 1 number of extra gaps= 1 total=38130 # 1k3iA.228.428 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A236 (1k3iA)G420 because Y (epsilon') conformation "forbidden" or filtered. T0506 228 :SDLARLWF 1k3iA 412 :TNAHIITL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38131 # 1hxn.229.135 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)L233 (1hxn)L355 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :DLAR 1hxn 351 :RLWW T0506 234 :WFAE 1hxn 356 :DLKS Number of specific fragments extracted= 2 number of extra gaps= 1 total=38133 # 1xodA.229.88 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)D229 (1xodA)K94 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1xodA)S102 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LA 1xodA 95 :KF T0506 233 :LWFA 1xodA 98 :LTFQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=38135 # 1mixA.229.169 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)A236 (1mixA)G371 because S (epsilon) conformation "forbidden" or filtered. T0506 229 :DLARLWF 1mixA 364 :KSFTLDF T0506 237 :E 1mixA 372 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=38137 # 1mkfA.229.371 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)E237 (1mkfA)G380 because S (epsilon) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1mkfA 372 :QQYRLEYF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38138 # 1ts9A.229.69 read from T0506.t04.many.frag # found chain 1ts9A in training set T0506 229 :DLARLWFAE 1ts9A 70 :KIMRIKGDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38139 # 1acc.229.671 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)A231 (1acc)T674 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DL 1acc 672 :GK T0506 232 :RLWFAE 1acc 675 :FIDFKK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38141 # 1g6sA.229.363 read from T0506.t04.many.frag # found chain 1g6sA in training set T0506 229 :DLARLWFAE 1g6sA 364 :DYIRITPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38142 # 1fo8A.229.324 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 229 :DLARLWFAE 1fo8A 429 :RRVHLAPPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38143 # 2f02A.229.237 read from T0506.t04.many.frag # found chain 2f02A in template set T0506 229 :DLARLWFAE 2f02A 236 :QFYRVKIPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38144 # 1go3E.229.103 read from T0506.t04.many.frag # found chain 1go3E in training set T0506 229 :DLARLWFAE 1go3E 104 :LDGLIHVSQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38145 # 1pmi.229.299 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)D229 (1pmi)N301 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1pmi 302 :VVRAGFTP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38146 # 1s12A.229.49 read from T0506.t04.many.frag # found chain 1s12A in template set T0506 229 :DLARLWFAE 1s12A 50 :GYLKVKFEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38147 # 1ze3D.229.108 read from T0506.t04.many.frag # found chain 1ze3D in template set Warning: unaligning (T0506)D229 (1ze3D)Q109 because L (left) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1ze3D 110 :RLNLTIPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=38148 # 1sv6A.229.252 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)E237 because last residue in template chain is (1sv6A)S261 T0506 229 :DLARLWFA 1sv6A 253 :GSVAATFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38149 # 1ig0A.229.232 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)D229 (1ig0A)N233 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)F235 (1ig0A)Y239 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :ARLW 1ig0A 235 :TLIE T0506 236 :AE 1ig0A 240 :DP Number of specific fragments extracted= 2 number of extra gaps= 2 total=38151 # 2bf5A.229.87 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :D 2bf5A 92 :D T0506 231 :ARL 2bf5A 94 :IRF T0506 235 :FAE 2bf5A 98 :FDK Number of specific fragments extracted= 3 number of extra gaps= 2 total=38154 # 1c7nA.229.325 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 229 :DLARLWFAE 1c7nA 326 :YLQWIDFRA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38155 # 1h2wA.229.311 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)D229 (1h2wA)R312 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1h2wA 313 :LINIDFTD Number of specific fragments extracted= 1 number of extra gaps= 1 total=38156 # 1nh0A.229.17 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 229 :DL 1nh0A 18 :QL T0506 232 :R 1nh0A 21 :E T0506 234 :WF 1nh0A 23 :LL T0506 237 :E 1nh0A 26 :T Number of specific fragments extracted= 4 number of extra gaps= 3 total=38160 # 1nkiA.229.44 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A236 (1nkiA)E52 because D (zeta) conformation "forbidden" or filtered. T0506 229 :DLARLWF 1nkiA 45 :LWLCLSR T0506 237 :E 1nkiA 53 :P Number of specific fragments extracted= 2 number of extra gaps= 1 total=38162 # 1vp4A.229.389 read from T0506.t04.many.frag # found chain 1vp4A in template set T0506 229 :DLARLWFAE 1vp4A 378 :PSMRLSFCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38163 # 1w8sA.229.196 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)E237 (1w8sA)P205 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1w8sA 197 :VPVLMSGG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38164 # 1yt5A.229.230 read from T0506.t04.many.frag # found chain 1yt5A in template set Warning: unaligning (T0506)L230 (1yt5A)Y232 because Y (epsilon') conformation "forbidden" or filtered. T0506 229 :D 1yt5A 231 :R T0506 231 :ARLWFAE 1yt5A 233 :VRILRPP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38166 # 1o22A.229.120 read from T0506.t04.many.frag # found chain 1o22A in template set T0506 229 :DLARLWFAE 1o22A 109 :NWYKIYVPY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38167 # 1z90A.229.389 read from T0506.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)D229 (1z90A)S390 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1z90A 391 :NPSIELGP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38168 # 1pjxA.229.290 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)D229 (1pjxA)A291 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1pjxA)F295 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1pjxA)R299 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LAR 1pjxA 292 :VWK T0506 234 :WFA 1pjxA 296 :EWQ Number of specific fragments extracted= 2 number of extra gaps= 3 total=38170 # 1t3tA.229.910 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 229 :DLARLWFAE 1t3tA 903 :CGVQVDIAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38171 # 1k3iA.229.429 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)E237 (1k3iA)E421 because P (beta_P) conformation "forbidden" or filtered. T0506 229 :DLARLWFA 1k3iA 413 :NAHIITLG Number of specific fragments extracted= 1 number of extra gaps= 1 total=38172 # 1gmeA.229.105 read from T0506.t04.many.frag # found chain 1gmeA in template set Warning: unaligning (T0506)D229 (1gmeA)F106 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1gmeA 107 :VRRFRLLE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38173 # 1y0kA.229.147 read from T0506.t04.many.frag # found chain 1y0kA in training set T0506 229 :DLARLWFAE 1y0kA 148 :KRAVPDFNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38174 # 1hxn.230.136 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)A231 (1hxn)W353 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1hxn)D356 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1hxn)G360 because S (epsilon) conformation "forbidden" or filtered. T0506 230 :L 1hxn 352 :L T0506 232 :RL 1hxn 354 :WL T0506 235 :FAE 1hxn 357 :LKS Number of specific fragments extracted= 3 number of extra gaps= 3 total=38177 # 1xodA.230.89 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1xodA)T99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1xodA)S102 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LA 1xodA 95 :KF T0506 233 :L 1xodA 98 :L T0506 235 :FA 1xodA 100 :FQ T0506 238 :R 1xodA 103 :P Number of specific fragments extracted= 4 number of extra gaps= 3 total=38181 # 1mixA.230.170 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)L230 (1mixA)S365 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :ARLWFAER 1mixA 366 :FTLDFGDY Number of specific fragments extracted= 1 number of extra gaps= 1 total=38182 # 1acc.230.672 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)R238 (1acc)Y681 because G (3-10) conformation "forbidden" or filtered. T0506 230 :LARLWFAE 1acc 673 :KTFIDFKK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38183 # 1ts9A.230.70 read from T0506.t04.many.frag # found chain 1ts9A in training set T0506 230 :LARLWFAER 1ts9A 71 :IMRIKGDLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38184 # 1pmi.230.300 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)W234 (1pmi)G306 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1pmi)T308 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARL 1pmi 302 :VVRA T0506 235 :F 1pmi 307 :F T0506 237 :ER 1pmi 309 :PK Number of specific fragments extracted= 3 number of extra gaps= 2 total=38187 # 1mkfA.230.372 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)R232 (1mkfA)R375 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1mkfA)G380 because S (epsilon) conformation "forbidden" or filtered. T0506 230 :LA 1mkfA 373 :QY T0506 233 :LWFA 1mkfA 376 :LEYF T0506 238 :R 1mkfA 381 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=38190 # 1go3E.230.104 read from T0506.t04.many.frag # found chain 1go3E in training set T0506 230 :LARLWFAER 1go3E 105 :DGLIHVSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38191 # 1g6sA.230.364 read from T0506.t04.many.frag # found chain 1g6sA in training set Warning: unaligning (T0506)L230 (1g6sA)Y365 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :ARLWFAER 1g6sA 366 :IRITPPEK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38192 # 1fo8A.230.325 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 230 :LARLWFAER 1fo8A 430 :RVHLAPPQT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38193 # 1s12A.230.50 read from T0506.t04.many.frag # found chain 1s12A in template set T0506 230 :LARLWFAER 1s12A 51 :YLKVKFEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38194 # 1w8sA.230.197 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)A231 (1w8sA)V199 because E (beta_S) conformation "forbidden" or filtered. T0506 230 :L 1w8sA 198 :P T0506 232 :RLWFAER 1w8sA 200 :LMSGGPK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38196 # 1c7nA.230.326 read from T0506.t04.many.frag # found chain 1c7nA in template set T0506 230 :LARLWFAER 1c7nA 327 :LQWIDFRAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38197 # 2f02A.230.238 read from T0506.t04.many.frag # found chain 2f02A in template set T0506 230 :LARLWFAER 2f02A 237 :FYRVKIPTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38198 # 1sv6A.230.253 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)E237 because last residue in template chain is (1sv6A)S261 T0506 230 :LARLWFA 1sv6A 254 :SVAATFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38199 # 1ze3D.230.109 read from T0506.t04.many.frag # found chain 1ze3D in template set T0506 230 :LARLWFAER 1ze3D 110 :RLNLTIPQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38200 # 2bf5A.230.88 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)L230 (2bf5A)Q93 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A231 (2bf5A)I94 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RL 2bf5A 95 :RF T0506 235 :FAER 2bf5A 98 :FDKT Number of specific fragments extracted= 2 number of extra gaps= 2 total=38202 # 1nh0A.230.18 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 230 :L 1nh0A 19 :L T0506 232 :RLWF 1nh0A 21 :EALL T0506 237 :ER 1nh0A 26 :TG Number of specific fragments extracted= 3 number of extra gaps= 2 total=38205 # 1h2wA.230.312 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)A231 (1h2wA)I314 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1h2wA)D317 because P (beta_P) conformation "forbidden" or filtered. T0506 230 :L 1h2wA 313 :L T0506 232 :RL 1h2wA 315 :NI T0506 235 :FAER 1h2wA 318 :FTDP Number of specific fragments extracted= 3 number of extra gaps= 2 total=38208 # 1ig0A.230.233 read from T0506.t04.many.frag # found chain 1ig0A in training set Warning: unaligning (T0506)L230 (1ig0A)G234 because L (left) conformation "forbidden" or filtered. T0506 231 :ARLWFAER 1ig0A 235 :TLIEYDPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=38209 # 1t3tA.230.911 read from T0506.t04.many.frag # found chain 1t3tA in template set Warning: unaligning (T0506)R232 (1t3tA)Q906 because D (zeta) conformation "forbidden" or filtered. T0506 230 :LA 1t3tA 904 :GV T0506 233 :LWFAER 1t3tA 907 :VDIAAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38211 # 1k3iA.230.430 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)W234 (1k3iA)T418 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1k3iA)G420 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARL 1k3iA 414 :AHII T0506 235 :F 1k3iA 419 :L T0506 237 :ER 1k3iA 421 :EP Number of specific fragments extracted= 3 number of extra gaps= 2 total=38214 # 1pjxA.230.291 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)E237 (1pjxA)R299 because Y (epsilon') conformation "forbidden" or filtered. T0506 230 :LARLWFA 1pjxA 292 :VWKFEWQ T0506 238 :R 1pjxA 300 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=38216 # 1vp4A.230.390 read from T0506.t04.many.frag # found chain 1vp4A in template set Warning: unaligning (T0506)A231 (1vp4A)M380 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)F235 (1vp4A)F384 because G (3-10) conformation "forbidden" or filtered. T0506 230 :L 1vp4A 379 :S T0506 232 :RLW 1vp4A 381 :RLS T0506 236 :AER 1vp4A 385 :CLP Number of specific fragments extracted= 3 number of extra gaps= 2 total=38219 # 1yt5A.230.231 read from T0506.t04.many.frag # found chain 1yt5A in template set T0506 230 :LARLWFAER 1yt5A 232 :YVRILRPPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38220 # 1z90A.230.390 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 230 :LARLWFAER 1z90A 391 :NPSIELGPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38221 # 1nkiA.230.45 read from T0506.t04.many.frag # found chain 1nkiA in training set Warning: unaligning (T0506)A236 (1nkiA)E52 because D (zeta) conformation "forbidden" or filtered. T0506 230 :LARLWF 1nkiA 46 :WLCLSR T0506 237 :ER 1nkiA 53 :PQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38223 # 1y0kA.230.148 read from T0506.t04.many.frag # found chain 1y0kA in training set T0506 230 :LARLWFAER 1y0kA 149 :RAVPDFNTP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38224 # 1yjsA.230.311 read from T0506.t04.many.frag # found chain 1yjsA in template set T0506 230 :LARLWFAER 1yjsA 312 :LLLVDLRPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38225 # 1gmeA.230.106 read from T0506.t04.many.frag # found chain 1gmeA in template set T0506 230 :LARLWFAER 1gmeA 107 :VRRFRLLED Number of specific fragments extracted= 1 number of extra gaps= 0 total=38226 # 1acc.231.673 read from T0506.t04.many.frag # found chain 1acc in template set T0506 231 :ARLWFAERV 1acc 674 :TFIDFKKYN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38227 # 1pmi.231.301 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)A231 (1pmi)V303 because E (beta_S) conformation "forbidden" or filtered. T0506 232 :RLWFAERV 1pmi 304 :RAGFTPKF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38228 # 1mixA.231.171 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)A236 (1mixA)G371 because S (epsilon) conformation "forbidden" or filtered. T0506 231 :ARLWF 1mixA 366 :FTLDF T0506 237 :ERV 1mixA 372 :DYQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38230 # 1c7nA.231.327 read from T0506.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)V239 (1c7nA)K336 because L (left) conformation "forbidden" or filtered. T0506 231 :ARLWFAER 1c7nA 328 :QWIDFRAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38231 # 1hxn.231.137 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)R238 (1hxn)G360 because S (epsilon) conformation "forbidden" or filtered. T0506 231 :ARLWFAE 1hxn 353 :WWLDLKS T0506 239 :V 1hxn 361 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=38233 # 1w8sA.231.198 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 231 :ARLWFAERV 1w8sA 199 :VLMSGGPKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38234 # 1xodA.231.90 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1xodA)S102 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :A 1xodA 96 :F T0506 233 :LWFA 1xodA 98 :LTFQ T0506 238 :RV 1xodA 103 :PA Number of specific fragments extracted= 3 number of extra gaps= 2 total=38237 # 1ts9A.231.71 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)W234 (1ts9A)K75 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARL 1ts9A 72 :MRI T0506 235 :FAERV 1ts9A 76 :GDLIN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38239 # 1s12A.231.51 read from T0506.t04.many.frag # found chain 1s12A in template set T0506 231 :ARLWFAERV 1s12A 52 :LKVKFEELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38240 # 1yjsA.231.312 read from T0506.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0506)V239 (1yjsA)Q321 because L (left) conformation "forbidden" or filtered. T0506 231 :ARLWFAER 1yjsA 313 :LLVDLRPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=38241 # 1kjnA.231.106 read from T0506.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0506)L233 (1kjnA)I109 because D (zeta) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1kjnA)D112 because Y (epsilon') conformation "forbidden" or filtered. T0506 231 :AR 1kjnA 107 :LA T0506 234 :WF 1kjnA 110 :IF T0506 237 :ERV 1kjnA 113 :RDA Number of specific fragments extracted= 3 number of extra gaps= 2 total=38244 # 1z90A.231.391 read from T0506.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)A231 (1z90A)P392 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R232 (1z90A)S393 because P (beta_P) conformation "forbidden" or filtered. T0506 233 :LWFAERV 1z90A 394 :IELGPEF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38245 # 1mkfA.231.373 read from T0506.t04.many.frag # found chain 1mkfA in template set Warning: unaligning (T0506)F235 (1mkfA)Y378 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 because last residue in template chain is (1mkfA)H382 T0506 231 :ARLW 1mkfA 374 :YRLE T0506 236 :AER 1mkfA 379 :FGD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38247 # 2fnuA.231.286 read from T0506.t04.many.frag # found chain 2fnuA in template set T0506 231 :ARLWFAERV 2fnuA 287 :PILMHQKFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38248 # 1nh0A.231.19 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A231 (1nh0A)K20 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)L233 (1nh0A)A22 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 232 :R 1nh0A 21 :E T0506 234 :WF 1nh0A 23 :LL T0506 237 :ERV 1nh0A 26 :TGA Number of specific fragments extracted= 3 number of extra gaps= 3 total=38251 # 1k3iA.231.431 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A236 (1k3iA)G420 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1k3iA)G423 because T (delta_L) conformation "forbidden" or filtered. T0506 231 :ARLWF 1k3iA 415 :HIITL T0506 237 :ER 1k3iA 421 :EP Number of specific fragments extracted= 2 number of extra gaps= 2 total=38253 # 1fo8A.231.326 read from T0506.t04.many.frag # found chain 1fo8A in training set T0506 231 :ARLWFAERV 1fo8A 431 :VHLAPPQTW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38254 # 1g6sA.231.365 read from T0506.t04.many.frag # found chain 1g6sA in training set T0506 231 :ARLWFAERV 1g6sA 366 :IRITPPEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38255 # 2bf5A.231.89 read from T0506.t04.many.frag # found chain 2bf5A in template set Warning: unaligning (T0506)W234 (2bf5A)Y97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 because last residue in template chain is (2bf5A)M102 T0506 231 :ARL 2bf5A 94 :IRF T0506 235 :FAER 2bf5A 98 :FDKT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38257 # 1sv6A.231.254 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)E237 because last residue in template chain is (1sv6A)S261 T0506 231 :ARLWFA 1sv6A 255 :VAATFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38258 # 1t3tA.231.912 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 231 :ARLWFAERV 1t3tA 905 :VQVDIAALG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38259 # 1ze3D.231.110 read from T0506.t04.many.frag # found chain 1ze3D in template set T0506 231 :ARLWFAERV 1ze3D 111 :LNLTIPQAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38260 # 1u55A.231.173 read from T0506.t04.many.frag # found chain 1u55A in training set Warning: unaligning (T0506)R238 (1u55A)P181 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARLWFAE 1u55A 174 :VRIKFKN T0506 239 :V 1u55A 182 :V Number of specific fragments extracted= 2 number of extra gaps= 1 total=38262 # 3nul.231.99 read from T0506.t04.many.frag # found chain 3nul in training set Warning: unaligning (T0506)V239 (3nul)P109 because C (cis) conformation "forbidden" or filtered. T0506 231 :ARLWFAER 3nul 101 :LVFGFYDE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38263 # 1fsgA.231.75 read from T0506.t04.many.frag # found chain 1fsgA in training set Warning: unaligning (T0506)A231 (1fsgA)H73 because N (gamma') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 because of BadResidue code BAD_PEPTIDE in next template residue (1fsgA)K79 Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE at template residue (1fsgA)K79 Warning: unaligning (T0506)R238 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1fsgA)G80 T0506 232 :RLWF 1fsgA 74 :IICI T0506 239 :V 1fsgA 81 :S Number of specific fragments extracted= 2 number of extra gaps= 2 total=38265 # 1h2wA.231.313 read from T0506.t04.many.frag # found chain 1h2wA in training set Warning: unaligning (T0506)W234 (1h2wA)D317 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARL 1h2wA 314 :INI T0506 235 :FAERV 1h2wA 318 :FTDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38267 # 1pjxA.231.292 read from T0506.t04.many.frag # found chain 1pjxA in training set Warning: unaligning (T0506)W234 (1pjxA)E296 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1pjxA)N300 because P (beta_P) conformation "forbidden" or filtered. T0506 231 :ARL 1pjxA 293 :WKF T0506 235 :FAE 1pjxA 297 :WQR T0506 239 :V 1pjxA 301 :G Number of specific fragments extracted= 3 number of extra gaps= 2 total=38270 # 1gmeA.231.107 read from T0506.t04.many.frag # found chain 1gmeA in template set Warning: unaligning (T0506)E237 (1gmeA)E114 because E (beta_S) conformation "forbidden" or filtered. T0506 231 :ARLWFA 1gmeA 108 :RRFRLL T0506 238 :RV 1gmeA 115 :DA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38272 # 1o22A.231.122 read from T0506.t04.many.frag # found chain 1o22A in template set T0506 231 :ARLWFAERV 1o22A 111 :YKIYVPYSS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38273 # 2f9hA.231.86 read from T0506.t04.many.frag # found chain 2f9hA in template set Warning: unaligning (T0506)R232 (2f9hA)T85 because D (zeta) conformation "forbidden" or filtered. T0506 231 :A 2f9hA 84 :S T0506 233 :LWFAERV 2f9hA 86 :LIFADAP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38275 # 1w8sA.232.199 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 232 :RLWFAERVE 1w8sA 200 :LMSGGPKTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38276 # 1c7nA.232.328 read from T0506.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)V239 (1c7nA)K336 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1c7nA)M337 because E (beta_S) conformation "forbidden" or filtered. T0506 232 :RLWFAER 1c7nA 329 :WIDFRAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38277 # 1kjnA.232.107 read from T0506.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0506)W234 (1kjnA)I110 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1kjnA)D112 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RL 1kjnA 108 :AI T0506 235 :F 1kjnA 111 :F T0506 237 :ERVE 1kjnA 113 :RDAD Number of specific fragments extracted= 3 number of extra gaps= 2 total=38280 # 1z90A.232.392 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 232 :RLWFAERVE 1z90A 393 :SIELGPEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38281 # 1pmi.232.302 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)F235 (1pmi)F307 because L (left) conformation "forbidden" or filtered. T0506 232 :RLW 1pmi 304 :RAG T0506 236 :AERVE 1pmi 308 :TPKFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38283 # 1acc.232.674 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)V239 (1acc)N682 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1acc)D683 because L (left) conformation "forbidden" or filtered. T0506 232 :RLWFAER 1acc 675 :FIDFKKY Number of specific fragments extracted= 1 number of extra gaps= 1 total=38284 # 1yjsA.232.313 read from T0506.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0506)V239 (1yjsA)Q321 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1yjsA)L322 because E (beta_S) conformation "forbidden" or filtered. T0506 232 :RLWFAER 1yjsA 314 :LVDLRPQ Number of specific fragments extracted= 1 number of extra gaps= 1 total=38285 # 1k3iA.232.432 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)V239 (1k3iA)G423 because T (delta_L) conformation "forbidden" or filtered. T0506 232 :RLWFAER 1k3iA 416 :IITLGEP T0506 240 :E 1k3iA 424 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=38287 # 1ts9A.232.72 read from T0506.t04.many.frag # found chain 1ts9A in training set T0506 232 :RLWFAERVE 1ts9A 73 :RIKGDLINF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38288 # 1mixA.232.172 read from T0506.t04.many.frag # found chain 1mixA in training set Warning: unaligning (T0506)F235 (1mixA)F370 because G (3-10) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1mixA)G371 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1mixA)Q374 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RLW 1mixA 367 :TLD T0506 237 :ER 1mixA 372 :DY T0506 240 :E 1mixA 375 :D Number of specific fragments extracted= 3 number of extra gaps= 2 total=38291 # 2fnuA.232.287 read from T0506.t04.many.frag # found chain 2fnuA in template set T0506 232 :RLWFAERVE 2fnuA 288 :ILMHQKFFT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38292 # 2f9hA.232.87 read from T0506.t04.many.frag # found chain 2f9hA in template set T0506 232 :RLWFAERVE 2f9hA 85 :TLIFADAPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38293 # 1nh0A.232.20 read from T0506.t04.many.frag # found chain 1nh0A in training set Warning: unaligning (T0506)A236 (1nh0A)D25 because D (zeta) conformation "forbidden" or filtered. T0506 232 :RLWF 1nh0A 21 :EALL T0506 237 :ERVE 1nh0A 26 :TGAD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38295 # 1s12A.232.52 read from T0506.t04.many.frag # found chain 1s12A in template set Warning: unaligning (T0506)E237 (1s12A)E58 because L (left) conformation "forbidden" or filtered. T0506 232 :RLWFA 1s12A 53 :KVKFE T0506 238 :RVE 1s12A 59 :LEN Number of specific fragments extracted= 2 number of extra gaps= 1 total=38297 # 2b99A.232.97 read from T0506.t04.many.frag # found chain 2b99A in template set T0506 232 :RLWFAERVE 2b99A 98 :VFVHEDEAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38298 # 1y60A.232.115 read from T0506.t04.many.frag # found chain 1y60A in template set Warning: unaligning (T0506)A236 (1y60A)H121 because P (beta_P) conformation "forbidden" or filtered. T0506 232 :RLWF 1y60A 117 :GVFI T0506 237 :ERVE 1y60A 122 :WEAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38300 # 1jx6A.232.79 read from T0506.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0506)V239 (1jx6A)N110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1jx6A)A111 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RLWFAER 1jx6A 103 :NQVFTRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38301 # 1hxn.232.138 read from T0506.t04.many.frag # found chain 1hxn in training set Warning: unaligning (T0506)R238 (1hxn)G360 because S (epsilon) conformation "forbidden" or filtered. T0506 232 :RLWFAE 1hxn 354 :WLDLKS T0506 239 :VE 1hxn 361 :AQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38303 # 1xodA.232.91 read from T0506.t04.many.frag # found chain 1xodA in training set Warning: unaligning (T0506)R232 (1xodA)G97 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)W234 (1xodA)T99 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1xodA)S102 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :L 1xodA 98 :L T0506 235 :FA 1xodA 100 :FQ T0506 238 :RVE 1xodA 103 :PAD Number of specific fragments extracted= 3 number of extra gaps= 3 total=38306 # 1t3tA.232.913 read from T0506.t04.many.frag # found chain 1t3tA in template set T0506 232 :RLWFAERVE 1t3tA 906 :QVDIAALGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38307 # 1u55A.232.174 read from T0506.t04.many.frag # found chain 1u55A in training set Warning: unaligning (T0506)R238 (1u55A)P181 because P (beta_P) conformation "forbidden" or filtered. T0506 232 :RLWFAE 1u55A 175 :RIKFKN T0506 239 :VE 1u55A 182 :VF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38309 # 1hl9A.232.383 read from T0506.t04.many.frag # found chain 1hl9A in template set T0506 232 :RLWFAERVE 1hl9A 384 :FVIFLGIPT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38310 # 1fsgA.232.76 read from T0506.t04.many.frag # found chain 1fsgA in training set Warning: unaligning (T0506)A236 because of BadResidue code BAD_PEPTIDE in next template residue (1fsgA)K79 Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE at template residue (1fsgA)K79 Warning: unaligning (T0506)R238 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1fsgA)G80 T0506 232 :RLWF 1fsgA 74 :IICI T0506 239 :VE 1fsgA 81 :SR Number of specific fragments extracted= 2 number of extra gaps= 1 total=38312 # 1byi.232.173 read from T0506.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1byi)K182 Warning: unaligning (T0506)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1byi)K182 T0506 232 :RLWFAER 1byi 174 :ANDVTPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38313 # 1bf5A.232.211 read from T0506.t04.many.frag # found chain 1bf5A in template set T0506 232 :RLWFAERVE 1bf5A 361 :KVLFDKDVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38314 # 1gweA.232.299 read from T0506.t04.many.frag # found chain 1gweA in training set T0506 232 :RLWFAERVE 1gweA 300 :TLTLNRNPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38315 # 1sv6A.232.255 read from T0506.t04.many.frag # found chain 1sv6A in template set Warning: unaligning (T0506)A236 (1sv6A)S260 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 because last residue in template chain is (1sv6A)S261 T0506 232 :RLWF 1sv6A 256 :AATF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38316 # 1j9lA.232.225 read from T0506.t04.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)A236 (1j9lA)H230 because Y (epsilon') conformation "forbidden" or filtered. T0506 232 :RLWF 1j9lA 226 :ITPI T0506 237 :ERVE 1j9lA 231 :PFLT Number of specific fragments extracted= 2 number of extra gaps= 1 total=38318 # 1musA.232.298 read from T0506.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0506)E237 (1musA)E304 because P (beta_P) conformation "forbidden" or filtered. T0506 232 :RLWFA 1musA 299 :LLLTS T0506 238 :RVE 1musA 305 :PVE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38320 # 1g8mA.232.558 read from T0506.t04.many.frag # found chain 1g8mA in training set T0506 232 :RLWFAERVE 1g8mA 559 :FIVAPSGSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38321 # 1w8sA.233.200 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 233 :LWFAERVET 1w8sA 201 :MSGGPKTKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38322 # 1z90A.233.393 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 233 :LWFAERVET 1z90A 394 :IELGPEFKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38323 # 1kjnA.233.108 read from T0506.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0506)A236 (1kjnA)D112 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :LWF 1kjnA 109 :IIF T0506 237 :ERVET 1kjnA 113 :RDADV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38325 # 1pmi.233.303 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)W234 (1pmi)G306 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)F235 (1pmi)F307 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1pmi)T308 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :L 1pmi 305 :A T0506 237 :ERVET 1pmi 309 :PKFKD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38327 # 1c7nA.233.329 read from T0506.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)V239 (1c7nA)K336 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1c7nA)M337 because E (beta_S) conformation "forbidden" or filtered. T0506 233 :LWFAER 1c7nA 330 :IDFRAL T0506 241 :T 1c7nA 338 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=38329 # 1jx6A.233.80 read from T0506.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0506)V239 (1jx6A)N110 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1jx6A)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T241 (1jx6A)D112 because L (left) conformation "forbidden" or filtered. T0506 233 :LWFAER 1jx6A 104 :QVFTRP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38330 # 2fnuA.233.288 read from T0506.t04.many.frag # found chain 2fnuA in template set Warning: unaligning (T0506)R238 (2fnuA)F294 because G (3-10) conformation "forbidden" or filtered. T0506 233 :LWFAE 2fnuA 289 :LMHQK T0506 239 :VET 2fnuA 295 :FTC Number of specific fragments extracted= 2 number of extra gaps= 1 total=38332 # 1y60A.233.116 read from T0506.t04.many.frag # found chain 1y60A in template set T0506 233 :LWFAERVET 1y60A 118 :VFIHWEAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38333 # 2b99A.233.98 read from T0506.t04.many.frag # found chain 2b99A in template set T0506 233 :LWFAERVET 2b99A 99 :FVHEDEAKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38334 # 1yjsA.233.314 read from T0506.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0506)V239 (1yjsA)Q321 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1yjsA)L322 because E (beta_S) conformation "forbidden" or filtered. T0506 233 :LWFAER 1yjsA 315 :VDLRPQ T0506 241 :T 1yjsA 323 :T Number of specific fragments extracted= 2 number of extra gaps= 1 total=38336 # 1uwkA.233.363 read from T0506.t04.many.frag # found chain 1uwkA in training set Warning: unaligning (T0506)E237 (1uwkA)G368 because T (delta_L) conformation "forbidden" or filtered. T0506 233 :LWFA 1uwkA 364 :AALS T0506 238 :RVET 1uwkA 369 :EAED Number of specific fragments extracted= 2 number of extra gaps= 1 total=38338 # 1musA.233.299 read from T0506.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0506)E237 (1musA)E304 because P (beta_P) conformation "forbidden" or filtered. T0506 233 :LWFA 1musA 300 :LLTS T0506 238 :RVET 1musA 305 :PVES Number of specific fragments extracted= 2 number of extra gaps= 1 total=38340 # 1k3iA.233.433 read from T0506.t04.many.frag # found chain 1k3iA in training set Warning: unaligning (T0506)A236 (1k3iA)G420 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1k3iA)E421 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)V239 (1k3iA)G423 because T (delta_L) conformation "forbidden" or filtered. T0506 233 :LWF 1k3iA 417 :ITL T0506 238 :R 1k3iA 422 :P T0506 240 :ET 1k3iA 424 :TS Number of specific fragments extracted= 3 number of extra gaps= 2 total=38343 # 1gweA.233.300 read from T0506.t04.many.frag # found chain 1gweA in training set T0506 233 :LWFAERVET 1gweA 301 :LTLNRNPEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38344 # 1ts9A.233.73 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)E240 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0506 233 :LWFAERV 1ts9A 74 :IKGDLIN T0506 241 :T 1ts9A 82 :R Number of specific fragments extracted= 2 number of extra gaps= 1 total=38346 # 1byi.233.174 read from T0506.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1byi)K182 Warning: unaligning (T0506)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1byi)K182 Warning: unaligning (T0506)T241 because of BadResidue code BAD_PEPTIDE at template residue (1byi)R183 T0506 233 :LWFAER 1byi 175 :NDVTPP Number of specific fragments extracted= 1 number of extra gaps= 1 total=38347 # 1j9lA.233.226 read from T0506.t04.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)E240 (1j9lA)T234 because P (beta_P) conformation "forbidden" or filtered. T0506 233 :LWFAERV 1j9lA 227 :TPIHPFL T0506 241 :T 1j9lA 235 :N Number of specific fragments extracted= 2 number of extra gaps= 1 total=38349 # 2f9hA.233.88 read from T0506.t04.many.frag # found chain 2f9hA in template set T0506 233 :LWFAERVET 2f9hA 86 :LIFADAPTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38350 # 1nh0A.233.21 read from T0506.t04.many.frag # found chain 1nh0A in training set T0506 233 :LWFAERVET 1nh0A 22 :ALLDTGADD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38351 1w9zA expands to /projects/compbio/data/pdb/1w9z.pdb.gz 1w9zA:# 1w9zA.233.260 read from T0506.t04.many.frag # adding 1w9zA to template set # found chain 1w9zA in template set T0506 233 :LWFAERVET 1w9zA 261 :SAYTKQVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38352 1sczA expands to /projects/compbio/data/pdb/1scz.pdb.gz 1sczA:# 1sczA.233.199 read from T0506.t04.many.frag # adding 1sczA to template set # found chain 1sczA in template set Warning: unaligning (T0506)E240 (1sczA)I378 because E (beta_S) conformation "forbidden" or filtered. T0506 233 :LWFAERV 1sczA 371 :LSYDHRL T0506 241 :T 1sczA 379 :D Number of specific fragments extracted= 2 number of extra gaps= 1 total=38354 # 1bob.233.251 read from T0506.t04.many.frag # found chain 1bob in template set T0506 233 :LWFAERVET 1bob 252 :ITVEDPNEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38355 # 1acc.233.675 read from T0506.t04.many.frag # found chain 1acc in template set Warning: unaligning (T0506)E240 (1acc)D683 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)T241 (1acc)K684 because L (left) conformation "forbidden" or filtered. T0506 233 :LWFAERV 1acc 676 :IDFKKYN Number of specific fragments extracted= 1 number of extra gaps= 1 total=38356 # 1fsgA.233.77 read from T0506.t04.many.frag # found chain 1fsgA in training set Warning: unaligning (T0506)A236 because of BadResidue code BAD_PEPTIDE in next template residue (1fsgA)K79 Warning: unaligning (T0506)E237 because of BadResidue code BAD_PEPTIDE at template residue (1fsgA)K79 Warning: unaligning (T0506)R238 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1fsgA)G80 T0506 233 :LWF 1fsgA 75 :ICI T0506 239 :VET 1fsgA 81 :SRG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38358 # 1bf5A.233.212 read from T0506.t04.many.frag # found chain 1bf5A in template set Warning: unaligning (T0506)A236 (1bf5A)D365 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1bf5A)D367 because L (left) conformation "forbidden" or filtered. T0506 233 :LWF 1bf5A 362 :VLF T0506 237 :E 1bf5A 366 :K T0506 239 :VET 1bf5A 368 :VNE Number of specific fragments extracted= 3 number of extra gaps= 2 total=38361 # 1g8mA.233.559 read from T0506.t04.many.frag # found chain 1g8mA in training set Warning: unaligning (T0506)E237 (1g8mA)S564 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1g8mA)G565 because T (delta_L) conformation "forbidden" or filtered. T0506 233 :LWFA 1g8mA 560 :IVAP T0506 239 :VET 1g8mA 566 :SAA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38363 # 1sh8A.233.86 read from T0506.t04.many.frag # found chain 1sh8A in training set T0506 233 :LWFAERVET 1sh8A 85 :LRFRRPAKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38364 # 1gtkA.233.273 read from T0506.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)L233 (1gtkA)G274 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1gtkA)G278 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WFA 1gtkA 275 :ERR T0506 238 :RVET 1gtkA 279 :APQD Number of specific fragments extracted= 2 number of extra gaps= 2 total=38366 # 1ydxA.233.159 read from T0506.t04.many.frag # found chain 1ydxA in template set T0506 233 :LWFAERVET 1ydxA 137 :IPFTSNKNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38367 # 1y0kA.233.151 read from T0506.t04.many.frag # found chain 1y0kA in training set T0506 233 :LWFAERVET 1y0kA 152 :PDFNTPFPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38368 # 1w8sA.234.201 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)A236 (1w8sA)G204 because S (epsilon) conformation "forbidden" or filtered. T0506 234 :WF 1w8sA 202 :SG T0506 237 :ERVETL 1w8sA 205 :PKTKTE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38370 # 1z90A.234.394 read from T0506.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)A236 (1z90A)G397 because P (beta_P) conformation "forbidden" or filtered. T0506 234 :WF 1z90A 395 :EL T0506 237 :ERVETL 1z90A 398 :PEFKKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38372 # 1jx6A.234.81 read from T0506.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0506)T241 (1jx6A)D112 because L (left) conformation "forbidden" or filtered. T0506 234 :WFAERVE 1jx6A 105 :VFTRPNA T0506 242 :L 1jx6A 113 :I Number of specific fragments extracted= 2 number of extra gaps= 1 total=38374 # 1musA.234.300 read from T0506.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0506)V239 (1musA)V306 because G (3-10) conformation "forbidden" or filtered. T0506 234 :WFAER 1musA 301 :LTSEP T0506 240 :ETL 1musA 307 :ESL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38376 # 1y60A.234.117 read from T0506.t04.many.frag # found chain 1y60A in template set T0506 234 :WFAERVETL 1y60A 119 :FIHWEAADD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38377 # 1kjnA.234.109 read from T0506.t04.many.frag # found chain 1kjnA in template set T0506 234 :WFAERVETL 1kjnA 110 :IFDRDADVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38378 # 2b99A.234.99 read from T0506.t04.many.frag # found chain 2b99A in template set T0506 234 :WFAERVETL 2b99A 100 :VHEDEAKDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38379 # 1w9zA.234.261 read from T0506.t04.many.frag # found chain 1w9zA in template set T0506 234 :WFAERVETL 1w9zA 262 :AYTKQVEEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38380 # 1f3vA.234.123 read from T0506.t04.many.frag # found chain 1f3vA in template set T0506 234 :WFAERVETL 1f3vA 124 :RLDALLADE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38381 # 1pmi.234.304 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)W234 (1pmi)G306 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)A236 (1pmi)T308 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :F 1pmi 307 :F T0506 237 :ERVETL 1pmi 309 :PKFKDV Number of specific fragments extracted= 2 number of extra gaps= 2 total=38383 # 1gweA.234.301 read from T0506.t04.many.frag # found chain 1gweA in training set Warning: unaligning (T0506)E237 (1gweA)R305 because E (beta_S) conformation "forbidden" or filtered. T0506 234 :WFA 1gweA 302 :TLN T0506 238 :RVETL 1gweA 306 :NPENH Number of specific fragments extracted= 2 number of extra gaps= 1 total=38385 # 2fnuA.234.289 read from T0506.t04.many.frag # found chain 2fnuA in template set Warning: unaligning (T0506)W234 (2fnuA)M290 because P (beta_P) conformation "forbidden" or filtered. T0506 235 :FAERVETL 2fnuA 291 :HQKFFTCK Number of specific fragments extracted= 1 number of extra gaps= 1 total=38386 # 1gtkA.234.274 read from T0506.t04.many.frag # found chain 1gtkA in training set T0506 234 :WFAERVETL 1gtkA 275 :ERRGAPQDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38387 # 1ts9A.234.74 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)E240 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WFAERV 1ts9A 75 :KGDLIN T0506 241 :TL 1ts9A 82 :RP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38389 # 1sczA.234.200 read from T0506.t04.many.frag # found chain 1sczA in template set Warning: unaligning (T0506)A236 (1sczA)D374 because N (gamma') conformation "forbidden" or filtered. T0506 234 :WF 1sczA 372 :SY T0506 237 :ERVETL 1sczA 375 :HRLIDG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38391 # 1byi.234.175 read from T0506.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1byi)K182 Warning: unaligning (T0506)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1byi)K182 Warning: unaligning (T0506)T241 because of BadResidue code BAD_PEPTIDE at template residue (1byi)R183 T0506 234 :WFAER 1byi 176 :DVTPP T0506 242 :L 1byi 184 :H Number of specific fragments extracted= 2 number of extra gaps= 1 total=38393 # 1uwkA.234.364 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 234 :WFAERVETL 1uwkA 365 :ALSGEAEDI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38394 # 1j9lA.234.227 read from T0506.t04.many.frag # found chain 1j9lA in template set Warning: unaligning (T0506)A236 (1j9lA)H230 because Y (epsilon') conformation "forbidden" or filtered. T0506 234 :WF 1j9lA 228 :PI T0506 237 :ERVETL 1j9lA 231 :PFLTNE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38396 # 1y0kA.234.152 read from T0506.t04.many.frag # found chain 1y0kA in training set T0506 234 :WFAERVETL 1y0kA 153 :DFNTPFPPP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38397 # 1bob.234.252 read from T0506.t04.many.frag # found chain 1bob in template set Warning: unaligning (T0506)E237 (1bob)D256 because L (left) conformation "forbidden" or filtered. T0506 234 :WFA 1bob 253 :TVE T0506 238 :RVETL 1bob 257 :PNEAF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38399 # 1yjsA.234.315 read from T0506.t04.many.frag # found chain 1yjsA in template set Warning: unaligning (T0506)V239 (1yjsA)Q321 because L (left) conformation "forbidden" or filtered. T0506 234 :WFAER 1yjsA 316 :DLRPQ T0506 240 :ETL 1yjsA 322 :LTG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38401 # 2f6sA.234.174 read from T0506.t04.many.frag # found chain 2f6sA in template set Warning: unaligning (T0506)A236 (2f6sA)S155 because E (beta_S) conformation "forbidden" or filtered. T0506 234 :WF 2f6sA 153 :HL T0506 237 :ERVETL 2f6sA 156 :SNTNDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38403 # 1bf5A.234.213 read from T0506.t04.many.frag # found chain 1bf5A in template set Warning: unaligning (T0506)A236 (1bf5A)D365 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1bf5A)D367 because L (left) conformation "forbidden" or filtered. T0506 234 :WF 1bf5A 363 :LF T0506 237 :E 1bf5A 366 :K T0506 239 :VETL 1bf5A 368 :VNER Number of specific fragments extracted= 3 number of extra gaps= 2 total=38406 # 1nar.234.193 read from T0506.t04.many.frag # found chain 1nar in training set T0506 234 :WFAERVETL 1nar 194 :NQQKPVSTD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38407 2bogX expands to /projects/compbio/data/pdb/2bog.pdb.gz 2bogX:Skipped atom 445, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 447, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 449, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 451, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 453, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 455, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 457, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 459, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 674, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 788, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 790, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 792, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 995, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 997, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1001, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1007, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1009, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1011, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1389, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1391, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1393, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1395, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1397, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1399, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1401, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1403, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1405, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1407, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1474, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1476, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1478, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1480, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1482, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1484, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1486, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1490, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1492, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1494, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1876, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1878, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1880, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1882, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1884, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1886, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1888, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 1890, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2148, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2150, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2152, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2154, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2156, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2158, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2160, because occupancy 0.500 <= existing 0.500 in 2bogX Skipped atom 2162, because occupancy 0.500 <= existing 0.500 in 2bogX # 2bogX.234.82 read from T0506.t04.many.frag # adding 2bogX to template set # found chain 2bogX in template set Warning: unaligning (T0506)R238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bogX)G87 Warning: unaligning (T0506)V239 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)A88 T0506 240 :ETL 2bogX 89 :PSH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38408 # 1jyoA.234.94 read from T0506.t04.many.frag # found chain 1jyoA in template set T0506 234 :WFAERVETL 1jyoA 95 :HAITDLTNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38409 # 1c7nA.234.330 read from T0506.t04.many.frag # found chain 1c7nA in template set Warning: unaligning (T0506)V239 (1c7nA)K336 because L (left) conformation "forbidden" or filtered. T0506 234 :WFAER 1c7nA 331 :DFRAL T0506 240 :ETL 1c7nA 337 :MDH Number of specific fragments extracted= 2 number of extra gaps= 1 total=38411 # 1nh0A.234.22 read from T0506.t04.many.frag # found chain 1nh0A in training set T0506 234 :WFAERVETL 1nh0A 23 :LLDTGADDT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38412 # 1m15A.234.285 read from T0506.t04.many.frag # found chain 1m15A in training set T0506 234 :WFAERVETL 1m15A 286 :QLPKLAKDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38413 # 1jfrA.234.87 read from T0506.t04.many.frag # found chain 1jfrA in template set Warning: unaligning (T0506)V239 (1jfrA)L93 because G (3-10) conformation "forbidden" or filtered. T0506 234 :WFAER 1jfrA 88 :DTNTT T0506 240 :ETL 1jfrA 94 :DQP Number of specific fragments extracted= 2 number of extra gaps= 1 total=38415 # 1w8sA.235.202 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)A236 (1w8sA)G204 because S (epsilon) conformation "forbidden" or filtered. T0506 235 :F 1w8sA 203 :G T0506 237 :ERVETLK 1w8sA 205 :PKTKTEE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38417 # 1z90A.235.395 read from T0506.t04.many.frag # found chain 1z90A in template set Warning: unaligning (T0506)V239 (1z90A)F400 because G (3-10) conformation "forbidden" or filtered. T0506 235 :FAER 1z90A 396 :LGPE T0506 240 :ETLK 1z90A 401 :KKVA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38419 # 1f3vA.235.124 read from T0506.t04.many.frag # found chain 1f3vA in template set T0506 235 :FAERVETLK 1f3vA 125 :LDALLADEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38420 # 1musA.235.301 read from T0506.t04.many.frag # found chain 1musA in template set T0506 235 :FAERVETLK 1musA 302 :TSEPVESLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38421 # 2b99A.235.100 read from T0506.t04.many.frag # found chain 2b99A in template set T0506 235 :FAERVETLK 2b99A 101 :HEDEAKDDK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38422 # 1jx6A.235.82 read from T0506.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0506)E240 (1jx6A)A111 because Y (epsilon') conformation "forbidden" or filtered. Warning: unaligning (T0506)T241 (1jx6A)D112 because L (left) conformation "forbidden" or filtered. T0506 235 :FAERV 1jx6A 106 :FTRPN T0506 242 :LK 1jx6A 113 :IK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38424 # 1y60A.235.118 read from T0506.t04.many.frag # found chain 1y60A in template set T0506 235 :FAERVETLK 1y60A 120 :IHWEAADDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38425 # 1ry9A.235.116 read from T0506.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0506)T241 (1ry9A)D111 because D (zeta) conformation "forbidden" or filtered. T0506 235 :FAERVE 1ry9A 105 :KDDYVH T0506 242 :LK 1ry9A 112 :GI Number of specific fragments extracted= 2 number of extra gaps= 1 total=38427 # 2fnuA.235.290 read from T0506.t04.many.frag # found chain 2fnuA in template set T0506 235 :FAERVETLK 2fnuA 291 :HQKFFTCKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38428 1gw5A expands to /projects/compbio/data/pdb/1gw5.pdb.gz 1gw5A:Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X # 1gw5A.235.539 read from T0506.t04.many.frag # adding 1gw5A to template set # found chain 1gw5A in template set Warning: unaligning (T0506)F235 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X540 Warning: unaligning (T0506)A236 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X541 Warning: unaligning (T0506)E237 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X542 Warning: unaligning (T0506)R238 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X543 Warning: unaligning (T0506)V239 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X544 Warning: unaligning (T0506)E240 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X545 Warning: unaligning (T0506)T241 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X546 Warning: unaligning (T0506)L242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X547 Warning: unaligning (T0506)K243 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X548 Number of specific fragments extracted= 0 number of extra gaps= 1 total=38428 # 2f6sA.235.175 read from T0506.t04.many.frag # found chain 2f6sA in template set T0506 235 :FAERVETLK 2f6sA 154 :LSSNTNDPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38429 # 1nar.235.194 read from T0506.t04.many.frag # found chain 1nar in training set T0506 235 :FAERVETLK 1nar 195 :QQKPVSTDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38430 # 1ts9A.235.75 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)E240 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :FAERV 1ts9A 76 :GDLIN T0506 241 :TLK 1ts9A 82 :RPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38432 # 1ezfA.235.127 read from T0506.t04.many.frag # found chain 1ezfA in template set T0506 235 :FAERVETLK 1ezfA 158 :LDKHVTSEQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38433 # 1u5hA.235.180 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 235 :FAERVETLK 1u5hA 181 :VHLDILDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38434 # 2bogX.235.83 read from T0506.t04.many.frag # found chain 2bogX in template set Warning: unaligning (T0506)R238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bogX)G87 Warning: unaligning (T0506)V239 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)A88 T0506 240 :ETLK 2bogX 89 :PSHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38435 # 1kjnA.235.110 read from T0506.t04.many.frag # found chain 1kjnA in template set Warning: unaligning (T0506)A236 (1kjnA)D112 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :F 1kjnA 111 :F T0506 237 :ERVETLK 1kjnA 113 :RDADVLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38437 # 1ytlA.235.152 read from T0506.t04.many.frag # found chain 1ytlA in training set T0506 235 :FAERVETLK 1ytlA 153 :FGNLWKKEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38438 # 1gtkA.235.275 read from T0506.t04.many.frag # found chain 1gtkA in training set Warning: unaligning (T0506)E237 (1gtkA)G278 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :FA 1gtkA 276 :RR T0506 238 :RVETLK 1gtkA 279 :APQDAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38440 # 1byi.235.176 read from T0506.t04.many.frag # found chain 1byi in training set Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1byi)K182 Warning: unaligning (T0506)E240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1byi)K182 Warning: unaligning (T0506)T241 because of BadResidue code BAD_PEPTIDE at template residue (1byi)R183 T0506 235 :FAER 1byi 177 :VTPP T0506 242 :LK 1byi 184 :HA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38442 # 1uvjA.235.421 read from T0506.t04.many.frag # found chain 1uvjA in template set T0506 235 :FAERVETLK 1uvjA 422 :LNSRIKDMP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38443 # 1w9zA.235.262 read from T0506.t04.many.frag # found chain 1w9zA in template set Warning: unaligning (T0506)R238 (1w9zA)Q266 because D (zeta) conformation "forbidden" or filtered. T0506 235 :FAE 1w9zA 263 :YTK T0506 239 :VETLK 1w9zA 267 :VEEVG Number of specific fragments extracted= 2 number of extra gaps= 1 total=38445 # 1m15A.235.286 read from T0506.t04.many.frag # found chain 1m15A in training set T0506 235 :FAERVETLK 1m15A 287 :LPKLAKDRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38446 # 2bvcA.235.423 read from T0506.t04.many.frag # found chain 2bvcA in template set T0506 235 :FAERVETLK 2bvcA 416 :IPQTPTQLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38447 # 1pmi.235.305 read from T0506.t04.many.frag # found chain 1pmi in training set Warning: unaligning (T0506)A236 (1pmi)T308 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :F 1pmi 307 :F T0506 237 :ERVETLK 1pmi 309 :PKFKDVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=38449 # 1gweA.235.302 read from T0506.t04.many.frag # found chain 1gweA in training set T0506 235 :FAERVETLK 1gweA 303 :LNRNPENHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38450 # 1nbuA.235.65 read from T0506.t04.many.frag # found chain 1nbuA in training set T0506 235 :FAERVETLK 1nbuA 66 :AGPPRKLIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38451 # 4ubpB.235.102 read from T0506.t04.many.frag # found chain 4ubpB in training set Warning: unaligning (T0506)A236 (4ubpB)N104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (4ubpB)G105 because Y (epsilon') conformation "forbidden" or filtered. T0506 235 :F 4ubpB 103 :T T0506 238 :RVETLK 4ubpB 106 :SVDNKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38453 # 1uwkA.235.365 read from T0506.t04.many.frag # found chain 1uwkA in training set T0506 235 :FAERVETLK 1uwkA 366 :LSGEAEDIY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38454 # 1o0sA.235.553 read from T0506.t04.many.frag # found chain 1o0sA in template set Warning: unaligning (T0506)E237 (1o0sA)P556 because C (cis) conformation "forbidden" or filtered. T0506 235 :FA 1o0sA 554 :LY T0506 238 :RVETLK 1o0sA 557 :QPEDLE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38456 # 1w8sA.236.203 read from T0506.t04.many.frag # found chain 1w8sA in template set Warning: unaligning (T0506)A236 (1w8sA)G204 because S (epsilon) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (1w8sA)P205 because P (beta_P) conformation "forbidden" or filtered. T0506 238 :RVETLKQ 1w8sA 206 :KTKTEED Number of specific fragments extracted= 1 number of extra gaps= 1 total=38457 # 1f3vA.236.125 read from T0506.t04.many.frag # found chain 1f3vA in template set T0506 236 :AERVETLKQ 1f3vA 126 :DALLADEER Number of specific fragments extracted= 1 number of extra gaps= 0 total=38458 # 1musA.236.302 read from T0506.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0506)V239 (1musA)V306 because G (3-10) conformation "forbidden" or filtered. T0506 236 :AER 1musA 303 :SEP T0506 240 :ETLKQ 1musA 307 :ESLAQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=38460 # 1z90A.236.396 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 236 :AERVETLKQ 1z90A 397 :GPEFKKVAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38461 # 1y60A.236.119 read from T0506.t04.many.frag # found chain 1y60A in template set T0506 236 :AERVETLKQ 1y60A 121 :HWEAADDAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38462 # 1ry9A.236.117 read from T0506.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0506)R238 (1ry9A)Y108 because G (3-10) conformation "forbidden" or filtered. T0506 236 :AE 1ry9A 106 :DD T0506 239 :VETLKQ 1ry9A 109 :VHDGIV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38464 # 1u5hA.236.181 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 236 :AERVETLKQ 1u5hA 182 :HLDILDVEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38465 # 1nar.236.195 read from T0506.t04.many.frag # found chain 1nar in training set T0506 236 :AERVETLKQ 1nar 196 :QKPVSTDDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38466 # 2f6sA.236.176 read from T0506.t04.many.frag # found chain 2f6sA in template set Warning: unaligning (T0506)A236 (2f6sA)S155 because E (beta_S) conformation "forbidden" or filtered. T0506 237 :ERVETLKQ 2f6sA 156 :SNTNDPLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38467 # 1ezfA.236.128 read from T0506.t04.many.frag # found chain 1ezfA in template set Warning: unaligning (T0506)E237 (1ezfA)K160 because E (beta_S) conformation "forbidden" or filtered. T0506 236 :A 1ezfA 159 :D T0506 238 :RVETLKQ 1ezfA 161 :HVTSEQE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38469 # 2b99A.236.101 read from T0506.t04.many.frag # found chain 2b99A in template set Warning: unaligning (T0506)T241 (2b99A)D107 because Y (epsilon') conformation "forbidden" or filtered. T0506 236 :AERVE 2b99A 102 :EDEAK T0506 242 :LKQ 2b99A 108 :DKE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38471 # 4ubpB.236.103 read from T0506.t04.many.frag # found chain 4ubpB in training set Warning: unaligning (T0506)A236 (4ubpB)N104 because L (left) conformation "forbidden" or filtered. Warning: unaligning (T0506)E237 (4ubpB)G105 because Y (epsilon') conformation "forbidden" or filtered. T0506 238 :RVETLKQ 4ubpB 106 :SVDNKEL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38472 # 1jx6A.236.83 read from T0506.t04.many.frag # found chain 1jx6A in training set Warning: unaligning (T0506)E237 (1jx6A)R108 because P (beta_P) conformation "forbidden" or filtered. Warning: unaligning (T0506)E240 (1jx6A)A111 because Y (epsilon') conformation "forbidden" or filtered. T0506 236 :A 1jx6A 107 :T T0506 238 :RV 1jx6A 109 :PN T0506 241 :TLKQ 1jx6A 112 :DIKQ Number of specific fragments extracted= 3 number of extra gaps= 2 total=38475 # 1w9zA.236.263 read from T0506.t04.many.frag # found chain 1w9zA in template set T0506 236 :AERVETLKQ 1w9zA 264 :TKQVEEVGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38476 # 1gw5A.236.540 read from T0506.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0506)A236 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X541 Warning: unaligning (T0506)E237 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X542 Warning: unaligning (T0506)R238 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X543 Warning: unaligning (T0506)V239 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X544 Warning: unaligning (T0506)E240 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X545 Warning: unaligning (T0506)T241 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X546 Warning: unaligning (T0506)L242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X547 Warning: unaligning (T0506)K243 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X548 Warning: unaligning (T0506)Q244 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X549 Number of specific fragments extracted= 0 number of extra gaps= 1 total=38476 # 1qyrA.236.184 read from T0506.t04.many.frag # found chain 1qyrA in template set Warning: unaligning (T0506)E237 (1qyrA)H202 because D (zeta) conformation "forbidden" or filtered. T0506 236 :A 1qyrA 201 :P T0506 238 :RVETLKQ 1qyrA 203 :PVKDVRV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38478 # 1m15A.236.287 read from T0506.t04.many.frag # found chain 1m15A in training set Warning: unaligning (T0506)V239 (1m15A)A291 because G (3-10) conformation "forbidden" or filtered. T0506 236 :AER 1m15A 288 :PKL T0506 240 :ETLKQ 1m15A 292 :KDRKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38480 # 2bogX.236.84 read from T0506.t04.many.frag # found chain 2bogX in template set Warning: unaligning (T0506)R238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bogX)G87 Warning: unaligning (T0506)V239 because of BadResidue code BAD_PEPTIDE at template residue (2bogX)A88 T0506 240 :ETLKQ 2bogX 89 :PSHSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38481 # 1uvjA.236.422 read from T0506.t04.many.frag # found chain 1uvjA in template set T0506 236 :AERVETLKQ 1uvjA 423 :NSRIKDMPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38482 # 1e0tA.236.419 read from T0506.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0506)R238 (1e0tA)E422 because Y (epsilon') conformation "forbidden" or filtered. T0506 236 :AE 1e0tA 420 :VK T0506 239 :VETLKQ 1e0tA 423 :ITSTDD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38484 # 1nbuA.236.66 read from T0506.t04.many.frag # found chain 1nbuA in training set Warning: unaligning (T0506)R238 (1nbuA)P69 because P (beta_P) conformation "forbidden" or filtered. T0506 236 :AE 1nbuA 67 :GP T0506 239 :VETLKQ 1nbuA 70 :RKLIET Number of specific fragments extracted= 2 number of extra gaps= 1 total=38486 # 2bvcA.236.424 read from T0506.t04.many.frag # found chain 2bvcA in template set Warning: unaligning (T0506)E237 (2bvcA)Q418 because P (beta_P) conformation "forbidden" or filtered. T0506 236 :A 2bvcA 417 :P T0506 238 :RVETLKQ 2bvcA 419 :TPTQLSD Number of specific fragments extracted= 2 number of extra gaps= 1 total=38488 # 2av4A.236.122 read from T0506.t04.many.frag # found chain 2av4A in template set T0506 236 :AERVETLKQ 2av4A 121 :NWPMNNKQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38489 # 2fnuA.236.291 read from T0506.t04.many.frag # found chain 2fnuA in template set T0506 236 :AERVETLKQ 2fnuA 292 :QKFFTCKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38490 1yhtA expands to /projects/compbio/data/pdb/1yht.pdb.gz 1yhtA:# 1yhtA.236.185 read from T0506.t04.many.frag # adding 1yhtA to template set # found chain 1yhtA in template set Warning: unaligning (T0506)A236 (1yhtA)G186 because L (left) conformation "forbidden" or filtered. T0506 237 :ERVETLKQ 1yhtA 187 :YSVESNHE Number of specific fragments extracted= 1 number of extra gaps= 1 total=38491 # 1ts9A.236.76 read from T0506.t04.many.frag # found chain 1ts9A in training set Warning: unaligning (T0506)E240 (1ts9A)F81 because Y (epsilon') conformation "forbidden" or filtered. T0506 236 :AERV 1ts9A 77 :DLIN T0506 241 :TLKQ 1ts9A 82 :RPED Number of specific fragments extracted= 2 number of extra gaps= 1 total=38493 # 1u02A.236.205 read from T0506.t04.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)T241 (1u02A)D211 because Y (epsilon') conformation "forbidden" or filtered. T0506 236 :AERVE 1u02A 206 :KFHVA T0506 242 :LKQ 1u02A 212 :YIE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38495 # 1ytlA.236.153 read from T0506.t04.many.frag # found chain 1ytlA in training set T0506 236 :AERVETLKQ 1ytlA 154 :GNLWKKEED Number of specific fragments extracted= 1 number of extra gaps= 0 total=38496 # 1ik9A.236.112 read from T0506.t04.many.frag # found chain 1ik9A in template set Warning: unaligning (T0506)E237 (1ik9A)E114 because E (beta_S) conformation "forbidden" or filtered. Warning: unaligning (T0506)R238 (1ik9A)K115 because P (beta_P) conformation "forbidden" or filtered. T0506 236 :A 1ik9A 113 :L T0506 239 :VETLKQ 1ik9A 116 :VENPAE Number of specific fragments extracted= 2 number of extra gaps= 1 total=38498 # 1uw4B.236.219 read from T0506.t04.many.frag # found chain 1uw4B in template set T0506 236 :AERVETLKQ 1uw4B 987 :IKLCNSLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38499 # 1w8sA.237.204 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 237 :ERVETLKQF 1w8sA 205 :PKTKTEEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38500 # 1f3vA.237.126 read from T0506.t04.many.frag # found chain 1f3vA in template set T0506 237 :ERVETLKQF 1f3vA 127 :ALLADEERC Number of specific fragments extracted= 1 number of extra gaps= 0 total=38501 # 2f6sA.237.177 read from T0506.t04.many.frag # found chain 2f6sA in template set T0506 237 :ERVETLKQF 2f6sA 156 :SNTNDPLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38502 # 1gw5A.237.541 read from T0506.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0506)E237 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X542 Warning: unaligning (T0506)R238 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X543 Warning: unaligning (T0506)V239 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X544 Warning: unaligning (T0506)E240 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X545 Warning: unaligning (T0506)T241 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X546 Warning: unaligning (T0506)L242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X547 Warning: unaligning (T0506)K243 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X548 Warning: unaligning (T0506)Q244 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X549 Warning: unaligning (T0506)F245 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X550 Number of specific fragments extracted= 0 number of extra gaps= 1 total=38502 # 1ry9A.237.118 read from T0506.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0506)R238 (1ry9A)Y108 because G (3-10) conformation "forbidden" or filtered. T0506 237 :E 1ry9A 107 :D T0506 239 :VETLKQF 1ry9A 109 :VHDGIVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38504 # 1nar.237.196 read from T0506.t04.many.frag # found chain 1nar in training set T0506 237 :ERVETLKQF 1nar 197 :KPVSTDDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38505 # 1musA.237.303 read from T0506.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0506)R238 (1musA)P305 because P (beta_P) conformation "forbidden" or filtered. T0506 237 :E 1musA 304 :E T0506 239 :VETLKQF 1musA 306 :VESLAQA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38507 # 1u5hA.237.182 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 237 :ERVETLKQF 1u5hA 183 :LDILDVEGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38508 # 1ytlA.237.154 read from T0506.t04.many.frag # found chain 1ytlA in training set Warning: unaligning (T0506)T241 (1ytlA)K159 because D (zeta) conformation "forbidden" or filtered. T0506 237 :ERVE 1ytlA 155 :NLWK T0506 242 :LKQF 1ytlA 160 :EEDY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38510 # 1y60A.237.120 read from T0506.t04.many.frag # found chain 1y60A in template set T0506 237 :ERVETLKQF 1y60A 122 :WEAADDAKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38511 # 1qyrA.237.185 read from T0506.t04.many.frag # found chain 1qyrA in template set T0506 237 :ERVETLKQF 1qyrA 202 :HPVKDVRVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38512 # 1u02A.237.206 read from T0506.t04.many.frag # found chain 1u02A in template set Warning: unaligning (T0506)T241 (1u02A)D211 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :ERVE 1u02A 207 :FHVA T0506 242 :LKQF 1u02A 212 :YIEM Number of specific fragments extracted= 2 number of extra gaps= 1 total=38514 # 1z90A.237.397 read from T0506.t04.many.frag # found chain 1z90A in template set T0506 237 :ERVETLKQF 1z90A 398 :PEFKKVATF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38515 # 1uw4B.237.220 read from T0506.t04.many.frag # found chain 1uw4B in template set Warning: unaligning (T0506)T241 (1uw4B)S992 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :ERVE 1uw4B 988 :KLCN T0506 242 :LKQF 1uw4B 993 :LEES Number of specific fragments extracted= 2 number of extra gaps= 1 total=38517 # 2av4A.237.123 read from T0506.t04.many.frag # found chain 2av4A in template set T0506 237 :ERVETLKQF 2av4A 122 :WPMNNKQEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38518 # 4ubpB.237.104 read from T0506.t04.many.frag # found chain 4ubpB in training set Warning: unaligning (T0506)E237 (4ubpB)G105 because Y (epsilon') conformation "forbidden" or filtered. T0506 238 :RVETLKQF 4ubpB 106 :SVDNKELI Number of specific fragments extracted= 1 number of extra gaps= 1 total=38519 # 1uocA.237.177 read from T0506.t04.many.frag # found chain 1uocA in template set T0506 237 :ERVETLKQF 1uocA 178 :SMPNNKEDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38520 # 2a1rA.237.302 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 237 :ERVETLKQF 2a1rA 303 :PLPADLSEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38521 1vqoP expands to /projects/compbio/data/pdb/1vqo.pdb.gz 1vqoP:# 1vqoP.237.129 read from T0506.t04.many.frag # adding 1vqoP to template set # found chain 1vqoP in template set Warning: unaligning (T0506)E237 (1vqoP)G129 because L (left) conformation "forbidden" or filtered. T0506 238 :RVETLKQF 1vqoP 130 :EFDSVADL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38522 # 1e0tA.237.420 read from T0506.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0506)R238 (1e0tA)E422 because Y (epsilon') conformation "forbidden" or filtered. T0506 237 :E 1e0tA 421 :K T0506 239 :VETLKQF 1e0tA 423 :ITSTDDF Number of specific fragments extracted= 2 number of extra gaps= 1 total=38524 # 1ub0A.237.146 read from T0506.t04.many.frag # found chain 1ub0A in template set Warning: unaligning (T0506)E237 (1ub0A)R147 because P (beta_P) conformation "forbidden" or filtered. T0506 238 :RVETLKQF 1ub0A 148 :PIRTLKEA Number of specific fragments extracted= 1 number of extra gaps= 1 total=38525 # 1nbuA.237.67 read from T0506.t04.many.frag # found chain 1nbuA in training set Warning: unaligning (T0506)R238 (1nbuA)P69 because P (beta_P) conformation "forbidden" or filtered. T0506 237 :E 1nbuA 68 :P T0506 239 :VETLKQF 1nbuA 70 :RKLIETV Number of specific fragments extracted= 2 number of extra gaps= 1 total=38527 # 1m15A.237.288 read from T0506.t04.many.frag # found chain 1m15A in training set Warning: unaligning (T0506)V239 (1m15A)A291 because G (3-10) conformation "forbidden" or filtered. T0506 237 :ER 1m15A 289 :KL T0506 240 :ETLKQF 1m15A 292 :KDRKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38529 # 2fnuA.237.292 read from T0506.t04.many.frag # found chain 2fnuA in template set T0506 237 :ERVETLKQF 2fnuA 293 :KFFTCKKLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38530 # 1oi7A.237.270 read from T0506.t04.many.frag # found chain 1oi7A in training set T0506 237 :ERVETLKQF 1oi7A 271 :PVADTIDEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38531 # 1z72A.237.195 read from T0506.t04.many.frag # found chain 1z72A in template set Warning: unaligning (T0506)E237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z72A)R195 Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z72A)R195 T0506 240 :ETLKQF 1z72A 196 :EDLTEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38532 1wcwA expands to /projects/compbio/data/pdb/1wcw.pdb.gz 1wcwA:# 1wcwA.237.199 read from T0506.t04.many.frag # adding 1wcwA to template set # found chain 1wcwA in template set T0506 237 :ERVETLKQF 1wcwA 200 :EGAKDPKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38533 # 1w9zA.237.264 read from T0506.t04.many.frag # found chain 1w9zA in template set T0506 237 :ERVETLKQF 1w9zA 265 :KQVEEVGVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38534 # 1fr2B.237.44 read from T0506.t04.many.frag # found chain 1fr2B in training set T0506 237 :ERVETLKQF 1fr2B 45 :KEFKSFDDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38535 # 1s29A.237.57 read from T0506.t04.many.frag # found chain 1s29A in training set T0506 237 :ERVETLKQF 1s29A 58 :SVTTDVKEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38536 # 1f3vA.238.127 read from T0506.t04.many.frag # found chain 1f3vA in template set T0506 238 :RVETLKQFE 1f3vA 128 :LLADEERCL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38537 # 1w8sA.238.205 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 238 :RVETLKQFE 1w8sA 206 :KTKTEEDFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38538 # 1y60A.238.121 read from T0506.t04.many.frag # found chain 1y60A in template set T0506 238 :RVETLKQFE 1y60A 123 :EAADDAKIQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38539 # 1nar.238.197 read from T0506.t04.many.frag # found chain 1nar in training set Warning: unaligning (T0506)R238 (1nar)P198 because P (beta_P) conformation "forbidden" or filtered. T0506 239 :VETLKQFE 1nar 199 :VSTDDAFV Number of specific fragments extracted= 1 number of extra gaps= 1 total=38540 # 1u5hA.238.183 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 238 :RVETLKQFE 1u5hA 184 :DILDVEGLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38541 # 1qyrA.238.186 read from T0506.t04.many.frag # found chain 1qyrA in template set T0506 238 :RVETLKQFE 1qyrA 203 :PVKDVRVLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38542 # 2f6sA.238.178 read from T0506.t04.many.frag # found chain 2f6sA in template set T0506 238 :RVETLKQFE 2f6sA 157 :NTNDPLTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38543 # 1ry9A.238.119 read from T0506.t04.many.frag # found chain 1ry9A in template set Warning: unaligning (T0506)T241 (1ry9A)D111 because D (zeta) conformation "forbidden" or filtered. T0506 238 :RVE 1ry9A 108 :YVH T0506 242 :LKQFE 1ry9A 112 :GIVFA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38545 # 1gw5A.238.542 read from T0506.t04.many.frag # found chain 1gw5A in template set Warning: unaligning (T0506)R238 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X543 Warning: unaligning (T0506)V239 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X544 Warning: unaligning (T0506)E240 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X545 Warning: unaligning (T0506)T241 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X546 Warning: unaligning (T0506)L242 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X547 Warning: unaligning (T0506)K243 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X548 Warning: unaligning (T0506)Q244 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X549 Warning: unaligning (T0506)F245 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X550 Warning: unaligning (T0506)E246 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1gw5A)X551 Number of specific fragments extracted= 0 number of extra gaps= 1 total=38545 # 2av4A.238.124 read from T0506.t04.many.frag # found chain 2av4A in template set T0506 238 :RVETLKQFE 2av4A 123 :PMNNKQEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38546 # 1u02A.238.207 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 238 :RVETLKQFE 1u02A 208 :HVADYIEMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38547 # 1ytlA.238.155 read from T0506.t04.many.frag # found chain 1ytlA in training set T0506 238 :RVETLKQFE 1ytlA 156 :LWKKEEDYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38548 # 1l3lA.238.216 read from T0506.t04.many.frag # found chain 1l3lA in training set Warning: unaligning (T0506)R238 (1l3lA)D217 because L (left) conformation "forbidden" or filtered. T0506 239 :VETLKQFE 1l3lA 218 :VRSKAHLT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38549 # 1qqfA.238.235 read from T0506.t04.many.frag # found chain 1qqfA in training set T0506 238 :RVETLKQFE 1qqfA 1245 :DFDSVPPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38550 # 1musA.238.304 read from T0506.t04.many.frag # found chain 1musA in template set Warning: unaligning (T0506)V239 (1musA)V306 because G (3-10) conformation "forbidden" or filtered. T0506 238 :R 1musA 305 :P T0506 240 :ETLKQFE 1musA 307 :ESLAQAL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38552 # 1uw4B.238.221 read from T0506.t04.many.frag # found chain 1uw4B in template set T0506 238 :RVETLKQFE 1uw4B 989 :LCNSLEESI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38553 # 1ub0A.238.147 read from T0506.t04.many.frag # found chain 1ub0A in template set T0506 238 :RVETLKQFE 1ub0A 148 :PIRTLKEAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38554 # 1pb7A.238.256 read from T0506.t04.many.frag # found chain 1pb7A in training set Warning: unaligning (T0506)R238 (1pb7A)D257 because L (left) conformation "forbidden" or filtered. T0506 239 :VETLKQFE 1pb7A 258 :SPWKQNVS Number of specific fragments extracted= 1 number of extra gaps= 1 total=38555 # 1pot.238.240 read from T0506.t04.many.frag # found chain 1pot in training set T0506 238 :RVETLKQFE 1pot 264 :NAKNKEGAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38556 # 4ubpB.238.105 read from T0506.t04.many.frag # found chain 4ubpB in training set T0506 238 :RVETLKQFE 4ubpB 106 :SVDNKELIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38557 # 1uddA.238.185 read from T0506.t04.many.frag # found chain 1uddA in template set Warning: unaligning (T0506)R238 (1uddA)G186 because P (beta_P) conformation "forbidden" or filtered. T0506 239 :VETLKQFE 1uddA 187 :HSGYDRLR Number of specific fragments extracted= 1 number of extra gaps= 1 total=38558 # 1ursA.238.294 read from T0506.t04.many.frag # found chain 1ursA in training set T0506 238 :RVETLKQFE 1ursA 295 :ESKTQAADW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38559 # 3thiA.238.270 read from T0506.t04.many.frag # found chain 3thiA in template set T0506 238 :RVETLKQFE 3thiA 279 :KTAHPELAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38560 # 1z72A.238.196 read from T0506.t04.many.frag # found chain 1z72A in template set Warning: unaligning (T0506)V239 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z72A)R195 T0506 240 :ETLKQFE 1z72A 196 :EDLTELQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38561 # 1wcwA.238.200 read from T0506.t04.many.frag # found chain 1wcwA in template set T0506 238 :RVETLKQFE 1wcwA 201 :GAKDPKALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38562 # 1nnfA.238.234 read from T0506.t04.many.frag # found chain 1nnfA in training set T0506 238 :RVETLKQFE 1nnfA 235 :ASKNQAEAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38563 # 1vqoP.238.130 read from T0506.t04.many.frag # found chain 1vqoP in template set T0506 238 :RVETLKQFE 1vqoP 130 :EFDSVADLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38564 # 1e0tA.238.421 read from T0506.t04.many.frag # found chain 1e0tA in training set Warning: unaligning (T0506)T241 (1e0tA)S425 because Y (epsilon') conformation "forbidden" or filtered. T0506 238 :RVE 1e0tA 422 :EIT T0506 242 :LKQFE 1e0tA 426 :TDDFY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38566 # 1zvdA.238.355 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 238 :RVETLKQFE 1zvdA 724 :PYESYEKLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38567 # 1yhtA.238.187 read from T0506.t04.many.frag # found chain 1yhtA in template set T0506 238 :RVETLKQFE 1yhtA 188 :SVESNHEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38568 # 1f3vA.239.128 read from T0506.t04.many.frag # found chain 1f3vA in template set T0506 239 :VETLKQFEK 1f3vA 129 :LADEERCLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38569 # 1nar.239.198 read from T0506.t04.many.frag # found chain 1nar in training set T0506 239 :VETLKQFEK 1nar 199 :VSTDDAFVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38570 # 1w8sA.239.206 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 239 :VETLKQFEK 1w8sA 207 :TKTEEDFLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38571 # 1pb7A.239.257 read from T0506.t04.many.frag # found chain 1pb7A in training set T0506 239 :VETLKQFEK 1pb7A 258 :SPWKQNVSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38572 # 1u02A.239.208 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 239 :VETLKQFEK 1u02A 209 :VADYIEMRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38573 # 1l3lA.239.217 read from T0506.t04.many.frag # found chain 1l3lA in training set T0506 239 :VETLKQFEK 1l3lA 218 :VRSKAHLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38574 # 1u5hA.239.184 read from T0506.t04.many.frag # found chain 1u5hA in template set T0506 239 :VETLKQFEK 1u5hA 185 :ILDVEGLQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38575 # 1vqoP.239.131 read from T0506.t04.many.frag # found chain 1vqoP in template set Warning: unaligning (T0506)T241 (1vqoP)S133 because Y (epsilon') conformation "forbidden" or filtered. T0506 239 :VE 1vqoP 131 :FD T0506 242 :LKQFEK 1vqoP 134 :VADLER Number of specific fragments extracted= 2 number of extra gaps= 1 total=38577 # 1ytlA.239.156 read from T0506.t04.many.frag # found chain 1ytlA in training set T0506 239 :VETLKQFEK 1ytlA 157 :WKKEEDYLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38578 # 2bg5A.239.305 read from T0506.t04.many.frag # found chain 2bg5A in template set T0506 239 :VETLKQFEK 2bg5A 555 :MSEAREIEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38579 # 1ub0A.239.148 read from T0506.t04.many.frag # found chain 1ub0A in template set T0506 239 :VETLKQFEK 1ub0A 149 :IRTLKEAEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38580 # 1sflA.239.137 read from T0506.t04.many.frag # found chain 1sflA in template set T0506 239 :VETLKQFEK 1sflA 138 :TPPLDELQF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38581 # 1ta8A.239.260 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 239 :VETLKQFEK 1ta8A 261 :CQSIDEVWA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38582 # 1oi7A.239.272 read from T0506.t04.many.frag # found chain 1oi7A in training set T0506 239 :VETLKQFEK 1oi7A 273 :ADTIDEIVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38583 1tf0B expands to /projects/compbio/data/pdb/1tf0.pdb.gz 1tf0B:# 1tf0B.239.34 read from T0506.t04.many.frag # adding 1tf0B to template set # found chain 1tf0B in template set T0506 239 :VETLKQFEK 1tf0B 35 :AKTVEEVNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38584 # 2av4A.239.125 read from T0506.t04.many.frag # found chain 2av4A in template set T0506 239 :VETLKQFEK 2av4A 124 :MNNKQEFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=38585 # 2f6sA.239.179 read from T0506.t04.many.frag # found chain 2f6sA in template set T0506 239 :VETLKQFEK 2f6sA 158 :TNDPLTLIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38586 # 1sx5A.239.228 read from T0506.t04.many.frag # found chain 1sx5A in training set T0506 239 :VETLKQFEK 1sx5A 230 :YNNISEYRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38587 # 1qyrA.239.187 read from T0506.t04.many.frag # found chain 1qyrA in template set T0506 239 :VETLKQFEK 1qyrA 204 :VKDVRVLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38588 # 1uw4B.239.222 read from T0506.t04.many.frag # found chain 1uw4B in template set T0506 239 :VETLKQFEK 1uw4B 990 :CNSLEESIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38589 # 1hynP.239.300 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 239 :VETLKQFEK 1hynP 301 :AQSRGELLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38590 # 2a1rA.239.304 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 239 :VETLKQFEK 2a1rA 305 :PADLSEFKE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38591 # 1ltzA.239.243 read from T0506.t04.many.frag # found chain 1ltzA in training set T0506 239 :VETLKQFEK 1ltzA 244 :IDSFKQLFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38592 # 1wcwA.239.201 read from T0506.t04.many.frag # found chain 1wcwA in template set T0506 239 :VETLKQFEK 1wcwA 202 :AKDPKALRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38593 # 1qqfA.239.236 read from T0506.t04.many.frag # found chain 1qqfA in training set T0506 239 :VETLKQFEK 1qqfA 1246 :FDSVPPVVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38594 # 1musA.239.305 read from T0506.t04.many.frag # found chain 1musA in template set T0506 239 :VETLKQFEK 1musA 306 :VESLAQALR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38595 # 1q6zA.239.496 read from T0506.t04.many.frag # found chain 1q6zA in training set T0506 239 :VETLKQFEK 1q6zA 497 :ADNLEQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38596 # 1oqvA.239.52 read from T0506.t04.many.frag # found chain 1oqvA in training set T0506 239 :VETLKQFEK 1oqvA 60 :TADATAASK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38597 1k0fA expands to /projects/compbio/data/pdb/1k0f.pdb.gz 1k0fA:# 1k0fA.239.221 read from T0506.t04.many.frag # adding 1k0fA to template set # found chain 1k0fA in template set T0506 239 :VETLKQFEK 1k0fA 253 :HKNVEALRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38598 # 3bamA.239.113 read from T0506.t04.many.frag # found chain 3bamA in training set T0506 239 :VETLKQFEK 3bamA 114 :TGNISSAHR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38599 # 1nar.240.199 read from T0506.t04.many.frag # found chain 1nar in training set T0506 240 :ETLKQFEKA 1nar 200 :STDDAFVEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38600 # 1sflA.240.138 read from T0506.t04.many.frag # found chain 1sflA in template set Warning: unaligning (T0506)E240 (1sflA)P139 because P (beta_P) conformation "forbidden" or filtered. T0506 241 :TLKQFEKA 1sflA 140 :PLDELQFI Number of specific fragments extracted= 1 number of extra gaps= 1 total=38601 # 1ytlA.240.157 read from T0506.t04.many.frag # found chain 1ytlA in training set T0506 240 :ETLKQFEKA 1ytlA 158 :KKEEDYLKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38602 # 1ta8A.240.261 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 240 :ETLKQFEKA 1ta8A 262 :QSIDEVWAY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38603 # 1ub0A.240.149 read from T0506.t04.many.frag # found chain 1ub0A in template set T0506 240 :ETLKQFEKA 1ub0A 150 :RTLKEAEEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38604 # 2bg5A.240.306 read from T0506.t04.many.frag # found chain 2bg5A in template set T0506 240 :ETLKQFEKA 2bg5A 556 :SEAREIEKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38605 # 1hynP.240.301 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 240 :ETLKQFEKA 1hynP 302 :QSRGELLHS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38606 # 1w8sA.240.207 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 240 :ETLKQFEKA 1w8sA 208 :KTEEDFLKQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38607 # 1tvlA.240.278 read from T0506.t04.many.frag # found chain 1tvlA in template set T0506 240 :ETLKQFEKA 1tvlA 277 :DTEEEAEKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38608 # 1tf0B.240.35 read from T0506.t04.many.frag # found chain 1tf0B in template set Warning: unaligning (T0506)E240 (1tf0B)K36 because T (delta_L) conformation "forbidden" or filtered. T0506 241 :TLKQFEKA 1tf0B 37 :TVEEVNAL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38609 # 1rp4A.240.175 read from T0506.t04.many.frag # found chain 1rp4A in template set T0506 240 :ETLKQFEKA 1rp4A 214 :TGESLAKDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38610 # 1uocA.240.180 read from T0506.t04.many.frag # found chain 1uocA in template set T0506 240 :ETLKQFEKA 1uocA 181 :NNKEDFEWW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38611 # 1oqvA.240.53 read from T0506.t04.many.frag # found chain 1oqvA in training set T0506 240 :ETLKQFEKA 1oqvA 61 :ADATAASKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38612 # 1w2yA.240.212 read from T0506.t04.many.frag # found chain 1w2yA in training set T0506 240 :ETLKQFEKA 1w2yA 213 :LDFDTIYKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38613 # 3bamA.240.114 read from T0506.t04.many.frag # found chain 3bamA in training set T0506 240 :ETLKQFEKA 3bamA 115 :GNISSAHRS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38614 # 1pb7A.240.258 read from T0506.t04.many.frag # found chain 1pb7A in training set T0506 240 :ETLKQFEKA 1pb7A 259 :PWKQNVSLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38615 # 1zvdA.240.357 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 240 :ETLKQFEKA 1zvdA 726 :ESYEKLYEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38616 # 1u02A.240.209 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 240 :ETLKQFEKA 1u02A 210 :ADYIEMRKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38617 # 1uw4B.240.223 read from T0506.t04.many.frag # found chain 1uw4B in template set T0506 240 :ETLKQFEKA 1uw4B 991 :NSLEESIRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38618 # 1f3vA.240.129 read from T0506.t04.many.frag # found chain 1f3vA in template set T0506 240 :ETLKQFEKA 1f3vA 130 :ADEERCLSC Number of specific fragments extracted= 1 number of extra gaps= 0 total=38619 # 2bfwA.240.164 read from T0506.t04.many.frag # found chain 2bfwA in template set Warning: unaligning (T0506)T241 (2bfwA)D379 because D (zeta) conformation "forbidden" or filtered. T0506 240 :E 2bfwA 378 :G T0506 242 :LKQFEKA 2bfwA 380 :PGELANA Number of specific fragments extracted= 2 number of extra gaps= 1 total=38621 # 1q6zA.240.497 read from T0506.t04.many.frag # found chain 1q6zA in training set T0506 240 :ETLKQFEKA 1q6zA 498 :DNLEQLKGS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38622 1ae9A expands to /projects/compbio/data/pdb/1ae9.pdb.gz 1ae9A:# 1ae9A.240.103 read from T0506.t04.many.frag # adding 1ae9A to template set # found chain 1ae9A in template set T0506 240 :ETLKQFEKA 1ae9A 280 :LSSGTVSRY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38623 2d00A expands to /projects/compbio/data/pdb/2d00.pdb.gz 2d00A:# 2d00A.240.28 read from T0506.t04.many.frag # adding 2d00A to template set # found chain 2d00A in template set Warning: unaligning (T0506)T241 (2d00A)S30 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :E 2d00A 29 :S T0506 242 :LKQFEKA 2d00A 31 :AEEAQSL Number of specific fragments extracted= 2 number of extra gaps= 1 total=38625 # 1v77A.240.175 read from T0506.t04.many.frag # found chain 1v77A in training set T0506 240 :ETLKQFEKA 1v77A 176 :RYPRDLISL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38626 # 1vqoP.240.132 read from T0506.t04.many.frag # found chain 1vqoP in template set Warning: unaligning (T0506)T241 (1vqoP)S133 because Y (epsilon') conformation "forbidden" or filtered. T0506 240 :E 1vqoP 132 :D T0506 242 :LKQFEKA 1vqoP 134 :VADLERY Number of specific fragments extracted= 2 number of extra gaps= 1 total=38628 # 2f6sA.240.180 read from T0506.t04.many.frag # found chain 2f6sA in template set T0506 240 :ETLKQFEKA 2f6sA 159 :NDPLTLIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38629 1j1tA expands to /projects/compbio/data/pdb/1j1t.pdb.gz 1j1tA:# 1j1tA.240.201 read from T0506.t04.many.frag # adding 1j1tA to template set # found chain 1j1tA in template set T0506 240 :ETLKQFEKA 1j1tA 202 :GNSNSFKNC Number of specific fragments extracted= 1 number of extra gaps= 0 total=38630 # 1z72A.240.198 read from T0506.t04.many.frag # found chain 1z72A in template set T0506 240 :ETLKQFEKA 1z72A 196 :EDLTELQQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38631 # 1qyrA.240.188 read from T0506.t04.many.frag # found chain 1qyrA in template set T0506 240 :ETLKQFEKA 1qyrA 205 :KDVRVLSRI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38632 # 1nar.241.200 read from T0506.t04.many.frag # found chain 1nar in training set T0506 241 :TLKQFEKAL 1nar 201 :TDDAFVEIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38633 # 1sflA.241.139 read from T0506.t04.many.frag # found chain 1sflA in template set T0506 241 :TLKQFEKAL 1sflA 140 :PLDELQFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38634 # 1ta8A.241.262 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 241 :TLKQFEKAL 1ta8A 263 :SIDEVWAYI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38635 # 1ytlA.241.158 read from T0506.t04.many.frag # found chain 1ytlA in training set T0506 241 :TLKQFEKAL 1ytlA 159 :KEEDYLKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38636 # 1ub0A.241.150 read from T0506.t04.many.frag # found chain 1ub0A in template set T0506 241 :TLKQFEKAL 1ub0A 151 :TLKEAEEAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38637 # 1hynP.241.302 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 241 :TLKQFEKAL 1hynP 303 :SRGELLHSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38638 # 2bg5A.241.307 read from T0506.t04.many.frag # found chain 2bg5A in template set T0506 241 :TLKQFEKAL 2bg5A 557 :EAREIEKMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38639 # 1w8sA.241.208 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 241 :TLKQFEKAL 1w8sA 209 :TEEDFLKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38640 # 1uocA.241.181 read from T0506.t04.many.frag # found chain 1uocA in template set Warning: unaligning (T0506)T241 (1uocA)N182 because Y (epsilon') conformation "forbidden" or filtered. T0506 242 :LKQFEKAL 1uocA 183 :KEDFEWWV Number of specific fragments extracted= 1 number of extra gaps= 1 total=38641 # 1oqvA.241.54 read from T0506.t04.many.frag # found chain 1oqvA in training set T0506 241 :TLKQFEKAL 1oqvA 62 :DATAASKLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38642 # 1w2yA.241.213 read from T0506.t04.many.frag # found chain 1w2yA in training set T0506 241 :TLKQFEKAL 1w2yA 214 :DFDTIYKKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38643 # 1zvdA.241.358 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 241 :TLKQFEKAL 1zvdA 727 :SYEKLYEKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38644 # 1rp4A.241.176 read from T0506.t04.many.frag # found chain 1rp4A in template set T0506 241 :TLKQFEKAL 1rp4A 215 :GESLAKDAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38645 # 1u02A.241.210 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 241 :TLKQFEKAL 1u02A 211 :DYIEMRKIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38646 # 2b1eA.241.550 read from T0506.t04.many.frag # found chain 2b1eA in template set T0506 241 :TLKQFEKAL 2b1eA 610 :TPDELTTVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38647 # 1v77A.241.176 read from T0506.t04.many.frag # found chain 1v77A in training set T0506 241 :TLKQFEKAL 1v77A 177 :YPRDLISLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38648 # 2d00A.241.29 read from T0506.t04.many.frag # found chain 2d00A in template set Warning: unaligning (T0506)T241 (2d00A)S30 because Y (epsilon') conformation "forbidden" or filtered. T0506 242 :LKQFEKAL 2d00A 31 :AEEAQSLL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38649 # 1j1tA.241.202 read from T0506.t04.many.frag # found chain 1j1tA in template set T0506 241 :TLKQFEKAL 1j1tA 203 :NSNSFKNCF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38650 # 1ae9A.241.104 read from T0506.t04.many.frag # found chain 1ae9A in template set T0506 241 :TLKQFEKAL 1ae9A 281 :SSGTVSRYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38651 2tpt expands to /projects/compbio/data/pdb/2tpt.pdb.gz 2tpt:Warning: there is no chain 2tpt will retry with 2tptA # 2tpt.241.291 read from T0506.t04.many.frag # adding 2tpt to template set # found chain 2tpt in template set T0506 241 :TLKQFEKAL 2tpt 292 :DDAEARAKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38652 # 1q6zA.241.498 read from T0506.t04.many.frag # found chain 1q6zA in training set Warning: unaligning (T0506)T241 (1q6zA)N499 because Y (epsilon') conformation "forbidden" or filtered. T0506 242 :LKQFEKAL 1q6zA 500 :LEQLKGSL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38653 # 1tvlA.241.279 read from T0506.t04.many.frag # found chain 1tvlA in template set T0506 241 :TLKQFEKAL 1tvlA 278 :TEEEAEKKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38654 # 2f1rA.241.147 read from T0506.t04.many.frag # found chain 2f1rA in template set T0506 241 :TLKQFEKAL 2f1rA 148 :EVERIAEFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38655 # 1pb7A.241.259 read from T0506.t04.many.frag # found chain 1pb7A in training set T0506 241 :TLKQFEKAL 1pb7A 260 :WKQNVSLSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38656 # 1h05A.241.53 read from T0506.t04.many.frag # found chain 1h05A in training set T0506 241 :TLKQFEKAL 1h05A 54 :SEAQLLDWI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38657 # 2a1rA.241.306 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 241 :TLKQFEKAL 2a1rA 307 :DLSEFKEMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38658 # 1wddA.241.180 read from T0506.t04.many.frag # found chain 1wddA in training set T0506 241 :TLKQFEKAL 1wddA 181 :SAKNYGRAC Number of specific fragments extracted= 1 number of extra gaps= 0 total=38659 # 1yhtA.241.190 read from T0506.t04.many.frag # found chain 1yhtA in template set T0506 241 :TLKQFEKAL 1yhtA 191 :SNHEFITYA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38660 # 2cxaA.241.219 read from T0506.t04.many.frag # found chain 2cxaA in template set T0506 241 :TLKQFEKAL 2cxaA 203 :PRRDYLNYL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38661 # 1wcwA.241.203 read from T0506.t04.many.frag # found chain 1wcwA in template set T0506 241 :TLKQFEKAL 1wcwA 204 :DPKALREAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38662 # 1sflA.242.140 read from T0506.t04.many.frag # found chain 1sflA in template set T0506 242 :LKQFEKALA 1sflA 141 :LDELQFIFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38663 # 1ub0A.242.151 read from T0506.t04.many.frag # found chain 1ub0A in template set T0506 242 :LKQFEKALA 1ub0A 152 :LKEAEEAAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38664 # 1nar.242.201 read from T0506.t04.many.frag # found chain 1nar in training set T0506 242 :LKQFEKALA 1nar 202 :DDAFVEIFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38665 # 1ta8A.242.263 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 242 :LKQFEKALA 1ta8A 264 :IDEVWAYIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38666 # 1ytlA.242.159 read from T0506.t04.many.frag # found chain 1ytlA in training set T0506 242 :LKQFEKALA 1ytlA 160 :EEDYLKLLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38667 # 1hynP.242.303 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 242 :LKQFEKALA 1hynP 304 :RGELLHSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38668 # 1uocA.242.182 read from T0506.t04.many.frag # found chain 1uocA in template set T0506 242 :LKQFEKALA 1uocA 183 :KEDFEWWVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38669 # 1w8sA.242.209 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 242 :LKQFEKALA 1w8sA 210 :EEDFLKQVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38670 # 2b1eA.242.551 read from T0506.t04.many.frag # found chain 2b1eA in template set T0506 242 :LKQFEKALA 2b1eA 611 :PDELTTVLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38671 # 1w2yA.242.214 read from T0506.t04.many.frag # found chain 1w2yA in training set T0506 242 :LKQFEKALA 1w2yA 215 :FDTIYKKLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38672 # 2cxaA.242.220 read from T0506.t04.many.frag # found chain 2cxaA in template set T0506 242 :LKQFEKALA 2cxaA 204 :RRDYLNYLN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38673 # 1rp4A.242.177 read from T0506.t04.many.frag # found chain 1rp4A in template set T0506 242 :LKQFEKALA 1rp4A 216 :ESLAKDAFY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38674 # 2bg5A.242.308 read from T0506.t04.many.frag # found chain 2bg5A in template set T0506 242 :LKQFEKALA 2bg5A 558 :AREIEKMMK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38675 # 1u02A.242.211 read from T0506.t04.many.frag # found chain 1u02A in template set T0506 242 :LKQFEKALA 1u02A 212 :YIEMRKILK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38676 # 1zvdA.242.359 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 242 :LKQFEKALA 1zvdA 728 :YEKLYEKLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38677 # 1oqvA.242.55 read from T0506.t04.many.frag # found chain 1oqvA in training set T0506 242 :LKQFEKALA 1oqvA 63 :ATAASKLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38678 # 2tpt.242.292 read from T0506.t04.many.frag # found chain 2tpt in template set T0506 242 :LKQFEKALA 2tpt 293 :DAEARAKLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38679 # 1v77A.242.177 read from T0506.t04.many.frag # found chain 1v77A in training set T0506 242 :LKQFEKALA 1v77A 178 :PRDLISLGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38680 # 2d00A.242.30 read from T0506.t04.many.frag # found chain 2d00A in template set T0506 242 :LKQFEKALA 2d00A 31 :AEEAQSLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38681 # 1tvlA.242.280 read from T0506.t04.many.frag # found chain 1tvlA in template set T0506 242 :LKQFEKALA 1tvlA 279 :EEEAEKKYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38682 # 2f1rA.242.148 read from T0506.t04.many.frag # found chain 2f1rA in template set T0506 242 :LKQFEKALA 2f1rA 149 :VERIAEFIL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38683 # 1h05A.242.54 read from T0506.t04.many.frag # found chain 1h05A in training set T0506 242 :LKQFEKALA 1h05A 55 :EAQLLDWIH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38684 # 2pth.242.179 read from T0506.t04.many.frag # found chain 2pth in training set T0506 242 :LKQFEKALA 2pth 180 :LTKATNRLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38685 # 1j1tA.242.203 read from T0506.t04.many.frag # found chain 1j1tA in template set T0506 242 :LKQFEKALA 1j1tA 204 :SNSFKNCFE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38686 # 1wddA.242.181 read from T0506.t04.many.frag # found chain 1wddA in training set T0506 242 :LKQFEKALA 1wddA 182 :AKNYGRACY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38687 # 1s4bP.242.272 read from T0506.t04.many.frag # found chain 1s4bP in template set T0506 242 :LKQFEKALA 1s4bP 288 :SQTVATFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38688 1nznA expands to /projects/compbio/data/pdb/1nzn.pdb.gz 1nznA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1nznA.242.89 read from T0506.t04.many.frag # adding 1nznA to template set # found chain 1nznA in template set T0506 242 :LKQFEKALA 1nznA 90 :YEKALKYVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38689 # 1ae9A.242.105 read from T0506.t04.many.frag # found chain 1ae9A in template set T0506 242 :LKQFEKALA 1ae9A 282 :SGTVSRYFM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38690 # 1yviA.242.71 read from T0506.t04.many.frag # found chain 1yviA in template set T0506 242 :LKQFEKALA 1yviA 72 :FDKVDAYVH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38691 # 2a1rA.242.307 read from T0506.t04.many.frag # found chain 2a1rA in template set T0506 242 :LKQFEKALA 2a1rA 308 :LSEFKEMTT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38692 # 1w2yA.243.215 read from T0506.t04.many.frag # found chain 1w2yA in training set T0506 243 :KQFEKALAQ 1w2yA 216 :DTIYKKLEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38693 # 1rp4A.243.178 read from T0506.t04.many.frag # found chain 1rp4A in template set T0506 243 :KQFEKALAQ 1rp4A 217 :SLAKDAFYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38694 # 2cxaA.243.221 read from T0506.t04.many.frag # found chain 2cxaA in template set T0506 243 :KQFEKALAQ 2cxaA 205 :RDYLNYLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38695 # 2tpt.243.293 read from T0506.t04.many.frag # found chain 2tpt in template set T0506 243 :KQFEKALAQ 2tpt 294 :AEARAKLQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38696 # 2b1eA.243.552 read from T0506.t04.many.frag # found chain 2b1eA in template set T0506 243 :KQFEKALAQ 2b1eA 612 :DELTTVLNQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38697 # 2f1rA.243.149 read from T0506.t04.many.frag # found chain 2f1rA in template set T0506 243 :KQFEKALAQ 2f1rA 150 :ERIAEFILS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38698 # 1ta8A.243.264 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 243 :KQFEKALAQ 1ta8A 265 :DEVWAYIEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38699 # 1nar.243.202 read from T0506.t04.many.frag # found chain 1nar in training set T0506 243 :KQFEKALAQ 1nar 203 :DAFVEIFKS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38700 # 1h05A.243.55 read from T0506.t04.many.frag # found chain 1h05A in training set T0506 243 :KQFEKALAQ 1h05A 56 :AQLLDWIHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38701 # 1ub0A.243.152 read from T0506.t04.many.frag # found chain 1ub0A in template set T0506 243 :KQFEKALAQ 1ub0A 153 :KEAEEAAKA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38702 # 1wddA.243.182 read from T0506.t04.many.frag # found chain 1wddA in training set T0506 243 :KQFEKALAQ 1wddA 183 :KNYGRACYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38703 # 1zvdA.243.360 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 243 :KQFEKALAQ 1zvdA 729 :EKLYEKLLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38704 # 1hynP.243.304 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 243 :KQFEKALAQ 1hynP 305 :GELLHSLEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38705 # 1zl0A.243.225 read from T0506.t04.many.frag # found chain 1zl0A in template set T0506 243 :KQFEKALAQ 1zl0A 224 :YRLERSLWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38706 # 1sflA.243.141 read from T0506.t04.many.frag # found chain 1sflA in template set T0506 243 :KQFEKALAQ 1sflA 142 :DELQFIFFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38707 # 1iv3A.243.109 read from T0506.t04.many.frag # found chain 1iv3A in training set T0506 243 :KQFEKALAQ 1iv3A 110 :KALVDSLSR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38708 # 2d00A.243.31 read from T0506.t04.many.frag # found chain 2d00A in template set T0506 243 :KQFEKALAQ 2d00A 32 :EEAQSLLET Number of specific fragments extracted= 1 number of extra gaps= 0 total=38709 # 2pth.243.180 read from T0506.t04.many.frag # found chain 2pth in training set T0506 243 :KQFEKALAQ 2pth 181 :TKATNRLHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38710 # 1dfmA.243.145 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 243 :KQFEKALAQ 1dfmA 146 :EQAQNQLNS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38711 # 1uocA.243.183 read from T0506.t04.many.frag # found chain 1uocA in template set T0506 243 :KQFEKALAQ 1uocA 184 :EDFEWWVHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38712 1kyqA expands to /projects/compbio/data/pdb/1kyq.pdb.gz 1kyqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 110, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 112, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 114, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 116, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 118, because occupancy 0.500 <= existing 0.500 in 1kyqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 811, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 813, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 815, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 817, because occupancy 0.500 <= existing 0.500 in 1kyqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 883, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 885, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 928, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 930, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 932, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 934, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 936, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1006, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1008, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1010, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1433, because occupancy 0.500 <= existing 0.500 in 1kyqA Skipped atom 1435, because occupancy 0.500 <= existing 0.500 in 1kyqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # 1kyqA.243.241 read from T0506.t04.many.frag # adding 1kyqA to template set # found chain 1kyqA in template set T0506 243 :KQFEKALAQ 1kyqA 242 :KRLLDLFKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38713 # 2bo4A.243.360 read from T0506.t04.many.frag # found chain 2bo4A in template set T0506 243 :KQFEKALAQ 2bo4A 361 :DYAQQYLYR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38714 # 1gw5S.243.128 read from T0506.t04.many.frag # found chain 1gw5S in template set T0506 243 :KQFEKALAQ 1gw5S 129 :TKVLKQLLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38715 # 1g8mA.243.569 read from T0506.t04.many.frag # found chain 1g8mA in training set T0506 243 :KQFEKALAQ 1g8mA 570 :EVVIEACNE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38716 # 2bg5A.243.309 read from T0506.t04.many.frag # found chain 2bg5A in template set T0506 243 :KQFEKALAQ 2bg5A 559 :REIEKMMKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38717 # 1ae9A.243.106 read from T0506.t04.many.frag # found chain 1ae9A in template set T0506 243 :KQFEKALAQ 1ae9A 283 :GTVSRYFMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38718 # 1u7lA.243.337 read from T0506.t04.many.frag # found chain 1u7lA in training set T0506 243 :KQFEKALAQ 1u7lA 338 :SKCKSELID Number of specific fragments extracted= 1 number of extra gaps= 0 total=38719 1cjaA expands to /projects/compbio/data/pdb/1cja.pdb.gz 1cjaA:# 1cjaA.243.244 read from T0506.t04.many.frag # adding 1cjaA to template set # found chain 1cjaA in template set T0506 243 :KQFEKALAQ 1cjaA 246 :ERVRELLRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38720 # 2bfdB.243.332 read from T0506.t04.many.frag # found chain 2bfdB in template set T0506 243 :KQFEKALAQ 2bfdB 330 :WKCYDALRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38721 # 1e2kA.243.288 read from T0506.t04.many.frag # found chain 1e2kA in training set T0506 243 :KQFEKALAQ 1e2kA 334 :AGCRDALLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38722 # 2cxaA.244.222 read from T0506.t04.many.frag # found chain 2cxaA in template set T0506 244 :QFEKALAQL 2cxaA 206 :DYLNYLNQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38723 # 1rp4A.244.179 read from T0506.t04.many.frag # found chain 1rp4A in template set T0506 244 :QFEKALAQL 1rp4A 218 :LAKDAFYRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38724 # 1w2yA.244.216 read from T0506.t04.many.frag # found chain 1w2yA in training set T0506 244 :QFEKALAQL 1w2yA 217 :TIYKKLEEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=38725 # 1sflA.244.142 read from T0506.t04.many.frag # found chain 1sflA in template set T0506 244 :QFEKALAQL 1sflA 143 :ELQFIFFKM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38726 # 1hynP.244.305 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 244 :QFEKALAQL 1hynP 306 :ELLHSLEGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38727 # 1yviA.244.73 read from T0506.t04.many.frag # found chain 1yviA in template set T0506 244 :QFEKALAQL 1yviA 74 :KVDAYVHQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38728 # 2b1eA.244.553 read from T0506.t04.many.frag # found chain 2b1eA in template set T0506 244 :QFEKALAQL 2b1eA 613 :ELTTVLNQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38729 # 2tpt.244.294 read from T0506.t04.many.frag # found chain 2tpt in template set T0506 244 :QFEKALAQL 2tpt 295 :EARAKLQAV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38730 # 2f1rA.244.150 read from T0506.t04.many.frag # found chain 2f1rA in template set T0506 244 :QFEKALAQL 2f1rA 151 :RIAEFILSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38731 # 1h05A.244.56 read from T0506.t04.many.frag # found chain 1h05A in training set T0506 244 :QFEKALAQL 1h05A 57 :QLLDWIHQA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38732 # 2pth.244.181 read from T0506.t04.many.frag # found chain 2pth in training set T0506 244 :QFEKALAQL 2pth 182 :KATNRLHAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38733 # 1zl0A.244.226 read from T0506.t04.many.frag # found chain 1zl0A in template set T0506 244 :QFEKALAQL 1zl0A 225 :RLERSLWQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38734 # 1zvdA.244.361 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 244 :QFEKALAQL 1zvdA 730 :KLYEKLLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38735 1colA expands to /projects/compbio/data/pdb/1col.pdb.gz 1colA:# 1colA.244.57 read from T0506.t04.many.frag # adding 1colA to template set # found chain 1colA in template set T0506 244 :QFEKALAQL 1colA 58 :DAMASLNKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38736 # 1m4zA.244.205 read from T0506.t04.many.frag # found chain 1m4zA in template set T0506 244 :QFEKALAQL 1m4zA 203 :EAQEYLKDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38737 # 1nar.244.203 read from T0506.t04.many.frag # found chain 1nar in training set T0506 244 :QFEKALAQL 1nar 204 :AFVEIFKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38738 # 1wddA.244.183 read from T0506.t04.many.frag # found chain 1wddA in training set T0506 244 :QFEKALAQL 1wddA 184 :NYGRACYEC Number of specific fragments extracted= 1 number of extra gaps= 0 total=38739 # 1dfmA.244.146 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 244 :QFEKALAQL 1dfmA 147 :QAQNQLNSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38740 # 1iv3A.244.110 read from T0506.t04.many.frag # found chain 1iv3A in training set T0506 244 :QFEKALAQL 1iv3A 111 :ALVDSLSRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38741 # 1u7lA.244.338 read from T0506.t04.many.frag # found chain 1u7lA in training set T0506 244 :QFEKALAQL 1u7lA 339 :KCKSELIDA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38742 # 2bo4A.244.361 read from T0506.t04.many.frag # found chain 2bo4A in template set T0506 244 :QFEKALAQL 2bo4A 362 :YAQQYLYRM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38743 # 1ub0A.244.153 read from T0506.t04.many.frag # found chain 1ub0A in template set T0506 244 :QFEKALAQL 1ub0A 154 :EAEEAAKAL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38744 # 1e2kA.244.289 read from T0506.t04.many.frag # found chain 1e2kA in training set T0506 244 :QFEKALAQL 1e2kA 335 :GCRDALLQL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38745 # 1uocA.244.184 read from T0506.t04.many.frag # found chain 1uocA in template set T0506 244 :QFEKALAQL 1uocA 185 :DFEWWVHQY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38746 # 1kyqA.244.242 read from T0506.t04.many.frag # found chain 1kyqA in template set T0506 244 :QFEKALAQL 1kyqA 243 :RLLDLFKVM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38747 # 1ta8A.244.265 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 244 :QFEKALAQL 1ta8A 266 :EVWAYIEEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38748 # 1gw5S.244.129 read from T0506.t04.many.frag # found chain 1gw5S in template set T0506 244 :QFEKALAQL 1gw5S 130 :KVLKQLLML Number of specific fragments extracted= 1 number of extra gaps= 0 total=38749 # 1u9tA.244.338 read from T0506.t04.many.frag # found chain 1u9tA in template set T0506 244 :QFEKALAQL 1u9tA 327 :QWRKQIASL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38750 # 1w8sA.244.211 read from T0506.t04.many.frag # found chain 1w8sA in template set T0506 244 :QFEKALAQL 1w8sA 212 :DFLKQVEGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38751 # 1g8mA.244.570 read from T0506.t04.many.frag # found chain 1g8mA in training set T0506 244 :QFEKALAQL 1g8mA 571 :VVIEACNEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38752 # 2cxaA.245.223 read from T0506.t04.many.frag # found chain 2cxaA in template set T0506 245 :FEKALAQLL 2cxaA 207 :YLNYLNQMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38753 # 1w2yA.245.217 read from T0506.t04.many.frag # found chain 1w2yA in training set T0506 245 :FEKALAQLL 1w2yA 218 :IYKKLEECY Number of specific fragments extracted= 1 number of extra gaps= 0 total=38754 # 2b1eA.245.554 read from T0506.t04.many.frag # found chain 2b1eA in template set T0506 245 :FEKALAQLL 2b1eA 614 :LTTVLNQLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38755 # 1yviA.245.74 read from T0506.t04.many.frag # found chain 1yviA in template set T0506 245 :FEKALAQLL 1yviA 75 :VDAYVHQLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38756 # 1sflA.245.143 read from T0506.t04.many.frag # found chain 1sflA in template set T0506 245 :FEKALAQLL 1sflA 144 :LQFIFFKMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38757 # 1rp4A.245.180 read from T0506.t04.many.frag # found chain 1rp4A in template set T0506 245 :FEKALAQLL 1rp4A 219 :AKDAFYRLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=38758 # 1zl0A.245.227 read from T0506.t04.many.frag # found chain 1zl0A in template set T0506 245 :FEKALAQLL 1zl0A 226 :LERSLWQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38759 # 2tpt.245.295 read from T0506.t04.many.frag # found chain 2tpt in template set T0506 245 :FEKALAQLL 2tpt 296 :ARAKLQAVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38760 # 1dfmA.245.147 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 245 :FEKALAQLL 1dfmA 148 :AQNQLNSLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38761 # 2f1rA.245.151 read from T0506.t04.many.frag # found chain 2f1rA in template set T0506 245 :FEKALAQLL 2f1rA 152 :IAEFILSLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38762 # 1hynP.245.306 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 245 :FEKALAQLL 1hynP 307 :LLHSLEGFL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38763 # 1h05A.245.57 read from T0506.t04.many.frag # found chain 1h05A in training set T0506 245 :FEKALAQLL 1h05A 58 :LLDWIHQAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38764 # 2bfdB.245.334 read from T0506.t04.many.frag # found chain 2bfdB in template set T0506 245 :FEKALAQLL 2bfdB 332 :CYDALRKMI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38765 # 1nar.245.204 read from T0506.t04.many.frag # found chain 1nar in training set T0506 245 :FEKALAQLL 1nar 205 :FVEIFKSLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38766 # 1m4zA.245.206 read from T0506.t04.many.frag # found chain 1m4zA in template set T0506 245 :FEKALAQLL 1m4zA 204 :AQEYLKDLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38767 # 1kr4A.245.86 read from T0506.t04.many.frag # found chain 1kr4A in training set T0506 245 :FEKALAQLL 1kr4A 71 :LYEELRKLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38768 # 1colA.245.58 read from T0506.t04.many.frag # found chain 1colA in template set T0506 245 :FEKALAQLL 1colA 59 :AMASLNKIT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38769 # 1iv3A.245.111 read from T0506.t04.many.frag # found chain 1iv3A in training set T0506 245 :FEKALAQLL 1iv3A 112 :LVDSLSRLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=38770 # 1zvdA.245.362 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 245 :FEKALAQLL 1zvdA 731 :LYEKLLTAI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38771 # 1e2kA.245.290 read from T0506.t04.many.frag # found chain 1e2kA in training set T0506 245 :FEKALAQLL 1e2kA 336 :CRDALLQLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38772 # 2bg5A.245.311 read from T0506.t04.many.frag # found chain 2bg5A in template set T0506 245 :FEKALAQLL 2bg5A 561 :IEKMMKDVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38773 # 2bo4A.245.362 read from T0506.t04.many.frag # found chain 2bo4A in template set T0506 245 :FEKALAQLL 2bo4A 363 :AQQYLYRML Number of specific fragments extracted= 1 number of extra gaps= 0 total=38774 # 2pth.245.182 read from T0506.t04.many.frag # found chain 2pth in training set Warning: unaligning (T0506)L253 (2pth)K191 because T (delta_L) conformation "forbidden" or filtered. T0506 245 :FEKALAQL 2pth 183 :ATNRLHAF Number of specific fragments extracted= 1 number of extra gaps= 1 total=38775 # 1kyqA.245.243 read from T0506.t04.many.frag # found chain 1kyqA in template set T0506 245 :FEKALAQLL 1kyqA 244 :LLDLFKVMF Number of specific fragments extracted= 1 number of extra gaps= 0 total=38776 # 1vgjA.245.139 read from T0506.t04.many.frag # found chain 1vgjA in template set T0506 245 :FEKALAQLL 1vgjA 140 :LTMKLKELA Number of specific fragments extracted= 1 number of extra gaps= 0 total=38777 # 1ta8A.245.266 read from T0506.t04.many.frag # found chain 1ta8A in training set T0506 245 :FEKALAQLL 1ta8A 267 :VWAYIEEYH Number of specific fragments extracted= 1 number of extra gaps= 0 total=38778 2d2mC expands to /projects/compbio/data/pdb/2d2m.pdb.gz 2d2mC:# 2d2mC.245.86 read from T0506.t04.many.frag # adding 2d2mC to template set # found chain 2d2mC in template set T0506 245 :FEKALAQLL 2d2mC 87 :LNEQLAHLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38779 # 1tv8A.245.300 read from T0506.t04.many.frag # found chain 1tv8A in template set T0506 245 :FEKALAQLL 1tv8A 301 :LKEQFKALW Number of specific fragments extracted= 1 number of extra gaps= 0 total=38780 # 1p3dA.245.418 read from T0506.t04.many.frag # found chain 1p3dA in training set Warning: unaligning (T0506)L253 (1p3dA)G427 because T (delta_L) conformation "forbidden" or filtered. T0506 245 :FEKALAQL 1p3dA 419 :LCRSIRNL Number of specific fragments extracted= 1 number of extra gaps= 1 total=38781 # 1u9tA.245.339 read from T0506.t04.many.frag # found chain 1u9tA in template set T0506 245 :FEKALAQLL 1u9tA 328 :WRKQIASLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=38782 # 2cxaA.246.224 read from T0506.t04.many.frag # found chain 2cxaA in template set T0506 246 :EKALAQLLK 2cxaA 208 :LNYLNQMRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38783 # 1w2yA.246.218 read from T0506.t04.many.frag # found chain 1w2yA in training set T0506 246 :EKALAQLLK 1w2yA 219 :YKKLEECYK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38784 # 1m4zA.246.207 read from T0506.t04.many.frag # found chain 1m4zA in template set T0506 246 :EKALAQLLK 1m4zA 205 :QEYLKDLTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=38785 # 1sflA.246.144 read from T0506.t04.many.frag # found chain 1sflA in template set T0506 246 :EKALAQLLK 1sflA 145 :QFIFFKMQK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38786 # 1yviA.246.75 read from T0506.t04.many.frag # found chain 1yviA in template set T0506 246 :EKALAQLLK 1yviA 76 :DAYVHQLKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38787 # 2pth.246.183 read from T0506.t04.many.frag # found chain 2pth in training set Warning: unaligning (T0506)L253 (2pth)K191 because T (delta_L) conformation "forbidden" or filtered. T0506 246 :EKALAQL 2pth 184 :TNRLHAF T0506 254 :K 2pth 192 :A Number of specific fragments extracted= 2 number of extra gaps= 1 total=38789 # 2f1rA.246.152 read from T0506.t04.many.frag # found chain 2f1rA in template set T0506 246 :EKALAQLLK 2f1rA 153 :AEFILSLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38790 # 1zl0A.246.228 read from T0506.t04.many.frag # found chain 1zl0A in template set T0506 246 :EKALAQLLK 1zl0A 227 :ERSLWQLLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38791 # 2b1eA.246.555 read from T0506.t04.many.frag # found chain 2b1eA in template set T0506 246 :EKALAQLLK 2b1eA 615 :TTVLNQLVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38792 # 1dfmA.246.148 read from T0506.t04.many.frag # found chain 1dfmA in training set T0506 246 :EKALAQLLK 1dfmA 149 :QNQLNSLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38793 # 2tpt.246.296 read from T0506.t04.many.frag # found chain 2tpt in template set T0506 246 :EKALAQLLK 2tpt 297 :RAKLQAVLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38794 # 1u9tA.246.340 read from T0506.t04.many.frag # found chain 1u9tA in template set T0506 246 :EKALAQLLK 1u9tA 329 :RKQIASLIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38795 # 1iv3A.246.112 read from T0506.t04.many.frag # found chain 1iv3A in training set T0506 246 :EKALAQLLK 1iv3A 113 :VDSLSRLMR Number of specific fragments extracted= 1 number of extra gaps= 0 total=38796 # 2bfdB.246.335 read from T0506.t04.many.frag # found chain 2bfdB in template set T0506 246 :EKALAQLLK 2bfdB 333 :YDALRKMIN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38797 # 1hynP.246.307 read from T0506.t04.many.frag # found chain 1hynP in template set T0506 246 :EKALAQLLK 1hynP 308 :LHSLEGFLD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38798 # 1h05A.246.58 read from T0506.t04.many.frag # found chain 1h05A in training set T0506 246 :EKALAQLLK 1h05A 59 :LDWIHQAAD Number of specific fragments extracted= 1 number of extra gaps= 0 total=38799 # 1nar.246.205 read from T0506.t04.many.frag # found chain 1nar in training set T0506 246 :EKALAQLLK 1nar 206 :VEIFKSLEK Number of specific fragments extracted= 1 number of extra gaps= 0 total=38800 # 1ry9A.246.127 read from T0506.t04.many.frag # found chain 1ry9A in template set T0506 246 :EKALAQLLK 1ry9A 116 :AEILHEFYQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38801 # 1rp4A.246.181 read from T0506.t04.many.frag # found chain 1rp4A in template set T0506 246 :EKALAQLLK 1rp4A 220 :KDAFYRLVS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38802 # 1jyoA.246.106 read from T0506.t04.many.frag # found chain 1jyoA in template set T0506 246 :EKALAQLLK 1jyoA 107 :ISQLESFVN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38803 # 1zvdA.246.363 read from T0506.t04.many.frag # found chain 1zvdA in template set T0506 246 :EKALAQLLK 1zvdA 732 :YEKLLTAIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=38804 # 1vgjA.246.140 read from T0506.t04.many.frag # found chain 1vgjA in template set T0506 246 :EKALAQLLK 1vgjA 141 :TMKLKELAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=38805 # 2bo4A.246.363 read from T0506.t04.many.frag # found chain 2bo4A in template set T0506 246 :EKALAQLLK 2bo4A 364 :QQYLYRMLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=38806 # 1gsoA.246.399 read from T0506.t04.many.frag # found chain 1gsoA in training set T0506 246 :EKALAQLLK 1gsoA 398 :QKRAYALMT Number of specific fragments extracted= 1 number of extra gaps= 0 total=38807 # 1colA.246.59 read from T0506.t04.many.frag # found chain 1colA in template set Warning: unaligning (T0506)K254 (1colA)A68 because G (3-10) conformation "forbidden" or filtered. T0506 246 :EKALAQLL 1colA 60 :MASLNKIT Number of specific fragments extracted= 1 number of extra gaps= 1 total=38808 # 1kyqA.246.244 read from T0506.t04.many.frag # found chain 1kyqA in template set T0506 246 :EKALAQLLK 1kyqA 245 :LDLFKVMFQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=38809 # 1kr4A.246.87 read from T0506.t04.many.frag # found chain 1kr4A in training set T0506 246 :EKALAQLLK 1kr4A 72 :YEELRKLHP Number of specific fragments extracted= 1 number of extra gaps= 0 total=38810 # 2f2gA.246.115 read from T0506.t04.many.frag # found chain 2f2gA in template set T0506 246 :EKALAQLLK 2f2gA 116 :GRFLEDLMS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38811 # 1lvaA.246.204 read from T0506.t04.many.frag # found chain 1lvaA in template set T0506 246 :EKALAQLLK 1lvaA 581 :REVIKNLAS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38812 # 1e2kA.246.291 read from T0506.t04.many.frag # found chain 1e2kA in training set T0506 246 :EKALAQLLK 1e2kA 337 :RDALLQLTS Number of specific fragments extracted= 1 number of extra gaps= 0 total=38813 # command:# Prefix for output files set to # command:# Prefix for output files set to decoys/ # command:CPU_time= 1361.334 sec, elapsed time= 3489.627 sec. # command:# Setting HealPeptide to 0.300 # Setting JiggleSubtree to 0.300 # Setting JiggleSegment to 0.300 # Setting OptSubtree to 1.000 # Setting OptSegment to 1.000 # Setting OptAllSegments to 0.300 # Setting ShiftSubtree to 0.300 # Setting ShiftSegment to 0.300 # Setting TweakPhiSubtree to 0.300 # Setting TweakPhiSegment to 0.300 # Setting TweakPsiSubtree to 0.300 # Setting TweakPsiSegment to 0.300 # Setting TweakPsiPhiSubtree to 0.300 # Setting TweakPsiPhiSegment to 0.300 # Setting TweakHbondSubtree to 0.300 # Setting TweakHbondSegment to 0.300 # Setting TweakMultimer to 0.300 # Setting TweakPeptide to 0.300 # Setting OneRotamer to 1.000 # Setting ClashingRotamer to 1.000 # Setting ClusteredRotamer to 2.000 # Setting ReduceBreak to 5.000 # Setting CloseGap to 5.000 # Setting HealGap to 5.000 # Setting MoveGap to 5.000 # Setting ReduceConstraint to 5.000 # Setting ImproveSSBond to 0.000 # Setting InsertSSBond to 0.000 # Setting InsertAlignment to 1.000 # Setting InsertSpecificFragment to 20.000 # Setting InsertFragment to 5.000 # Setting TwoFragment to 5.000 # Setting CrossOver to 3.000 # Setting CrossAndInsert to 5.000 # Setting ReduceClash to 5.000 # Initial Method pseudocounts set to # HealPeptide 0.300 # JiggleSubtree 0.300 # JiggleSegment 0.300 # OptSubtree 1.000 # OptSegment 1.000 # OptAllSegments 0.300 # ShiftSubtree 0.300 # ShiftSegment 0.300 # TweakPhiSubtree 0.300 # TweakPhiSegment 0.300 # TweakPsiSubtree 0.300 # TweakPsiSegment 0.300 # TweakPsiPhiSubtree 0.300 # TweakPsiPhiSegment 0.300 # TweakHbondSubtree 0.300 # TweakHbondSegment 0.300 # TweakMultimer 0.300 # TweakPeptide 0.300 # FixOmega 0.300 # Backrub 0.300 # BigBackrub 0.300 # OneRotamer 1.000 # ClashingRotamer 1.000 # ClusteredRotamer 2.000 # ReduceBreak 5.000 # CloseGap 5.000 # HealGap 5.000 # MoveGap 5.000 # ReduceConstraint 5.000 # ImproveSSBond 0.000 # InsertSSBond 0.000 # InsertAlignment 1.000 # InsertSpecificFragment 20.000 # InsertFragment 5.000 # TwoFragment 5.000 # CrossOver 3.000 # CrossAndInsert 5.000 # ReduceClash 5.000 # command:# OptConform to optimize cost = # ( 15.000 * wet6.5(6.500, /log(length)) + 5.000 * near_backbone(9.650) + 5.000 * way_back(8.900) + 15.000 * dry5(5.000) + 20.000 * dry6.5(6.500) + 15.000 * dry8(8.000) + 5.000 * dry12(12.000) + 2.000 * phobic_fit + 5.000 * sidechain + 5.000 * n_ca_c + 10.000 * bad_peptide + 5.000 * bystroff + 20.000 * soft_clashes + 2.000 * backbone_clashes + 50.000 * break + 3.000 * pred_alpha2k + 3.000 * pred_alpha04 + 10.000 * constraints + 5.000 * hbond_geom + 10.000 * hbond_geom_backbone + 50.000 * hbond_geom_beta + 100.000 * hbond_geom_beta_pair + 0.500 * maybe_metal + 1.000 * maybe_ssbond ) # Will do 5 iterations of optimization # iteration 0 # filling pool to have 20 conformations # best score in initial pool out of 20: T0506.try1 at pool[9] 210.835 cost/residue, 277 clashes 0.250 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0506.try1 210.835 cost/residue, 277 clashes 0.250 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 10 = 0.00000 0.00000 ## CloseGap 0 0 1 / 4 = 0.25000 0.77040 ## HealGap 0 2 0 / 3 = 0.00000 0.00000 ## MoveGap 0 1 0 / 7 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 7 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 24 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 7 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 2 = 0.00000 0.00000 ## CrossOver 0 1 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 9 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 5 = 0.00000 0.00000 # generation 2: best score out of 20: T0506.try1-al7 209.91869 cost/residue, 319 clashes 0.18172 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 2 = 0.00000 0.00000 ## OptSegment 0 0 0 / 1 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 1 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## FixOmega 0 1 0 / 2 = 0.00000 0.00000 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 5 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 15 = 0.00000 0.00000 ## CloseGap 0 5 5 / 15 = 0.33333 1.07881 ## HealGap 0 2 0 / 7 = 0.00000 0.00000 ## MoveGap 0 2 0 / 16 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 17 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 43 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 11 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 11 = 0.00000 0.00000 ## CrossOver 0 1 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 11 = 0.00000 0.00000 # generation 3: best score out of 20: T0506.try1 207.56535 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 2 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 1 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## FixOmega 0 1 0 / 3 = 0.00000 0.00000 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 21 = 0.04762 0.01747 ## CloseGap 0 9 9 / 27 = 0.33333 1.08376 ## HealGap 0 3 0 / 16 = 0.00000 0.00000 ## MoveGap 0 2 0 / 24 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 19 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 70 = 0.00000 0.00000 ## InsertFragment 0 2 0 / 14 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 15 = 0.00000 0.00000 ## CrossOver 0 2 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 1 2 1 / 24 = 0.04167 0.01472 ## ReduceClash 0 0 0 / 16 = 0.00000 0.00000 # generation 4: best score out of 20: T0506.try1 206.74936 cost/residue, 250 clashes 0.19827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 1 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 3 = 0.33333 0.03924 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 2 = 0.00000 0.00000 ## FixOmega 0 1 0 / 3 = 0.00000 0.00000 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 9 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 31 = 0.03226 0.01183 ## CloseGap 0 11 10 / 42 = 0.23810 0.77456 ## HealGap 0 3 0 / 24 = 0.00000 0.00000 ## MoveGap 0 2 0 / 28 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 24 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 2 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 1 / 85 = 0.01176 0.02489 ## InsertFragment 0 2 0 / 21 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 19 = 0.00000 0.00000 ## CrossOver 0 4 0 / 13 = 0.00000 0.00000 ## CrossAndInsert 1 3 1 / 33 = 0.03030 0.01070 ## ReduceClash 0 0 0 / 24 = 0.00000 0.00000 # generation 5: best score out of 20: T0506.try1 206.74936 cost/residue, 250 clashes 0.19827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 4 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 4 2 / 5 = 0.40000 0.03304 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 3 = 0.33333 0.00075 ## FixOmega 0 2 1 / 5 = 0.20000 0.01234 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 3 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 36 = 0.02778 0.01019 ## CloseGap 0 12 10 / 54 = 0.18519 0.60243 ## HealGap 0 3 0 / 28 = 0.00000 0.00000 ## MoveGap 0 2 0 / 34 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 28 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 1 / 108 = 0.00926 0.01959 ## InsertFragment 0 4 0 / 29 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 22 = 0.00000 0.00000 ## CrossOver 0 4 0 / 24 = 0.00000 0.00000 ## CrossAndInsert 1 3 1 / 40 = 0.02500 0.00883 ## ReduceClash 0 0 0 / 27 = 0.00000 0.00000 # generation 6: best score out of 20: T0506.try1 206.73929 cost/residue, 249 clashes 0.19873 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 4 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 9 4 / 12 = 0.33333 0.01717 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 3 = 0.33333 0.00075 ## FixOmega 0 2 1 / 5 = 0.20000 0.01234 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 4 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 7 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 14 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 39 = 0.02564 0.00941 ## CloseGap 0 13 10 / 70 = 0.14286 0.46473 ## HealGap 0 3 0 / 33 = 0.00000 0.00000 ## MoveGap 0 3 0 / 43 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 33 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 128 = 0.00781 0.01653 ## InsertFragment 0 4 0 / 34 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 26 = 0.00000 0.00000 ## CrossOver 0 4 0 / 27 = 0.00000 0.00000 ## CrossAndInsert 3 3 1 / 41 = 0.02439 0.00862 ## ReduceClash 0 0 0 / 34 = 0.00000 0.00000 # generation 7: best score out of 20: T0506.try1 206.45464 cost/residue, 250 clashes 0.19827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 2 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 1 / 2 = 0.50000 0.00021 ## TweakPsiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 9 4 / 13 = 0.30769 0.01585 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 3 = 0.33333 0.00075 ## FixOmega 1 3 1 / 7 = 0.14286 0.00881 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 4 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 2 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 17 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 44 = 0.02273 0.00834 ## CloseGap 0 13 10 / 83 = 0.12048 0.39194 ## HealGap 0 5 0 / 38 = 0.00000 0.00000 ## MoveGap 0 3 0 / 46 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 35 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 148 = 0.00676 0.01429 ## InsertFragment 0 5 0 / 39 = 0.00000 0.00000 ## TwoFragment 0 2 0 / 37 = 0.00000 0.00000 ## CrossOver 0 4 0 / 29 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 46 = 0.04348 0.01409 ## ReduceClash 0 0 0 / 43 = 0.00000 0.00000 # generation 8: best score out of 20: T0506.try1 206.45464 cost/residue, 250 clashes 0.19827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 3 1 / 3 = 0.33333 0.03474 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00014 ## TweakPsiSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 10 5 / 14 = 0.35714 0.01624 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 3 = 0.33333 0.00075 ## FixOmega 1 4 1 / 10 = 0.10000 0.00617 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 4 0 / 5 = 0.00000 0.00000 ## ClashingRotamer 0 2 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 1 5 0 / 18 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 47 = 0.02128 0.00780 ## CloseGap 0 13 10 / 106 = 0.09434 0.30690 ## HealGap 0 5 0 / 41 = 0.00000 0.00000 ## MoveGap 0 5 0 / 52 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 47 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 7 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 1 / 162 = 0.00617 0.01306 ## InsertFragment 0 5 0 / 45 = 0.00000 0.00000 ## TwoFragment 0 2 0 / 46 = 0.00000 0.00000 ## CrossOver 0 5 0 / 30 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 51 = 0.03922 0.01271 ## ReduceClash 0 0 0 / 48 = 0.00000 0.00000 # generation 9: best score out of 20: T0506.try1 206.19122 cost/residue, 245 clashes 0.19748 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 4 1 / 4 = 0.25000 0.02605 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00014 ## TweakPsiSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 11 5 / 15 = 0.33333 0.01516 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 3 = 0.33333 0.00075 ## FixOmega 1 4 1 / 10 = 0.10000 0.00617 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 5 1 / 6 = 0.16667 0.01542 ## ClashingRotamer 0 2 0 / 11 = 0.00000 0.00000 ## ClusteredRotamer 1 7 0 / 21 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 58 = 0.01724 0.00632 ## CloseGap 0 15 10 / 122 = 0.08197 0.26665 ## HealGap 0 7 0 / 48 = 0.00000 0.00000 ## MoveGap 0 5 0 / 55 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 53 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 183 = 0.01093 0.01300 ## InsertFragment 0 5 0 / 47 = 0.00000 0.00000 ## TwoFragment 0 2 0 / 50 = 0.00000 0.00000 ## CrossOver 0 6 0 / 34 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 58 = 0.03448 0.01117 ## ReduceClash 0 0 0 / 54 = 0.00000 0.00000 # generation 10: best score out of 20: T0506.try1 206.19122 cost/residue, 245 clashes 0.19748 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 8 = 0.12500 0.01303 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.00014 ## TweakPsiSegment 0 4 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 1 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 14 5 / 18 = 0.27778 0.01263 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 1 / 3 = 0.33333 0.00075 ## FixOmega 1 4 1 / 10 = 0.10000 0.00617 ## Backrub 1 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 7 1 / 8 = 0.12500 0.01156 ## ClashingRotamer 0 2 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 1 7 0 / 24 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 62 = 0.01613 0.00592 ## CloseGap 0 16 10 / 142 = 0.07042 0.22909 ## HealGap 0 9 0 / 55 = 0.00000 0.00000 ## MoveGap 0 5 0 / 61 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 57 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 2 / 201 = 0.00995 0.01183 ## InsertFragment 0 5 0 / 49 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 57 = 0.00000 0.00000 ## CrossOver 0 6 0 / 35 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 65 = 0.03077 0.00997 ## ReduceClash 0 0 0 / 60 = 0.00000 0.00000 # generation 11: best score out of 20: T0506.try1 206.11176 cost/residue, 251 clashes 0.18702 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 9 = 0.11111 0.01158 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 5 = 0.40000 0.00012 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 3 2 / 3 = 0.66667 0.01919 ## TweakPsiPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 15 6 / 20 = 0.30000 0.01156 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 4 = 0.50000 0.00357 ## FixOmega 1 5 1 / 11 = 0.09091 0.00561 ## Backrub 2 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 9 1 / 10 = 0.10000 0.00925 ## ClashingRotamer 0 2 0 / 14 = 0.00000 0.00000 ## ClusteredRotamer 1 7 0 / 24 = 0.00000 0.00000 ## ReduceBreak 0 4 1 / 67 = 0.01493 0.00547 ## CloseGap 0 17 10 / 163 = 0.06135 0.19958 ## HealGap 0 9 0 / 57 = 0.00000 0.00000 ## MoveGap 0 5 0 / 66 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 64 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 3 / 215 = 0.01395 0.01143 ## InsertFragment 0 5 0 / 58 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 65 = 0.00000 0.00000 ## CrossOver 1 6 0 / 37 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 71 = 0.02817 0.00913 ## ReduceClash 0 0 0 / 64 = 0.00000 0.00000 # generation 12: best score out of 20: T0506.try1 206.11176 cost/residue, 251 clashes 0.18702 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 11 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 2 7 1 / 9 = 0.11111 0.01158 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 3 / 6 = 0.50000 0.00031 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 3 2 / 3 = 0.66667 0.01919 ## TweakPsiPhiSegment 0 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 18 7 / 23 = 0.30435 0.01242 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 2 / 4 = 0.50000 0.00357 ## FixOmega 1 5 1 / 11 = 0.09091 0.00561 ## Backrub 2 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 10 1 / 12 = 0.08333 0.00771 ## ClashingRotamer 0 2 0 / 17 = 0.00000 0.00000 ## ClusteredRotamer 1 7 0 / 25 = 0.00000 0.00000 ## ReduceBreak 0 5 1 / 71 = 0.01408 0.00517 ## CloseGap 0 19 10 / 178 = 0.05618 0.18276 ## HealGap 0 10 0 / 65 = 0.00000 0.00000 ## MoveGap 0 5 0 / 71 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 67 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 3 / 240 = 0.01250 0.01024 ## InsertFragment 0 6 0 / 63 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 71 = 0.00000 0.00000 ## CrossOver 1 7 0 / 39 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 76 = 0.02632 0.00853 ## ReduceClash 0 0 0 / 70 = 0.00000 0.00000 # generation 13: best score out of 20: T0506.try1 206.05957 cost/residue, 250 clashes 0.18827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 4 8 1 / 10 = 0.10000 0.01042 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 8 3 / 8 = 0.37500 0.00023 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 4 3 / 4 = 0.75000 0.02744 ## TweakPsiPhiSegment 1 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 21 7 / 26 = 0.26923 0.01099 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 3 / 5 = 0.60000 0.00480 ## FixOmega 1 6 1 / 12 = 0.08333 0.00514 ## Backrub 3 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 10 1 / 13 = 0.07692 0.00712 ## ClashingRotamer 0 3 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 1 7 0 / 28 = 0.00000 0.00000 ## ReduceBreak 0 5 1 / 76 = 0.01316 0.00483 ## CloseGap 0 19 10 / 205 = 0.04878 0.15869 ## HealGap 0 10 0 / 68 = 0.00000 0.00000 ## MoveGap 0 5 0 / 80 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 72 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 3 / 255 = 0.01176 0.00964 ## InsertFragment 0 6 0 / 66 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 71 = 0.00000 0.00000 ## CrossOver 1 9 0 / 42 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 82 = 0.02439 0.00790 ## ReduceClash 0 0 0 / 75 = 0.00000 0.00000 # generation 14: best score out of 20: T0506.try1 205.37286 cost/residue, 244 clashes 0.17821 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 4 8 1 / 10 = 0.10000 0.01042 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 3 / 9 = 0.33333 0.00021 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 1 8 6 / 11 = 0.54545 0.04107 ## TweakPsiPhiSegment 1 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 21 7 / 28 = 0.25000 0.01020 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 5 / 7 = 0.71429 0.00597 ## FixOmega 1 7 1 / 13 = 0.07692 0.00475 ## Backrub 4 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 10 1 / 13 = 0.07692 0.00712 ## ClashingRotamer 0 3 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 2 7 0 / 30 = 0.00000 0.00000 ## ReduceBreak 0 6 2 / 82 = 0.02439 0.01110 ## CloseGap 0 21 12 / 224 = 0.05357 0.15288 ## HealGap 0 11 0 / 73 = 0.00000 0.00000 ## MoveGap 0 5 0 / 87 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 77 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 3 / 266 = 0.01128 0.00924 ## InsertFragment 0 6 0 / 73 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 77 = 0.00000 0.00000 ## CrossOver 1 9 0 / 49 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 88 = 0.02273 0.00736 ## ReduceClash 0 0 0 / 77 = 0.00000 0.00000 # generation 15: best score out of 20: T0506.try1 205.21793 cost/residue, 235 clashes 0.15703 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 4 9 1 / 11 = 0.09091 0.00947 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 12 5 / 12 = 0.41667 0.00042 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 2 12 7 / 19 = 0.36842 0.02666 ## TweakPsiPhiSegment 1 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 21 7 / 31 = 0.22581 0.00922 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 7 5 / 8 = 0.62500 0.00522 ## FixOmega 1 7 1 / 14 = 0.07143 0.00441 ## Backrub 4 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 10 1 / 13 = 0.07692 0.00712 ## ClashingRotamer 0 3 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 2 7 0 / 33 = 0.00000 0.00000 ## ReduceBreak 0 6 2 / 92 = 0.02174 0.00989 ## CloseGap 0 24 14 / 238 = 0.05882 0.14720 ## HealGap 0 12 0 / 75 = 0.00000 0.00000 ## MoveGap 0 5 0 / 89 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 85 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 3 / 290 = 0.01034 0.00848 ## InsertFragment 0 6 0 / 75 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 82 = 0.00000 0.00000 ## CrossOver 1 9 0 / 49 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 95 = 0.02105 0.00682 ## ReduceClash 0 0 0 / 82 = 0.00000 0.00000 # generation 16: best score out of 20: T0506.try1 205.21793 cost/residue, 235 clashes 0.15703 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 5 9 1 / 11 = 0.09091 0.00947 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 12 5 / 13 = 0.38462 0.00039 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 3 15 7 / 22 = 0.31818 0.02303 ## TweakPsiPhiSegment 2 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 21 7 / 32 = 0.21875 0.00893 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 6 / 11 = 0.54545 0.00510 ## FixOmega 1 7 1 / 14 = 0.07143 0.00441 ## Backrub 4 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 11 1 / 14 = 0.07143 0.00661 ## ClashingRotamer 0 3 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 3 8 0 / 34 = 0.00000 0.00000 ## ReduceBreak 0 6 2 / 102 = 0.01961 0.00892 ## CloseGap 0 26 16 / 262 = 0.06107 0.13963 ## HealGap 0 13 0 / 83 = 0.00000 0.00000 ## MoveGap 0 5 0 / 95 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 89 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 8 3 / 303 = 0.00990 0.00811 ## InsertFragment 0 6 0 / 77 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 90 = 0.00000 0.00000 ## CrossOver 1 10 0 / 53 = 0.00000 0.00000 ## CrossAndInsert 3 4 2 / 100 = 0.02000 0.00648 ## ReduceClash 0 0 0 / 85 = 0.00000 0.00000 # generation 17: best score out of 20: T0506.try1 203.05058 cost/residue, 224 clashes 0.15197 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 5 9 1 / 11 = 0.09091 0.00947 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 13 6 / 15 = 0.40000 0.00723 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 3 16 9 / 24 = 0.37500 0.02469 ## TweakPsiPhiSegment 2 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 23 8 / 34 = 0.23529 0.01772 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 10 6 / 12 = 0.50000 0.00468 ## FixOmega 1 7 1 / 14 = 0.07143 0.00441 ## Backrub 4 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 13 1 / 16 = 0.06250 0.00578 ## ClashingRotamer 0 3 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 3 9 0 / 35 = 0.00000 0.00000 ## ReduceBreak 0 6 2 / 107 = 0.01869 0.00851 ## CloseGap 0 27 17 / 283 = 0.06007 0.13714 ## HealGap 0 13 0 / 86 = 0.00000 0.00000 ## MoveGap 0 6 0 / 99 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 92 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 332 = 0.00904 0.00740 ## InsertFragment 0 6 0 / 84 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 91 = 0.00000 0.00000 ## CrossOver 1 10 0 / 54 = 0.00000 0.00000 ## CrossAndInsert 4 5 3 / 106 = 0.02830 0.00959 ## ReduceClash 0 0 0 / 90 = 0.00000 0.00000 Error: Colinear points for locating spot monomeric-50pc-wet-6.5.spot for (T0506)Y126 # generation 18: best score out of 20: T0506.try1 203.05058 cost/residue, 224 clashes 0.15197 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 9 1 / 12 = 0.08333 0.00868 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 15 6 / 20 = 0.30000 0.00542 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 3 17 10 / 29 = 0.34483 0.02215 ## TweakPsiPhiSegment 2 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 24 8 / 36 = 0.22222 0.01674 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 10 6 / 12 = 0.50000 0.00468 ## FixOmega 1 7 1 / 14 = 0.07143 0.00441 ## Backrub 4 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 13 1 / 26 = 0.03846 0.00356 ## ClashingRotamer 0 3 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 3 9 0 / 35 = 0.00000 0.00000 ## ReduceBreak 0 6 2 / 112 = 0.01786 0.00813 ## CloseGap 0 33 19 / 299 = 0.06355 0.13726 ## HealGap 0 13 0 / 91 = 0.00000 0.00000 ## MoveGap 0 6 0 / 104 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 98 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 3 / 342 = 0.00877 0.00719 ## InsertFragment 0 7 0 / 91 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 94 = 0.00000 0.00000 ## CrossOver 1 10 0 / 56 = 0.00000 0.00000 ## CrossAndInsert 5 5 3 / 115 = 0.02609 0.00884 ## ReduceClash 0 0 0 / 95 = 0.00000 0.00000 # generation 19: best score out of 20: T0506.try1 202.96263 cost/residue, 221 clashes 0.15203 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 7 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 5 9 1 / 13 = 0.07692 0.00802 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 16 6 / 22 = 0.27273 0.00493 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 4 20 11 / 34 = 0.32353 0.01909 ## TweakPsiPhiSegment 2 3 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 29 10 / 48 = 0.20833 0.01526 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 12 9 / 16 = 0.56250 0.00481 ## FixOmega 1 7 1 / 14 = 0.07143 0.00441 ## Backrub 4 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 14 1 / 28 = 0.03571 0.00330 ## ClashingRotamer 0 3 0 / 22 = 0.00000 0.00000 ## ClusteredRotamer 3 10 0 / 37 = 0.00000 0.00000 ## ReduceBreak 0 6 2 / 115 = 0.01739 0.00791 ## CloseGap 0 33 19 / 317 = 0.05994 0.12947 ## HealGap 0 13 0 / 93 = 0.00000 0.00000 ## MoveGap 0 6 0 / 106 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 102 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 3 / 362 = 0.00829 0.00679 ## InsertFragment 0 7 0 / 94 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 99 = 0.00000 0.00000 ## CrossOver 1 10 0 / 57 = 0.00000 0.00000 ## CrossAndInsert 5 5 3 / 118 = 0.02542 0.00861 ## ReduceClash 0 1 1 / 100 = 0.01000 0.00425 # generation 20: best score out of 20: T0506.try1 202.94708 cost/residue, 221 clashes 0.15203 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 7 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 5 10 2 / 16 = 0.12500 0.00651 ## TweakPhiSegment 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 1 17 6 / 23 = 0.26087 0.00471 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 7 24 13 / 43 = 0.30233 0.01766 ## TweakPsiPhiSegment 2 3 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 29 10 / 51 = 0.19608 0.01436 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 14 11 / 18 = 0.61111 0.00602 ## FixOmega 1 7 1 / 14 = 0.07143 0.00441 ## Backrub 4 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 14 1 / 30 = 0.03333 0.00308 ## ClashingRotamer 0 4 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 10 0 / 40 = 0.00000 0.00000 ## ReduceBreak 0 6 2 / 118 = 0.01695 0.00771 ## CloseGap 0 36 19 / 342 = 0.05556 0.12000 ## HealGap 0 13 0 / 94 = 0.00000 0.00000 ## MoveGap 0 6 0 / 109 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 104 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 3 / 379 = 0.00792 0.00649 ## InsertFragment 0 7 0 / 95 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 103 = 0.00000 0.00000 ## CrossOver 1 10 0 / 58 = 0.00000 0.00000 ## CrossAndInsert 5 5 3 / 124 = 0.02419 0.00820 ## ReduceClash 0 1 1 / 110 = 0.00909 0.00386 # generation 21: best score out of 20: T0506.try1 202.18208 cost/residue, 235 clashes 0.15203 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 7 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 5 10 2 / 17 = 0.11765 0.00613 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 1 19 7 / 25 = 0.28000 0.00640 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 8 25 13 / 44 = 0.29545 0.01725 ## TweakPsiPhiSegment 2 3 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 30 10 / 58 = 0.17241 0.01263 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 15 12 / 19 = 0.63158 0.00783 ## FixOmega 1 7 1 / 14 = 0.07143 0.00441 ## Backrub 4 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 14 1 / 30 = 0.03333 0.00308 ## ClashingRotamer 0 4 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 10 0 / 43 = 0.00000 0.00000 ## ReduceBreak 0 7 3 / 124 = 0.02419 0.01145 ## CloseGap 0 40 19 / 368 = 0.05163 0.11152 ## HealGap 0 13 0 / 97 = 0.00000 0.00000 ## MoveGap 0 6 0 / 113 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 106 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 4 / 400 = 0.01000 0.00806 ## InsertFragment 0 7 0 / 97 = 0.00000 0.00000 ## TwoFragment 0 3 0 / 108 = 0.00000 0.00000 ## CrossOver 1 11 1 / 61 = 0.01639 0.00078 ## CrossAndInsert 5 5 3 / 127 = 0.02362 0.00800 ## ReduceClash 0 1 1 / 113 = 0.00885 0.00376 # generation 22: best score out of 20: T0506.try1 202.07397 cost/residue, 236 clashes 0.15203 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 7 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 6 11 2 / 20 = 0.10000 0.00521 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 1 22 9 / 28 = 0.32143 0.00581 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 11 27 14 / 48 = 0.29167 0.01685 ## TweakPsiPhiSegment 2 3 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 32 10 / 62 = 0.16129 0.01182 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 16 12 / 21 = 0.57143 0.00709 ## FixOmega 1 7 1 / 15 = 0.06667 0.00411 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 14 1 / 31 = 0.03226 0.00298 ## ClashingRotamer 0 4 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 10 0 / 43 = 0.00000 0.00000 ## ReduceBreak 0 7 3 / 129 = 0.02326 0.01101 ## CloseGap 0 41 19 / 386 = 0.04922 0.10632 ## HealGap 0 13 0 / 102 = 0.00000 0.00000 ## MoveGap 0 6 0 / 118 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 108 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 23 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 420 = 0.00952 0.00767 ## InsertFragment 0 8 1 / 101 = 0.00990 0.00107 ## TwoFragment 0 3 0 / 113 = 0.00000 0.00000 ## CrossOver 1 13 1 / 66 = 0.01515 0.00072 ## CrossAndInsert 5 5 3 / 131 = 0.02290 0.00776 ## ReduceClash 0 1 1 / 119 = 0.00840 0.00357 # generation 23: best score out of 20: T0506.try1 201.92941 cost/residue, 235 clashes 0.15080 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 8 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 6 11 2 / 20 = 0.10000 0.00521 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 1 23 10 / 29 = 0.34483 0.00575 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 12 27 14 / 49 = 0.28571 0.01650 ## TweakPsiPhiSegment 2 3 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 34 10 / 64 = 0.15625 0.01145 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 18 14 / 25 = 0.56000 0.00730 ## FixOmega 1 7 1 / 15 = 0.06667 0.00411 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 16 2 / 33 = 0.06061 0.00779 ## ClashingRotamer 0 4 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 3 11 0 / 44 = 0.00000 0.00000 ## ReduceBreak 0 7 3 / 135 = 0.02222 0.01052 ## CloseGap 0 42 19 / 402 = 0.04726 0.10209 ## HealGap 0 14 1 / 110 = 0.00909 0.00230 ## MoveGap 0 6 0 / 120 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 110 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 439 = 0.00911 0.00734 ## InsertFragment 0 8 1 / 107 = 0.00935 0.00101 ## TwoFragment 0 3 0 / 118 = 0.00000 0.00000 ## CrossOver 1 13 1 / 70 = 0.01429 0.00068 ## CrossAndInsert 5 6 3 / 138 = 0.02174 0.00736 ## ReduceClash 0 1 1 / 124 = 0.00806 0.00343 # generation 24: best score out of 20: T0506.try1 201.92624 cost/residue, 235 clashes 0.15080 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 8 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 7 12 2 / 21 = 0.09524 0.00496 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 1 24 11 / 30 = 0.36667 0.00579 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 12 28 14 / 54 = 0.25926 0.01498 ## TweakPsiPhiSegment 2 5 1 / 8 = 0.12500 0.00121 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 36 12 / 68 = 0.17647 0.01154 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 21 17 / 29 = 0.58621 0.00820 ## FixOmega 1 7 1 / 17 = 0.05882 0.00363 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 17 2 / 38 = 0.05263 0.00677 ## ClashingRotamer 0 4 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 3 11 0 / 44 = 0.00000 0.00000 ## ReduceBreak 0 7 3 / 142 = 0.02113 0.01000 ## CloseGap 0 43 19 / 423 = 0.04492 0.09702 ## HealGap 0 14 1 / 116 = 0.00862 0.00218 ## MoveGap 0 6 0 / 121 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 114 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 454 = 0.00881 0.00710 ## InsertFragment 0 8 1 / 109 = 0.00917 0.00099 ## TwoFragment 0 3 0 / 120 = 0.00000 0.00000 ## CrossOver 1 13 1 / 73 = 0.01370 0.00065 ## CrossAndInsert 5 6 3 / 144 = 0.02083 0.00706 ## ReduceClash 0 1 1 / 126 = 0.00794 0.00337 # generation 25: best score out of 20: T0506.try1 201.81081 cost/residue, 237 clashes 0.15105 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 5 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 3 0 / 8 = 0.00000 0.00000 ## OptSubtree 1 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 13 3 / 22 = 0.13636 0.00474 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 1 26 12 / 32 = 0.37500 0.00569 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 12 30 15 / 58 = 0.25862 0.01502 ## TweakPsiPhiSegment 2 5 1 / 8 = 0.12500 0.00121 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 37 12 / 71 = 0.16901 0.01105 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 26 21 / 36 = 0.58333 0.00757 ## FixOmega 1 7 1 / 17 = 0.05882 0.00363 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 3 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 17 2 / 38 = 0.05263 0.00677 ## ClashingRotamer 0 4 0 / 26 = 0.00000 0.00000 ## ClusteredRotamer 5 11 0 / 46 = 0.00000 0.00000 ## ReduceBreak 0 7 3 / 149 = 0.02013 0.00953 ## CloseGap 0 43 19 / 435 = 0.04368 0.09435 ## HealGap 0 15 2 / 126 = 0.01587 0.00424 ## MoveGap 0 6 0 / 121 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 117 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 471 = 0.00849 0.00684 ## InsertFragment 0 8 1 / 115 = 0.00870 0.00094 ## TwoFragment 0 3 0 / 123 = 0.00000 0.00000 ## CrossOver 1 13 1 / 76 = 0.01316 0.00063 ## CrossAndInsert 5 6 3 / 153 = 0.01961 0.00664 ## ReduceClash 0 1 1 / 132 = 0.00758 0.00322 # generation 26: best score out of 20: T0506.try1 201.56253 cost/residue, 230 clashes 0.15087 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 4 1 / 9 = 0.11111 0.02759 ## OptSubtree 1 0 0 / 22 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 14 4 / 24 = 0.16667 0.00440 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 1 29 12 / 38 = 0.31579 0.00479 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 14 33 15 / 66 = 0.22727 0.01320 ## TweakPsiPhiSegment 2 6 2 / 10 = 0.20000 0.00955 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 37 12 / 71 = 0.16901 0.01105 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 26 21 / 36 = 0.58333 0.00757 ## FixOmega 1 7 1 / 18 = 0.05556 0.00343 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 17 2 / 40 = 0.05000 0.00643 ## ClashingRotamer 0 4 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 5 11 0 / 46 = 0.00000 0.00000 ## ReduceBreak 0 7 3 / 156 = 0.01923 0.00910 ## CloseGap 0 44 19 / 445 = 0.04270 0.09223 ## HealGap 0 16 3 / 130 = 0.02308 0.00605 ## MoveGap 0 6 0 / 122 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 121 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 490 = 0.00816 0.00658 ## InsertFragment 0 8 1 / 121 = 0.00826 0.00089 ## TwoFragment 0 3 0 / 124 = 0.00000 0.00000 ## CrossOver 1 14 1 / 83 = 0.01205 0.00058 ## CrossAndInsert 5 6 3 / 158 = 0.01899 0.00643 ## ReduceClash 0 1 1 / 143 = 0.00699 0.00297 # generation 27: best score out of 20: T0506.try1 201.53304 cost/residue, 230 clashes 0.15087 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 7 4 / 26 = 0.15385 0.01340 ## OptSubtree 1 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 15 4 / 25 = 0.16000 0.00422 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 1 30 13 / 40 = 0.32500 0.00491 ## TweakPsiSegment 0 5 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSubtree 14 33 15 / 67 = 0.22388 0.01301 ## TweakPsiPhiSegment 3 7 2 / 13 = 0.15385 0.00735 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 38 12 / 73 = 0.16438 0.01075 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 27 22 / 38 = 0.57895 0.00795 ## FixOmega 1 7 1 / 18 = 0.05556 0.00343 ## Backrub 5 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 4 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 17 2 / 40 = 0.05000 0.00643 ## ClashingRotamer 0 4 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 5 11 0 / 46 = 0.00000 0.00000 ## ReduceBreak 0 7 3 / 162 = 0.01852 0.00877 ## CloseGap 0 47 19 / 461 = 0.04121 0.08903 ## HealGap 0 16 4 / 138 = 0.02899 0.00581 ## MoveGap 0 6 0 / 124 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 126 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 501 = 0.00798 0.00643 ## InsertFragment 0 9 2 / 128 = 0.01562 0.00320 ## TwoFragment 0 3 0 / 128 = 0.00000 0.00000 ## CrossOver 1 14 1 / 84 = 0.01190 0.00057 ## CrossAndInsert 7 6 3 / 160 = 0.01875 0.00635 ## ReduceClash 0 1 1 / 148 = 0.00676 0.00287 # generation 28: best score out of 20: T0506.try1 201.10628 cost/residue, 225 clashes 0.13713 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 7 4 / 29 = 0.13793 0.01201 ## OptSubtree 1 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 15 4 / 26 = 0.15385 0.00406 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 1 32 14 / 44 = 0.31818 0.00473 ## TweakPsiSegment 0 6 0 / 7 = 0.00000 0.00000 ## TweakPsiPhiSubtree 14 34 16 / 68 = 0.23529 0.01388 ## TweakPsiPhiSegment 4 10 2 / 18 = 0.11111 0.00530 ## TweakHbondSubtree 0 2 1 / 3 = 0.33333 0.00281 ## TweakHbondSegment 0 38 12 / 74 = 0.16216 0.01061 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 28 23 / 40 = 0.57500 0.00767 ## FixOmega 1 7 1 / 18 = 0.05556 0.00343 ## Backrub 5 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 4 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 18 2 / 43 = 0.04651 0.00598 ## ClashingRotamer 0 4 0 / 31 = 0.00000 0.00000 ## ClusteredRotamer 6 11 0 / 47 = 0.00000 0.00000 ## ReduceBreak 0 8 4 / 167 = 0.02395 0.01106 ## CloseGap 0 48 19 / 470 = 0.04043 0.08732 ## HealGap 0 16 4 / 146 = 0.02740 0.00549 ## MoveGap 0 6 0 / 126 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 131 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 27 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 516 = 0.00775 0.00625 ## InsertFragment 0 9 2 / 137 = 0.01460 0.00299 ## TwoFragment 0 3 0 / 131 = 0.00000 0.00000 ## CrossOver 1 15 1 / 89 = 0.01124 0.00054 ## CrossAndInsert 7 6 3 / 162 = 0.01852 0.00627 ## ReduceClash 0 1 1 / 157 = 0.00637 0.00271 # generation 29: best score out of 20: T0506.try1 200.77367 cost/residue, 229 clashes 0.12549 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 7 4 / 36 = 0.11111 0.00968 ## OptSubtree 1 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 17 5 / 28 = 0.17857 0.00377 ## TweakPhiSegment 0 3 1 / 5 = 0.20000 0.00001 ## TweakPsiSubtree 1 33 14 / 47 = 0.29787 0.00443 ## TweakPsiSegment 0 6 0 / 7 = 0.00000 0.00000 ## TweakPsiPhiSubtree 14 35 17 / 71 = 0.23944 0.01349 ## TweakPsiPhiSegment 4 12 3 / 21 = 0.14286 0.00650 ## TweakHbondSubtree 0 2 1 / 5 = 0.20000 0.00169 ## TweakHbondSegment 0 38 12 / 76 = 0.15789 0.01033 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 28 24 / 43 = 0.55814 0.00714 ## FixOmega 1 7 1 / 19 = 0.05263 0.00325 ## Backrub 5 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 4 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 18 2 / 44 = 0.04545 0.00584 ## ClashingRotamer 0 4 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 6 12 0 / 50 = 0.00000 0.00000 ## ReduceBreak 0 8 4 / 175 = 0.02286 0.01055 ## CloseGap 0 50 19 / 482 = 0.03942 0.08515 ## HealGap 0 17 5 / 154 = 0.03247 0.00737 ## MoveGap 0 6 0 / 130 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 135 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 528 = 0.00758 0.00610 ## InsertFragment 0 10 3 / 143 = 0.02098 0.00318 ## TwoFragment 0 3 0 / 133 = 0.00000 0.00000 ## CrossOver 1 15 1 / 89 = 0.01124 0.00054 ## CrossAndInsert 7 6 3 / 166 = 0.01807 0.00612 ## ReduceClash 0 1 1 / 161 = 0.00621 0.00264 # generation 30: best score out of 20: T0506.try1 200.77367 cost/residue, 229 clashes 0.12549 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 6 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 8 5 / 39 = 0.12821 0.01257 ## OptSubtree 1 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 17 5 / 29 = 0.17241 0.00364 ## TweakPhiSegment 0 3 1 / 5 = 0.20000 0.00001 ## TweakPsiSubtree 1 35 14 / 51 = 0.27451 0.00408 ## TweakPsiSegment 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSubtree 15 37 18 / 73 = 0.24658 0.01451 ## TweakPsiPhiSegment 4 12 3 / 21 = 0.14286 0.00650 ## TweakHbondSubtree 0 4 1 / 9 = 0.11111 0.00094 ## TweakHbondSegment 0 39 12 / 78 = 0.15385 0.01006 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 29 24 / 47 = 0.51064 0.00653 ## FixOmega 1 7 1 / 20 = 0.05000 0.00308 ## Backrub 6 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 21 2 / 48 = 0.04167 0.00536 ## ClashingRotamer 0 4 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 6 12 0 / 52 = 0.00000 0.00000 ## ReduceBreak 0 8 4 / 185 = 0.02162 0.00998 ## CloseGap 0 51 19 / 491 = 0.03870 0.08359 ## HealGap 0 18 6 / 162 = 0.03704 0.00906 ## MoveGap 0 6 0 / 131 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 139 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 541 = 0.00739 0.00596 ## InsertFragment 0 10 3 / 149 = 0.02013 0.00305 ## TwoFragment 0 3 0 / 136 = 0.00000 0.00000 ## CrossOver 1 15 1 / 92 = 0.01087 0.00052 ## CrossAndInsert 7 6 3 / 173 = 0.01734 0.00587 ## ReduceClash 0 1 1 / 164 = 0.00610 0.00259 # generation 31: best score out of 20: T0506.try1 200.66553 cost/residue, 229 clashes 0.12549 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 7 = 0.14286 0.01545 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 43 = 0.11628 0.01140 ## OptSubtree 1 0 0 / 29 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 18 6 / 30 = 0.20000 0.00352 ## TweakPhiSegment 1 3 1 / 5 = 0.20000 0.00001 ## TweakPsiSubtree 1 36 15 / 52 = 0.28846 0.00405 ## TweakPsiSegment 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSubtree 15 39 18 / 79 = 0.22785 0.01341 ## TweakPsiPhiSegment 4 12 3 / 23 = 0.13043 0.00593 ## TweakHbondSubtree 0 4 1 / 9 = 0.11111 0.00094 ## TweakHbondSegment 0 39 12 / 81 = 0.14815 0.00969 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 30 25 / 49 = 0.51020 0.00627 ## FixOmega 1 7 1 / 20 = 0.05000 0.00308 ## Backrub 6 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 22 2 / 50 = 0.04000 0.00514 ## ClashingRotamer 0 4 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 6 12 0 / 52 = 0.00000 0.00000 ## ReduceBreak 0 8 4 / 195 = 0.02051 0.00947 ## CloseGap 0 51 19 / 499 = 0.03808 0.08225 ## HealGap 0 21 9 / 175 = 0.05143 0.01052 ## MoveGap 0 6 0 / 132 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 144 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 551 = 0.00726 0.00585 ## InsertFragment 0 10 3 / 160 = 0.01875 0.00284 ## TwoFragment 0 3 0 / 143 = 0.00000 0.00000 ## CrossOver 1 16 1 / 97 = 0.01031 0.00049 ## CrossAndInsert 7 6 3 / 175 = 0.01714 0.00581 ## ReduceClash 0 1 1 / 167 = 0.00599 0.00254 # generation 32: best score out of 20: T0506.try1 200.61787 cost/residue, 229 clashes 0.12549 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 4 / 18 = 0.22222 0.01415 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 45 = 0.11111 0.01089 ## OptSubtree 1 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 18 6 / 31 = 0.19355 0.00341 ## TweakPhiSegment 1 3 1 / 6 = 0.16667 0.00001 ## TweakPsiSubtree 1 37 15 / 54 = 0.27778 0.00390 ## TweakPsiSegment 0 7 0 / 8 = 0.00000 0.00000 ## TweakPsiPhiSubtree 15 41 19 / 82 = 0.23171 0.01292 ## TweakPsiPhiSegment 4 12 3 / 24 = 0.12500 0.00569 ## TweakHbondSubtree 0 5 1 / 12 = 0.08333 0.00070 ## TweakHbondSegment 0 39 12 / 82 = 0.14634 0.00957 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 31 25 / 51 = 0.49020 0.00602 ## FixOmega 1 7 2 / 22 = 0.09091 0.00599 ## Backrub 6 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 22 2 / 52 = 0.03846 0.00495 ## ClashingRotamer 0 4 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 6 12 0 / 52 = 0.00000 0.00000 ## ReduceBreak 0 8 4 / 197 = 0.02030 0.00937 ## CloseGap 0 53 19 / 508 = 0.03740 0.08079 ## HealGap 0 21 9 / 179 = 0.05028 0.01029 ## MoveGap 0 6 0 / 137 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 149 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 570 = 0.00702 0.00565 ## InsertFragment 0 10 3 / 166 = 0.01807 0.00274 ## TwoFragment 0 3 0 / 145 = 0.00000 0.00000 ## CrossOver 2 17 1 / 101 = 0.00990 0.00047 ## CrossAndInsert 7 6 3 / 180 = 0.01667 0.00565 ## ReduceClash 0 1 1 / 171 = 0.00585 0.00248 # generation 33: best score out of 20: T0506.try1 200.46973 cost/residue, 226 clashes 0.12553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 5 / 23 = 0.21739 0.01370 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 49 = 0.10204 0.01000 ## OptSubtree 1 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 18 7 / 32 = 0.21875 0.00330 ## TweakPhiSegment 1 3 1 / 6 = 0.16667 0.00001 ## TweakPsiSubtree 1 39 16 / 58 = 0.27586 0.00693 ## TweakPsiSegment 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSubtree 15 42 20 / 84 = 0.23810 0.01360 ## TweakPsiPhiSegment 6 15 5 / 29 = 0.17241 0.00603 ## TweakHbondSubtree 0 5 1 / 12 = 0.08333 0.00070 ## TweakHbondSegment 0 40 12 / 85 = 0.14118 0.00923 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 32 25 / 52 = 0.48077 0.00591 ## FixOmega 1 8 2 / 27 = 0.07407 0.00488 ## Backrub 6 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 23 2 / 55 = 0.03636 0.00468 ## ClashingRotamer 0 4 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 6 13 1 / 55 = 0.01818 0.00083 ## ReduceBreak 0 8 4 / 199 = 0.02010 0.00928 ## CloseGap 0 53 19 / 517 = 0.03675 0.07938 ## HealGap 0 22 9 / 188 = 0.04787 0.00979 ## MoveGap 0 6 0 / 138 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 156 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 583 = 0.00686 0.00553 ## InsertFragment 0 10 3 / 169 = 0.01775 0.00269 ## TwoFragment 0 3 0 / 153 = 0.00000 0.00000 ## CrossOver 2 17 1 / 101 = 0.00990 0.00047 ## CrossAndInsert 7 6 3 / 182 = 0.01648 0.00558 ## ReduceClash 0 1 1 / 178 = 0.00562 0.00239 # generation 34: best score out of 20: T0506.try1 200.46579 cost/residue, 226 clashes 0.12553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 5 / 29 = 0.17241 0.01086 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 55 = 0.09091 0.00891 ## OptSubtree 1 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 25 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 18 7 / 32 = 0.21875 0.00330 ## TweakPhiSegment 1 3 1 / 6 = 0.16667 0.00001 ## TweakPsiSubtree 1 43 17 / 63 = 0.26984 0.00652 ## TweakPsiSegment 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSubtree 15 43 21 / 90 = 0.23333 0.01306 ## TweakPsiPhiSegment 6 17 5 / 31 = 0.16129 0.00564 ## TweakHbondSubtree 0 5 1 / 14 = 0.07143 0.00060 ## TweakHbondSegment 0 41 12 / 88 = 0.13636 0.00892 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 33 26 / 54 = 0.48148 0.00576 ## FixOmega 1 8 2 / 30 = 0.06667 0.00440 ## Backrub 6 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 24 2 / 56 = 0.03571 0.00459 ## ClashingRotamer 0 4 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 7 13 1 / 55 = 0.01818 0.00083 ## ReduceBreak 0 8 4 / 209 = 0.01914 0.00884 ## CloseGap 0 54 19 / 528 = 0.03598 0.07773 ## HealGap 0 22 9 / 193 = 0.04663 0.00954 ## MoveGap 0 6 0 / 140 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 159 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 598 = 0.00669 0.00539 ## InsertFragment 0 11 4 / 173 = 0.02312 0.00317 ## TwoFragment 0 3 0 / 154 = 0.00000 0.00000 ## CrossOver 2 17 1 / 102 = 0.00980 0.00047 ## CrossAndInsert 7 6 3 / 185 = 0.01622 0.00549 ## ReduceClash 0 1 1 / 182 = 0.00549 0.00233 # generation 35: best score out of 20: T0506.try1 200.43845 cost/residue, 233 clashes 0.12273 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 6 / 34 = 0.17647 0.01079 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 58 = 0.08621 0.00845 ## OptSubtree 1 0 0 / 32 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 21 8 / 35 = 0.22857 0.00302 ## TweakPhiSegment 1 3 1 / 6 = 0.16667 0.00001 ## TweakPsiSubtree 1 44 17 / 66 = 0.25758 0.00623 ## TweakPsiSegment 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSubtree 17 44 22 / 93 = 0.23656 0.01330 ## TweakPsiPhiSegment 6 18 5 / 32 = 0.15625 0.00546 ## TweakHbondSubtree 0 5 1 / 14 = 0.07143 0.00060 ## TweakHbondSegment 0 41 13 / 90 = 0.14444 0.00896 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 35 28 / 57 = 0.49123 0.00587 ## FixOmega 1 9 2 / 32 = 0.06250 0.00412 ## Backrub 6 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 24 2 / 57 = 0.03509 0.00451 ## ClashingRotamer 0 4 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 8 13 1 / 57 = 0.01754 0.00080 ## ReduceBreak 0 8 4 / 219 = 0.01826 0.00843 ## CloseGap 0 54 19 / 535 = 0.03551 0.07671 ## HealGap 0 25 10 / 203 = 0.04926 0.00917 ## MoveGap 0 6 0 / 145 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 164 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 615 = 0.00650 0.00524 ## InsertFragment 0 11 4 / 175 = 0.02286 0.00313 ## TwoFragment 0 3 0 / 155 = 0.00000 0.00000 ## CrossOver 2 17 1 / 106 = 0.00943 0.00045 ## CrossAndInsert 7 6 3 / 190 = 0.01579 0.00535 ## ReduceClash 0 1 1 / 186 = 0.00538 0.00228 # generation 36: best score out of 20: T0506.try1 200.17807 cost/residue, 219 clashes 0.12553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 7 / 39 = 0.17949 0.01356 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 62 = 0.08065 0.00791 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 21 8 / 37 = 0.21622 0.00286 ## TweakPhiSegment 1 3 1 / 6 = 0.16667 0.00001 ## TweakPsiSubtree 1 48 19 / 71 = 0.26761 0.00730 ## TweakPsiSegment 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSubtree 18 45 22 / 95 = 0.23158 0.01302 ## TweakPsiPhiSegment 7 19 5 / 34 = 0.14706 0.00514 ## TweakHbondSubtree 0 5 1 / 14 = 0.07143 0.00060 ## TweakHbondSegment 0 42 13 / 94 = 0.13830 0.00858 ## TweakMultimer 16 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 36 29 / 59 = 0.49153 0.00580 ## FixOmega 1 9 2 / 33 = 0.06061 0.00400 ## Backrub 7 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 25 3 / 60 = 0.05000 0.00723 ## ClashingRotamer 0 4 0 / 36 = 0.00000 0.00000 ## ClusteredRotamer 9 13 1 / 59 = 0.01695 0.00077 ## ReduceBreak 0 8 4 / 225 = 0.01778 0.00821 ## CloseGap 0 54 19 / 546 = 0.03480 0.07517 ## HealGap 0 26 11 / 210 = 0.05238 0.00889 ## MoveGap 0 6 0 / 147 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 169 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 631 = 0.00634 0.00511 ## InsertFragment 0 11 4 / 181 = 0.02210 0.00303 ## TwoFragment 0 3 0 / 158 = 0.00000 0.00000 ## CrossOver 2 18 2 / 109 = 0.01835 0.00317 ## CrossAndInsert 7 6 3 / 193 = 0.01554 0.00527 ## ReduceClash 0 1 1 / 188 = 0.00532 0.00226 # generation 37: best score out of 20: T0506.try1 200.17154 cost/residue, 219 clashes 0.12617 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 7 / 44 = 0.15909 0.01202 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 63 = 0.07937 0.00778 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 21 8 / 37 = 0.21622 0.00286 ## TweakPhiSegment 1 4 1 / 7 = 0.14286 0.00000 ## TweakPsiSubtree 1 49 19 / 72 = 0.26389 0.00720 ## TweakPsiSegment 0 7 0 / 9 = 0.00000 0.00000 ## TweakPsiPhiSubtree 18 48 23 / 98 = 0.23469 0.01269 ## TweakPsiPhiSegment 7 20 6 / 37 = 0.16216 0.00487 ## TweakHbondSubtree 0 5 1 / 14 = 0.07143 0.00060 ## TweakHbondSegment 0 43 13 / 97 = 0.13402 0.00832 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 39 30 / 63 = 0.47619 0.00548 ## FixOmega 1 9 2 / 35 = 0.05714 0.00377 ## Backrub 7 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 25 3 / 61 = 0.04918 0.00711 ## ClashingRotamer 0 4 0 / 37 = 0.00000 0.00000 ## ClusteredRotamer 9 13 1 / 61 = 0.01639 0.00075 ## ReduceBreak 0 8 4 / 231 = 0.01732 0.00800 ## CloseGap 0 54 19 / 556 = 0.03417 0.07381 ## HealGap 0 26 11 / 212 = 0.05189 0.00880 ## MoveGap 0 6 0 / 150 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 175 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 653 = 0.00613 0.00494 ## InsertFragment 0 11 4 / 188 = 0.02128 0.00291 ## TwoFragment 0 3 0 / 162 = 0.00000 0.00000 ## CrossOver 3 19 2 / 112 = 0.01786 0.00308 ## CrossAndInsert 7 6 3 / 200 = 0.01500 0.00508 ## ReduceClash 0 1 1 / 190 = 0.00526 0.00224 # generation 38: best score out of 20: T0506.try1 200.13991 cost/residue, 219 clashes 0.12553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 12 8 / 50 = 0.16000 0.01317 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 65 = 0.07692 0.00754 ## OptSubtree 1 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 21 8 / 37 = 0.21622 0.00286 ## TweakPhiSegment 1 4 1 / 7 = 0.14286 0.00000 ## TweakPsiSubtree 1 52 20 / 79 = 0.25316 0.00660 ## TweakPsiSegment 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSubtree 18 51 25 / 102 = 0.24510 0.01263 ## TweakPsiPhiSegment 7 21 6 / 41 = 0.14634 0.00439 ## TweakHbondSubtree 0 5 1 / 14 = 0.07143 0.00060 ## TweakHbondSegment 0 44 14 / 98 = 0.14286 0.00824 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 39 31 / 66 = 0.46970 0.00527 ## FixOmega 1 9 2 / 35 = 0.05714 0.00377 ## Backrub 7 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 26 3 / 65 = 0.04615 0.00668 ## ClashingRotamer 0 4 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 9 13 1 / 64 = 0.01562 0.00071 ## ReduceBreak 0 8 4 / 234 = 0.01709 0.00789 ## CloseGap 0 54 19 / 566 = 0.03357 0.07251 ## HealGap 0 28 11 / 224 = 0.04911 0.00833 ## MoveGap 0 6 0 / 152 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 178 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 667 = 0.00600 0.00483 ## InsertFragment 0 11 4 / 195 = 0.02051 0.00281 ## TwoFragment 0 3 0 / 165 = 0.00000 0.00000 ## CrossOver 3 19 2 / 113 = 0.01770 0.00305 ## CrossAndInsert 7 6 3 / 204 = 0.01471 0.00498 ## ReduceClash 0 1 1 / 192 = 0.00521 0.00221 # generation 39: best score out of 20: T0506.try1 200.07533 cost/residue, 219 clashes 0.12663 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 9 / 56 = 0.16071 0.01185 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 67 = 0.07463 0.00732 ## OptSubtree 1 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 8 21 8 / 37 = 0.21622 0.00286 ## TweakPhiSegment 1 4 1 / 7 = 0.14286 0.00000 ## TweakPsiSubtree 1 53 21 / 82 = 0.25610 0.00686 ## TweakPsiSegment 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSubtree 20 52 27 / 106 = 0.25472 0.01252 ## TweakPsiPhiSegment 7 22 7 / 43 = 0.16279 0.00658 ## TweakHbondSubtree 0 5 1 / 15 = 0.06667 0.00056 ## TweakHbondSegment 0 44 14 / 100 = 0.14000 0.00807 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 43 33 / 71 = 0.46479 0.00609 ## FixOmega 1 9 2 / 35 = 0.05714 0.00377 ## Backrub 7 1 0 / 2 = 0.00000 0.00000 ## BigBackrub 5 1 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 26 4 / 70 = 0.05714 0.00765 ## ClashingRotamer 0 4 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 9 13 1 / 66 = 0.01515 0.00069 ## ReduceBreak 0 8 4 / 236 = 0.01695 0.00783 ## CloseGap 0 54 19 / 578 = 0.03287 0.07100 ## HealGap 0 30 11 / 233 = 0.04721 0.00801 ## MoveGap 0 6 0 / 158 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 180 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 36 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 682 = 0.00587 0.00473 ## InsertFragment 0 11 4 / 197 = 0.02030 0.00278 ## TwoFragment 0 3 0 / 165 = 0.00000 0.00000 ## CrossOver 3 19 2 / 122 = 0.01639 0.00283 ## CrossAndInsert 7 6 3 / 209 = 0.01435 0.00486 ## ReduceClash 0 1 1 / 195 = 0.00513 0.00218 # generation 40: best score out of 20: T0506.try1 200.00632 cost/residue, 219 clashes 0.12553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 12 / 65 = 0.18462 0.01200 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 68 = 0.07353 0.00721 ## OptSubtree 1 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 0 0 / 32 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 9 21 8 / 38 = 0.21053 0.00278 ## TweakPhiSegment 1 4 1 / 7 = 0.14286 0.00000 ## TweakPsiSubtree 1 57 26 / 88 = 0.29545 0.00714 ## TweakPsiSegment 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSubtree 20 53 28 / 110 = 0.25455 0.01302 ## TweakPsiPhiSegment 7 24 9 / 45 = 0.20000 0.00910 ## TweakHbondSubtree 0 5 1 / 15 = 0.06667 0.00056 ## TweakHbondSegment 0 45 14 / 102 = 0.13725 0.00791 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 45 33 / 75 = 0.44000 0.00576 ## FixOmega 2 9 2 / 36 = 0.05556 0.00366 ## Backrub 7 2 1 / 3 = 0.33333 0.03069 ## BigBackrub 6 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 27 4 / 76 = 0.05263 0.00705 ## ClashingRotamer 0 4 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 9 13 1 / 68 = 0.01471 0.00067 ## ReduceBreak 0 8 4 / 242 = 0.01653 0.00763 ## CloseGap 0 54 19 / 586 = 0.03242 0.07004 ## HealGap 0 30 12 / 237 = 0.05063 0.00790 ## MoveGap 0 6 0 / 159 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 183 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 694 = 0.00576 0.00464 ## InsertFragment 0 11 4 / 200 = 0.02000 0.00274 ## TwoFragment 0 3 0 / 167 = 0.00000 0.00000 ## CrossOver 3 19 2 / 130 = 0.01538 0.00266 ## CrossAndInsert 7 6 3 / 210 = 0.01429 0.00484 ## ReduceClash 0 1 1 / 200 = 0.00500 0.00212 # generation 41: best score out of 20: T0506.try1 199.71860 cost/residue, 217 clashes 0.12553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 12 / 68 = 0.17647 0.01147 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 69 = 0.07246 0.00710 ## OptSubtree 1 0 0 / 36 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 9 21 8 / 38 = 0.21053 0.00278 ## TweakPhiSegment 1 4 1 / 7 = 0.14286 0.00000 ## TweakPsiSubtree 1 59 27 / 91 = 0.29670 0.00690 ## TweakPsiSegment 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSubtree 20 55 30 / 113 = 0.26549 0.01672 ## TweakPsiPhiSegment 10 28 12 / 50 = 0.24000 0.01002 ## TweakHbondSubtree 0 5 1 / 15 = 0.06667 0.00056 ## TweakHbondSegment 0 46 14 / 104 = 0.13462 0.00776 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 45 33 / 78 = 0.42308 0.00554 ## FixOmega 2 9 2 / 36 = 0.05556 0.00366 ## Backrub 24 3 2 / 7 = 0.28571 0.02832 ## BigBackrub 7 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 27 4 / 80 = 0.05000 0.00670 ## ClashingRotamer 0 4 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 9 13 1 / 69 = 0.01449 0.00066 ## ReduceBreak 0 8 4 / 245 = 0.01633 0.00754 ## CloseGap 0 54 19 / 599 = 0.03172 0.06852 ## HealGap 0 33 13 / 248 = 0.05242 0.00756 ## MoveGap 0 6 0 / 160 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 186 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 708 = 0.00565 0.00455 ## InsertFragment 0 11 4 / 203 = 0.01970 0.00270 ## TwoFragment 0 3 0 / 171 = 0.00000 0.00000 ## CrossOver 3 19 2 / 135 = 0.01481 0.00256 ## CrossAndInsert 7 6 3 / 216 = 0.01389 0.00471 ## ReduceClash 0 1 1 / 204 = 0.00490 0.00208 # generation 42: best score out of 20: T0506.try1 199.71446 cost/residue, 217 clashes 0.12553 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 12 / 73 = 0.16438 0.01069 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 71 = 0.07042 0.00690 ## OptSubtree 1 0 0 / 38 = 0.00000 0.00000 ## OptSegment 0 0 0 / 33 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 9 23 8 / 40 = 0.20000 0.00264 ## TweakPhiSegment 1 5 2 / 8 = 0.25000 0.00030 ## TweakPsiSubtree 1 62 28 / 97 = 0.28866 0.00652 ## TweakPsiSegment 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSubtree 22 57 33 / 120 = 0.27500 0.01637 ## TweakPsiPhiSegment 11 30 13 / 56 = 0.23214 0.00981 ## TweakHbondSubtree 0 5 1 / 15 = 0.06667 0.00056 ## TweakHbondSegment 0 47 14 / 109 = 0.12844 0.00740 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 47 36 / 84 = 0.42857 0.00533 ## FixOmega 2 9 2 / 39 = 0.05128 0.00338 ## Backrub 37 4 3 / 11 = 0.27273 0.02151 ## BigBackrub 7 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 27 4 / 81 = 0.04938 0.00661 ## ClashingRotamer 0 4 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 9 13 1 / 70 = 0.01429 0.00065 ## ReduceBreak 0 8 4 / 248 = 0.01613 0.00745 ## CloseGap 0 54 19 / 603 = 0.03151 0.06806 ## HealGap 0 33 13 / 258 = 0.05039 0.00727 ## MoveGap 0 6 0 / 165 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 188 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 717 = 0.00558 0.00450 ## InsertFragment 0 12 5 / 209 = 0.02392 0.00290 ## TwoFragment 0 3 0 / 174 = 0.00000 0.00000 ## CrossOver 3 19 2 / 135 = 0.01481 0.00256 ## CrossAndInsert 7 6 3 / 218 = 0.01376 0.00466 ## ReduceClash 0 1 1 / 207 = 0.00483 0.00205 # generation 43: best score out of 20: T0506.try1 199.69650 cost/residue, 217 clashes 0.12605 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 12 / 75 = 0.16000 0.01040 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 72 = 0.06944 0.00681 ## OptSubtree 1 0 0 / 39 = 0.00000 0.00000 ## OptSegment 0 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 10 23 8 / 40 = 0.20000 0.00264 ## TweakPhiSegment 2 7 3 / 11 = 0.27273 0.00022 ## TweakPsiSubtree 1 65 32 / 104 = 0.30769 0.00629 ## TweakPsiSegment 0 7 0 / 10 = 0.00000 0.00000 ## TweakPsiPhiSubtree 24 62 38 / 128 = 0.29688 0.01662 ## TweakPsiPhiSegment 13 31 13 / 62 = 0.20968 0.00886 ## TweakHbondSubtree 0 5 1 / 16 = 0.06250 0.00053 ## TweakHbondSegment 0 47 14 / 109 = 0.12844 0.00740 ## TweakMultimer 21 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 49 38 / 89 = 0.42697 0.00530 ## FixOmega 2 10 2 / 41 = 0.04878 0.00322 ## Backrub 43 4 3 / 12 = 0.25000 0.01972 ## BigBackrub 8 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 27 4 / 84 = 0.04762 0.00638 ## ClashingRotamer 0 4 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 10 13 1 / 70 = 0.01429 0.00065 ## ReduceBreak 0 8 4 / 251 = 0.01594 0.00736 ## CloseGap 0 54 19 / 611 = 0.03110 0.06717 ## HealGap 0 34 14 / 262 = 0.05344 0.00717 ## MoveGap 0 6 0 / 166 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 191 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 728 = 0.00549 0.00443 ## InsertFragment 0 12 5 / 211 = 0.02370 0.00287 ## TwoFragment 0 3 0 / 178 = 0.00000 0.00000 ## CrossOver 3 19 2 / 142 = 0.01408 0.00243 ## CrossAndInsert 7 6 3 / 225 = 0.01333 0.00452 ## ReduceClash 0 1 1 / 212 = 0.00472 0.00200 # generation 44: best score out of 20: T0506.try1 199.69348 cost/residue, 217 clashes 0.12605 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 14 / 80 = 0.17500 0.00980 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 9 5 / 77 = 0.06494 0.00637 ## OptSubtree 1 0 0 / 40 = 0.00000 0.00000 ## OptSegment 1 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 11 23 8 / 40 = 0.20000 0.00264 ## TweakPhiSegment 2 7 3 / 13 = 0.23077 0.00018 ## TweakPsiSubtree 1 68 34 / 110 = 0.30909 0.00615 ## TweakPsiSegment 0 7 0 / 11 = 0.00000 0.00000 ## TweakPsiPhiSubtree 25 63 39 / 135 = 0.28889 0.01598 ## TweakPsiPhiSegment 13 33 13 / 66 = 0.19697 0.00833 ## TweakHbondSubtree 0 5 1 / 16 = 0.06250 0.00053 ## TweakHbondSegment 0 47 14 / 109 = 0.12844 0.00740 ## TweakMultimer 23 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 50 39 / 91 = 0.42857 0.00519 ## FixOmega 2 10 2 / 42 = 0.04762 0.00314 ## Backrub 54 5 3 / 14 = 0.21429 0.01690 ## BigBackrub 8 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 27 4 / 87 = 0.04598 0.00616 ## ClashingRotamer 0 4 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 10 13 1 / 73 = 0.01370 0.00062 ## ReduceBreak 0 8 4 / 253 = 0.01581 0.00730 ## CloseGap 0 54 19 / 615 = 0.03089 0.06673 ## HealGap 0 36 14 / 274 = 0.05109 0.00686 ## MoveGap 0 6 0 / 167 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 197 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 740 = 0.00541 0.00436 ## InsertFragment 0 12 5 / 217 = 0.02304 0.00279 ## TwoFragment 0 3 0 / 178 = 0.00000 0.00000 ## CrossOver 3 19 2 / 145 = 0.01379 0.00238 ## CrossAndInsert 7 6 3 / 228 = 0.01316 0.00446 ## ReduceClash 0 1 1 / 219 = 0.00457 0.00194 # generation 45: best score out of 20: T0506.try1 199.60583 cost/residue, 217 clashes 0.12636 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 20 14 / 85 = 0.16471 0.00922 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 10 6 / 80 = 0.07500 0.00642 ## OptSubtree 1 0 0 / 40 = 0.00000 0.00000 ## OptSegment 1 0 0 / 35 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 11 23 8 / 40 = 0.20000 0.00264 ## TweakPhiSegment 2 9 3 / 15 = 0.20000 0.00016 ## TweakPsiSubtree 1 71 35 / 116 = 0.30172 0.00585 ## TweakPsiSegment 0 8 1 / 12 = 0.08333 0.00000 ## TweakPsiPhiSubtree 26 65 41 / 144 = 0.28472 0.01579 ## TweakPsiPhiSegment 16 35 15 / 73 = 0.20548 0.00770 ## TweakHbondSubtree 0 5 1 / 16 = 0.06250 0.00053 ## TweakHbondSegment 0 47 14 / 110 = 0.12727 0.00734 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 50 39 / 92 = 0.42391 0.00513 ## FixOmega 2 10 2 / 43 = 0.04651 0.00307 ## Backrub 68 5 3 / 16 = 0.18750 0.01479 ## BigBackrub 8 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 28 4 / 91 = 0.04396 0.00589 ## ClashingRotamer 0 4 0 / 40 = 0.00000 0.00000 ## ClusteredRotamer 10 13 1 / 74 = 0.01351 0.00062 ## ReduceBreak 0 8 4 / 259 = 0.01544 0.00713 ## CloseGap 0 54 19 / 622 = 0.03055 0.06598 ## HealGap 0 36 14 / 276 = 0.05072 0.00681 ## MoveGap 0 6 0 / 173 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 200 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 753 = 0.00531 0.00428 ## InsertFragment 0 12 5 / 221 = 0.02262 0.00274 ## TwoFragment 0 3 0 / 185 = 0.00000 0.00000 ## CrossOver 3 19 2 / 148 = 0.01351 0.00233 ## CrossAndInsert 7 6 3 / 230 = 0.01304 0.00442 ## ReduceClash 0 1 1 / 222 = 0.00450 0.00191 # generation 46: best score out of 20: T0506.try1 199.59801 cost/residue, 217 clashes 0.12636 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 14 / 89 = 0.15730 0.00881 ## JiggleSubtree 0 0 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 10 6 / 81 = 0.07407 0.00634 ## OptSubtree 1 0 0 / 41 = 0.00000 0.00000 ## OptSegment 1 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 11 24 9 / 42 = 0.21429 0.00307 ## TweakPhiSegment 2 9 3 / 16 = 0.18750 0.00015 ## TweakPsiSubtree 1 72 35 / 119 = 0.29412 0.00570 ## TweakPsiSegment 0 8 1 / 13 = 0.07692 0.00000 ## TweakPsiPhiSubtree 28 65 41 / 153 = 0.26797 0.01486 ## TweakPsiPhiSegment 16 36 15 / 77 = 0.19481 0.00730 ## TweakHbondSubtree 0 5 1 / 17 = 0.05882 0.00050 ## TweakHbondSegment 0 47 14 / 111 = 0.12613 0.00727 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 54 41 / 98 = 0.41837 0.00517 ## FixOmega 2 10 2 / 44 = 0.04545 0.00300 ## Backrub 76 6 3 / 18 = 0.16667 0.01315 ## BigBackrub 8 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 29 4 / 92 = 0.04348 0.00582 ## ClashingRotamer 0 4 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 10 13 1 / 76 = 0.01316 0.00060 ## ReduceBreak 0 8 4 / 263 = 0.01521 0.00702 ## CloseGap 0 54 19 / 630 = 0.03016 0.06514 ## HealGap 0 36 14 / 285 = 0.04912 0.00659 ## MoveGap 0 6 0 / 176 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 201 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 40 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 762 = 0.00525 0.00423 ## InsertFragment 0 12 5 / 226 = 0.02212 0.00268 ## TwoFragment 0 3 0 / 190 = 0.00000 0.00000 ## CrossOver 3 20 2 / 151 = 0.01325 0.00229 ## CrossAndInsert 7 6 3 / 237 = 0.01266 0.00429 ## ReduceClash 0 1 1 / 225 = 0.00444 0.00189 # generation 47: best score out of 20: T0506.try1 199.53009 cost/residue, 214 clashes 0.12636 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 14 / 96 = 0.14583 0.00817 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 10 6 / 82 = 0.07317 0.00626 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 15 = 0.00000 0.00000 ## TweakPhiSubtree 11 26 10 / 45 = 0.22222 0.00286 ## TweakPhiSegment 2 9 3 / 16 = 0.18750 0.00015 ## TweakPsiSubtree 1 73 35 / 123 = 0.28455 0.00552 ## TweakPsiSegment 0 9 2 / 14 = 0.14286 0.00007 ## TweakPsiPhiSubtree 30 66 43 / 158 = 0.27215 0.01448 ## TweakPsiPhiSegment 16 37 15 / 82 = 0.18293 0.00686 ## TweakHbondSubtree 0 5 1 / 17 = 0.05882 0.00050 ## TweakHbondSegment 0 47 14 / 116 = 0.12069 0.00696 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 57 43 / 101 = 0.42574 0.00502 ## FixOmega 2 10 2 / 45 = 0.04444 0.00293 ## Backrub 81 8 3 / 21 = 0.14286 0.01127 ## BigBackrub 8 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 30 5 / 94 = 0.05319 0.00650 ## ClashingRotamer 0 4 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 11 13 1 / 78 = 0.01282 0.00058 ## ReduceBreak 0 8 4 / 266 = 0.01504 0.00694 ## CloseGap 0 54 19 / 637 = 0.02983 0.06443 ## HealGap 0 36 14 / 290 = 0.04828 0.00648 ## MoveGap 0 6 0 / 182 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 203 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 776 = 0.00515 0.00415 ## InsertFragment 0 12 5 / 229 = 0.02183 0.00265 ## TwoFragment 0 3 0 / 190 = 0.00000 0.00000 ## CrossOver 3 20 2 / 156 = 0.01282 0.00221 ## CrossAndInsert 7 6 3 / 241 = 0.01245 0.00422 ## ReduceClash 0 1 1 / 231 = 0.00433 0.00184 # generation 48: best score out of 20: T0506.try1 199.52864 cost/residue, 214 clashes 0.12636 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 15 / 98 = 0.15306 0.00831 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 10 6 / 85 = 0.07059 0.00604 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 17 = 0.00000 0.00000 ## TweakPhiSubtree 11 28 10 / 47 = 0.21277 0.00274 ## TweakPhiSegment 2 9 3 / 16 = 0.18750 0.00015 ## TweakPsiSubtree 1 75 37 / 127 = 0.29134 0.00537 ## TweakPsiSegment 1 10 2 / 15 = 0.13333 0.00006 ## TweakPsiPhiSubtree 31 70 45 / 168 = 0.26786 0.01390 ## TweakPsiPhiSegment 16 38 15 / 86 = 0.17442 0.00654 ## TweakHbondSubtree 0 5 1 / 18 = 0.05556 0.00047 ## TweakHbondSegment 0 47 14 / 117 = 0.11966 0.00690 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 59 44 / 106 = 0.41509 0.00484 ## FixOmega 2 10 2 / 46 = 0.04348 0.00287 ## Backrub 87 8 3 / 21 = 0.14286 0.01127 ## BigBackrub 8 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 32 7 / 100 = 0.07000 0.00683 ## ClashingRotamer 0 4 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 11 13 1 / 78 = 0.01282 0.00058 ## ReduceBreak 0 8 4 / 271 = 0.01476 0.00681 ## CloseGap 0 54 19 / 644 = 0.02950 0.06373 ## HealGap 0 36 14 / 296 = 0.04730 0.00635 ## MoveGap 0 6 0 / 184 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 207 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 790 = 0.00506 0.00408 ## InsertFragment 0 12 5 / 233 = 0.02146 0.00260 ## TwoFragment 0 3 0 / 194 = 0.00000 0.00000 ## CrossOver 3 20 2 / 159 = 0.01258 0.00217 ## CrossAndInsert 8 6 3 / 243 = 0.01235 0.00418 ## ReduceClash 0 1 1 / 237 = 0.00422 0.00179 # generation 49: best score out of 20: T0506.try1 199.50966 cost/residue, 215 clashes 0.12636 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 15 / 100 = 0.15000 0.00815 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 10 6 / 88 = 0.06818 0.00583 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 11 28 11 / 49 = 0.22449 0.00263 ## TweakPhiSegment 2 10 4 / 18 = 0.22222 0.00013 ## TweakPsiSubtree 1 75 37 / 130 = 0.28462 0.00524 ## TweakPsiSegment 1 10 2 / 15 = 0.13333 0.00006 ## TweakPsiPhiSubtree 32 75 47 / 178 = 0.26404 0.01320 ## TweakPsiPhiSegment 18 41 17 / 92 = 0.18478 0.00743 ## TweakHbondSubtree 0 5 1 / 19 = 0.05263 0.00044 ## TweakHbondSegment 0 47 14 / 117 = 0.11966 0.00690 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 59 44 / 108 = 0.40741 0.00475 ## FixOmega 2 10 2 / 47 = 0.04255 0.00281 ## Backrub 87 8 3 / 23 = 0.13043 0.01029 ## BigBackrub 8 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 33 7 / 105 = 0.06667 0.00651 ## ClashingRotamer 0 4 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 11 14 2 / 81 = 0.02469 0.00080 ## ReduceBreak 0 8 4 / 276 = 0.01449 0.00669 ## CloseGap 0 54 19 / 648 = 0.02932 0.06333 ## HealGap 0 37 14 / 300 = 0.04667 0.00626 ## MoveGap 0 6 0 / 187 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 208 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 803 = 0.00498 0.00401 ## InsertFragment 0 12 5 / 235 = 0.02128 0.00258 ## TwoFragment 0 3 0 / 197 = 0.00000 0.00000 ## CrossOver 3 20 2 / 161 = 0.01242 0.00214 ## CrossAndInsert 8 6 3 / 250 = 0.01200 0.00407 ## ReduceClash 0 1 1 / 245 = 0.00408 0.00173 # generation 50: best score out of 20: T0506.try1 199.42300 cost/residue, 215 clashes 0.12691 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 23 16 / 103 = 0.15534 0.00827 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 10 6 / 89 = 0.06742 0.00577 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 1 / 38 = 0.02632 0.00014 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 11 31 12 / 55 = 0.21818 0.00234 ## TweakPhiSegment 2 10 4 / 20 = 0.20000 0.00012 ## TweakPsiSubtree 1 78 38 / 138 = 0.27536 0.00543 ## TweakPsiSegment 1 11 3 / 17 = 0.17647 0.00010 ## TweakPsiPhiSubtree 33 78 51 / 189 = 0.26984 0.01295 ## TweakPsiPhiSegment 18 41 17 / 94 = 0.18085 0.00727 ## TweakHbondSubtree 0 6 1 / 21 = 0.04762 0.00040 ## TweakHbondSegment 0 48 15 / 121 = 0.12397 0.00739 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 62 48 / 112 = 0.42857 0.00480 ## FixOmega 2 10 2 / 47 = 0.04255 0.00281 ## Backrub 91 8 3 / 24 = 0.12500 0.00986 ## BigBackrub 9 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 33 7 / 108 = 0.06481 0.00633 ## ClashingRotamer 0 4 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 12 14 2 / 83 = 0.02410 0.00078 ## ReduceBreak 0 8 4 / 283 = 0.01413 0.00653 ## CloseGap 0 54 19 / 659 = 0.02883 0.06228 ## HealGap 0 37 14 / 303 = 0.04620 0.00620 ## MoveGap 0 6 0 / 190 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 209 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 812 = 0.00493 0.00397 ## InsertFragment 0 12 5 / 237 = 0.02110 0.00256 ## TwoFragment 0 3 0 / 197 = 0.00000 0.00000 ## CrossOver 3 20 2 / 165 = 0.01212 0.00209 ## CrossAndInsert 8 6 3 / 253 = 0.01186 0.00402 ## ReduceClash 0 1 1 / 250 = 0.00400 0.00170 # generation 51: best score out of 20: T0506.try1 199.42175 cost/residue, 215 clashes 0.12636 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 18 / 109 = 0.16514 0.00810 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 10 6 / 90 = 0.06667 0.00570 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 1 / 39 = 0.02564 0.00014 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 11 31 12 / 57 = 0.21053 0.00226 ## TweakPhiSegment 2 10 4 / 20 = 0.20000 0.00012 ## TweakPsiSubtree 1 78 38 / 138 = 0.27536 0.00543 ## TweakPsiSegment 1 11 3 / 17 = 0.17647 0.00010 ## TweakPsiPhiSubtree 34 81 52 / 201 = 0.25871 0.01262 ## TweakPsiPhiSegment 19 42 17 / 99 = 0.17172 0.00690 ## TweakHbondSubtree 0 7 1 / 22 = 0.04545 0.00038 ## TweakHbondSegment 0 50 16 / 128 = 0.12500 0.00757 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 64 48 / 115 = 0.41739 0.00468 ## FixOmega 2 10 2 / 48 = 0.04167 0.00275 ## Backrub 98 8 3 / 27 = 0.11111 0.00877 ## BigBackrub 9 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 33 7 / 113 = 0.06195 0.00605 ## ClashingRotamer 0 4 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 12 14 2 / 84 = 0.02381 0.00077 ## ReduceBreak 0 8 4 / 285 = 0.01404 0.00648 ## CloseGap 0 54 19 / 663 = 0.02866 0.06190 ## HealGap 0 38 15 / 308 = 0.04870 0.00616 ## MoveGap 0 6 0 / 196 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 215 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 818 = 0.00489 0.00394 ## InsertFragment 0 12 5 / 239 = 0.02092 0.00254 ## TwoFragment 0 3 0 / 203 = 0.00000 0.00000 ## CrossOver 3 20 2 / 168 = 0.01190 0.00205 ## CrossAndInsert 8 6 3 / 258 = 0.01163 0.00394 ## ReduceClash 0 1 1 / 254 = 0.00394 0.00167 # generation 52: best score out of 20: T0506.try1 198.48720 cost/residue, 228 clashes 0.11827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 21 / 112 = 0.18750 0.00869 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 12 8 / 98 = 0.08163 0.00710 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 1 / 39 = 0.02564 0.00014 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 12 31 12 / 57 = 0.21053 0.00226 ## TweakPhiSegment 2 11 5 / 23 = 0.21739 0.00011 ## TweakPsiSubtree 1 79 39 / 141 = 0.27660 0.00540 ## TweakPsiSegment 1 11 4 / 19 = 0.21053 0.00056 ## TweakPsiPhiSubtree 34 82 53 / 209 = 0.25359 0.01216 ## TweakPsiPhiSegment 19 44 19 / 105 = 0.18095 0.00696 ## TweakHbondSubtree 0 7 1 / 22 = 0.04545 0.00038 ## TweakHbondSegment 0 50 16 / 132 = 0.12121 0.00734 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 66 51 / 121 = 0.42149 0.00486 ## FixOmega 3 10 2 / 51 = 0.03922 0.00259 ## Backrub 102 8 3 / 27 = 0.11111 0.00877 ## BigBackrub 9 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 34 8 / 117 = 0.06838 0.00673 ## ClashingRotamer 0 4 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 13 16 4 / 88 = 0.04545 0.00368 ## ReduceBreak 0 8 4 / 289 = 0.01384 0.00639 ## CloseGap 0 54 19 / 667 = 0.02849 0.06153 ## HealGap 0 39 18 / 316 = 0.05696 0.00614 ## MoveGap 0 6 0 / 196 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 220 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 826 = 0.00484 0.00390 ## InsertFragment 0 12 5 / 241 = 0.02075 0.00252 ## TwoFragment 0 3 0 / 203 = 0.00000 0.00000 ## CrossOver 3 22 3 / 171 = 0.01754 0.00202 ## CrossAndInsert 8 6 3 / 267 = 0.01124 0.00381 ## ReduceClash 0 2 2 / 256 = 0.00781 0.00532 # generation 53: best score out of 20: T0506.try1 198.47169 cost/residue, 228 clashes 0.11827 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 21 / 116 = 0.18103 0.00839 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 0 14 9 / 101 = 0.08911 0.00731 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 1 / 40 = 0.02500 0.00013 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 12 31 12 / 57 = 0.21053 0.00226 ## TweakPhiSegment 2 11 5 / 23 = 0.21739 0.00011 ## TweakPsiSubtree 1 80 40 / 146 = 0.27397 0.00523 ## TweakPsiSegment 1 12 4 / 25 = 0.16000 0.00043 ## TweakPsiPhiSubtree 34 88 55 / 220 = 0.25000 0.01162 ## TweakPsiPhiSegment 19 44 20 / 108 = 0.18519 0.00685 ## TweakHbondSubtree 0 7 1 / 22 = 0.04545 0.00038 ## TweakHbondSegment 0 50 16 / 133 = 0.12030 0.00729 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 68 54 / 126 = 0.42857 0.00516 ## FixOmega 3 10 2 / 51 = 0.03922 0.00259 ## Backrub 104 9 3 / 28 = 0.10714 0.00845 ## BigBackrub 9 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 36 8 / 121 = 0.06612 0.00651 ## ClashingRotamer 0 4 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 15 17 4 / 95 = 0.04211 0.00341 ## ReduceBreak 0 8 4 / 293 = 0.01365 0.00630 ## CloseGap 0 54 19 / 674 = 0.02819 0.06089 ## HealGap 0 39 18 / 322 = 0.05590 0.00603 ## MoveGap 0 6 0 / 198 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 222 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 833 = 0.00480 0.00387 ## InsertFragment 0 12 5 / 245 = 0.02041 0.00248 ## TwoFragment 0 3 0 / 204 = 0.00000 0.00000 ## CrossOver 3 22 3 / 171 = 0.01754 0.00202 ## CrossAndInsert 8 6 3 / 270 = 0.01111 0.00376 ## ReduceClash 0 2 2 / 267 = 0.00749 0.00510 # generation 54: best score out of 20: T0506.try1 198.39413 cost/residue, 229 clashes 0.11907 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 30 21 / 123 = 0.17073 0.00791 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 1 14 9 / 103 = 0.08738 0.00717 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 1 / 42 = 0.02381 0.00013 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 18 = 0.00000 0.00000 ## TweakPhiSubtree 12 31 12 / 57 = 0.21053 0.00226 ## TweakPhiSegment 2 11 5 / 23 = 0.21739 0.00011 ## TweakPsiSubtree 1 81 40 / 148 = 0.27027 0.00516 ## TweakPsiSegment 1 12 4 / 25 = 0.16000 0.00043 ## TweakPsiPhiSubtree 34 89 55 / 222 = 0.24775 0.01152 ## TweakPsiPhiSegment 20 47 21 / 113 = 0.18584 0.00748 ## TweakHbondSubtree 0 7 1 / 24 = 0.04167 0.00035 ## TweakHbondSegment 0 51 16 / 137 = 0.11679 0.00708 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 71 58 / 134 = 0.43284 0.00514 ## FixOmega 3 10 2 / 51 = 0.03922 0.00259 ## Backrub 105 9 3 / 30 = 0.10000 0.00789 ## BigBackrub 9 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 37 9 / 127 = 0.07087 0.00626 ## ClashingRotamer 0 4 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 17 17 4 / 102 = 0.03922 0.00318 ## ReduceBreak 0 8 4 / 296 = 0.01351 0.00624 ## CloseGap 0 54 19 / 679 = 0.02798 0.06044 ## HealGap 0 39 18 / 325 = 0.05538 0.00597 ## MoveGap 0 6 0 / 200 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 226 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 844 = 0.00474 0.00382 ## InsertFragment 0 12 5 / 252 = 0.01984 0.00241 ## TwoFragment 0 3 0 / 206 = 0.00000 0.00000 ## CrossOver 3 22 3 / 173 = 0.01734 0.00200 ## CrossAndInsert 8 6 3 / 273 = 0.01099 0.00372 ## ReduceClash 0 2 2 / 275 = 0.00727 0.00495 # generation 55: best score out of 20: T0506.try1 198.39052 cost/residue, 229 clashes 0.11907 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 22 / 124 = 0.17742 0.00809 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 1 14 9 / 108 = 0.08333 0.00684 ## OptSubtree 1 0 0 / 42 = 0.00000 0.00000 ## OptSegment 1 0 1 / 45 = 0.02222 0.00012 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 13 31 12 / 58 = 0.20690 0.00222 ## TweakPhiSegment 2 11 5 / 23 = 0.21739 0.00011 ## TweakPsiSubtree 1 82 41 / 151 = 0.27152 0.00508 ## TweakPsiSegment 1 13 4 / 26 = 0.15385 0.00041 ## TweakPsiPhiSubtree 34 91 56 / 228 = 0.24561 0.01138 ## TweakPsiPhiSegment 20 50 23 / 119 = 0.19328 0.00736 ## TweakHbondSubtree 0 7 1 / 24 = 0.04167 0.00035 ## TweakHbondSegment 0 53 18 / 143 = 0.12587 0.00720 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 72 60 / 136 = 0.44118 0.00513 ## FixOmega 3 10 2 / 52 = 0.03846 0.00254 ## Backrub 105 9 3 / 31 = 0.09677 0.00763 ## BigBackrub 10 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 37 9 / 130 = 0.06923 0.00611 ## ClashingRotamer 0 4 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 19 17 4 / 110 = 0.03636 0.00295 ## ReduceBreak 0 8 4 / 299 = 0.01338 0.00618 ## CloseGap 0 54 19 / 687 = 0.02766 0.05974 ## HealGap 0 40 18 / 329 = 0.05471 0.00590 ## MoveGap 0 6 0 / 202 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 228 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 853 = 0.00469 0.00378 ## InsertFragment 0 12 5 / 257 = 0.01946 0.00236 ## TwoFragment 0 3 0 / 207 = 0.00000 0.00000 ## CrossOver 3 22 3 / 174 = 0.01724 0.00199 ## CrossAndInsert 8 6 3 / 275 = 0.01091 0.00370 ## ReduceClash 0 2 2 / 289 = 0.00692 0.00471 Error: Colinear points for locating spot monomeric-50pc-wet-6.5.spot for (T0506)Y130 Error: Colinear points for locating spot monomeric-50pc-wet-6.5.spot for (T0506)Y130 # generation 56: best score out of 20: T0506.try1 198.35207 cost/residue, 229 clashes 0.11950 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 31 22 / 128 = 0.17188 0.00784 ## JiggleSubtree 0 0 0 / 7 = 0.00000 0.00000 ## JiggleSegment 1 14 9 / 110 = 0.08182 0.00672 ## OptSubtree 1 0 0 / 43 = 0.00000 0.00000 ## OptSegment 1 0 1 / 45 = 0.02222 0.00012 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 13 32 12 / 59 = 0.20339 0.00218 ## TweakPhiSegment 2 12 5 / 24 = 0.20833 0.00010 ## TweakPsiSubtree 1 84 41 / 154 = 0.26623 0.00498 ## TweakPsiSegment 1 14 5 / 27 = 0.18519 0.00040 ## TweakPsiPhiSubtree 36 92 56 / 232 = 0.24138 0.01118 ## TweakPsiPhiSegment 20 53 25 / 125 = 0.20000 0.00734 ## TweakHbondSubtree 0 7 1 / 24 = 0.04167 0.00035 ## TweakHbondSegment 0 54 18 / 150 = 0.12000 0.00687 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 73 60 / 140 = 0.42857 0.00498 ## FixOmega 3 10 2 / 53 = 0.03774 0.00249 ## Backrub 109 9 3 / 31 = 0.09677 0.00763 ## BigBackrub 10 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 37 9 / 133 = 0.06767 0.00598 ## ClashingRotamer 0 4 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 19 17 4 / 113 = 0.03540 0.00287 ## ReduceBreak 0 8 4 / 301 = 0.01329 0.00614 ## CloseGap 0 54 19 / 688 = 0.02762 0.05965 ## HealGap 0 41 19 / 335 = 0.05672 0.00580 ## MoveGap 0 6 0 / 206 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 233 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 863 = 0.00463 0.00373 ## InsertFragment 0 12 5 / 261 = 0.01916 0.00232 ## TwoFragment 0 3 0 / 212 = 0.00000 0.00000 ## CrossOver 3 22 3 / 180 = 0.01667 0.00192 ## CrossAndInsert 8 6 3 / 278 = 0.01079 0.00366 ## ReduceClash 0 2 2 / 302 = 0.00662 0.00451 # generation 57: best score out of 20: T0506.try1 198.19551 cost/residue, 229 clashes 0.12006 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 23 / 137 = 0.16788 0.00818 ## JiggleSubtree 0 1 1 / 8 = 0.12500 0.00876 ## JiggleSegment 1 14 9 / 113 = 0.07965 0.00654 ## OptSubtree 1 0 0 / 43 = 0.00000 0.00000 ## OptSegment 1 0 1 / 45 = 0.02222 0.00012 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 13 33 12 / 60 = 0.20000 0.00215 ## TweakPhiSegment 2 12 5 / 24 = 0.20833 0.00010 ## TweakPsiSubtree 1 85 42 / 156 = 0.26923 0.00492 ## TweakPsiSegment 1 15 6 / 30 = 0.20000 0.00039 ## TweakPsiPhiSubtree 36 93 57 / 236 = 0.24153 0.01165 ## TweakPsiPhiSegment 20 54 26 / 133 = 0.19549 0.00749 ## TweakHbondSubtree 0 7 1 / 24 = 0.04167 0.00035 ## TweakHbondSegment 0 54 18 / 153 = 0.11765 0.00673 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 73 60 / 143 = 0.41958 0.00488 ## FixOmega 3 10 2 / 53 = 0.03774 0.00249 ## Backrub 110 9 3 / 32 = 0.09375 0.00740 ## BigBackrub 10 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 38 10 / 136 = 0.07353 0.00601 ## ClashingRotamer 0 4 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 21 17 4 / 118 = 0.03390 0.00275 ## ReduceBreak 0 8 4 / 303 = 0.01320 0.00610 ## CloseGap 0 54 19 / 696 = 0.02730 0.05897 ## HealGap 0 42 20 / 341 = 0.05865 0.00571 ## MoveGap 0 6 0 / 209 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 236 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 871 = 0.00459 0.00370 ## InsertFragment 0 12 5 / 261 = 0.01916 0.00232 ## TwoFragment 0 3 0 / 216 = 0.00000 0.00000 ## CrossOver 3 23 4 / 184 = 0.02174 0.00198 ## CrossAndInsert 9 6 3 / 281 = 0.01068 0.00362 ## ReduceClash 0 2 2 / 313 = 0.00639 0.00435 # generation 58: best score out of 20: T0506.try1 198.15799 cost/residue, 219 clashes 0.12180 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 35 23 / 139 = 0.16547 0.00806 ## JiggleSubtree 1 4 3 / 33 = 0.09091 0.00958 ## JiggleSegment 1 14 9 / 119 = 0.07563 0.00621 ## OptSubtree 1 0 0 / 45 = 0.00000 0.00000 ## OptSegment 1 0 1 / 46 = 0.02174 0.00012 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 13 34 12 / 62 = 0.19355 0.00208 ## TweakPhiSegment 2 12 5 / 24 = 0.20833 0.00010 ## TweakPsiSubtree 1 86 43 / 158 = 0.27215 0.00486 ## TweakPsiSegment 1 16 7 / 34 = 0.20588 0.00041 ## TweakPsiPhiSubtree 36 93 57 / 238 = 0.23950 0.01156 ## TweakPsiPhiSegment 20 56 26 / 138 = 0.18841 0.00722 ## TweakHbondSubtree 0 7 1 / 24 = 0.04167 0.00035 ## TweakHbondSegment 0 54 18 / 154 = 0.11688 0.00669 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 74 61 / 144 = 0.42361 0.00489 ## FixOmega 3 10 2 / 53 = 0.03774 0.00249 ## Backrub 114 9 3 / 33 = 0.09091 0.00717 ## BigBackrub 11 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 38 10 / 137 = 0.07299 0.00597 ## ClashingRotamer 0 4 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 21 17 4 / 121 = 0.03306 0.00268 ## ReduceBreak 0 8 4 / 305 = 0.01311 0.00606 ## CloseGap 0 54 19 / 700 = 0.02714 0.05863 ## HealGap 0 43 20 / 346 = 0.05780 0.00562 ## MoveGap 0 6 0 / 213 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 237 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 882 = 0.00454 0.00365 ## InsertFragment 0 12 5 / 263 = 0.01901 0.00231 ## TwoFragment 0 3 0 / 216 = 0.00000 0.00000 ## CrossOver 3 24 5 / 186 = 0.02688 0.00202 ## CrossAndInsert 9 6 3 / 284 = 0.01056 0.00358 ## ReduceClash 0 2 2 / 320 = 0.00625 0.00425 # generation 59: best score out of 20: T0506.try1 198.08315 cost/residue, 232 clashes 0.12142 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 39 24 / 145 = 0.16552 0.00826 ## JiggleSubtree 1 4 3 / 41 = 0.07317 0.00771 ## JiggleSegment 1 14 9 / 122 = 0.07377 0.00606 ## OptSubtree 1 0 0 / 46 = 0.00000 0.00000 ## OptSegment 1 0 1 / 47 = 0.02128 0.00011 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 19 = 0.00000 0.00000 ## TweakPhiSubtree 13 34 12 / 63 = 0.19048 0.00205 ## TweakPhiSegment 2 12 6 / 25 = 0.24000 0.00107 ## TweakPsiSubtree 1 87 44 / 161 = 0.27329 0.00482 ## TweakPsiSegment 1 16 7 / 35 = 0.20000 0.00040 ## TweakPsiPhiSubtree 36 95 59 / 244 = 0.24180 0.01229 ## TweakPsiPhiSegment 22 59 29 / 145 = 0.20000 0.00734 ## TweakHbondSubtree 0 7 1 / 24 = 0.04167 0.00035 ## TweakHbondSegment 0 54 18 / 155 = 0.11613 0.00665 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 75 61 / 146 = 0.41781 0.00482 ## FixOmega 3 10 2 / 54 = 0.03704 0.00244 ## Backrub 118 9 3 / 33 = 0.09091 0.00717 ## BigBackrub 11 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 39 10 / 139 = 0.07194 0.00588 ## ClashingRotamer 0 4 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 21 17 4 / 125 = 0.03200 0.00259 ## ReduceBreak 0 8 4 / 308 = 0.01299 0.00600 ## CloseGap 0 54 19 / 705 = 0.02695 0.05821 ## HealGap 0 44 20 / 355 = 0.05634 0.00548 ## MoveGap 0 6 0 / 215 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 237 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 892 = 0.00448 0.00361 ## InsertFragment 0 12 5 / 265 = 0.01887 0.00229 ## TwoFragment 0 3 0 / 219 = 0.00000 0.00000 ## CrossOver 3 24 5 / 189 = 0.02646 0.00199 ## CrossAndInsert 9 6 3 / 288 = 0.01042 0.00353 ## ReduceClash 0 2 2 / 330 = 0.00606 0.00412 # generation 60: best score out of 20: T0506.try1 198.01106 cost/residue, 219 clashes 0.12232 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 41 26 / 152 = 0.17105 0.00813 ## JiggleSubtree 1 4 3 / 45 = 0.06667 0.00703 ## JiggleSegment 1 14 9 / 129 = 0.06977 0.00573 ## OptSubtree 1 0 0 / 46 = 0.00000 0.00000 ## OptSegment 1 0 1 / 48 = 0.02083 0.00011 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 20 = 0.00000 0.00000 ## TweakPhiSubtree 13 35 12 / 65 = 0.18462 0.00198 ## TweakPhiSegment 2 15 9 / 31 = 0.29032 0.00157 ## TweakPsiSubtree 1 87 45 / 162 = 0.27778 0.00480 ## TweakPsiSegment 1 16 8 / 36 = 0.22222 0.00046 ## TweakPsiPhiSubtree 36 98 61 / 252 = 0.24206 0.01303 ## TweakPsiPhiSegment 26 61 31 / 154 = 0.20130 0.00747 ## TweakHbondSubtree 0 7 1 / 25 = 0.04000 0.00034 ## TweakHbondSegment 0 56 19 / 157 = 0.12102 0.00667 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 75 61 / 148 = 0.41216 0.00476 ## FixOmega 3 10 2 / 54 = 0.03704 0.00244 ## Backrub 120 9 3 / 33 = 0.09091 0.00717 ## BigBackrub 11 1 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 40 11 / 141 = 0.07801 0.00676 ## ClashingRotamer 0 4 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 21 17 4 / 125 = 0.03200 0.00259 ## ReduceBreak 0 8 4 / 309 = 0.01294 0.00598 ## CloseGap 0 55 20 / 710 = 0.02817 0.05785 ## HealGap 0 45 21 / 361 = 0.05817 0.00540 ## MoveGap 0 6 0 / 218 = 0.00000 0.00000 ## ReduceConstraint 0 2 0 / 238 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 48 = 0.00000 0.00000 ## InsertSpecificFragment 0 13 4 / 901 = 0.00444 0.00358 ## InsertFragment 0 12 5 / 267 = 0.01873 0.00227 ## TwoFragment 0 3 0 / 220 = 0.00000 0.00000 ## CrossOver 3 24 5 / 194 = 0.02577 0.00194 ## CrossAndInsert 10 6 3 / 291 = 0.01031 0.00349 ## ReduceClash 0 2 2 / 338 = 0.00592 0.00403 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1350616208.pdb -s /var/tmp/to_scwrl_1350616208.seq -o /var/tmp/from_scwrl_1350616208.pdb > /var/tmp/scwrl_1350616208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350616208.pdb # T0506.try1-scwrl 196.25570 cost/residue 209 clashes 0.12230 breaks # iteration 1 # filling pool to have 20 conformations # best score in initial pool out of 20: T0506.try1 at pool[9] 210.83521 cost/residue, 277 clashes 0.24989 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0506.try1 210.80844 cost/residue, 277 clashes 0.24989 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 1 = 1.00000 0.02676 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 1 = 1.00000 0.00494 ## TweakPsiPhiSubtree 0 1 1 / 1 = 1.00000 0.04120 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 0 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 0 / 0 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 1 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 0 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 1 = 0.00000 0.00000 ## ClusteredRotamer 0 0 0 / 2 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 2 = 0.00000 0.00000 ## CloseGap 0 0 1 / 6 = 0.16667 0.11891 ## HealGap 0 2 0 / 7 = 0.00000 0.00000 ## MoveGap 0 1 1 / 7 = 0.14286 0.19673 ## ReduceConstraint 0 1 0 / 7 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 25 = 0.00000 0.00000 ## InsertFragment 0 1 1 / 6 = 0.16667 0.03689 ## TwoFragment 0 0 0 / 8 = 0.00000 0.00000 ## CrossOver 1 0 0 / 1 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 8 = 0.00000 0.00000 ## ReduceClash 0 0 0 / 5 = 0.00000 0.00000 # generation 2: best score out of 20: T0506.try1 207.53859 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.01338 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 3 = 0.00000 0.00000 ## OptSegment 0 0 0 / 5 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 2 2 / 3 = 0.66667 0.00375 ## TweakPsiPhiSubtree 0 1 2 / 2 = 1.00000 0.03242 ## TweakPsiPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 1 / 1 = 1.00000 0.00790 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 1 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 1 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 6 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 5 = 0.00000 0.00000 ## CloseGap 0 2 3 / 14 = 0.21429 0.51808 ## HealGap 0 3 0 / 11 = 0.00000 0.00000 ## MoveGap 0 3 3 / 19 = 0.15789 0.21959 ## ReduceConstraint 0 1 0 / 12 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 1 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 50 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 15 = 0.06667 0.01476 ## TwoFragment 0 0 0 / 14 = 0.00000 0.00000 ## CrossOver 1 0 0 / 2 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 12 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 9 = 0.00000 0.00000 # generation 3: best score out of 20: T0506.try1 207.44748 cost/residue, 283 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 1 / 2 = 0.50000 0.01338 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 2 2 / 3 = 0.66667 0.00375 ## TweakPsiPhiSubtree 0 1 2 / 2 = 1.00000 0.03242 ## TweakPsiPhiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 0 1 / 1 = 1.00000 0.00790 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 2 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 2 0 / 2 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 2 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 0 0 / 14 = 0.00000 0.00000 ## CloseGap 0 3 4 / 23 = 0.17391 0.45766 ## HealGap 0 5 0 / 13 = 0.00000 0.00000 ## MoveGap 0 5 3 / 28 = 0.10714 0.14901 ## ReduceConstraint 0 1 0 / 18 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 0 0 / 68 = 0.00000 0.00000 ## InsertFragment 0 2 1 / 22 = 0.04545 0.01006 ## TwoFragment 0 0 0 / 22 = 0.00000 0.00000 ## CrossOver 1 2 1 / 10 = 0.10000 0.02099 ## CrossAndInsert 0 1 0 / 16 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 14 = 0.00000 0.00000 # generation 4: best score out of 20: T0506.try1 207.18736 cost/residue, 279 clashes 0.17991 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 1 / 3 = 0.33333 0.00892 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 4 1 / 4 = 0.25000 0.00002 ## TweakPsiSegment 0 4 4 / 6 = 0.66667 0.04606 ## TweakPsiPhiSubtree 0 1 2 / 2 = 1.00000 0.03242 ## TweakPsiPhiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 3 / 3 = 1.00000 0.00986 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 3 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 4 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 19 = 0.00000 0.00000 ## CloseGap 0 3 4 / 31 = 0.12903 0.33956 ## HealGap 0 5 0 / 18 = 0.00000 0.00000 ## MoveGap 0 5 3 / 37 = 0.08108 0.11276 ## ReduceConstraint 0 1 0 / 21 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 100 = 0.00000 0.00000 ## InsertFragment 0 3 1 / 25 = 0.04000 0.00885 ## TwoFragment 0 0 0 / 27 = 0.00000 0.00000 ## CrossOver 2 3 2 / 13 = 0.15385 0.02830 ## CrossAndInsert 0 1 0 / 23 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 17 = 0.00000 0.00000 # generation 5: best score out of 20: T0506.try1 205.40927 cost/residue, 251 clashes 0.17615 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 1 / 4 = 0.25000 0.00669 ## JiggleSubtree 0 0 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 6 = 0.33333 0.00026 ## TweakPsiSegment 0 4 4 / 7 = 0.57143 0.03948 ## TweakPsiPhiSubtree 0 3 4 / 5 = 0.80000 0.02800 ## TweakPsiPhiSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 3 / 5 = 0.60000 0.00591 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 3 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 23 = 0.00000 0.00000 ## CloseGap 0 5 4 / 44 = 0.09091 0.23923 ## HealGap 0 7 2 / 21 = 0.09524 0.02401 ## MoveGap 0 5 3 / 42 = 0.07143 0.09934 ## ReduceConstraint 0 3 2 / 29 = 0.06897 0.03661 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 6 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 120 = 0.00000 0.00000 ## InsertFragment 0 4 2 / 35 = 0.05714 0.00915 ## TwoFragment 0 0 0 / 32 = 0.00000 0.00000 ## CrossOver 2 3 2 / 18 = 0.11111 0.02044 ## CrossAndInsert 0 1 0 / 28 = 0.00000 0.00000 ## ReduceClash 0 2 1 / 24 = 0.04167 0.08493 # generation 6: best score out of 20: T0506.try1 205.23410 cost/residue, 250 clashes 0.17686 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 5 = 0.20000 0.00535 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 7 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 1 0 / 2 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 7 = 0.28571 0.00023 ## TweakPsiSegment 0 6 5 / 9 = 0.55556 0.03115 ## TweakPsiPhiSubtree 0 5 4 / 7 = 0.57143 0.02000 ## TweakPsiPhiSegment 0 1 1 / 3 = 0.33333 0.05839 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 5 = 0.60000 0.00591 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 3 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 8 = 0.00000 0.00000 ## ClusteredRotamer 0 3 0 / 8 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 29 = 0.00000 0.00000 ## CloseGap 0 7 4 / 53 = 0.07547 0.19861 ## HealGap 0 7 2 / 28 = 0.07143 0.01800 ## MoveGap 0 5 3 / 49 = 0.06122 0.08515 ## ReduceConstraint 0 4 3 / 35 = 0.08571 0.04910 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 139 = 0.00000 0.00000 ## InsertFragment 0 5 3 / 39 = 0.07692 0.01594 ## TwoFragment 0 0 0 / 39 = 0.00000 0.00000 ## CrossOver 2 4 2 / 20 = 0.10000 0.01840 ## CrossAndInsert 0 1 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 2 1 / 35 = 0.02857 0.05823 # generation 7: best score out of 20: T0506.try1 204.98355 cost/residue, 250 clashes 0.17564 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 5 = 0.20000 0.00535 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 4 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 3 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 8 = 0.25000 0.00020 ## TweakPsiSegment 0 10 7 / 13 = 0.53846 0.02173 ## TweakPsiPhiSubtree 1 5 5 / 9 = 0.55556 0.02340 ## TweakPsiPhiSegment 0 4 2 / 9 = 0.22222 0.02570 ## TweakHbondSubtree 0 0 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 3 3 / 6 = 0.50000 0.00493 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 4 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 12 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 32 = 0.00000 0.00000 ## CloseGap 0 7 4 / 60 = 0.06667 0.17544 ## HealGap 0 10 3 / 33 = 0.09091 0.02287 ## MoveGap 0 5 3 / 55 = 0.05455 0.07586 ## ReduceConstraint 0 4 3 / 43 = 0.06977 0.03997 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 11 = 0.00000 0.00000 ## InsertSpecificFragment 0 1 0 / 156 = 0.00000 0.00000 ## InsertFragment 0 5 3 / 45 = 0.06667 0.01381 ## TwoFragment 0 0 0 / 47 = 0.00000 0.00000 ## CrossOver 2 4 2 / 22 = 0.09091 0.01672 ## CrossAndInsert 0 1 0 / 37 = 0.00000 0.00000 ## ReduceClash 0 2 1 / 44 = 0.02273 0.04632 # generation 8: best score out of 20: T0506.try1 204.98355 cost/residue, 250 clashes 0.17564 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 5 = 0.20000 0.00535 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 5 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 8 = 0.25000 0.00020 ## TweakPsiSegment 0 12 9 / 16 = 0.56250 0.01886 ## TweakPsiPhiSubtree 1 6 5 / 10 = 0.50000 0.02106 ## TweakPsiPhiSegment 0 4 2 / 9 = 0.22222 0.02570 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 3 / 9 = 0.33333 0.00329 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 4 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 7 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 0 4 0 / 12 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 36 = 0.00000 0.00000 ## CloseGap 0 7 4 / 68 = 0.05882 0.15480 ## HealGap 0 12 4 / 40 = 0.10000 0.02513 ## MoveGap 0 5 3 / 59 = 0.05085 0.07072 ## ReduceConstraint 0 5 3 / 57 = 0.05263 0.03015 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 180 = 0.00000 0.00000 ## InsertFragment 0 6 3 / 49 = 0.06122 0.01269 ## TwoFragment 0 0 0 / 51 = 0.00000 0.00000 ## CrossOver 2 4 2 / 28 = 0.07143 0.01314 ## CrossAndInsert 0 1 0 / 44 = 0.00000 0.00000 ## ReduceClash 0 2 1 / 49 = 0.02041 0.04160 # generation 9: best score out of 20: T0506.try1 204.63013 cost/residue, 247 clashes 0.17488 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 6 = 0.16667 0.00446 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 9 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 8 = 0.25000 0.00020 ## TweakPsiSegment 0 13 9 / 17 = 0.52941 0.01775 ## TweakPsiPhiSubtree 1 7 5 / 11 = 0.45455 0.01914 ## TweakPsiPhiSegment 0 5 2 / 10 = 0.20000 0.02313 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 3 / 10 = 0.30000 0.00296 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 5 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 1 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 2 0 / 8 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 1 4 0 / 12 = 0.00000 0.00000 ## ReduceBreak 0 1 0 / 39 = 0.00000 0.00000 ## CloseGap 0 11 6 / 83 = 0.07229 0.13534 ## HealGap 0 12 4 / 44 = 0.09091 0.02285 ## MoveGap 0 5 3 / 65 = 0.04615 0.06419 ## ReduceConstraint 0 5 3 / 63 = 0.04762 0.02728 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 202 = 0.00000 0.00000 ## InsertFragment 0 6 3 / 53 = 0.05660 0.01173 ## TwoFragment 0 0 0 / 58 = 0.00000 0.00000 ## CrossOver 2 5 2 / 35 = 0.05714 0.01051 ## CrossAndInsert 1 1 0 / 46 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 61 = 0.03279 0.03811 # generation 10: best score out of 20: T0506.try1 203.19052 cost/residue, 223 clashes 0.15093 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 8 = 0.37500 0.00626 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 8 = 0.25000 0.00020 ## TweakPsiSegment 0 15 11 / 19 = 0.57895 0.01800 ## TweakPsiPhiSubtree 1 8 6 / 13 = 0.46154 0.01638 ## TweakPsiPhiSegment 0 6 2 / 12 = 0.16667 0.01927 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 3 / 10 = 0.30000 0.00296 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 5 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 1 5 0 / 15 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 46 = 0.02174 0.01679 ## CloseGap 0 17 10 / 95 = 0.10526 0.15115 ## HealGap 0 12 4 / 46 = 0.08696 0.02185 ## MoveGap 0 5 3 / 76 = 0.03947 0.05490 ## ReduceConstraint 0 5 3 / 70 = 0.04286 0.02455 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 220 = 0.00000 0.00000 ## InsertFragment 0 6 3 / 56 = 0.05357 0.01110 ## TwoFragment 0 0 0 / 63 = 0.00000 0.00000 ## CrossOver 2 6 3 / 39 = 0.07692 0.00944 ## CrossAndInsert 1 1 0 / 53 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 66 = 0.03030 0.03522 # generation 11: best score out of 20: T0506.try1 203.19052 cost/residue, 223 clashes 0.15093 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 9 = 0.33333 0.00557 ## JiggleSubtree 0 0 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 3 0 / 5 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 2 / 9 = 0.22222 0.00018 ## TweakPsiSegment 0 16 11 / 22 = 0.50000 0.01555 ## TweakPsiPhiSubtree 1 10 6 / 15 = 0.40000 0.01419 ## TweakPsiPhiSegment 0 6 2 / 12 = 0.16667 0.01927 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 6 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 5 3 / 10 = 0.30000 0.00296 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 5 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 1 6 0 / 19 = 0.00000 0.00000 ## ReduceBreak 0 2 1 / 51 = 0.01961 0.01514 ## CloseGap 0 22 12 / 111 = 0.10811 0.12991 ## HealGap 0 12 4 / 55 = 0.07273 0.01828 ## MoveGap 0 5 3 / 84 = 0.03571 0.04967 ## ReduceConstraint 0 6 3 / 78 = 0.03846 0.02203 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 237 = 0.00000 0.00000 ## InsertFragment 0 6 3 / 58 = 0.05172 0.01072 ## TwoFragment 0 0 0 / 71 = 0.00000 0.00000 ## CrossOver 2 7 3 / 42 = 0.07143 0.00876 ## CrossAndInsert 1 1 0 / 60 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 71 = 0.02817 0.03274 # generation 12: best score out of 20: T0506.try1 202.85709 cost/residue, 220 clashes 0.15018 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 9 = 0.33333 0.00557 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 2 / 9 = 0.22222 0.00018 ## TweakPsiSegment 0 17 12 / 25 = 0.48000 0.01454 ## TweakPsiPhiSubtree 1 11 7 / 17 = 0.41176 0.01711 ## TweakPsiPhiSegment 0 8 3 / 14 = 0.21429 0.02006 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 1 6 4 / 11 = 0.36364 0.00271 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 6 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 12 = 0.00000 0.00000 ## ClusteredRotamer 3 6 0 / 20 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 61 = 0.01639 0.01266 ## CloseGap 0 27 16 / 131 = 0.12214 0.12072 ## HealGap 0 12 4 / 62 = 0.06452 0.01621 ## MoveGap 0 5 3 / 90 = 0.03333 0.04636 ## ReduceConstraint 0 6 3 / 84 = 0.03571 0.02046 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 254 = 0.00000 0.00000 ## InsertFragment 0 6 3 / 59 = 0.05085 0.01054 ## TwoFragment 0 0 0 / 73 = 0.00000 0.00000 ## CrossOver 2 7 3 / 45 = 0.06667 0.00818 ## CrossAndInsert 1 1 0 / 67 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 77 = 0.02597 0.03019 # generation 13: best score out of 20: T0506.try1 202.78755 cost/residue, 220 clashes 0.15015 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 3 / 12 = 0.25000 0.00417 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 2 / 9 = 0.22222 0.00018 ## TweakPsiSegment 0 18 13 / 27 = 0.48148 0.01401 ## TweakPsiPhiSubtree 1 12 7 / 19 = 0.36842 0.01531 ## TweakPsiPhiSegment 0 12 4 / 20 = 0.20000 0.02895 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 2 9 7 / 16 = 0.43750 0.00207 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 6 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 4 6 0 / 20 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 68 = 0.01471 0.01136 ## CloseGap 0 28 17 / 141 = 0.12057 0.11466 ## HealGap 0 12 4 / 66 = 0.06061 0.01523 ## MoveGap 0 5 3 / 95 = 0.03158 0.04392 ## ReduceConstraint 0 6 3 / 90 = 0.03333 0.01909 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 0 / 274 = 0.00000 0.00000 ## InsertFragment 0 7 4 / 61 = 0.06557 0.01331 ## TwoFragment 0 0 0 / 77 = 0.00000 0.00000 ## CrossOver 2 7 3 / 46 = 0.06522 0.00800 ## CrossAndInsert 1 1 0 / 72 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 82 = 0.02439 0.02835 # generation 14: best score out of 20: T0506.try1 202.78755 cost/residue, 220 clashes 0.15015 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 7 4 / 13 = 0.30769 0.00389 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 8 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 6 2 / 9 = 0.22222 0.00018 ## TweakPsiSegment 0 18 13 / 27 = 0.48148 0.01401 ## TweakPsiPhiSubtree 1 14 7 / 21 = 0.33333 0.01385 ## TweakPsiPhiSegment 0 16 7 / 24 = 0.29167 0.03039 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 11 8 / 19 = 0.42105 0.00238 ## FixOmega 0 0 0 / 4 = 0.00000 0.00000 ## Backrub 7 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 15 = 0.00000 0.00000 ## ClusteredRotamer 4 7 0 / 21 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 73 = 0.01370 0.01058 ## CloseGap 0 28 17 / 156 = 0.10897 0.10364 ## HealGap 0 12 4 / 74 = 0.05405 0.01358 ## MoveGap 0 5 3 / 100 = 0.03000 0.04172 ## ReduceConstraint 0 6 3 / 97 = 0.03093 0.01772 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 296 = 0.00000 0.00000 ## InsertFragment 0 8 4 / 66 = 0.06061 0.01230 ## TwoFragment 0 0 0 / 79 = 0.00000 0.00000 ## CrossOver 2 7 3 / 47 = 0.06383 0.00783 ## CrossAndInsert 1 1 0 / 78 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 90 = 0.02222 0.02583 # generation 15: best score out of 20: T0506.try1 202.75858 cost/residue, 219 clashes 0.15007 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 8 4 / 14 = 0.28571 0.00361 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 0 / 6 = 0.00000 0.00000 ## TweakPhiSegment 0 2 0 / 4 = 0.00000 0.00000 ## TweakPsiSubtree 0 7 2 / 10 = 0.20000 0.00016 ## TweakPsiSegment 0 20 13 / 31 = 0.41935 0.01220 ## TweakPsiPhiSubtree 1 14 7 / 21 = 0.33333 0.01385 ## TweakPsiPhiSegment 1 20 10 / 28 = 0.35714 0.02966 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 11 8 / 19 = 0.42105 0.00238 ## FixOmega 0 1 1 / 5 = 0.20000 0.00054 ## Backrub 8 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 2 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 3 0 / 10 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 4 7 0 / 23 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 74 = 0.01351 0.01044 ## CloseGap 0 30 19 / 168 = 0.11310 0.09658 ## HealGap 0 12 4 / 82 = 0.04878 0.01226 ## MoveGap 0 5 3 / 111 = 0.02703 0.03759 ## ReduceConstraint 0 6 3 / 103 = 0.02913 0.01668 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 309 = 0.00000 0.00000 ## InsertFragment 0 8 4 / 75 = 0.05333 0.01083 ## TwoFragment 0 0 0 / 86 = 0.00000 0.00000 ## CrossOver 3 7 3 / 49 = 0.06122 0.00751 ## CrossAndInsert 1 2 0 / 81 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 99 = 0.02020 0.02348 # generation 16: best score out of 20: T0506.try1 202.41299 cost/residue, 220 clashes 0.14677 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 17 = 0.23529 0.00297 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 19 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 7 2 / 10 = 0.20000 0.00016 ## TweakPsiSegment 0 20 13 / 31 = 0.41935 0.01220 ## TweakPsiPhiSubtree 2 16 7 / 23 = 0.30435 0.01264 ## TweakPsiPhiSegment 1 22 10 / 30 = 0.33333 0.02768 ## TweakHbondSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 11 8 / 19 = 0.42105 0.00238 ## FixOmega 0 1 1 / 6 = 0.16667 0.00045 ## Backrub 8 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 4 0 / 11 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 4 7 0 / 24 = 0.00000 0.00000 ## ReduceBreak 0 3 1 / 76 = 0.01316 0.01016 ## CloseGap 0 31 20 / 185 = 0.10811 0.08773 ## HealGap 0 13 5 / 90 = 0.05556 0.01533 ## MoveGap 0 5 3 / 117 = 0.02564 0.03566 ## ReduceConstraint 0 6 3 / 108 = 0.02778 0.01591 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 329 = 0.00000 0.00000 ## InsertFragment 0 8 4 / 77 = 0.05195 0.01055 ## TwoFragment 0 0 0 / 93 = 0.00000 0.00000 ## CrossOver 3 9 4 / 54 = 0.07407 0.00780 ## CrossAndInsert 1 2 0 / 85 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 108 = 0.01852 0.02152 # generation 17: best score out of 20: T0506.try1 202.41299 cost/residue, 220 clashes 0.14677 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 17 = 0.23529 0.00297 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 20 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 5 = 0.00000 0.00000 ## TweakPsiSubtree 0 7 2 / 10 = 0.20000 0.00016 ## TweakPsiSegment 0 21 13 / 32 = 0.40625 0.01182 ## TweakPsiPhiSubtree 2 18 7 / 25 = 0.28000 0.01163 ## TweakPsiPhiSegment 1 24 10 / 33 = 0.30303 0.02516 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 9 / 22 = 0.40909 0.00214 ## FixOmega 0 1 1 / 7 = 0.14286 0.00039 ## Backrub 10 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 5 0 / 12 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 4 7 0 / 24 = 0.00000 0.00000 ## ReduceBreak 0 4 2 / 86 = 0.02326 0.01325 ## CloseGap 0 31 20 / 192 = 0.10417 0.08453 ## HealGap 0 13 5 / 97 = 0.05155 0.01422 ## MoveGap 0 5 3 / 125 = 0.02400 0.03338 ## ReduceConstraint 0 6 3 / 112 = 0.02679 0.01534 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 6 0 / 348 = 0.00000 0.00000 ## InsertFragment 0 9 4 / 85 = 0.04706 0.00955 ## TwoFragment 0 0 0 / 97 = 0.00000 0.00000 ## CrossOver 3 10 4 / 59 = 0.06780 0.00714 ## CrossAndInsert 2 2 0 / 92 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 113 = 0.01770 0.02057 # generation 18: best score out of 20: T0506.try1 200.97411 cost/residue, 235 clashes 0.10717 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 17 = 0.23529 0.00297 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 21 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 3 0 / 6 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 2 / 12 = 0.16667 0.00013 ## TweakPsiSegment 0 22 14 / 34 = 0.41176 0.01166 ## TweakPsiPhiSubtree 2 18 7 / 26 = 0.26923 0.01119 ## TweakPsiPhiSegment 2 27 13 / 39 = 0.33333 0.02529 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 13 9 / 24 = 0.37500 0.00196 ## FixOmega 0 1 1 / 8 = 0.12500 0.00034 ## Backrub 11 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 5 0 / 12 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 4 7 0 / 24 = 0.00000 0.00000 ## ReduceBreak 0 5 3 / 93 = 0.03226 0.02906 ## CloseGap 0 32 22 / 204 = 0.10784 0.07972 ## HealGap 0 13 5 / 106 = 0.04717 0.01302 ## MoveGap 0 5 3 / 135 = 0.02222 0.03091 ## ReduceConstraint 0 6 3 / 121 = 0.02479 0.01420 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 1 / 360 = 0.00278 0.00402 ## InsertFragment 0 9 4 / 89 = 0.04494 0.00912 ## TwoFragment 0 0 0 / 103 = 0.00000 0.00000 ## CrossOver 4 12 4 / 65 = 0.06154 0.00648 ## CrossAndInsert 2 2 0 / 93 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 117 = 0.01709 0.01987 # generation 19: best score out of 20: T0506.try1 200.85052 cost/residue, 223 clashes 0.13923 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 9 4 / 17 = 0.23529 0.00297 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 2 / 12 = 0.16667 0.00013 ## TweakPsiSegment 0 23 14 / 36 = 0.38889 0.01102 ## TweakPsiPhiSubtree 2 18 7 / 27 = 0.25926 0.01077 ## TweakPsiPhiSegment 2 27 13 / 40 = 0.32500 0.02466 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 15 10 / 26 = 0.38462 0.00189 ## FixOmega 0 2 1 / 10 = 0.10000 0.00027 ## Backrub 11 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 5 0 / 13 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 4 7 0 / 25 = 0.00000 0.00000 ## ReduceBreak 0 5 3 / 102 = 0.02941 0.02649 ## CloseGap 0 33 23 / 216 = 0.10648 0.07543 ## HealGap 0 14 6 / 113 = 0.05310 0.01553 ## MoveGap 0 5 3 / 140 = 0.02143 0.02980 ## ReduceConstraint 0 6 3 / 124 = 0.02419 0.01386 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 21 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 2 / 381 = 0.00525 0.00490 ## InsertFragment 0 9 4 / 95 = 0.04211 0.00855 ## TwoFragment 0 0 0 / 110 = 0.00000 0.00000 ## CrossOver 4 14 4 / 72 = 0.05556 0.00585 ## CrossAndInsert 2 2 0 / 96 = 0.00000 0.00000 ## ReduceClash 0 3 2 / 120 = 0.01667 0.01937 # generation 20: best score out of 20: T0506.try1 200.81566 cost/residue, 223 clashes 0.13923 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 4 / 18 = 0.22222 0.00281 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 22 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 3 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 5 0 / 8 = 0.00000 0.00000 ## TweakPsiSubtree 0 9 2 / 12 = 0.16667 0.00013 ## TweakPsiSegment 0 25 14 / 39 = 0.35897 0.01017 ## TweakPsiPhiSubtree 4 19 7 / 28 = 0.25000 0.01039 ## TweakPsiPhiSegment 2 32 15 / 45 = 0.33333 0.02358 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 15 11 / 27 = 0.40741 0.00186 ## FixOmega 0 2 1 / 11 = 0.09091 0.00025 ## Backrub 12 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 5 0 / 13 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 4 8 1 / 29 = 0.03448 0.00120 ## ReduceBreak 0 5 3 / 112 = 0.02679 0.02413 ## CloseGap 0 33 23 / 226 = 0.10177 0.07209 ## HealGap 0 14 6 / 117 = 0.05128 0.01499 ## MoveGap 0 5 3 / 147 = 0.02041 0.02838 ## ReduceConstraint 0 6 3 / 129 = 0.02326 0.01332 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 2 / 398 = 0.00503 0.00469 ## InsertFragment 0 9 4 / 100 = 0.04000 0.00812 ## TwoFragment 0 0 0 / 115 = 0.00000 0.00000 ## CrossOver 4 15 4 / 76 = 0.05263 0.00554 ## CrossAndInsert 2 2 0 / 102 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 129 = 0.01550 0.01802 # generation 21: best score out of 20: T0506.try1 200.74515 cost/residue, 223 clashes 0.14062 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 10 4 / 18 = 0.22222 0.00281 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 23 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 9 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 5 0 / 8 = 0.00000 0.00000 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 3 / 13 = 0.23077 0.00021 ## TweakPsiSegment 0 26 14 / 41 = 0.34146 0.00967 ## TweakPsiPhiSubtree 4 22 8 / 31 = 0.25806 0.01156 ## TweakPsiPhiSegment 2 34 17 / 49 = 0.34694 0.02314 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 17 12 / 31 = 0.38710 0.00164 ## FixOmega 1 2 1 / 11 = 0.09091 0.00025 ## Backrub 12 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 5 0 / 14 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 5 9 2 / 31 = 0.06452 0.00125 ## ReduceBreak 0 5 3 / 124 = 0.02419 0.02179 ## CloseGap 0 34 24 / 239 = 0.10042 0.06829 ## HealGap 0 14 6 / 120 = 0.05000 0.01462 ## MoveGap 0 5 3 / 153 = 0.01961 0.02727 ## ReduceConstraint 0 6 3 / 135 = 0.02222 0.01273 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 2 / 414 = 0.00483 0.00451 ## InsertFragment 0 9 4 / 107 = 0.03738 0.00759 ## TwoFragment 0 0 0 / 119 = 0.00000 0.00000 ## CrossOver 4 15 4 / 78 = 0.05128 0.00540 ## CrossAndInsert 2 2 0 / 105 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 132 = 0.01515 0.01761 # generation 22: best score out of 20: T0506.try1 200.58768 cost/residue, 239 clashes 0.13914 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 11 5 / 19 = 0.26316 0.00881 ## JiggleSubtree 0 0 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 13 = 0.00000 0.00000 ## OptSegment 0 0 0 / 24 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 3 / 15 = 0.20000 0.00018 ## TweakPsiSegment 0 28 15 / 43 = 0.34884 0.00927 ## TweakPsiPhiSubtree 5 22 8 / 33 = 0.24242 0.01086 ## TweakPsiPhiSegment 4 35 19 / 55 = 0.34545 0.02205 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 18 12 / 32 = 0.37500 0.00159 ## FixOmega 1 3 2 / 13 = 0.15385 0.01552 ## Backrub 13 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 6 0 / 15 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 23 = 0.00000 0.00000 ## ClusteredRotamer 6 9 2 / 33 = 0.06061 0.00118 ## ReduceBreak 0 5 3 / 139 = 0.02158 0.01944 ## CloseGap 0 37 27 / 249 = 0.10843 0.06580 ## HealGap 0 15 7 / 127 = 0.05512 0.01633 ## MoveGap 0 5 3 / 159 = 0.01887 0.02624 ## ReduceConstraint 0 6 3 / 136 = 0.02206 0.01264 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 2 / 431 = 0.00464 0.00433 ## InsertFragment 0 9 4 / 111 = 0.03604 0.00732 ## TwoFragment 0 0 0 / 121 = 0.00000 0.00000 ## CrossOver 5 15 4 / 82 = 0.04878 0.00513 ## CrossAndInsert 2 2 0 / 107 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 137 = 0.01460 0.01697 # generation 23: best score out of 20: T0506.try1 200.39067 cost/residue, 242 clashes 0.10370 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 13 7 / 25 = 0.28000 0.00958 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 3 / 15 = 0.20000 0.00018 ## TweakPsiSegment 0 28 15 / 43 = 0.34884 0.00927 ## TweakPsiPhiSubtree 5 22 8 / 34 = 0.23529 0.01054 ## TweakPsiPhiSegment 4 37 19 / 58 = 0.32759 0.02091 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 19 13 / 34 = 0.38235 0.00208 ## FixOmega 2 6 4 / 21 = 0.19048 0.02278 ## Backrub 13 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 3 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 6 0 / 16 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 24 = 0.00000 0.00000 ## ClusteredRotamer 7 9 2 / 33 = 0.06061 0.00118 ## ReduceBreak 0 6 3 / 147 = 0.02041 0.01838 ## CloseGap 0 39 29 / 261 = 0.11111 0.06281 ## HealGap 0 16 8 / 135 = 0.05926 0.01581 ## MoveGap 0 5 3 / 162 = 0.01852 0.02575 ## ReduceConstraint 0 6 3 / 142 = 0.02113 0.01210 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 29 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 2 / 446 = 0.00448 0.00418 ## InsertFragment 0 9 4 / 115 = 0.03478 0.00706 ## TwoFragment 0 0 0 / 125 = 0.00000 0.00000 ## CrossOver 6 15 4 / 86 = 0.04651 0.00490 ## CrossAndInsert 2 2 0 / 111 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 142 = 0.01408 0.01637 # generation 24: best score out of 20: T0506.try1 199.75453 cost/residue, 244 clashes 0.10370 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 15 7 / 29 = 0.24138 0.00826 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 8 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 26 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 3 / 15 = 0.20000 0.00018 ## TweakPsiSegment 0 30 15 / 46 = 0.32609 0.00867 ## TweakPsiPhiSubtree 6 22 8 / 36 = 0.22222 0.00995 ## TweakPsiPhiSegment 6 40 21 / 62 = 0.33871 0.02158 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 1 0 / 3 = 0.00000 0.00000 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 19 13 / 34 = 0.38235 0.00208 ## FixOmega 2 6 4 / 28 = 0.14286 0.01708 ## Backrub 14 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 6 0 / 16 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 25 = 0.00000 0.00000 ## ClusteredRotamer 7 9 2 / 34 = 0.05882 0.00114 ## ReduceBreak 0 6 3 / 152 = 0.01974 0.01778 ## CloseGap 0 42 32 / 273 = 0.11722 0.06008 ## HealGap 0 17 8 / 142 = 0.05634 0.01503 ## MoveGap 0 5 3 / 164 = 0.01829 0.02544 ## ReduceConstraint 0 6 3 / 147 = 0.02041 0.01169 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 30 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 469 = 0.00640 0.00533 ## InsertFragment 0 9 4 / 119 = 0.03361 0.00682 ## TwoFragment 0 0 0 / 129 = 0.00000 0.00000 ## CrossOver 6 15 4 / 90 = 0.04444 0.00468 ## CrossAndInsert 2 2 0 / 112 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 149 = 0.01342 0.01560 # generation 25: best score out of 20: T0506.try1 199.73634 cost/residue, 244 clashes 0.10370 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 18 10 / 34 = 0.29412 0.01328 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 27 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 6 1 / 9 = 0.11111 0.00000 ## TweakPhiSegment 0 5 0 / 9 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 3 / 15 = 0.20000 0.00018 ## TweakPsiSegment 0 30 15 / 47 = 0.31915 0.00848 ## TweakPsiPhiSubtree 6 23 8 / 37 = 0.21622 0.00968 ## TweakPsiPhiSegment 7 44 21 / 66 = 0.31818 0.02027 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 4 = 0.25000 0.03236 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 21 14 / 36 = 0.38889 0.00204 ## FixOmega 2 8 5 / 34 = 0.14706 0.01547 ## Backrub 14 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 6 0 / 16 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 27 = 0.00000 0.00000 ## ClusteredRotamer 7 9 2 / 38 = 0.05263 0.00102 ## ReduceBreak 0 6 3 / 158 = 0.01899 0.01710 ## CloseGap 0 43 33 / 281 = 0.11744 0.05839 ## HealGap 0 17 8 / 147 = 0.05442 0.01452 ## MoveGap 0 5 3 / 173 = 0.01734 0.02412 ## ReduceConstraint 0 6 3 / 154 = 0.01948 0.01116 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 31 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 487 = 0.00616 0.00514 ## InsertFragment 0 9 4 / 120 = 0.03333 0.00677 ## TwoFragment 0 0 0 / 136 = 0.00000 0.00000 ## CrossOver 6 15 4 / 93 = 0.04301 0.00453 ## CrossAndInsert 2 2 0 / 116 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 152 = 0.01316 0.01529 # generation 26: best score out of 20: T0506.try1 199.63997 cost/residue, 242 clashes 0.10384 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 22 10 / 39 = 0.25641 0.01158 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 28 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 7 1 / 10 = 0.10000 0.00000 ## TweakPhiSegment 0 5 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 3 / 15 = 0.20000 0.00018 ## TweakPsiSegment 0 31 16 / 48 = 0.33333 0.01031 ## TweakPsiPhiSubtree 6 24 9 / 38 = 0.23684 0.00955 ## TweakPsiPhiSegment 7 45 21 / 70 = 0.30000 0.01911 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 8 2 / 13 = 0.15385 0.01514 ## TweakMultimer 15 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 21 14 / 36 = 0.38889 0.00204 ## FixOmega 2 8 5 / 40 = 0.12500 0.01315 ## Backrub 14 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 6 0 / 17 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 7 9 2 / 42 = 0.04762 0.00092 ## ReduceBreak 0 6 3 / 163 = 0.01840 0.01658 ## CloseGap 0 43 34 / 288 = 0.11806 0.05700 ## HealGap 0 17 8 / 152 = 0.05263 0.01404 ## MoveGap 0 5 3 / 182 = 0.01648 0.02292 ## ReduceConstraint 0 6 3 / 163 = 0.01840 0.01054 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 32 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 501 = 0.00599 0.00499 ## InsertFragment 0 9 4 / 123 = 0.03252 0.00660 ## TwoFragment 0 0 0 / 139 = 0.00000 0.00000 ## CrossOver 6 15 4 / 95 = 0.04211 0.00443 ## CrossAndInsert 2 2 0 / 119 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 156 = 0.01282 0.01490 # generation 27: best score out of 20: T0506.try1 199.62663 cost/residue, 245 clashes 0.10460 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 24 11 / 42 = 0.26190 0.01205 ## JiggleSubtree 0 0 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 7 1 / 11 = 0.09091 0.00000 ## TweakPhiSegment 0 5 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 0 10 3 / 15 = 0.20000 0.00018 ## TweakPsiSegment 0 34 18 / 51 = 0.35294 0.00977 ## TweakPsiPhiSubtree 6 25 9 / 39 = 0.23077 0.00930 ## TweakPsiPhiSegment 7 47 21 / 72 = 0.29167 0.01858 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 9 2 / 15 = 0.13333 0.01312 ## TweakMultimer 17 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 22 14 / 37 = 0.37838 0.00198 ## FixOmega 2 8 5 / 43 = 0.11628 0.01223 ## Backrub 14 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 19 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 7 9 2 / 43 = 0.04651 0.00090 ## ReduceBreak 0 6 3 / 168 = 0.01786 0.01609 ## CloseGap 0 43 34 / 297 = 0.11448 0.05527 ## HealGap 0 18 8 / 158 = 0.05063 0.01350 ## MoveGap 0 5 3 / 188 = 0.01596 0.02219 ## ReduceConstraint 0 6 3 / 169 = 0.01775 0.01017 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 33 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 523 = 0.00574 0.00478 ## InsertFragment 0 9 4 / 130 = 0.03077 0.00625 ## TwoFragment 0 0 0 / 144 = 0.00000 0.00000 ## CrossOver 6 15 4 / 96 = 0.04167 0.00439 ## CrossAndInsert 2 2 0 / 124 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 161 = 0.01242 0.01444 # generation 28: best score out of 20: T0506.try1 198.46884 cost/residue, 244 clashes 0.10092 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 25 12 / 45 = 0.26667 0.01250 ## JiggleSubtree 0 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 29 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 8 2 / 12 = 0.16667 0.00461 ## TweakPhiSegment 0 5 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 0 11 3 / 16 = 0.18750 0.00017 ## TweakPsiSegment 0 37 19 / 56 = 0.33929 0.00946 ## TweakPsiPhiSubtree 6 25 9 / 41 = 0.21951 0.00885 ## TweakPsiPhiSegment 7 47 21 / 73 = 0.28767 0.01833 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 9 2 / 18 = 0.11111 0.01094 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 22 14 / 38 = 0.36842 0.00193 ## FixOmega 2 10 7 / 50 = 0.14000 0.01195 ## Backrub 15 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 20 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 28 = 0.00000 0.00000 ## ClusteredRotamer 8 9 2 / 46 = 0.04348 0.00084 ## ReduceBreak 0 7 4 / 174 = 0.02299 0.02288 ## CloseGap 0 45 36 / 308 = 0.11688 0.05333 ## HealGap 0 20 10 / 166 = 0.06024 0.01393 ## MoveGap 0 5 3 / 192 = 0.01562 0.02173 ## ReduceConstraint 0 6 3 / 171 = 0.01754 0.01005 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 535 = 0.00561 0.00468 ## InsertFragment 0 9 4 / 137 = 0.02920 0.00593 ## TwoFragment 0 0 0 / 149 = 0.00000 0.00000 ## CrossOver 6 15 4 / 99 = 0.04040 0.00425 ## CrossAndInsert 2 2 0 / 128 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 165 = 0.01212 0.01409 # generation 29: best score out of 20: T0506.try1 198.46884 cost/residue, 244 clashes 0.10092 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 26 12 / 51 = 0.23529 0.01103 ## JiggleSubtree 1 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 19 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 10 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 1 10 2 / 15 = 0.13333 0.00369 ## TweakPhiSegment 0 5 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 0 13 4 / 18 = 0.22222 0.00057 ## TweakPsiSegment 0 37 19 / 56 = 0.33929 0.00946 ## TweakPsiPhiSubtree 6 26 9 / 42 = 0.21429 0.00864 ## TweakPsiPhiSegment 8 50 22 / 78 = 0.28205 0.01908 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 10 2 / 22 = 0.09091 0.00895 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 22 14 / 38 = 0.36842 0.00193 ## FixOmega 2 11 8 / 53 = 0.15094 0.01183 ## Backrub 15 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 22 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 8 9 2 / 46 = 0.04348 0.00084 ## ReduceBreak 0 7 4 / 193 = 0.02073 0.02063 ## CloseGap 0 45 36 / 317 = 0.11356 0.05181 ## HealGap 0 21 10 / 172 = 0.05814 0.01344 ## MoveGap 0 5 3 / 198 = 0.01515 0.02107 ## ReduceConstraint 0 6 3 / 174 = 0.01724 0.00988 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 548 = 0.00547 0.00456 ## InsertFragment 0 9 4 / 138 = 0.02899 0.00588 ## TwoFragment 0 0 0 / 151 = 0.00000 0.00000 ## CrossOver 6 15 4 / 101 = 0.03960 0.00417 ## CrossAndInsert 2 2 0 / 132 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 171 = 0.01170 0.01359 # generation 30: best score out of 20: T0506.try1 198.46277 cost/residue, 244 clashes 0.10088 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 27 12 / 56 = 0.21429 0.01004 ## JiggleSubtree 1 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 30 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 5 = 0.00000 0.00000 ## TweakPhiSubtree 2 11 3 / 17 = 0.17647 0.00326 ## TweakPhiSegment 0 5 0 / 10 = 0.00000 0.00000 ## TweakPsiSubtree 0 13 4 / 20 = 0.20000 0.00051 ## TweakPsiSegment 0 38 20 / 57 = 0.35088 0.00990 ## TweakPsiPhiSubtree 6 27 9 / 43 = 0.20930 0.00844 ## TweakPsiPhiSegment 8 55 22 / 84 = 0.26190 0.01772 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 11 2 / 24 = 0.08333 0.00820 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 22 15 / 39 = 0.38462 0.00189 ## FixOmega 2 11 8 / 55 = 0.14545 0.01140 ## Backrub 16 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 22 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 29 = 0.00000 0.00000 ## ClusteredRotamer 8 10 2 / 49 = 0.04082 0.00079 ## ReduceBreak 0 7 4 / 202 = 0.01980 0.01971 ## CloseGap 0 46 37 / 329 = 0.11246 0.04994 ## HealGap 0 21 10 / 176 = 0.05682 0.01313 ## MoveGap 0 5 3 / 203 = 0.01478 0.02055 ## ReduceConstraint 0 6 3 / 174 = 0.01724 0.00988 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 566 = 0.00530 0.00442 ## InsertFragment 0 9 4 / 143 = 0.02797 0.00568 ## TwoFragment 0 0 0 / 155 = 0.00000 0.00000 ## CrossOver 6 15 4 / 104 = 0.03846 0.00405 ## CrossAndInsert 2 2 0 / 138 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 173 = 0.01156 0.01344 # generation 31: best score out of 20: T0506.try1 198.22966 cost/residue, 243 clashes 0.10180 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 28 13 / 57 = 0.22807 0.01765 ## JiggleSubtree 1 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 31 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 12 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 12 3 / 20 = 0.15000 0.00277 ## TweakPhiSegment 0 6 0 / 11 = 0.00000 0.00000 ## TweakPsiSubtree 0 14 4 / 21 = 0.19048 0.00048 ## TweakPsiSegment 0 40 22 / 60 = 0.36667 0.00949 ## TweakPsiPhiSubtree 6 28 10 / 46 = 0.21739 0.00822 ## TweakPsiPhiSegment 9 58 22 / 89 = 0.24719 0.01672 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 11 3 / 27 = 0.11111 0.00794 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 23 16 / 42 = 0.38095 0.00178 ## FixOmega 2 12 8 / 60 = 0.13333 0.01045 ## Backrub 16 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 22 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 33 = 0.00000 0.00000 ## ClusteredRotamer 8 10 2 / 52 = 0.03846 0.00075 ## ReduceBreak 0 7 4 / 211 = 0.01896 0.01887 ## CloseGap 0 47 38 / 341 = 0.11144 0.04821 ## HealGap 0 21 10 / 182 = 0.05495 0.01270 ## MoveGap 0 5 3 / 205 = 0.01463 0.02035 ## ReduceConstraint 0 6 3 / 176 = 0.01705 0.00976 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 34 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 581 = 0.00516 0.00431 ## InsertFragment 0 9 4 / 147 = 0.02721 0.00552 ## TwoFragment 0 0 0 / 157 = 0.00000 0.00000 ## CrossOver 6 16 5 / 105 = 0.04762 0.00459 ## CrossAndInsert 2 2 0 / 140 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 181 = 0.01105 0.01284 # generation 32: best score out of 20: T0506.try1 196.23024 cost/residue, 242 clashes 0.08923 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 34 16 / 72 = 0.22222 0.01698 ## JiggleSubtree 1 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 34 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 8 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 12 3 / 21 = 0.14286 0.00264 ## TweakPhiSegment 0 6 0 / 11 = 0.00000 0.00000 ## TweakPsiSubtree 0 14 4 / 22 = 0.18182 0.00046 ## TweakPsiSegment 0 42 23 / 62 = 0.37097 0.00925 ## TweakPsiPhiSubtree 6 28 10 / 47 = 0.21277 0.00804 ## TweakPsiPhiSegment 10 60 24 / 92 = 0.26087 0.01643 ## TweakHbondSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakHbondSegment 0 11 3 / 31 = 0.09677 0.00691 ## TweakMultimer 18 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 3 23 16 / 42 = 0.38095 0.00178 ## FixOmega 2 12 8 / 62 = 0.12903 0.01011 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 23 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 35 = 0.00000 0.00000 ## ClusteredRotamer 9 10 2 / 53 = 0.03774 0.00073 ## ReduceBreak 0 8 5 / 219 = 0.02283 0.02731 ## CloseGap 0 47 38 / 344 = 0.11047 0.04778 ## HealGap 0 21 10 / 187 = 0.05348 0.01236 ## MoveGap 0 5 3 / 209 = 0.01435 0.01996 ## ReduceConstraint 0 6 3 / 180 = 0.01667 0.00955 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 35 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 604 = 0.00497 0.00414 ## InsertFragment 0 9 4 / 149 = 0.02685 0.00545 ## TwoFragment 0 0 0 / 161 = 0.00000 0.00000 ## CrossOver 6 17 5 / 108 = 0.04630 0.00446 ## CrossAndInsert 2 2 0 / 144 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 182 = 0.01099 0.01277 # generation 33: best score out of 20: T0506.try1 196.22420 cost/residue, 242 clashes 0.08920 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 38 17 / 81 = 0.20988 0.01676 ## JiggleSubtree 1 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 21 = 0.00000 0.00000 ## OptSegment 0 0 0 / 36 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 2 12 4 / 23 = 0.17391 0.00254 ## TweakPhiSegment 0 6 0 / 11 = 0.00000 0.00000 ## TweakPsiSubtree 0 15 4 / 23 = 0.17391 0.00044 ## TweakPsiSegment 0 46 24 / 68 = 0.35294 0.00854 ## TweakPsiPhiSubtree 6 28 10 / 48 = 0.20833 0.00788 ## TweakPsiPhiSegment 10 61 25 / 96 = 0.26042 0.01617 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 12 3 / 33 = 0.09091 0.00649 ## TweakMultimer 19 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 23 16 / 42 = 0.38095 0.00178 ## FixOmega 2 13 8 / 65 = 0.12308 0.00965 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 24 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 9 10 2 / 54 = 0.03704 0.00072 ## ReduceBreak 0 8 5 / 236 = 0.02119 0.02534 ## CloseGap 0 49 40 / 350 = 0.11429 0.04700 ## HealGap 0 21 10 / 190 = 0.05263 0.01217 ## MoveGap 0 5 3 / 214 = 0.01402 0.01950 ## ReduceConstraint 0 6 3 / 183 = 0.01639 0.00939 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 37 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 611 = 0.00491 0.00409 ## InsertFragment 0 9 4 / 158 = 0.02532 0.00514 ## TwoFragment 0 0 0 / 166 = 0.00000 0.00000 ## CrossOver 6 17 5 / 110 = 0.04545 0.00438 ## CrossAndInsert 2 2 0 / 145 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 185 = 0.01081 0.01256 # generation 34: best score out of 20: T0506.try1 195.75224 cost/residue, 239 clashes 0.07413 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 45 18 / 93 = 0.19355 0.01566 ## JiggleSubtree 1 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 11 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 23 = 0.00000 0.00000 ## OptSegment 0 0 0 / 37 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 13 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 12 4 / 24 = 0.16667 0.00243 ## TweakPhiSegment 0 6 0 / 11 = 0.00000 0.00000 ## TweakPsiSubtree 0 15 4 / 23 = 0.17391 0.00044 ## TweakPsiSegment 0 47 24 / 69 = 0.34783 0.00842 ## TweakPsiPhiSubtree 6 28 11 / 49 = 0.22449 0.00951 ## TweakPsiPhiSegment 10 63 26 / 100 = 0.26000 0.01563 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 13 3 / 35 = 0.08571 0.00612 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 4 23 16 / 42 = 0.38095 0.00178 ## FixOmega 3 13 8 / 68 = 0.11765 0.00922 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 24 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 9 10 2 / 55 = 0.03636 0.00071 ## ReduceBreak 0 10 7 / 249 = 0.02811 0.02435 ## CloseGap 0 49 40 / 357 = 0.11204 0.04608 ## HealGap 0 21 10 / 197 = 0.05076 0.01173 ## MoveGap 0 5 3 / 218 = 0.01376 0.01914 ## ReduceConstraint 0 7 4 / 187 = 0.02139 0.02241 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 625 = 0.00480 0.00400 ## InsertFragment 0 9 4 / 161 = 0.02484 0.00504 ## TwoFragment 0 0 0 / 171 = 0.00000 0.00000 ## CrossOver 6 17 5 / 113 = 0.04425 0.00427 ## CrossAndInsert 2 2 0 / 149 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 192 = 0.01042 0.01211 # generation 35: best score out of 20: T0506.try1 195.66785 cost/residue, 239 clashes 0.07400 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 19 / 99 = 0.19192 0.01525 ## JiggleSubtree 1 0 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 9 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 14 4 / 27 = 0.14815 0.00216 ## TweakPhiSegment 0 6 0 / 11 = 0.00000 0.00000 ## TweakPsiSubtree 0 16 5 / 24 = 0.20833 0.00091 ## TweakPsiSegment 0 48 26 / 73 = 0.35616 0.00817 ## TweakPsiPhiSubtree 6 29 12 / 52 = 0.23077 0.00915 ## TweakPsiPhiSegment 10 66 26 / 103 = 0.25243 0.01517 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 13 3 / 37 = 0.08108 0.00579 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 24 17 / 43 = 0.39535 0.00185 ## FixOmega 3 13 8 / 70 = 0.11429 0.00896 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 4 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 7 0 / 24 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 38 = 0.00000 0.00000 ## ClusteredRotamer 10 10 2 / 57 = 0.03509 0.00068 ## ReduceBreak 0 10 7 / 257 = 0.02724 0.02360 ## CloseGap 0 49 40 / 365 = 0.10959 0.04507 ## HealGap 0 23 12 / 204 = 0.05882 0.01216 ## MoveGap 0 5 3 / 223 = 0.01345 0.01871 ## ReduceConstraint 0 7 4 / 202 = 0.01980 0.02075 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 637 = 0.00471 0.00393 ## InsertFragment 0 9 4 / 165 = 0.02424 0.00492 ## TwoFragment 0 0 0 / 172 = 0.00000 0.00000 ## CrossOver 6 17 5 / 115 = 0.04348 0.00419 ## CrossAndInsert 2 2 0 / 151 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 196 = 0.01020 0.01186 # generation 36: best score out of 20: T0506.try1 195.53960 cost/residue, 239 clashes 0.07413 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 47 19 / 103 = 0.18447 0.01465 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 15 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 15 4 / 28 = 0.14286 0.00208 ## TweakPhiSegment 0 7 1 / 13 = 0.07692 0.00558 ## TweakPsiSubtree 0 16 5 / 24 = 0.20833 0.00091 ## TweakPsiSegment 0 49 27 / 76 = 0.35526 0.00785 ## TweakPsiPhiSubtree 6 29 12 / 52 = 0.23077 0.00915 ## TweakPsiPhiSegment 10 70 29 / 111 = 0.26126 0.01776 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 13 3 / 39 = 0.07692 0.00549 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 5 24 17 / 43 = 0.39535 0.00185 ## FixOmega 3 13 8 / 73 = 0.10959 0.00859 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 5 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 9 0 / 27 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 10 10 2 / 59 = 0.03390 0.00066 ## ReduceBreak 0 10 7 / 270 = 0.02593 0.02246 ## CloseGap 0 49 41 / 373 = 0.10992 0.04412 ## HealGap 0 26 15 / 211 = 0.07109 0.01296 ## MoveGap 0 5 3 / 228 = 0.01316 0.01830 ## ReduceConstraint 0 7 4 / 216 = 0.01852 0.01940 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 651 = 0.00461 0.00384 ## InsertFragment 0 9 4 / 165 = 0.02424 0.00492 ## TwoFragment 0 0 0 / 174 = 0.00000 0.00000 ## CrossOver 6 17 5 / 118 = 0.04237 0.00408 ## CrossAndInsert 2 2 0 / 152 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 198 = 0.01010 0.01174 # Healing gap before (T0506)D223 residual break only 0.091 # generation 37: best score out of 20: T0506.try1 194.45308 cost/residue, 221 clashes 0.07530 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 48 20 / 106 = 0.18868 0.01518 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 38 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 10 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 15 4 / 28 = 0.14286 0.00208 ## TweakPhiSegment 1 9 3 / 17 = 0.17647 0.00427 ## TweakPsiSubtree 0 16 5 / 24 = 0.20833 0.00091 ## TweakPsiSegment 0 49 27 / 77 = 0.35065 0.00775 ## TweakPsiPhiSubtree 6 30 13 / 53 = 0.24528 0.01066 ## TweakPsiPhiSegment 11 72 29 / 117 = 0.24786 0.01684 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 13 3 / 40 = 0.07500 0.00536 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 25 18 / 46 = 0.39130 0.00212 ## FixOmega 3 13 8 / 74 = 0.10811 0.00847 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 9 0 / 28 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 10 10 2 / 59 = 0.03390 0.00066 ## ReduceBreak 0 11 8 / 285 = 0.02807 0.02522 ## CloseGap 0 52 45 / 384 = 0.11719 0.04292 ## HealGap 0 29 18 / 219 = 0.08219 0.01352 ## MoveGap 0 5 3 / 236 = 0.01271 0.01768 ## ReduceConstraint 0 7 4 / 227 = 0.01762 0.01846 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 665 = 0.00451 0.00376 ## InsertFragment 0 9 4 / 167 = 0.02395 0.00486 ## TwoFragment 0 0 0 / 181 = 0.00000 0.00000 ## CrossOver 6 17 5 / 119 = 0.04202 0.00405 ## CrossAndInsert 2 2 0 / 152 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 199 = 0.01005 0.01168 # generation 38: best score out of 20: T0506.try1 194.45308 cost/residue, 221 clashes 0.07530 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 51 22 / 111 = 0.19820 0.01579 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 40 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 16 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 15 4 / 28 = 0.14286 0.00208 ## TweakPhiSegment 1 11 5 / 22 = 0.22727 0.00330 ## TweakPsiSubtree 0 17 5 / 25 = 0.20000 0.00087 ## TweakPsiSegment 0 51 29 / 81 = 0.35802 0.00756 ## TweakPsiPhiSubtree 6 32 14 / 58 = 0.24138 0.00999 ## TweakPsiPhiSegment 11 72 29 / 118 = 0.24576 0.01670 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 41 = 0.07317 0.00523 ## TweakMultimer 20 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 25 18 / 47 = 0.38298 0.00207 ## FixOmega 3 13 8 / 76 = 0.10526 0.00825 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 9 0 / 29 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 10 11 2 / 61 = 0.03279 0.00064 ## ReduceBreak 0 11 8 / 293 = 0.02730 0.02453 ## CloseGap 0 52 45 / 392 = 0.11480 0.04204 ## HealGap 0 30 19 / 222 = 0.08559 0.01334 ## MoveGap 0 5 3 / 239 = 0.01255 0.01746 ## ReduceConstraint 0 7 4 / 241 = 0.01660 0.01739 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 679 = 0.00442 0.00368 ## InsertFragment 0 9 4 / 169 = 0.02367 0.00481 ## TwoFragment 0 0 0 / 189 = 0.00000 0.00000 ## CrossOver 7 17 5 / 120 = 0.04167 0.00402 ## CrossAndInsert 2 2 0 / 159 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 200 = 0.01000 0.01162 # generation 39: best score out of 20: T0506.try1 194.45308 cost/residue, 221 clashes 0.07530 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 51 22 / 116 = 0.18966 0.01511 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 24 = 0.00000 0.00000 ## OptSegment 0 0 0 / 41 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 15 4 / 29 = 0.13793 0.00201 ## TweakPhiSegment 1 12 5 / 23 = 0.21739 0.00316 ## TweakPsiSubtree 0 18 5 / 27 = 0.18519 0.00081 ## TweakPsiSegment 0 52 29 / 84 = 0.34524 0.00729 ## TweakPsiPhiSubtree 6 33 14 / 60 = 0.23333 0.00965 ## TweakPsiPhiSegment 11 75 32 / 121 = 0.26446 0.01686 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 41 = 0.07317 0.00523 ## TweakMultimer 22 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 26 18 / 48 = 0.37500 0.00203 ## FixOmega 3 14 9 / 78 = 0.11538 0.01315 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 9 0 / 29 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 39 = 0.00000 0.00000 ## ClusteredRotamer 10 11 2 / 61 = 0.03279 0.00064 ## ReduceBreak 0 11 8 / 306 = 0.02614 0.02349 ## CloseGap 0 54 47 / 397 = 0.11839 0.04154 ## HealGap 0 31 19 / 234 = 0.08120 0.01265 ## MoveGap 0 5 3 / 241 = 0.01245 0.01731 ## ReduceConstraint 0 7 4 / 254 = 0.01575 0.01650 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 695 = 0.00432 0.00360 ## InsertFragment 0 9 4 / 171 = 0.02339 0.00475 ## TwoFragment 0 0 0 / 193 = 0.00000 0.00000 ## CrossOver 7 17 5 / 122 = 0.04098 0.00395 ## CrossAndInsert 2 2 0 / 162 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 206 = 0.00971 0.01128 # generation 40: best score out of 20: T0506.try1 194.36565 cost/residue, 221 clashes 0.07652 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 53 24 / 120 = 0.20000 0.01730 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 3 16 4 / 31 = 0.12903 0.00188 ## TweakPhiSegment 1 13 6 / 25 = 0.24000 0.00527 ## TweakPsiSubtree 0 20 7 / 30 = 0.23333 0.00265 ## TweakPsiSegment 0 54 29 / 87 = 0.33333 0.00704 ## TweakPsiPhiSubtree 7 34 15 / 61 = 0.24590 0.01053 ## TweakPsiPhiSegment 11 79 35 / 126 = 0.27778 0.01919 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 42 = 0.07143 0.00510 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 26 18 / 51 = 0.35294 0.00191 ## FixOmega 3 14 9 / 85 = 0.10588 0.01207 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 9 0 / 29 = 0.00000 0.00000 ## ClashingRotamer 0 1 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 10 11 2 / 64 = 0.03125 0.00061 ## ReduceBreak 0 11 8 / 318 = 0.02516 0.02260 ## CloseGap 0 54 48 / 403 = 0.11911 0.04094 ## HealGap 0 31 19 / 238 = 0.07983 0.01244 ## MoveGap 0 5 3 / 244 = 0.01230 0.01710 ## ReduceConstraint 0 7 4 / 259 = 0.01544 0.01618 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 708 = 0.00424 0.00353 ## InsertFragment 0 9 4 / 172 = 0.02326 0.00472 ## TwoFragment 0 0 0 / 198 = 0.00000 0.00000 ## CrossOver 7 17 5 / 127 = 0.03937 0.00380 ## CrossAndInsert 2 2 0 / 164 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 210 = 0.00952 0.01107 # generation 41: best score out of 20: T0506.try1 194.33644 cost/residue, 221 clashes 0.07652 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 56 26 / 129 = 0.20155 0.01669 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 25 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 4 17 4 / 32 = 0.12500 0.00182 ## TweakPhiSegment 1 13 6 / 26 = 0.23077 0.00507 ## TweakPsiSubtree 0 20 7 / 33 = 0.21212 0.00241 ## TweakPsiSegment 0 57 30 / 90 = 0.33333 0.00682 ## TweakPsiPhiSubtree 7 36 15 / 66 = 0.22727 0.00973 ## TweakPsiPhiSegment 12 80 36 / 135 = 0.26667 0.01797 ## TweakHbondSubtree 0 2 0 / 4 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 42 = 0.07143 0.00510 ## TweakMultimer 24 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 27 19 / 53 = 0.35849 0.00239 ## FixOmega 4 14 9 / 89 = 0.10112 0.01153 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 9 1 / 30 = 0.03333 0.00033 ## ClashingRotamer 0 1 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 66 = 0.03030 0.00059 ## ReduceBreak 0 11 8 / 329 = 0.02432 0.02184 ## CloseGap 0 55 49 / 407 = 0.12039 0.04056 ## HealGap 0 31 19 / 247 = 0.07692 0.01199 ## MoveGap 0 5 3 / 247 = 0.01215 0.01689 ## ReduceConstraint 0 7 4 / 266 = 0.01504 0.01576 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 716 = 0.00419 0.00349 ## InsertFragment 0 9 4 / 176 = 0.02273 0.00461 ## TwoFragment 0 0 0 / 200 = 0.00000 0.00000 ## CrossOver 7 18 6 / 135 = 0.04444 0.00364 ## CrossAndInsert 2 2 0 / 167 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 211 = 0.00948 0.01102 # generation 42: best score out of 20: T0506.try1 194.27740 cost/residue, 222 clashes 0.07574 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 58 26 / 140 = 0.18571 0.01538 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 26 = 0.00000 0.00000 ## OptSegment 0 0 0 / 44 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 4 17 4 / 32 = 0.12500 0.00182 ## TweakPhiSegment 1 14 6 / 29 = 0.20690 0.00455 ## TweakPsiSubtree 0 23 9 / 40 = 0.22500 0.00423 ## TweakPsiSegment 0 60 31 / 95 = 0.32632 0.00677 ## TweakPsiPhiSubtree 7 36 15 / 68 = 0.22059 0.00945 ## TweakPsiPhiSegment 13 83 38 / 141 = 0.26950 0.01844 ## TweakHbondSubtree 0 2 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 43 = 0.06977 0.00498 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 27 19 / 54 = 0.35185 0.00234 ## FixOmega 4 14 9 / 95 = 0.09474 0.01080 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 33 = 0.06061 0.00067 ## ClashingRotamer 0 1 0 / 41 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 68 = 0.02941 0.00057 ## ReduceBreak 0 11 8 / 337 = 0.02374 0.02133 ## CloseGap 0 55 49 / 412 = 0.11893 0.04007 ## HealGap 0 31 19 / 254 = 0.07480 0.01166 ## MoveGap 0 5 3 / 250 = 0.01200 0.01669 ## ReduceConstraint 0 7 4 / 269 = 0.01487 0.01558 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 38 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 723 = 0.00415 0.00346 ## InsertFragment 0 9 4 / 179 = 0.02235 0.00454 ## TwoFragment 0 0 0 / 204 = 0.00000 0.00000 ## CrossOver 7 18 6 / 135 = 0.04444 0.00364 ## CrossAndInsert 2 2 0 / 173 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 215 = 0.00930 0.01081 # generation 43: best score out of 20: T0506.try1 194.13271 cost/residue, 222 clashes 0.07574 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 60 28 / 144 = 0.19444 0.01654 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 27 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 11 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 6 = 0.00000 0.00000 ## TweakPhiSubtree 4 17 4 / 32 = 0.12500 0.00182 ## TweakPhiSegment 2 15 6 / 31 = 0.19355 0.00425 ## TweakPsiSubtree 0 25 9 / 42 = 0.21429 0.00403 ## TweakPsiSegment 0 60 32 / 97 = 0.32990 0.00666 ## TweakPsiPhiSubtree 7 36 15 / 70 = 0.21429 0.00918 ## TweakPsiPhiSegment 14 87 40 / 152 = 0.26316 0.01738 ## TweakHbondSubtree 0 2 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 44 = 0.06818 0.00487 ## TweakMultimer 25 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 28 19 / 57 = 0.33333 0.00222 ## FixOmega 4 15 10 / 97 = 0.10309 0.01070 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 35 = 0.05714 0.00064 ## ClashingRotamer 0 1 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 70 = 0.02857 0.00055 ## ReduceBreak 0 11 8 / 347 = 0.02305 0.02071 ## CloseGap 0 57 51 / 416 = 0.12260 0.03971 ## HealGap 0 32 19 / 261 = 0.07280 0.01134 ## MoveGap 0 5 3 / 254 = 0.01181 0.01643 ## ReduceConstraint 0 7 4 / 280 = 0.01429 0.01497 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 39 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 735 = 0.00408 0.00340 ## InsertFragment 0 9 4 / 182 = 0.02198 0.00446 ## TwoFragment 0 0 0 / 207 = 0.00000 0.00000 ## CrossOver 7 18 6 / 136 = 0.04412 0.00361 ## CrossAndInsert 2 2 0 / 175 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 221 = 0.00905 0.01052 # generation 44: best score out of 20: T0506.try1 193.98785 cost/residue, 213 clashes 0.07525 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 61 28 / 151 = 0.18543 0.01578 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 12 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 7 = 0.00000 0.00000 ## TweakPhiSubtree 4 18 5 / 33 = 0.15152 0.00616 ## TweakPhiSegment 2 16 6 / 32 = 0.18750 0.00412 ## TweakPsiSubtree 0 27 11 / 44 = 0.25000 0.00544 ## TweakPsiSegment 0 61 33 / 98 = 0.33673 0.00665 ## TweakPsiPhiSubtree 7 36 15 / 74 = 0.20270 0.00868 ## TweakPsiPhiSegment 14 91 42 / 160 = 0.26250 0.01711 ## TweakHbondSubtree 0 2 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 45 = 0.06667 0.00476 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 32 20 / 62 = 0.32258 0.00205 ## FixOmega 4 15 10 / 100 = 0.10000 0.01038 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 6 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 36 = 0.05556 0.00062 ## ClashingRotamer 0 1 0 / 42 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 71 = 0.02817 0.00055 ## ReduceBreak 0 11 8 / 360 = 0.02222 0.01996 ## CloseGap 0 58 52 / 422 = 0.12322 0.03916 ## HealGap 0 32 19 / 265 = 0.07170 0.01117 ## MoveGap 0 5 3 / 258 = 0.01163 0.01617 ## ReduceConstraint 0 7 4 / 289 = 0.01384 0.01450 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 751 = 0.00399 0.00333 ## InsertFragment 0 9 4 / 184 = 0.02174 0.00441 ## TwoFragment 0 0 0 / 208 = 0.00000 0.00000 ## CrossOver 7 18 6 / 139 = 0.04317 0.00353 ## CrossAndInsert 2 2 0 / 176 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 222 = 0.00901 0.01047 # generation 45: best score out of 20: T0506.try1 193.98395 cost/residue, 220 clashes 0.07783 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 62 28 / 157 = 0.17834 0.01517 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 28 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 5 21 8 / 40 = 0.20000 0.00869 ## TweakPhiSegment 2 16 6 / 33 = 0.18182 0.00399 ## TweakPsiSubtree 0 28 11 / 48 = 0.22917 0.00499 ## TweakPsiSegment 0 62 33 / 100 = 0.33000 0.00652 ## TweakPsiPhiSubtree 7 38 17 / 77 = 0.22078 0.00935 ## TweakPsiPhiSegment 14 93 42 / 166 = 0.25301 0.01649 ## TweakHbondSubtree 0 2 0 / 6 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 45 = 0.06667 0.00476 ## TweakMultimer 26 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 34 21 / 65 = 0.32308 0.00222 ## FixOmega 5 16 11 / 107 = 0.10280 0.01135 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 7 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 37 = 0.05405 0.00060 ## ClashingRotamer 0 1 0 / 43 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 71 = 0.02817 0.00055 ## ReduceBreak 0 11 8 / 372 = 0.02151 0.01932 ## CloseGap 0 58 53 / 423 = 0.12530 0.03909 ## HealGap 0 32 19 / 272 = 0.06985 0.01089 ## MoveGap 0 5 3 / 258 = 0.01163 0.01617 ## ReduceConstraint 0 7 4 / 300 = 0.01333 0.01397 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 41 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 766 = 0.00392 0.00327 ## InsertFragment 0 9 4 / 186 = 0.02151 0.00437 ## TwoFragment 0 0 0 / 210 = 0.00000 0.00000 ## CrossOver 7 18 6 / 141 = 0.04255 0.00348 ## CrossAndInsert 2 2 0 / 178 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 225 = 0.00889 0.01033 # generation 46: best score out of 20: T0506.try1 193.86012 cost/residue, 222 clashes 0.07742 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 64 29 / 164 = 0.17683 0.01501 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 17 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 13 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 6 25 9 / 51 = 0.17647 0.00682 ## TweakPhiSegment 2 16 6 / 33 = 0.18182 0.00399 ## TweakPsiSubtree 0 28 11 / 49 = 0.22449 0.00488 ## TweakPsiSegment 0 62 33 / 100 = 0.33000 0.00652 ## TweakPsiPhiSubtree 7 38 17 / 78 = 0.21795 0.00923 ## TweakPsiPhiSegment 16 94 43 / 174 = 0.24713 0.01684 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 47 = 0.06383 0.00456 ## TweakMultimer 28 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 7 36 21 / 69 = 0.30435 0.00210 ## FixOmega 6 16 11 / 111 = 0.09910 0.01095 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 7 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 38 = 0.05263 0.00059 ## ClashingRotamer 0 1 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 72 = 0.02778 0.00054 ## ReduceBreak 0 11 8 / 381 = 0.02100 0.01886 ## CloseGap 0 60 55 / 427 = 0.12881 0.03875 ## HealGap 0 33 20 / 276 = 0.07246 0.01078 ## MoveGap 0 5 3 / 260 = 0.01154 0.01605 ## ReduceConstraint 0 7 4 / 307 = 0.01303 0.01365 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 778 = 0.00386 0.00322 ## InsertFragment 0 9 4 / 190 = 0.02105 0.00427 ## TwoFragment 0 0 0 / 210 = 0.00000 0.00000 ## CrossOver 7 19 7 / 145 = 0.04828 0.00345 ## CrossAndInsert 2 2 0 / 183 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 229 = 0.00873 0.01015 # generation 47: best score out of 20: T0506.try1 193.85333 cost/residue, 212 clashes 0.07525 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 66 31 / 171 = 0.18129 0.01506 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 45 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 6 26 10 / 54 = 0.18519 0.00644 ## TweakPhiSegment 2 17 6 / 34 = 0.17647 0.00388 ## TweakPsiSubtree 0 29 11 / 54 = 0.20370 0.00443 ## TweakPsiSegment 0 62 33 / 100 = 0.33000 0.00652 ## TweakPsiPhiSubtree 8 40 18 / 80 = 0.22500 0.00917 ## TweakPsiPhiSegment 17 96 44 / 183 = 0.24044 0.01602 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 49 = 0.06122 0.00437 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 37 21 / 71 = 0.29577 0.00204 ## FixOmega 6 17 12 / 120 = 0.10000 0.01126 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 7 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 39 = 0.05128 0.00057 ## ClashingRotamer 0 1 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 73 = 0.02740 0.00053 ## ReduceBreak 0 11 8 / 390 = 0.02051 0.01843 ## CloseGap 0 61 56 / 431 = 0.12993 0.03840 ## HealGap 0 33 20 / 282 = 0.07092 0.01055 ## MoveGap 0 5 3 / 264 = 0.01136 0.01580 ## ReduceConstraint 0 7 4 / 313 = 0.01278 0.01339 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 788 = 0.00381 0.00317 ## InsertFragment 0 9 4 / 195 = 0.02051 0.00416 ## TwoFragment 0 0 0 / 213 = 0.00000 0.00000 ## CrossOver 7 19 7 / 148 = 0.04730 0.00338 ## CrossAndInsert 2 2 0 / 185 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 232 = 0.00862 0.01002 # generation 48: best score out of 20: T0506.try1 193.78944 cost/residue, 212 clashes 0.07525 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 68 33 / 179 = 0.18436 0.01492 ## JiggleSubtree 1 1 0 / 6 = 0.00000 0.00000 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 8 = 0.00000 0.00000 ## TweakPhiSubtree 6 32 12 / 61 = 0.19672 0.00570 ## TweakPhiSegment 2 18 6 / 37 = 0.16216 0.00356 ## TweakPsiSubtree 0 29 11 / 57 = 0.19298 0.00420 ## TweakPsiSegment 0 62 33 / 102 = 0.32353 0.00639 ## TweakPsiPhiSubtree 8 43 20 / 87 = 0.22989 0.00928 ## TweakPsiPhiSegment 19 98 45 / 190 = 0.23684 0.01553 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 49 = 0.06122 0.00437 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 37 22 / 72 = 0.30556 0.00226 ## FixOmega 8 17 12 / 124 = 0.09677 0.01090 ## Backrub 17 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 7 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 42 = 0.04762 0.00053 ## ClashingRotamer 0 1 0 / 44 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 76 = 0.02632 0.00051 ## ReduceBreak 0 11 8 / 395 = 0.02025 0.01819 ## CloseGap 0 62 57 / 437 = 0.13043 0.03788 ## HealGap 0 34 20 / 289 = 0.06920 0.01029 ## MoveGap 0 5 3 / 266 = 0.01128 0.01569 ## ReduceConstraint 0 7 4 / 319 = 0.01254 0.01314 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 42 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 3 / 802 = 0.00374 0.00312 ## InsertFragment 0 9 4 / 198 = 0.02020 0.00410 ## TwoFragment 0 0 0 / 216 = 0.00000 0.00000 ## CrossOver 7 19 7 / 148 = 0.04730 0.00338 ## CrossAndInsert 2 2 0 / 187 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 235 = 0.00851 0.00989 # generation 49: best score out of 20: T0506.try1 193.72234 cost/residue, 218 clashes 0.07525 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 68 33 / 186 = 0.17742 0.01436 ## JiggleSubtree 1 2 1 / 8 = 0.12500 0.01296 ## JiggleSegment 0 2 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 6 33 12 / 62 = 0.19355 0.00561 ## TweakPhiSegment 3 19 6 / 41 = 0.14634 0.00321 ## TweakPsiSubtree 0 29 11 / 57 = 0.19298 0.00420 ## TweakPsiSegment 0 65 33 / 108 = 0.30556 0.00603 ## TweakPsiPhiSubtree 9 46 22 / 92 = 0.23913 0.00940 ## TweakPsiPhiSegment 20 101 46 / 196 = 0.23469 0.01538 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 14 3 / 50 = 0.06000 0.00428 ## TweakMultimer 29 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 37 22 / 72 = 0.30556 0.00226 ## FixOmega 8 17 12 / 125 = 0.09600 0.01081 ## Backrub 18 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 7 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 43 = 0.04651 0.00052 ## ClashingRotamer 0 1 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 76 = 0.02632 0.00051 ## ReduceBreak 0 11 8 / 402 = 0.01990 0.01788 ## CloseGap 0 63 58 / 442 = 0.13122 0.03751 ## HealGap 0 34 20 / 295 = 0.06780 0.01008 ## MoveGap 0 5 3 / 268 = 0.01119 0.01557 ## ReduceConstraint 0 7 4 / 331 = 0.01208 0.01266 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 43 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 818 = 0.00489 0.00314 ## InsertFragment 0 9 4 / 200 = 0.02000 0.00406 ## TwoFragment 0 0 0 / 220 = 0.00000 0.00000 ## CrossOver 7 20 7 / 152 = 0.04605 0.00330 ## CrossAndInsert 2 2 0 / 189 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 238 = 0.00840 0.00977 # generation 50: best score out of 20: T0506.try1 193.64630 cost/residue, 205 clashes 0.07537 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 68 33 / 192 = 0.17188 0.01391 ## JiggleSubtree 1 3 2 / 22 = 0.09091 0.01412 ## JiggleSegment 0 2 0 / 14 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 46 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 7 36 14 / 67 = 0.20896 0.00523 ## TweakPhiSegment 3 19 6 / 41 = 0.14634 0.00321 ## TweakPsiSubtree 0 30 12 / 58 = 0.20690 0.00456 ## TweakPsiSegment 0 66 33 / 111 = 0.29730 0.00587 ## TweakPsiPhiSubtree 9 48 23 / 96 = 0.23958 0.00908 ## TweakPsiPhiSegment 20 103 48 / 201 = 0.23881 0.01534 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 15 4 / 51 = 0.07843 0.00433 ## TweakMultimer 31 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 38 23 / 74 = 0.31081 0.00260 ## FixOmega 8 18 13 / 132 = 0.09848 0.01024 ## Backrub 18 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 8 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 43 = 0.04651 0.00052 ## ClashingRotamer 0 1 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 76 = 0.02632 0.00051 ## ReduceBreak 0 11 8 / 405 = 0.01975 0.01774 ## CloseGap 0 64 59 / 448 = 0.13170 0.03702 ## HealGap 0 34 20 / 298 = 0.06711 0.00998 ## MoveGap 0 5 3 / 272 = 0.01103 0.01534 ## ReduceConstraint 0 7 4 / 338 = 0.01183 0.01240 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 829 = 0.00483 0.00310 ## InsertFragment 0 9 4 / 203 = 0.01970 0.00400 ## TwoFragment 0 0 0 / 223 = 0.00000 0.00000 ## CrossOver 7 20 7 / 153 = 0.04575 0.00327 ## CrossAndInsert 2 2 0 / 193 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 241 = 0.00830 0.00964 # generation 51: best score out of 20: T0506.try1 193.63101 cost/residue, 205 clashes 0.07537 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 70 34 / 197 = 0.17259 0.01373 ## JiggleSubtree 1 4 2 / 33 = 0.06061 0.00942 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 9 = 0.00000 0.00000 ## TweakPhiSubtree 7 37 15 / 72 = 0.20833 0.00535 ## TweakPhiSegment 3 19 6 / 42 = 0.14286 0.00314 ## TweakPsiSubtree 0 33 13 / 65 = 0.20000 0.00408 ## TweakPsiSegment 0 66 34 / 113 = 0.30088 0.00583 ## TweakPsiPhiSubtree 9 48 23 / 101 = 0.22772 0.00863 ## TweakPsiPhiSegment 20 104 48 / 205 = 0.23415 0.01505 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 15 4 / 53 = 0.07547 0.00417 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 41 26 / 80 = 0.32500 0.00283 ## FixOmega 11 18 13 / 135 = 0.09630 0.01001 ## Backrub 18 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 8 2 0 / 3 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 44 = 0.04545 0.00051 ## ClashingRotamer 0 1 0 / 45 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 76 = 0.02632 0.00051 ## ReduceBreak 0 11 8 / 411 = 0.01946 0.01749 ## CloseGap 0 65 61 / 452 = 0.13496 0.03677 ## HealGap 0 35 20 / 302 = 0.06623 0.00985 ## MoveGap 0 5 3 / 275 = 0.01091 0.01517 ## ReduceConstraint 0 7 4 / 343 = 0.01166 0.01222 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 45 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 837 = 0.00478 0.00307 ## InsertFragment 0 9 4 / 206 = 0.01942 0.00394 ## TwoFragment 0 0 0 / 225 = 0.00000 0.00000 ## CrossOver 7 20 7 / 157 = 0.04459 0.00319 ## CrossAndInsert 2 2 0 / 194 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 245 = 0.00816 0.00949 # generation 52: best score out of 20: T0506.try1 193.40758 cost/residue, 205 clashes 0.07537 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 72 36 / 202 = 0.17822 0.01418 ## JiggleSubtree 1 5 3 / 44 = 0.06818 0.00709 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 30 = 0.00000 0.00000 ## OptSegment 0 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 19 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 7 37 15 / 74 = 0.20270 0.00520 ## TweakPhiSegment 3 20 6 / 43 = 0.13953 0.00307 ## TweakPsiSubtree 0 36 15 / 68 = 0.22059 0.00436 ## TweakPsiSegment 0 67 35 / 116 = 0.30172 0.00568 ## TweakPsiPhiSubtree 10 48 23 / 106 = 0.21698 0.00822 ## TweakPsiPhiSegment 22 106 51 / 213 = 0.23944 0.01596 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 15 4 / 56 = 0.07143 0.00394 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 8 42 27 / 85 = 0.31765 0.00267 ## FixOmega 11 18 13 / 141 = 0.09220 0.00959 ## Backrub 18 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 9 2 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 44 = 0.04545 0.00051 ## ClashingRotamer 0 1 0 / 46 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 77 = 0.02597 0.00050 ## ReduceBreak 0 11 8 / 418 = 0.01914 0.01719 ## CloseGap 0 66 62 / 460 = 0.13478 0.03614 ## HealGap 0 36 20 / 306 = 0.06536 0.00972 ## MoveGap 0 5 3 / 277 = 0.01083 0.01506 ## ReduceConstraint 0 7 4 / 349 = 0.01146 0.01201 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 846 = 0.00473 0.00304 ## InsertFragment 0 9 4 / 206 = 0.01942 0.00394 ## TwoFragment 0 0 0 / 227 = 0.00000 0.00000 ## CrossOver 7 20 7 / 158 = 0.04430 0.00317 ## CrossAndInsert 2 2 0 / 196 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 247 = 0.00810 0.00941 # generation 53: best score out of 20: T0506.try1 193.17732 cost/residue, 205 clashes 0.07537 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 74 38 / 209 = 0.18182 0.01459 ## JiggleSubtree 1 6 3 / 48 = 0.06250 0.00650 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 20 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 10 = 0.00000 0.00000 ## TweakPhiSubtree 7 37 15 / 74 = 0.20270 0.00520 ## TweakPhiSegment 3 21 7 / 48 = 0.14583 0.00275 ## TweakPsiSubtree 1 37 15 / 74 = 0.20270 0.00400 ## TweakPsiSegment 0 67 35 / 117 = 0.29915 0.00563 ## TweakPsiPhiSubtree 11 49 25 / 108 = 0.23148 0.00848 ## TweakPsiPhiSegment 22 110 54 / 222 = 0.24324 0.01611 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 16 4 / 57 = 0.07018 0.00387 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 10 43 31 / 89 = 0.34831 0.00330 ## FixOmega 11 19 14 / 145 = 0.09655 0.01091 ## Backrub 19 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 9 2 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 12 3 / 45 = 0.06667 0.00300 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 77 = 0.02597 0.00050 ## ReduceBreak 0 11 8 / 426 = 0.01878 0.01687 ## CloseGap 0 67 63 / 465 = 0.13548 0.03577 ## HealGap 0 37 20 / 308 = 0.06494 0.00966 ## MoveGap 0 5 3 / 282 = 0.01064 0.01480 ## ReduceConstraint 0 8 5 / 354 = 0.01412 0.01205 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 46 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 859 = 0.00466 0.00299 ## InsertFragment 0 9 4 / 210 = 0.01905 0.00387 ## TwoFragment 0 0 0 / 230 = 0.00000 0.00000 ## CrossOver 7 20 7 / 161 = 0.04348 0.00311 ## CrossAndInsert 2 2 0 / 199 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 249 = 0.00803 0.00934 # generation 54: best score out of 20: T0506.try1 193.09056 cost/residue, 205 clashes 0.07574 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 76 40 / 213 = 0.18779 0.01489 ## JiggleSubtree 1 6 3 / 50 = 0.06000 0.00624 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 49 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 7 38 15 / 80 = 0.18750 0.00481 ## TweakPhiSegment 4 22 7 / 49 = 0.14286 0.00269 ## TweakPsiSubtree 1 38 16 / 77 = 0.20779 0.00406 ## TweakPsiSegment 0 67 35 / 117 = 0.29915 0.00563 ## TweakPsiPhiSubtree 12 49 25 / 112 = 0.22321 0.00817 ## TweakPsiPhiSegment 22 115 55 / 230 = 0.23913 0.01593 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 17 4 / 58 = 0.06897 0.00381 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 12 44 32 / 92 = 0.34783 0.00342 ## FixOmega 11 20 15 / 152 = 0.09868 0.01064 ## Backrub 19 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 9 2 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 13 4 / 52 = 0.07692 0.00301 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 77 = 0.02597 0.00050 ## ReduceBreak 0 11 8 / 435 = 0.01839 0.01652 ## CloseGap 0 67 63 / 469 = 0.13433 0.03546 ## HealGap 0 37 20 / 312 = 0.06410 0.00953 ## MoveGap 0 5 3 / 283 = 0.01060 0.01474 ## ReduceConstraint 0 8 5 / 355 = 0.01408 0.01202 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 871 = 0.00459 0.00295 ## InsertFragment 0 9 4 / 214 = 0.01869 0.00379 ## TwoFragment 0 0 0 / 230 = 0.00000 0.00000 ## CrossOver 7 20 7 / 163 = 0.04294 0.00307 ## CrossAndInsert 2 2 0 / 205 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 257 = 0.00778 0.00904 # Can't patch backbone between (T0506)G206 and (T0506)A207 because distance= 3.983 not near ideal 3.804 # generation 55: best score out of 20: T0506.try1 192.70052 cost/residue, 199 clashes 0.07537 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 79 41 / 222 = 0.18468 0.01431 ## JiggleSubtree 1 6 3 / 51 = 0.05882 0.00612 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 51 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 14 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 11 = 0.00000 0.00000 ## TweakPhiSubtree 7 38 16 / 84 = 0.19048 0.00483 ## TweakPhiSegment 5 22 7 / 50 = 0.14000 0.00264 ## TweakPsiSubtree 1 39 17 / 79 = 0.21519 0.00547 ## TweakPsiSegment 0 67 35 / 118 = 0.29661 0.00558 ## TweakPsiPhiSubtree 13 49 25 / 114 = 0.21930 0.00803 ## TweakPsiPhiSegment 24 121 56 / 245 = 0.22857 0.01541 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 17 4 / 58 = 0.06897 0.00381 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 45 32 / 94 = 0.34043 0.00334 ## FixOmega 11 23 18 / 158 = 0.11392 0.01476 ## Backrub 19 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 9 2 0 / 4 = 0.00000 0.00000 ## OneRotamer 0 13 4 / 56 = 0.07143 0.00280 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 79 = 0.02532 0.00049 ## ReduceBreak 0 11 8 / 444 = 0.01802 0.01619 ## CloseGap 0 67 63 / 471 = 0.13376 0.03531 ## HealGap 0 38 20 / 321 = 0.06231 0.00927 ## MoveGap 0 5 3 / 285 = 0.01053 0.01464 ## ReduceConstraint 0 8 5 / 360 = 0.01389 0.01185 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 47 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 884 = 0.00452 0.00291 ## InsertFragment 0 9 4 / 214 = 0.01869 0.00379 ## TwoFragment 0 0 0 / 232 = 0.00000 0.00000 ## CrossOver 7 20 7 / 165 = 0.04242 0.00304 ## CrossAndInsert 2 2 0 / 208 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 259 = 0.00772 0.00897 # generation 56: best score out of 20: T0506.try1 192.69270 cost/residue, 199 clashes 0.07537 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 83 43 / 230 = 0.18696 0.01405 ## JiggleSubtree 1 7 3 / 56 = 0.05357 0.00557 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 31 = 0.00000 0.00000 ## OptSegment 0 0 0 / 53 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 21 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 7 41 17 / 87 = 0.19540 0.00474 ## TweakPhiSegment 5 22 7 / 50 = 0.14000 0.00264 ## TweakPsiSubtree 1 40 18 / 84 = 0.21429 0.00518 ## TweakPsiSegment 0 68 36 / 121 = 0.29752 0.00545 ## TweakPsiPhiSubtree 13 51 27 / 116 = 0.23276 0.00883 ## TweakPsiPhiSegment 24 121 57 / 250 = 0.22800 0.01517 ## TweakHbondSubtree 0 2 0 / 7 = 0.00000 0.00000 ## TweakHbondSegment 0 17 4 / 60 = 0.06667 0.00368 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 46 32 / 101 = 0.31683 0.00311 ## FixOmega 11 24 19 / 168 = 0.11310 0.01392 ## Backrub 19 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 9 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 14 5 / 59 = 0.08475 0.00288 ## ClashingRotamer 0 1 0 / 47 = 0.00000 0.00000 ## ClusteredRotamer 11 11 2 / 80 = 0.02500 0.00049 ## ReduceBreak 0 11 8 / 450 = 0.01778 0.01597 ## CloseGap 0 68 65 / 475 = 0.13684 0.03519 ## HealGap 0 38 20 / 322 = 0.06211 0.00924 ## MoveGap 0 5 3 / 288 = 0.01042 0.01449 ## ReduceConstraint 0 8 5 / 367 = 0.01362 0.01163 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 890 = 0.00449 0.00289 ## InsertFragment 0 9 4 / 219 = 0.01826 0.00371 ## TwoFragment 0 0 0 / 235 = 0.00000 0.00000 ## CrossOver 7 20 7 / 166 = 0.04217 0.00302 ## CrossAndInsert 2 2 0 / 209 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 261 = 0.00766 0.00891 # generation 57: best score out of 20: T0506.try1 192.53526 cost/residue, 197 clashes 0.07226 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 84 43 / 234 = 0.18376 0.01381 ## JiggleSubtree 1 7 3 / 60 = 0.05000 0.00520 ## JiggleSegment 0 2 0 / 15 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 54 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 22 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 7 41 17 / 89 = 0.19101 0.00463 ## TweakPhiSegment 5 22 7 / 51 = 0.13725 0.00258 ## TweakPsiSubtree 2 41 18 / 86 = 0.20930 0.00506 ## TweakPsiSegment 0 68 36 / 123 = 0.29268 0.00536 ## TweakPsiPhiSubtree 13 52 27 / 120 = 0.22500 0.00853 ## TweakPsiPhiSegment 24 124 60 / 255 = 0.23529 0.01582 ## TweakHbondSubtree 0 2 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 17 4 / 60 = 0.06667 0.00368 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 48 33 / 104 = 0.31731 0.00303 ## FixOmega 11 26 20 / 184 = 0.10870 0.01272 ## Backrub 19 0 0 / 1 = 0.00000 0.00000 ## BigBackrub 9 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 15 6 / 64 = 0.09375 0.00282 ## ClashingRotamer 0 1 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 12 11 2 / 83 = 0.02410 0.00047 ## ReduceBreak 0 11 8 / 454 = 0.01762 0.01583 ## CloseGap 0 70 67 / 481 = 0.13929 0.03544 ## HealGap 0 39 20 / 328 = 0.06098 0.00907 ## MoveGap 0 5 3 / 290 = 0.01034 0.01439 ## ReduceConstraint 0 8 5 / 373 = 0.01340 0.01144 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 49 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 901 = 0.00444 0.00285 ## InsertFragment 0 9 4 / 221 = 0.01810 0.00367 ## TwoFragment 0 0 0 / 236 = 0.00000 0.00000 ## CrossOver 8 20 7 / 167 = 0.04192 0.00300 ## CrossAndInsert 2 2 0 / 209 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 265 = 0.00755 0.00877 # Can't patch backbone between (T0506)G206 and (T0506)A207 because distance= 3.983 not near ideal 3.804 # generation 58: best score out of 20: T0506.try1 192.27625 cost/residue, 193 clashes 0.07412 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 84 43 / 241 = 0.17842 0.01341 ## JiggleSubtree 1 8 4 / 63 = 0.06349 0.01155 ## JiggleSegment 0 3 1 / 16 = 0.06250 0.00809 ## OptSubtree 0 0 0 / 33 = 0.00000 0.00000 ## OptSegment 0 0 0 / 55 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 12 = 0.00000 0.00000 ## TweakPhiSubtree 7 42 17 / 94 = 0.18085 0.00439 ## TweakPhiSegment 6 22 7 / 51 = 0.13725 0.00258 ## TweakPsiSubtree 2 42 18 / 91 = 0.19780 0.00478 ## TweakPsiSegment 0 69 38 / 126 = 0.30159 0.00530 ## TweakPsiPhiSubtree 13 57 30 / 130 = 0.23077 0.00855 ## TweakPsiPhiSegment 25 125 61 / 264 = 0.23106 0.01528 ## TweakHbondSubtree 0 2 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 17 4 / 60 = 0.06667 0.00368 ## TweakMultimer 32 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 48 33 / 107 = 0.30841 0.00295 ## FixOmega 11 26 20 / 194 = 0.10309 0.01207 ## Backrub 19 0 0 / 2 = 0.00000 0.00000 ## BigBackrub 10 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 15 6 / 67 = 0.08955 0.00270 ## ClashingRotamer 0 1 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 12 11 2 / 84 = 0.02381 0.00046 ## ReduceBreak 0 11 8 / 462 = 0.01732 0.01556 ## CloseGap 0 71 68 / 491 = 0.13849 0.03505 ## HealGap 0 39 20 / 328 = 0.06098 0.00907 ## MoveGap 0 5 3 / 291 = 0.01031 0.01434 ## ReduceConstraint 0 8 5 / 373 = 0.01340 0.01144 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 50 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 908 = 0.00441 0.00283 ## InsertFragment 0 9 4 / 223 = 0.01794 0.00364 ## TwoFragment 0 0 0 / 237 = 0.00000 0.00000 ## CrossOver 8 20 7 / 169 = 0.04142 0.00296 ## CrossAndInsert 2 2 0 / 212 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 267 = 0.00749 0.00871 Error: Colinear points for locating spot monomeric-50pc-wet-6.5.spot for (T0506)Y130 # generation 59: best score out of 20: T0506.try1 191.98944 cost/residue, 199 clashes 0.07412 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 85 44 / 243 = 0.18107 0.01347 ## JiggleSubtree 1 8 4 / 70 = 0.05714 0.01040 ## JiggleSegment 1 3 1 / 32 = 0.03125 0.00405 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 55 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 13 = 0.00000 0.00000 ## TweakPhiSubtree 7 43 18 / 97 = 0.18557 0.00425 ## TweakPhiSegment 6 23 7 / 52 = 0.13462 0.00254 ## TweakPsiSubtree 2 42 18 / 91 = 0.19780 0.00478 ## TweakPsiSegment 0 70 39 / 128 = 0.30469 0.00525 ## TweakPsiPhiSubtree 13 58 30 / 131 = 0.22901 0.00848 ## TweakPsiPhiSegment 25 127 63 / 271 = 0.23247 0.01491 ## TweakHbondSubtree 0 2 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 17 4 / 61 = 0.06557 0.00362 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 48 33 / 107 = 0.30841 0.00295 ## FixOmega 11 27 21 / 199 = 0.10553 0.01321 ## Backrub 19 0 0 / 2 = 0.00000 0.00000 ## BigBackrub 11 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 15 6 / 69 = 0.08696 0.00262 ## ClashingRotamer 0 1 0 / 48 = 0.00000 0.00000 ## ClusteredRotamer 12 11 2 / 86 = 0.02326 0.00045 ## ReduceBreak 0 11 8 / 467 = 0.01713 0.01539 ## CloseGap 0 76 71 / 501 = 0.14172 0.03506 ## HealGap 0 39 20 / 330 = 0.06061 0.00901 ## MoveGap 0 5 3 / 295 = 0.01017 0.01414 ## ReduceConstraint 0 8 5 / 378 = 0.01323 0.01129 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 52 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 916 = 0.00437 0.00280 ## InsertFragment 0 9 4 / 225 = 0.01778 0.00361 ## TwoFragment 0 0 0 / 242 = 0.00000 0.00000 ## CrossOver 8 20 7 / 169 = 0.04142 0.00296 ## CrossAndInsert 2 2 0 / 215 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 270 = 0.00741 0.00861 # Can't patch backbone between (T0506)G206 and (T0506)A207 because distance= 3.983 not near ideal 3.804 # generation 60: best score out of 20: T0506.try1 191.97643 cost/residue, 202 clashes 0.07697 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 87 45 / 249 = 0.18072 0.01346 ## JiggleSubtree 1 8 4 / 77 = 0.05195 0.00945 ## JiggleSegment 1 3 1 / 36 = 0.02778 0.00360 ## OptSubtree 0 0 0 / 34 = 0.00000 0.00000 ## OptSegment 0 0 0 / 55 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 23 = 0.00000 0.00000 ## ShiftSubtree 0 1 0 / 15 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 14 = 0.00000 0.00000 ## TweakPhiSubtree 7 43 18 / 98 = 0.18367 0.00421 ## TweakPhiSegment 6 25 7 / 54 = 0.12963 0.00244 ## TweakPsiSubtree 2 43 19 / 96 = 0.19792 0.00467 ## TweakPsiSegment 0 71 40 / 130 = 0.30769 0.00527 ## TweakPsiPhiSubtree 13 60 31 / 135 = 0.22963 0.00853 ## TweakPsiPhiSegment 25 129 65 / 277 = 0.23466 0.01495 ## TweakHbondSubtree 0 2 0 / 8 = 0.00000 0.00000 ## TweakHbondSegment 0 18 4 / 62 = 0.06452 0.00356 ## TweakMultimer 33 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 13 49 33 / 108 = 0.30556 0.00292 ## FixOmega 11 27 21 / 206 = 0.10194 0.01276 ## Backrub 19 0 0 / 2 = 0.00000 0.00000 ## BigBackrub 11 2 0 / 5 = 0.00000 0.00000 ## OneRotamer 0 15 6 / 71 = 0.08451 0.00255 ## ClashingRotamer 0 1 0 / 50 = 0.00000 0.00000 ## ClusteredRotamer 12 11 2 / 87 = 0.02299 0.00045 ## ReduceBreak 0 11 8 / 470 = 0.01702 0.01529 ## CloseGap 0 76 72 / 509 = 0.14145 0.03466 ## HealGap 0 40 20 / 333 = 0.06006 0.00893 ## MoveGap 0 5 3 / 300 = 0.01000 0.01391 ## ReduceConstraint 0 8 5 / 382 = 0.01309 0.01117 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 53 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 4 / 927 = 0.00431 0.00277 ## InsertFragment 0 9 4 / 227 = 0.01762 0.00358 ## TwoFragment 0 0 0 / 246 = 0.00000 0.00000 ## CrossOver 8 20 7 / 169 = 0.04142 0.00296 ## CrossAndInsert 2 2 0 / 221 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 271 = 0.00738 0.00858 # request to SCWRL produces command: ulimit -t 229 ; scwrl3 -i /var/tmp/to_scwrl_1248761485.pdb -s /var/tmp/to_scwrl_1248761485.seq -o /var/tmp/from_scwrl_1248761485.pdb > /var/tmp/scwrl_1248761485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1248761485.pdb # T0506.try1-scwrl 189.97021 cost/residue 186 clashes 0.07698 breaks # iteration 2 # filling pool to have 20 conformations # best score in initial pool out of 20: T0506.try1-al4 at pool[16] 209.91869 cost/residue, 319 clashes 0.18172 breaks # optimizing backbone with 20 conformations in pool # doing 60 generations, with 100 new conformations in each generation. # keep at most 8 conformations from old pool # generation 1: best score out of 20: T0506.try1-al4 209.91754 cost/residue, 319 clashes 0.18172 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSubtree 0 0 0 / 0 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 1 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.00057 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 1 0 / 1 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 0 0 / 0 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 0 2 0 / 3 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 11 = 0.00000 0.00000 ## CloseGap 0 1 2 / 4 = 0.50000 1.63731 ## HealGap 0 0 0 / 8 = 0.00000 0.00000 ## MoveGap 0 1 0 / 5 = 0.00000 0.00000 ## ReduceConstraint 0 0 0 / 4 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 3 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 25 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 3 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 6 = 0.00000 0.00000 ## CrossOver 0 0 0 / 3 = 0.00000 0.00000 ## CrossAndInsert 0 0 0 / 6 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 5 = 0.00000 0.00000 # generation 2: best score out of 20: T0506.try1 207.56534 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 2 0 / 3 = 0.00000 0.00000 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 3 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.00057 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakHbondSegment 0 1 1 / 1 = 1.00000 0.00931 ## TweakMultimer 1 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 2 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 0 0 0 / 0 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 1 0 / 1 = 0.00000 0.00000 ## ClashingRotamer 0 0 0 / 3 = 0.00000 0.00000 ## ClusteredRotamer 1 2 0 / 5 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 19 = 0.00000 0.00000 ## CloseGap 0 3 4 / 14 = 0.28571 0.93530 ## HealGap 0 2 0 / 18 = 0.00000 0.00000 ## MoveGap 0 1 0 / 10 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 10 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 4 = 0.00000 0.00000 ## InsertSpecificFragment 0 2 0 / 45 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 8 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 9 = 0.00000 0.00000 ## CrossOver 0 0 0 / 6 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 14 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 14 = 0.00000 0.00000 Error: Colinear points for locating spot monomeric-50pc-wet-6.5.spot for (T0506)Y130 # generation 3: best score out of 20: T0506.try1 207.56534 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 3 1 / 4 = 0.25000 0.00118 ## JiggleSubtree 0 1 0 / 1 = 0.00000 0.00000 ## JiggleSegment 0 0 0 / 0 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPsiSegment 0 1 1 / 2 = 0.50000 0.00057 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 2 1 / 2 = 0.50000 0.00465 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 2 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 1 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 1 / 3 = 0.33333 0.00113 ## ClashingRotamer 0 0 0 / 4 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 7 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 29 = 0.00000 0.00000 ## CloseGap 0 3 4 / 25 = 0.16000 0.52377 ## HealGap 0 3 0 / 23 = 0.00000 0.00000 ## MoveGap 0 1 0 / 13 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 15 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 5 = 0.00000 0.00000 ## InsertSpecificFragment 0 3 0 / 68 = 0.00000 0.00000 ## InsertFragment 0 0 0 / 11 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 19 = 0.00000 0.00000 ## CrossOver 0 1 0 / 10 = 0.00000 0.00000 ## CrossAndInsert 0 1 0 / 18 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 19 = 0.00000 0.00000 # generation 4: best score out of 20: T0506.try1 207.56534 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 6 = 0.16667 0.00079 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 1 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 4 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 2 0 / 2 = 0.00000 0.00000 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00038 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 4 = 0.25000 0.00233 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 2 0 / 2 = 0.00000 0.00000 ## FixOmega 0 0 0 / 0 = 0.00000 0.00000 ## Backrub 2 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 3 1 / 3 = 0.33333 0.00113 ## ClashingRotamer 0 0 0 / 5 = 0.00000 0.00000 ## ClusteredRotamer 2 2 0 / 8 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 32 = 0.00000 0.00000 ## CloseGap 0 5 4 / 33 = 0.12121 0.39679 ## HealGap 0 3 0 / 28 = 0.00000 0.00000 ## MoveGap 0 1 0 / 22 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 25 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 8 = 0.00000 0.00000 ## InsertSpecificFragment 0 4 0 / 92 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 18 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 27 = 0.00000 0.00000 ## CrossOver 0 3 1 / 14 = 0.07143 0.02614 ## CrossAndInsert 0 1 0 / 22 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 24 = 0.00000 0.00000 # generation 5: best score out of 20: T0506.try1 207.56534 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 6 = 0.16667 0.00079 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 2 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 6 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 0 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 3 1 / 3 = 0.33333 0.02467 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00038 ## TweakPsiPhiSubtree 0 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 2 0 / 2 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 4 = 0.25000 0.00233 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 3 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 3 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 5 1 / 5 = 0.20000 0.00068 ## ClashingRotamer 0 1 0 / 6 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 10 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 32 = 0.00000 0.00000 ## CloseGap 0 6 4 / 51 = 0.07843 0.25675 ## HealGap 0 4 0 / 33 = 0.00000 0.00000 ## MoveGap 0 2 0 / 27 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 31 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 10 = 0.00000 0.00000 ## InsertSpecificFragment 0 5 0 / 118 = 0.00000 0.00000 ## InsertFragment 0 1 0 / 26 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 31 = 0.00000 0.00000 ## CrossOver 0 5 1 / 19 = 0.05263 0.01926 ## CrossAndInsert 0 1 0 / 24 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 32 = 0.00000 0.00000 # generation 6: best score out of 20: T0506.try1 207.56534 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 4 1 / 6 = 0.16667 0.00079 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakPhiSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPsiSubtree 0 5 2 / 5 = 0.40000 0.01487 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00038 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 4 = 0.25000 0.00233 ## TweakMultimer 2 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 3 = 0.00000 0.00000 ## FixOmega 0 0 0 / 1 = 0.00000 0.00000 ## Backrub 3 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 6 1 / 6 = 0.16667 0.00057 ## ClashingRotamer 0 1 0 / 9 = 0.00000 0.00000 ## ClusteredRotamer 2 3 0 / 11 = 0.00000 0.00000 ## ReduceBreak 0 2 0 / 38 = 0.00000 0.00000 ## CloseGap 0 7 4 / 64 = 0.06250 0.20460 ## HealGap 0 5 0 / 38 = 0.00000 0.00000 ## MoveGap 0 3 0 / 30 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 35 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 12 = 0.00000 0.00000 ## InsertSpecificFragment 0 7 1 / 142 = 0.00704 0.00020 ## InsertFragment 0 1 0 / 34 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 37 = 0.00000 0.00000 ## CrossOver 0 8 1 / 24 = 0.04167 0.01525 ## CrossAndInsert 0 1 0 / 31 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 37 = 0.00000 0.00000 # generation 7: best score out of 20: T0506.try1 207.56534 cost/residue, 278 clashes 0.18160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 7 = 0.14286 0.00067 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 3 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 8 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 2 = 0.50000 0.03510 ## TweakPsiSubtree 0 7 3 / 7 = 0.42857 0.01065 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00038 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 4 = 0.25000 0.00233 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 3 = 0.00000 0.00000 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 6 1 / 8 = 0.12500 0.00043 ## ClashingRotamer 0 2 0 / 10 = 0.00000 0.00000 ## ClusteredRotamer 2 5 2 / 15 = 0.13333 0.03917 ## ReduceBreak 0 2 0 / 41 = 0.00000 0.00000 ## CloseGap 0 7 4 / 81 = 0.04938 0.16166 ## HealGap 0 6 0 / 45 = 0.00000 0.00000 ## MoveGap 0 4 0 / 38 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 37 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 13 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 1 / 166 = 0.00602 0.00017 ## InsertFragment 0 2 0 / 38 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 46 = 0.00000 0.00000 ## CrossOver 0 9 1 / 28 = 0.03571 0.01307 ## CrossAndInsert 0 1 0 / 32 = 0.00000 0.00000 ## ReduceClash 0 1 0 / 43 = 0.00000 0.00000 # generation 8: best score out of 20: T0506.try1 207.42856 cost/residue, 274 clashes 0.17971 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 7 = 0.14286 0.00067 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 6 = 0.00000 0.00000 ## OptSegment 0 0 0 / 10 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 1 1 / 3 = 0.33333 0.02340 ## TweakPsiSubtree 0 10 5 / 10 = 0.50000 0.02123 ## TweakPsiSegment 0 2 1 / 3 = 0.33333 0.00038 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 4 1 / 4 = 0.25000 0.00233 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 3 = 0.00000 0.00000 ## FixOmega 0 0 0 / 2 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 8 2 / 10 = 0.20000 0.00321 ## ClashingRotamer 0 3 0 / 13 = 0.00000 0.00000 ## ClusteredRotamer 3 7 2 / 20 = 0.10000 0.02938 ## ReduceBreak 0 2 0 / 46 = 0.00000 0.00000 ## CloseGap 0 7 4 / 93 = 0.04301 0.14080 ## HealGap 0 6 0 / 51 = 0.00000 0.00000 ## MoveGap 0 4 0 / 45 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 44 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 14 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 1 / 181 = 0.00552 0.00015 ## InsertFragment 0 2 0 / 44 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 51 = 0.00000 0.00000 ## CrossOver 0 12 3 / 34 = 0.08824 0.01555 ## CrossAndInsert 0 1 0 / 38 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 50 = 0.00000 0.00000 # generation 9: best score out of 20: T0506.try1 207.26337 cost/residue, 273 clashes 0.17950 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 7 = 0.14286 0.00067 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 12 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 1 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 4 2 / 6 = 0.33333 0.01170 ## TweakPsiSubtree 0 10 5 / 10 = 0.50000 0.02123 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00029 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 1 0 / 1 = 0.00000 0.00000 ## TweakHbondSegment 0 5 2 / 5 = 0.40000 0.01677 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 4 = 0.00000 0.00000 ## FixOmega 0 0 0 / 3 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 11 2 / 13 = 0.15385 0.00247 ## ClashingRotamer 0 3 0 / 16 = 0.00000 0.00000 ## ClusteredRotamer 4 7 2 / 24 = 0.08333 0.02448 ## ReduceBreak 0 2 0 / 54 = 0.00000 0.00000 ## CloseGap 0 8 4 / 111 = 0.03604 0.11797 ## HealGap 0 9 1 / 56 = 0.01786 0.00295 ## MoveGap 0 4 0 / 49 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 47 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 1 / 198 = 0.00505 0.00014 ## InsertFragment 0 2 0 / 49 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 54 = 0.00000 0.00000 ## CrossOver 0 12 3 / 41 = 0.07317 0.01290 ## CrossAndInsert 1 1 0 / 44 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 53 = 0.00000 0.00000 # generation 10: best score out of 20: T0506.try1 207.26337 cost/residue, 273 clashes 0.17950 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 7 = 0.14286 0.00067 ## JiggleSubtree 0 1 0 / 2 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 13 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 1 0 / 2 = 0.00000 0.00000 ## TweakPhiSegment 0 4 2 / 7 = 0.28571 0.01003 ## TweakPsiSubtree 0 13 6 / 13 = 0.46154 0.02001 ## TweakPsiSegment 0 3 1 / 4 = 0.25000 0.00029 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 2 1 / 3 = 0.33333 0.06563 ## TweakHbondSegment 0 8 2 / 10 = 0.20000 0.00839 ## TweakMultimer 3 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 3 0 / 4 = 0.00000 0.00000 ## FixOmega 0 1 0 / 4 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 12 2 / 14 = 0.14286 0.00229 ## ClashingRotamer 0 4 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 6 7 2 / 27 = 0.07407 0.02176 ## ReduceBreak 0 2 0 / 57 = 0.00000 0.00000 ## CloseGap 0 10 4 / 133 = 0.03008 0.09845 ## HealGap 0 9 1 / 64 = 0.01562 0.00258 ## MoveGap 0 4 0 / 55 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 52 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 15 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 1 / 222 = 0.00450 0.00013 ## InsertFragment 0 2 0 / 52 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 54 = 0.00000 0.00000 ## CrossOver 0 12 3 / 43 = 0.06977 0.01230 ## CrossAndInsert 1 1 0 / 50 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 54 = 0.00000 0.00000 # generation 11: best score out of 20: T0506.try1 207.26337 cost/residue, 273 clashes 0.17950 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 7 = 0.14286 0.00067 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 4 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 5 3 / 8 = 0.37500 0.00878 ## TweakPsiSubtree 0 13 6 / 14 = 0.42857 0.01858 ## TweakPsiSegment 0 4 2 / 5 = 0.40000 0.00054 ## TweakPsiPhiSubtree 1 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 8 1 / 11 = 0.09091 0.01790 ## TweakHbondSegment 0 8 2 / 11 = 0.18182 0.00762 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 5 = 0.00000 0.00000 ## FixOmega 0 1 0 / 4 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 12 2 / 16 = 0.12500 0.00200 ## ClashingRotamer 0 4 0 / 18 = 0.00000 0.00000 ## ClusteredRotamer 9 8 2 / 30 = 0.06667 0.01958 ## ReduceBreak 0 2 0 / 62 = 0.00000 0.00000 ## CloseGap 0 10 4 / 139 = 0.02878 0.09420 ## HealGap 0 9 1 / 71 = 0.01408 0.00233 ## MoveGap 0 4 0 / 59 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 58 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 1 / 250 = 0.00400 0.00011 ## InsertFragment 0 2 0 / 55 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 58 = 0.00000 0.00000 ## CrossOver 0 13 3 / 46 = 0.06522 0.01150 ## CrossAndInsert 1 1 0 / 53 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 63 = 0.00000 0.00000 # generation 12: best score out of 20: T0506.try1 207.26337 cost/residue, 273 clashes 0.17950 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 7 = 0.14286 0.00067 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 7 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 0 7 4 / 10 = 0.40000 0.00702 ## TweakPsiSubtree 0 19 8 / 21 = 0.38095 0.01300 ## TweakPsiSegment 0 4 2 / 6 = 0.33333 0.00045 ## TweakPsiPhiSubtree 2 0 0 / 0 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 3 0 / 3 = 0.00000 0.00000 ## TweakHbondSubtree 0 10 2 / 14 = 0.14286 0.01893 ## TweakHbondSegment 0 8 2 / 12 = 0.16667 0.00699 ## TweakMultimer 4 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 5 = 0.00000 0.00000 ## FixOmega 0 1 0 / 4 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 13 2 / 18 = 0.11111 0.00178 ## ClashingRotamer 0 4 0 / 19 = 0.00000 0.00000 ## ClusteredRotamer 10 8 2 / 32 = 0.06250 0.01836 ## ReduceBreak 0 2 0 / 66 = 0.00000 0.00000 ## CloseGap 0 10 4 / 155 = 0.02581 0.08448 ## HealGap 0 9 1 / 76 = 0.01316 0.00217 ## MoveGap 0 4 0 / 61 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 62 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 16 = 0.00000 0.00000 ## InsertSpecificFragment 0 9 1 / 274 = 0.00365 0.00010 ## InsertFragment 0 2 0 / 59 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 61 = 0.00000 0.00000 ## CrossOver 0 14 3 / 51 = 0.05882 0.01037 ## CrossAndInsert 1 1 0 / 61 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 66 = 0.00000 0.00000 # generation 13: best score out of 20: T0506.try1 207.26337 cost/residue, 273 clashes 0.17950 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 5 1 / 7 = 0.14286 0.00067 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 5 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 1 8 4 / 11 = 0.36364 0.00639 ## TweakPsiSubtree 0 23 8 / 25 = 0.32000 0.01092 ## TweakPsiSegment 0 4 2 / 6 = 0.33333 0.00045 ## TweakPsiPhiSubtree 2 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 14 2 / 21 = 0.09524 0.01262 ## TweakHbondSegment 0 8 2 / 15 = 0.13333 0.00559 ## TweakMultimer 5 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 6 = 0.00000 0.00000 ## FixOmega 0 1 0 / 5 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 14 2 / 21 = 0.09524 0.00153 ## ClashingRotamer 0 4 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 12 8 2 / 36 = 0.05556 0.01632 ## ReduceBreak 0 2 0 / 72 = 0.00000 0.00000 ## CloseGap 0 10 4 / 169 = 0.02367 0.07748 ## HealGap 0 9 1 / 85 = 0.01176 0.00194 ## MoveGap 0 4 0 / 63 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 67 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 17 = 0.00000 0.00000 ## InsertSpecificFragment 0 10 1 / 288 = 0.00347 0.00010 ## InsertFragment 0 2 0 / 69 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 64 = 0.00000 0.00000 ## CrossOver 0 14 3 / 52 = 0.05769 0.01017 ## CrossAndInsert 1 1 0 / 64 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 70 = 0.00000 0.00000 # generation 14: best score out of 20: T0506.try1 206.94386 cost/residue, 270 clashes 0.17950 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 8 = 0.12500 0.00059 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 8 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 0 / 3 = 0.00000 0.00000 ## TweakPhiSegment 1 10 5 / 14 = 0.35714 0.00678 ## TweakPsiSubtree 0 26 8 / 31 = 0.25806 0.00881 ## TweakPsiSegment 0 4 2 / 6 = 0.33333 0.00045 ## TweakPsiPhiSubtree 2 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 4 0 / 4 = 0.00000 0.00000 ## TweakHbondSubtree 0 16 2 / 24 = 0.08333 0.01104 ## TweakHbondSegment 0 9 2 / 19 = 0.10526 0.00441 ## TweakMultimer 7 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 4 0 / 6 = 0.00000 0.00000 ## FixOmega 0 1 0 / 6 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 16 3 / 23 = 0.13043 0.01718 ## ClashingRotamer 0 4 0 / 20 = 0.00000 0.00000 ## ClusteredRotamer 14 8 2 / 40 = 0.05000 0.01469 ## ReduceBreak 0 2 0 / 75 = 0.00000 0.00000 ## CloseGap 0 10 4 / 184 = 0.02174 0.07116 ## HealGap 0 9 1 / 92 = 0.01087 0.00180 ## MoveGap 0 4 0 / 68 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 73 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 2 / 305 = 0.00656 0.00095 ## InsertFragment 0 2 0 / 74 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 68 = 0.00000 0.00000 ## CrossOver 0 14 3 / 55 = 0.05455 0.00962 ## CrossAndInsert 2 1 0 / 68 = 0.00000 0.00000 ## ReduceClash 0 2 0 / 75 = 0.00000 0.00000 # generation 15: best score out of 20: T0506.try1 206.73161 cost/residue, 272 clashes 0.18013 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 11 = 0.09091 0.00043 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 9 = 0.00000 0.00000 ## OptSegment 0 0 0 / 14 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 2 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 2 1 / 5 = 0.20000 0.00995 ## TweakPhiSegment 2 11 6 / 15 = 0.40000 0.00661 ## TweakPsiSubtree 0 27 9 / 32 = 0.28125 0.00854 ## TweakPsiSegment 0 6 3 / 8 = 0.37500 0.00054 ## TweakPsiPhiSubtree 2 0 0 / 1 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 5 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 19 2 / 28 = 0.07143 0.00947 ## TweakHbondSegment 0 10 2 / 22 = 0.09091 0.00381 ## TweakMultimer 8 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 0 / 7 = 0.00000 0.00000 ## FixOmega 0 1 0 / 6 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 0 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 17 3 / 31 = 0.09677 0.01275 ## ClashingRotamer 0 4 0 / 21 = 0.00000 0.00000 ## ClusteredRotamer 15 8 2 / 44 = 0.04545 0.01335 ## ReduceBreak 0 2 0 / 79 = 0.00000 0.00000 ## CloseGap 0 10 4 / 197 = 0.02030 0.06647 ## HealGap 0 9 1 / 97 = 0.01031 0.00170 ## MoveGap 0 4 0 / 76 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 77 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 18 = 0.00000 0.00000 ## InsertSpecificFragment 0 11 2 / 320 = 0.00625 0.00091 ## InsertFragment 0 2 0 / 79 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 71 = 0.00000 0.00000 ## CrossOver 0 14 3 / 58 = 0.05172 0.00912 ## CrossAndInsert 2 1 0 / 71 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 79 = 0.01266 0.00645 # generation 16: best score out of 20: T0506.try1 206.71198 cost/residue, 272 clashes 0.18013 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 11 = 0.09091 0.00043 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 6 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 10 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 4 1 / 8 = 0.12500 0.00622 ## TweakPhiSegment 2 12 7 / 17 = 0.41176 0.00583 ## TweakPsiSubtree 0 28 9 / 34 = 0.26471 0.00804 ## TweakPsiSegment 0 6 3 / 8 = 0.37500 0.00054 ## TweakPsiPhiSubtree 2 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 5 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 20 3 / 31 = 0.09677 0.01092 ## TweakHbondSegment 0 10 2 / 22 = 0.09091 0.00381 ## TweakMultimer 9 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 0 / 7 = 0.00000 0.00000 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 19 3 / 35 = 0.08571 0.01129 ## ClashingRotamer 0 5 1 / 25 = 0.04000 0.00517 ## ClusteredRotamer 15 8 2 / 45 = 0.04444 0.01306 ## ReduceBreak 0 2 0 / 80 = 0.00000 0.00000 ## CloseGap 0 10 4 / 206 = 0.01942 0.06356 ## HealGap 0 10 2 / 101 = 0.01980 0.00183 ## MoveGap 0 4 0 / 84 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 83 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 19 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 346 = 0.00867 0.00134 ## InsertFragment 0 2 0 / 82 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 73 = 0.00000 0.00000 ## CrossOver 0 14 3 / 65 = 0.04615 0.00814 ## CrossAndInsert 2 1 0 / 73 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 86 = 0.01163 0.00593 # generation 17: best score out of 20: T0506.try1 206.43143 cost/residue, 271 clashes 0.17221 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 11 = 0.09091 0.00043 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 11 = 0.00000 0.00000 ## OptSegment 0 0 0 / 15 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 8 1 / 12 = 0.08333 0.00414 ## TweakPhiSegment 2 14 9 / 19 = 0.47368 0.00522 ## TweakPsiSubtree 0 29 10 / 35 = 0.28571 0.00915 ## TweakPsiSegment 0 7 3 / 9 = 0.33333 0.00048 ## TweakPsiPhiSubtree 2 1 0 / 2 = 0.00000 0.00000 ## TweakPsiPhiSegment 1 5 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 20 3 / 33 = 0.09091 0.01026 ## TweakHbondSegment 0 10 2 / 22 = 0.09091 0.00381 ## TweakMultimer 10 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 0 / 7 = 0.00000 0.00000 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 5 1 0 / 1 = 0.00000 0.00000 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 21 4 / 40 = 0.10000 0.01330 ## ClashingRotamer 0 5 1 / 30 = 0.03333 0.00431 ## ClusteredRotamer 16 8 2 / 49 = 0.04082 0.01199 ## ReduceBreak 0 2 0 / 83 = 0.00000 0.00000 ## CloseGap 0 11 5 / 219 = 0.02283 0.06134 ## HealGap 0 10 2 / 106 = 0.01887 0.00174 ## MoveGap 0 4 0 / 90 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 86 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 362 = 0.00829 0.00128 ## InsertFragment 0 2 0 / 87 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 78 = 0.00000 0.00000 ## CrossOver 0 15 4 / 71 = 0.05634 0.00745 ## CrossAndInsert 2 1 0 / 79 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 91 = 0.01099 0.00560 # generation 18: best score out of 20: T0506.try1 206.43143 cost/residue, 271 clashes 0.17221 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 11 = 0.09091 0.00043 ## JiggleSubtree 0 1 0 / 3 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 12 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 9 1 / 14 = 0.07143 0.00355 ## TweakPhiSegment 3 15 10 / 22 = 0.45455 0.00536 ## TweakPsiSubtree 0 30 10 / 37 = 0.27027 0.00866 ## TweakPsiSegment 0 7 3 / 9 = 0.33333 0.00048 ## TweakPsiPhiSubtree 2 1 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 5 = 0.00000 0.00000 ## TweakHbondSubtree 0 23 3 / 37 = 0.08108 0.00915 ## TweakHbondSegment 0 10 2 / 22 = 0.09091 0.00381 ## TweakMultimer 11 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 5 0 / 7 = 0.00000 0.00000 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 5 2 1 / 2 = 0.50000 0.00294 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 26 4 / 52 = 0.07692 0.01023 ## ClashingRotamer 0 5 1 / 36 = 0.02778 0.00359 ## ClusteredRotamer 16 8 2 / 54 = 0.03704 0.01088 ## ReduceBreak 0 2 0 / 87 = 0.00000 0.00000 ## CloseGap 0 11 5 / 230 = 0.02174 0.05841 ## HealGap 0 10 2 / 110 = 0.01818 0.00168 ## MoveGap 0 4 0 / 94 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 90 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 378 = 0.00794 0.00123 ## InsertFragment 0 2 0 / 91 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 80 = 0.00000 0.00000 ## CrossOver 0 15 4 / 75 = 0.05333 0.00705 ## CrossAndInsert 2 1 0 / 80 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 99 = 0.01010 0.00515 # generation 19: best score out of 20: T0506.try1 206.34274 cost/residue, 268 clashes 0.17242 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 11 = 0.09091 0.00043 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 7 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 5 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 1 = 0.00000 0.00000 ## TweakPhiSubtree 0 10 2 / 15 = 0.13333 0.00332 ## TweakPhiSegment 4 15 10 / 22 = 0.45455 0.00536 ## TweakPsiSubtree 0 33 11 / 42 = 0.26190 0.00773 ## TweakPsiSegment 0 9 3 / 12 = 0.25000 0.00036 ## TweakPsiPhiSubtree 2 1 0 / 3 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 23 3 / 37 = 0.08108 0.00915 ## TweakHbondSegment 0 11 3 / 24 = 0.12500 0.00561 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 8 = 0.12500 0.00014 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 10 2 1 / 2 = 0.50000 0.00294 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 27 5 / 56 = 0.08929 0.01049 ## ClashingRotamer 0 5 1 / 38 = 0.02632 0.00340 ## ClusteredRotamer 17 8 2 / 58 = 0.03448 0.01013 ## ReduceBreak 0 2 0 / 89 = 0.00000 0.00000 ## CloseGap 0 11 5 / 245 = 0.02041 0.05483 ## HealGap 0 10 2 / 113 = 0.01770 0.00164 ## MoveGap 0 4 0 / 97 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 92 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 20 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 396 = 0.00758 0.00117 ## InsertFragment 0 2 0 / 94 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 84 = 0.00000 0.00000 ## CrossOver 0 18 5 / 83 = 0.06024 0.00744 ## CrossAndInsert 2 1 0 / 88 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 107 = 0.00935 0.00477 # generation 20: best score out of 20: T0506.try1 206.34274 cost/residue, 268 clashes 0.17242 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 12 = 0.08333 0.00039 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 9 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 14 = 0.00000 0.00000 ## OptSegment 0 0 0 / 16 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 13 2 / 19 = 0.10526 0.00262 ## TweakPhiSegment 5 15 10 / 22 = 0.45455 0.00536 ## TweakPsiSubtree 0 36 13 / 45 = 0.28889 0.00815 ## TweakPsiSegment 0 9 3 / 12 = 0.25000 0.00036 ## TweakPsiPhiSubtree 2 2 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 26 4 / 41 = 0.09756 0.00888 ## TweakHbondSegment 0 12 4 / 27 = 0.14815 0.00655 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 8 = 0.12500 0.00014 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 12 2 1 / 2 = 0.50000 0.00294 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 28 5 / 65 = 0.07692 0.00904 ## ClashingRotamer 0 5 1 / 39 = 0.02564 0.00331 ## ClusteredRotamer 18 8 2 / 63 = 0.03175 0.00933 ## ReduceBreak 0 2 0 / 92 = 0.00000 0.00000 ## CloseGap 0 11 5 / 251 = 0.01992 0.05352 ## HealGap 0 10 2 / 116 = 0.01724 0.00159 ## MoveGap 0 4 0 / 102 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 97 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 415 = 0.00723 0.00112 ## InsertFragment 0 2 0 / 101 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 88 = 0.00000 0.00000 ## CrossOver 0 18 5 / 84 = 0.05952 0.00735 ## CrossAndInsert 2 1 0 / 91 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 113 = 0.00885 0.00451 # generation 21: best score out of 20: T0506.try1 206.08966 cost/residue, 265 clashes 0.17345 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 12 = 0.08333 0.00039 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 15 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 6 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 15 3 / 22 = 0.13636 0.00277 ## TweakPhiSegment 5 15 10 / 24 = 0.41667 0.00492 ## TweakPsiSubtree 0 37 13 / 46 = 0.28261 0.00797 ## TweakPsiSegment 0 9 3 / 12 = 0.25000 0.00036 ## TweakPsiPhiSubtree 2 2 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 28 5 / 43 = 0.11628 0.00848 ## TweakHbondSegment 0 16 7 / 33 = 0.21212 0.02032 ## TweakMultimer 12 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 8 = 0.12500 0.00014 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 18 4 1 / 6 = 0.16667 0.00098 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 28 5 / 66 = 0.07576 0.00890 ## ClashingRotamer 0 5 1 / 41 = 0.02439 0.00315 ## ClusteredRotamer 18 8 2 / 64 = 0.03125 0.00918 ## ReduceBreak 0 2 0 / 98 = 0.00000 0.00000 ## CloseGap 0 11 5 / 262 = 0.01908 0.05128 ## HealGap 0 10 2 / 119 = 0.01681 0.00155 ## MoveGap 0 4 0 / 108 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 100 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 22 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 430 = 0.00698 0.00108 ## InsertFragment 0 2 0 / 101 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 93 = 0.00000 0.00000 ## CrossOver 0 19 6 / 93 = 0.06452 0.00856 ## CrossAndInsert 2 1 0 / 96 = 0.00000 0.00000 ## ReduceClash 0 3 1 / 125 = 0.00800 0.00408 # generation 22: best score out of 20: T0506.try1 205.91400 cost/residue, 258 clashes 0.17300 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 12 = 0.08333 0.00039 ## JiggleSubtree 0 1 0 / 4 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 17 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 15 3 / 22 = 0.13636 0.00277 ## TweakPhiSegment 5 15 10 / 25 = 0.40000 0.00472 ## TweakPsiSubtree 0 40 15 / 49 = 0.30612 0.00780 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00031 ## TweakPsiPhiSubtree 2 2 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 29 6 / 46 = 0.13043 0.01174 ## TweakHbondSegment 0 19 8 / 41 = 0.19512 0.01689 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 10 = 0.10000 0.00011 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 18 4 1 / 6 = 0.16667 0.00098 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 30 6 / 72 = 0.08333 0.00883 ## ClashingRotamer 0 5 1 / 42 = 0.02381 0.00308 ## ClusteredRotamer 18 8 2 / 66 = 0.03030 0.00890 ## ReduceBreak 0 2 0 / 104 = 0.00000 0.00000 ## CloseGap 0 11 5 / 275 = 0.01818 0.04885 ## HealGap 0 10 2 / 123 = 0.01626 0.00150 ## MoveGap 0 4 0 / 110 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 100 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 24 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 448 = 0.00670 0.00103 ## InsertFragment 0 2 0 / 101 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 98 = 0.00000 0.00000 ## CrossOver 0 20 7 / 98 = 0.07143 0.00857 ## CrossAndInsert 2 1 0 / 100 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 136 = 0.01471 0.00402 # generation 23: best score out of 20: T0506.try1 205.91400 cost/residue, 258 clashes 0.17300 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 13 = 0.07692 0.00036 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 16 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 16 3 / 23 = 0.13043 0.00265 ## TweakPhiSegment 5 15 10 / 26 = 0.38462 0.00454 ## TweakPsiSubtree 0 41 15 / 51 = 0.29412 0.00749 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00031 ## TweakPsiPhiSubtree 2 2 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 31 7 / 51 = 0.13725 0.01062 ## TweakHbondSegment 0 23 8 / 48 = 0.16667 0.01443 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 10 = 0.10000 0.00011 ## FixOmega 0 2 0 / 7 = 0.00000 0.00000 ## Backrub 20 4 1 / 6 = 0.16667 0.00098 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 32 6 / 76 = 0.07895 0.00836 ## ClashingRotamer 0 5 1 / 46 = 0.02174 0.00281 ## ClusteredRotamer 18 8 2 / 71 = 0.02817 0.00827 ## ReduceBreak 0 2 0 / 107 = 0.00000 0.00000 ## CloseGap 0 12 5 / 283 = 0.01767 0.04747 ## HealGap 0 10 2 / 125 = 0.01600 0.00148 ## MoveGap 0 4 0 / 114 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 107 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 465 = 0.00645 0.00100 ## InsertFragment 0 2 0 / 107 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 99 = 0.00000 0.00000 ## CrossOver 0 20 7 / 103 = 0.06796 0.00815 ## CrossAndInsert 2 1 0 / 106 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 143 = 0.01399 0.00383 # generation 24: best score out of 20: T0506.try1 205.59729 cost/residue, 259 clashes 0.17160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 13 = 0.07692 0.00036 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 17 3 / 24 = 0.12500 0.00254 ## TweakPhiSegment 5 17 11 / 29 = 0.37931 0.00450 ## TweakPsiSubtree 0 43 16 / 54 = 0.29630 0.00780 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00031 ## TweakPsiPhiSubtree 2 2 0 / 5 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 6 = 0.00000 0.00000 ## TweakHbondSubtree 0 35 7 / 58 = 0.12069 0.00934 ## TweakHbondSegment 0 25 10 / 57 = 0.17544 0.02144 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 10 = 0.10000 0.00011 ## FixOmega 0 2 0 / 8 = 0.00000 0.00000 ## Backrub 20 4 1 / 7 = 0.14286 0.00084 ## BigBackrub 1 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 36 8 / 84 = 0.09524 0.00768 ## ClashingRotamer 0 5 1 / 47 = 0.02128 0.00275 ## ClusteredRotamer 18 8 2 / 74 = 0.02703 0.00794 ## ReduceBreak 0 2 0 / 111 = 0.00000 0.00000 ## CloseGap 0 12 5 / 291 = 0.01718 0.04617 ## HealGap 0 10 2 / 131 = 0.01527 0.00141 ## MoveGap 0 4 0 / 118 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 111 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 26 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 480 = 0.00625 0.00097 ## InsertFragment 0 2 0 / 110 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 105 = 0.00000 0.00000 ## CrossOver 0 20 7 / 107 = 0.06542 0.00785 ## CrossAndInsert 2 1 0 / 107 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 150 = 0.01333 0.00365 # generation 25: best score out of 20: T0506.try1 205.59729 cost/residue, 259 clashes 0.17160 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 13 = 0.07692 0.00036 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 10 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 17 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 3 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 2 = 0.00000 0.00000 ## TweakPhiSubtree 0 19 4 / 26 = 0.15385 0.00234 ## TweakPhiSegment 5 18 11 / 31 = 0.35484 0.00421 ## TweakPsiSubtree 0 43 16 / 57 = 0.28070 0.00739 ## TweakPsiSegment 0 11 3 / 14 = 0.21429 0.00031 ## TweakPsiPhiSubtree 2 2 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 7 = 0.00000 0.00000 ## TweakHbondSubtree 0 39 8 / 65 = 0.12308 0.00837 ## TweakHbondSegment 0 28 12 / 72 = 0.16667 0.01814 ## TweakMultimer 13 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 10 = 0.10000 0.00011 ## FixOmega 0 2 0 / 8 = 0.00000 0.00000 ## Backrub 21 4 1 / 7 = 0.14286 0.00084 ## BigBackrub 2 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 36 8 / 86 = 0.09302 0.00750 ## ClashingRotamer 0 5 1 / 50 = 0.02000 0.00258 ## ClusteredRotamer 18 8 2 / 80 = 0.02500 0.00734 ## ReduceBreak 0 2 0 / 114 = 0.00000 0.00000 ## CloseGap 0 13 5 / 296 = 0.01689 0.04539 ## HealGap 0 10 2 / 136 = 0.01471 0.00136 ## MoveGap 0 5 0 / 125 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 118 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 492 = 0.00610 0.00094 ## InsertFragment 0 2 0 / 112 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 108 = 0.00000 0.00000 ## CrossOver 0 20 7 / 112 = 0.06250 0.00750 ## CrossAndInsert 2 1 0 / 109 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 155 = 0.01290 0.00353 # generation 26: best score out of 20: T0506.try1 205.49858 cost/residue, 259 clashes 0.17162 breaks # Cumulative usage by method: ## Method aborts kept better / tries = success_prob avg_improvement ## HealPeptide 0 6 1 / 13 = 0.07692 0.00036 ## JiggleSubtree 0 2 0 / 5 = 0.00000 0.00000 ## JiggleSegment 0 1 0 / 12 = 0.00000 0.00000 ## OptSubtree 0 0 0 / 18 = 0.00000 0.00000 ## OptSegment 0 0 0 / 18 = 0.00000 0.00000 ## OptAllSegments 0 0 0 / 4 = 0.00000 0.00000 ## ShiftSubtree 0 0 0 / 7 = 0.00000 0.00000 ## ShiftSegment 0 0 0 / 3 = 0.00000 0.00000 ## TweakPhiSubtree 0 20 4 / 28 = 0.14286 0.00218 ## TweakPhiSegment 5 19 12 / 34 = 0.35294 0.00427 ## TweakPsiSubtree 0 47 18 / 64 = 0.28125 0.00725 ## TweakPsiSegment 0 11 3 / 15 = 0.20000 0.00029 ## TweakPsiPhiSubtree 2 2 0 / 6 = 0.00000 0.00000 ## TweakPsiPhiSegment 2 5 0 / 7 = 0.00000 0.00000 ## TweakHbondSubtree 0 41 8 / 68 = 0.11765 0.00800 ## TweakHbondSegment 0 30 13 / 81 = 0.16049 0.01629 ## TweakMultimer 14 0 0 / 0 = 0.00000 0.00000 ## TweakPeptide 0 6 1 / 10 = 0.10000 0.00011 ## FixOmega 0 2 0 / 8 = 0.00000 0.00000 ## Backrub 21 4 1 / 7 = 0.14286 0.00084 ## BigBackrub 4 0 0 / 1 = 0.00000 0.00000 ## OneRotamer 0 38 10 / 90 = 0.11111 0.00878 ## ClashingRotamer 0 5 1 / 53 = 0.01887 0.00244 ## ClusteredRotamer 18 8 2 / 81 = 0.02469 0.00725 ## ReduceBreak 0 2 0 / 118 = 0.00000 0.00000 ## CloseGap 0 15 5 / 306 = 0.01634 0.04390 ## HealGap 0 10 2 / 139 = 0.01439 0.00133 ## MoveGap 0 5 0 / 130 = 0.00000 0.00000 ## ReduceConstraint 0 1 0 / 122 = 0.00000 0.00000 ## ImproveSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertSSBond 0 0 0 / 0 = 0.00000 0.00000 ## InsertAlignment 0 0 0 / 28 = 0.00000 0.00000 ## InsertSpecificFragment 0 12 3 / 503 = 0.00596 0.00092 ## InsertFragment 0 2 0 / 114 = 0.00000 0.00000 ## TwoFragment 0 0 0 / 114 = 0.00000 0.00000 ## CrossOver 0 20 7 / 119 = 0.05882 0.00706 ## CrossAndInsert 2 1 0 / 113 = 0.00000 0.00000 ## ReduceClash 0 4 2 / 161 = 0.01242 0.00340 undertaker: Spot.cc:172: XYZpoint Spot::get_spot(const ChainsResiduesAndAtoms*, int, const Pointlist&, const Conformation*, bool, const Spot*) const: Assertion `return_point.mag2() < 1.e12' failed.