# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2arzA 247 1.01e-32 b.45.1.1 127225 1xhnA 184 3.04e-23 b.45.1.1 122007 1vl7A 157 3.28e-12 b.45.1.1 108732 1rfeA 162 9.56e-09 b.45.1.1 111796 2aq6A 147 1.98e-07 b.45.1.1 127156 1w9aA 147 2.17e-07 b.45.1.1 114408 2hq9A 149 9.58e-05 b.45.1.1 136659 2fhqA 141 1.47e-04 b.45.1.1 133497 1t9mA 214 2.91e-04 b.45.1.1 112364 1w3oA 216 1.74e-03 b.45.1.1 114142 2ig6A 150 1.94e-03 1g79A 218 2.12e-03 1ci0A b.45.1.1 25752 1ty9A 222 2.29e-03 b.45.1.1 112827 1nrgA 261 2.35e-03 b.45.1.1 80694 1dnlA 199 2.72e-03 1ci0A b.45.1.1 25753 2hq7A 146 8.74e-03 b.45.1.1 136657 2htiA 185 1.24e-02 b.45.1.1 136744 2hhzA 150 1.34e-02 2iabA 155 1.36e-02 2fg9A 178 1.48e-02 b.45.1.1 133426 2htdA 140 1.02e-01 2i02A 148 2.14e-01 b.45.1.1 136936 1j1nA 492 2.18e-01 c.94.1.1 83978 2ou5A 175 2.78e-01 3cjnA 162 3.88e-01 2re7A 134 4.06e-01 2a2jA 246 4.11e-01 b.45.1.1 126033 1wueA 386 6.72e-01 c.1.11.2,d.54.1.1 114892,114893 1y3nA 490 7.45e-01 c.94.1.1 122597 2asfA 137 8.12e-01 b.45.1.1 127253 1nar 290 1.90e+00 1nar 1narA 290 1.90e+00 c.1.8.5 28988 2vd8A 391 1.92e+00 2furA 209 2.40e+00 b.45.1.1 134185 1ci0A 228 2.67e+00 1ci0A b.45.1.1 25750 1axj 122 2.74e+00 1axj 1zavA 180 3.06e+00 1h4rA 314 3.45e+00 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2b0vA 153 4.05e+00 d.113.1.1 127650 2ptfA 233 4.54e+00 2r79A 283 4.57e+00 1xg7A 250 4.91e+00 a.96.1.6 115281 3bs4A 260 5.60e+00 3cp3A 148 5.67e+00 1ko3A 230 5.82e+00 d.157.1.1 90974 2fb1A 226 6.16e+00 a.4.5.68,d.113.1.6 133225,133226 1gybA 125 6.30e+00 d.17.4.2 70744 1xvwA 160 6.91e+00 c.47.1.10 122387 2ou6A 190 7.15e+00 1d2zB 153 7.20e+00 1d2zB a.77.1.2 18439 2vc7A 314 7.21e+00 1taq 832 7.38e+00 1taq 1rwzA 245 7.40e+00 d.131.1.2,d.131.1.2 98005,98006 1flmA 122 8.76e+00 1axj b.45.1.1 25747 2asuB 234 9.02e+00 2nrrA 159 1.04e+01 1uocA 289 1.06e+01 c.55.3.9 99686 1gy7A 125 1.09e+01 d.17.4.2 70738 1rxzA 245 1.18e+01 d.131.1.2,d.131.1.2 98067,98068 1a8y 367 1.21e+01 1a8y 1a8yA 367 1.21e+01 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1ybhA 590 1.25e+01 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2a2fX 325 1.27e+01 3c4aA 381 1.29e+01 451cA 82 1.29e+01 a.3.1.1 15904 2ywrA 216 1.32e+01 1z9hA 290 1.38e+01 a.45.1.1,c.47.1.5 124758,124759 2elcA 329 1.47e+01 2j0eA 266 1.48e+01 2nn6B 249 1.51e+01 1ef1A 294 1.54e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1xwl 580 1.65e+01 1xwl 1xwtA 405 1.67e+01 a.102.1.2 122410 1epuA 591 1.69e+01 1dn1A e.25.1.1 43358 1gt7A 274 1.75e+01 c.74.1.1 70398 1nk4A 580 1.77e+01 c.55.3.5,e.8.1.1 91923,91924 2ef5A 290 1.82e+01 1i9yA 347 1.95e+01 1i9yA d.151.1.2 62101 3b5mA 205 1.99e+01 1iurA 88 2.01e+01 a.2.3.1 90704 2v9lA 274 2.07e+01 1oe1A 336 2.12e+01 b.6.1.3,b.6.1.3 86891,86892 1k32A 1045 2.13e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3bjoA 103 2.14e+01 1xw2A 405 2.15e+01 a.102.1.2 122389 1u7bA 261 2.17e+01 d.131.1.2,d.131.1.2 113083,113084 2hkjA 469 2.21e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1izoA 417 2.29e+01 a.104.1.1 83851 1m40A 263 2.31e+01 e.3.1.1 74437 2gekA 406 2.32e+01 2bbrA 195 2.36e+01 2inpL 89 2.36e+01 3czqA 304 2.39e+01 1h12A 405 2.51e+01 a.102.1.2 83447 1i9zA 347 2.60e+01 1i9yA d.151.1.2 62102 2bdpA 580 2.64e+01 1xwl c.55.3.5,e.8.1.1 33709,43002 1b43A 340 2.64e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 2d2rA 245 2.68e+01 2nsqA 155 2.68e+01 1je0A 236 2.78e+01 c.56.2.1 66581 1bd0A 388 2.80e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1ojrA 274 2.80e+01 c.74.1.1 93147 2v95A 371 2.81e+01 1x89A 178 2.88e+01 b.60.1.1 121799 1u4bA 580 2.92e+01 c.55.3.5,e.8.1.1 107664,107665 1pvtA 238 2.94e+01 c.74.1.1 95189 1q8iA 783 2.97e+01 c.55.3.5,e.8.1.1 96208,96209 2ebuA 112 2.99e+01 1dpjA 329 3.00e+01 1smrA b.50.1.2 26828 1l3sA 580 3.01e+01 c.55.3.5,e.8.1.1 84521,84522 2ql8A 143 3.05e+01 1fqgA 263 3.10e+01 1btl e.3.1.1 42699 1ermA 263 3.12e+01 1btl e.3.1.1 42690 1u3dA 509 3.15e+01 a.99.1.1,c.28.1.1 107638,107639 2hhvA 580 3.15e+01 c.55.3.5,e.8.1.1 136514,136515 1xxqA 161 3.20e+01 1eb7A 323 3.24e+01 1eb7A a.3.1.5,a.3.1.5 59404,59405 2f1sA 186 3.33e+01 1p3wA 404 3.36e+01 c.67.1.3 87752 1h9jA 145 3.45e+01 1h9jA b.40.6.2,b.40.6.2 60829,60830 2qi2A 347 3.46e+01 1h9mA 145 3.65e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 2prdA 174 3.65e+01 b.40.5.1 25435 2hufA 393 3.68e+01 2vfkA 205 3.70e+01 1mzyA 333 3.72e+01 b.6.1.3,b.6.1.3 103848,103849 3ceuA 210 3.75e+01 2nytA 190 3.84e+01 2cevA 299 3.87e+01 1d3vA c.42.1.1 32576 1x0vA 354 4.01e+01 2glfA 450 4.02e+01 1n46A 258 4.04e+01 a.123.1.1 85315 1jfuA 186 4.14e+01 c.47.1.10 62940 1mucA 373 4.14e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1g8aA 227 4.14e+01 c.66.1.3 90506 2ozbB 260 4.20e+01 1tkiA 321 4.21e+01 1tkiA d.144.1.7 41638 1g8lA 411 4.23e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2z00A 426 4.27e+01 1t3qA 168 4.30e+01 a.56.1.1,d.15.4.2 106367,106368 1nglA 179 4.32e+01 1nglA b.60.1.1 27146 2qziA 103 4.36e+01 2ew2A 316 4.38e+01 1btl 263 4.38e+01 1btl 3bwwA 307 4.41e+01 3ckcA 527 4.43e+01 2pzzA 147 4.46e+01 1e0tA 470 4.47e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2vl6A 268 4.49e+01 1prxA 224 4.51e+01 1prxA c.47.1.10 33076 1xsm 390 4.53e+01 1xsm 1fo1A 271 4.62e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1vjzA 341 4.62e+01 c.1.8.3 100838 2i8lA 156 4.66e+01 2aebA 322 4.78e+01 c.42.1.1 126617 1knqA 175 4.80e+01 c.37.1.17 72786 2hgsA 474 4.88e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1tueA 212 4.92e+01 c.37.1.20 107323 1w68A 390 4.97e+01 a.25.1.2 109216 1u9cA 224 5.01e+01 c.23.16.2 113234 2cz9A 350 5.03e+01 1qnrA 344 5.03e+01 1qnoA c.1.8.3 28834 1ew3A 159 5.09e+01 1mup b.60.1.1 27114 2e85A 159 5.10e+01 1mu5A 471 5.14e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1f3yA 165 5.19e+01 d.113.1.1 59635 3bomA 142 5.25e+01 2fcjA 119 5.33e+01 c.136.1.1 133269 2nnwA 376 5.48e+01 1noyA 388 5.50e+01 1clqA c.55.3.5 33713 2bg5A 324 5.53e+01 2nqrA 411 5.64e+01 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1qnoA 344 5.69e+01 1qnoA c.1.8.3 28838 3dbaA 180 5.73e+01 1xjcA 169 5.73e+01 c.37.1.10 115387 1jrmA 104 5.74e+01 d.206.1.1 67136 2jynA 146 5.86e+01 1ako 268 5.94e+01 1ako 1akoA 268 5.94e+01 d.151.1.1 41779 2z43A 324 5.95e+01 1l0oA 150 5.97e+01 d.122.1.3 73403 1rpa 342 6.00e+01 1cviA 2h1nA 567 6.00e+01 1jk0A 419 6.03e+01 a.25.1.2 63142 1n6eA 1071 6.05e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1gky 187 6.07e+01 1gky 1zdsA 336 6.07e+01 b.6.1.3,b.6.1.3 124952,124953 1x8dA 104 6.08e+01 1pq4A 291 6.09e+01 c.92.2.2 94995 8pchA 220 6.17e+01 1cs8A 1vluA 468 6.42e+01 c.82.1.1 108864 2jepA 395 6.42e+01 1uwsA 489 6.44e+01 c.1.8.4 108073 2bgsA 344 6.45e+01 2igbA 179 6.65e+01 3b9oA 440 6.67e+01 2fp8A 322 6.74e+01 2qorA 204 6.83e+01 1qg0A 308 6.90e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1qqsA 174 6.94e+01 1nglA b.60.1.1 27143 1a3wA 500 7.14e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 2rccA 346 7.22e+01 2p3yA 491 7.31e+01 2i6xA 211 7.60e+01 1m85A 484 7.67e+01 e.5.1.1 74578 3bgyA 237 7.76e+01 1eqnA 321 7.84e+01 1dd9A e.13.1.1 43256 1k7hA 476 7.84e+01 c.76.1.1 72101 1w3iA 293 7.95e+01 c.1.10.1 109152