# List of top-scoring protein chains for T0506.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2arzA 247 1.71e-32 b.45.1.1 127225 1g79A 218 3.50e-25 1ci0A b.45.1.1 25752 1dnlA 199 4.66e-24 1ci0A b.45.1.1 25753 1nrgA 261 1.10e-22 b.45.1.1 80694 1xhnA 184 4.98e-19 b.45.1.1 122007 1vl7A 157 1.12e-18 b.45.1.1 108732 2a2jA 246 1.53e-18 b.45.1.1 126033 1t9mA 214 2.88e-18 b.45.1.1 112364 1rfeA 162 3.50e-18 b.45.1.1 111796 1ci0A 228 2.80e-17 1ci0A b.45.1.1 25750 2fg9A 178 1.02e-16 b.45.1.1 133426 1ty9A 222 2.29e-16 b.45.1.1 112827 2htiA 185 2.17e-14 b.45.1.1 136744 2fhqA 141 2.22e-14 b.45.1.1 133497 2hq9A 149 2.19e-13 b.45.1.1 136659 2i02A 148 5.34e-13 b.45.1.1 136936 2aq6A 147 5.71e-12 b.45.1.1 127156 2asfA 137 1.00e-11 b.45.1.1 127253 1w3oA 216 6.11e-11 b.45.1.1 114142 2hhzA 150 2.14e-10 2ig6A 150 3.10e-10 2re7A 134 4.30e-10 2furA 209 9.02e-10 b.45.1.1 134185 2hq7A 146 8.74e-09 b.45.1.1 136657 2iabA 155 2.65e-08 2i51A 195 2.98e-08 2htdA 140 5.29e-07 2qeaA 160 6.19e-07 2ou5A 175 1.39e-05 2ol5A 202 2.25e-05 2e83A 122 4.97e-05 3cp3A 148 6.75e-05 1wllA 122 1.84e-04 b.45.1.1 121006 1wlkA 122 1.85e-04 b.45.1.1 121002 1wliA 122 1.85e-04 b.45.1.1 121000 1flmA 122 1.87e-04 1axj b.45.1.1 25747 3ba3A 145 7.88e-02 1ejeA 192 1.27e-01 1ejeA b.45.1.2 25757 2q9kA 151 2.08e-01 2ptfA 233 6.84e-01 2rcnA 358 6.92e-01 2aebA 322 1.06e+00 c.42.1.1 126617 1wvbA 322 1.11e+00 c.42.1.1 121329 1pvtA 238 2.97e+00 c.74.1.1 95189 2i7gA 376 3.23e+00 1g8pA 350 3.65e+00 1g8pA c.37.1.20 60376 3cjnA 162 4.10e+00 1prxA 224 4.16e+00 1prxA c.47.1.10 33076 1o07A 358 4.18e+00 e.3.1.1 92390 1dpiA 605 4.67e+00 c.55.3.5,e.8.1.1 33692,42985 2kfnA 605 4.69e+00 1xwl c.55.3.5,e.8.1.1 33682,42975 2igiA 180 4.72e+00 3czpA 500 5.69e+00 3b5mA 205 6.01e+00 1klnA 605 6.02e+00 1xwl c.55.3.5,e.8.1.1 33693,42986 2yz3A 266 7.14e+00 1ko3A 230 8.23e+00 d.157.1.1 90974 1ysjA 404 8.97e+00 c.56.5.4,d.58.19.1 123975,123976 1q2lA 939 1.00e+01 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1d8yA 605 1.01e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 1h41A 708 1.06e+01 c.1.8.10,d.92.2.2 83472,83473 1gqiA 708 1.09e+01 c.1.8.10,d.92.2.2 76279,76280 2pn1A 331 1.13e+01 1ul5A 88 1.15e+01 g.72.1.1 99539 1v7rA 186 1.15e+01 c.51.4.1 100482 1l0eA 358 1.20e+01 e.3.1.1 73396 1do5A 154 1.28e+01 1mfmA b.1.8.1 22303 1fsyA 358 1.32e+01 1gceA e.3.1.1 60016 2hdsA 358 1.33e+01 e.3.1.1 136350 1rrmA 386 1.34e+01 e.22.1.2 105081 2e5xA 186 1.36e+01 1ybvA 283 1.38e+01 1ybvA c.2.1.2 29948 1iwmA 186 1.40e+01 b.125.1.2 83758 2bl4A 392 1.41e+01 e.22.1.2 128726 2o0yA 260 1.45e+01 1hhnA 101 1.48e+01 1hhnA b.104.1.1 61043 1g0oA 283 1.49e+01 1ybvA c.2.1.2 60181 1l0gA 358 1.51e+01 e.3.1.1 73400 2ffyA 358 1.59e+01 e.3.1.1 133394 1l0dA 358 1.60e+01 e.3.1.1 73394 1t4bA 367 1.63e+01 c.2.1.3,d.81.1.1 106406,106407 1brmA 367 1.65e+01 1brmA c.2.1.3,d.81.1.1 30030,39945 1i7qA 519 1.67e+01 1qdlA d.161.1.1 61901 2nsgA 261 1.67e+01 1gwzA 299 1.77e+01 c.45.1.2 32685 1gaxA 862 1.83e+01 1gaxA b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1vrdA 494 1.87e+01 2pa6A 427 2.04e+01 2imzA 168 2.09e+01 1yfsA 465 2.15e+01 a.203.1.1,d.104.1.1 123088,123089 1lkiA 180 2.18e+01 a.26.1.1 16829 1culA 217 2.19e+01 1azsA d.58.29.1 39417 1xpnA 170 2.33e+01 b.3.7.1 115767 1cs4A 225 2.35e+01 1azsA d.58.29.1 39418 1azsA 220 2.37e+01 1azsA d.58.29.1 39416 2dukA 138 2.37e+01 1nd4A 264 2.40e+01 d.144.1.6 91815 1jdpA 441 2.41e+01 c.93.1.1 62906 2c1xA 456 2.53e+01 2qkbA 154 2.55e+01 2nsfA 261 2.63e+01 1yk1A 479 2.64e+01 1yk0A 480 2.67e+01 2qckA 167 2.67e+01 1t5yA 190 2.93e+01 b.122.1.1,d.17.6.3 106495,106496 2j289 430 2.98e+01 2dreA 180 3.10e+01 1sg3A 349 3.10e+01 b.18.1.22,b.18.1.22 98847,98848 1fo5A 85 3.11e+01 1fo5A c.47.1.1 59922 2jgvA 330 3.16e+01 2jg1A 330 3.21e+01 2bpoA 682 3.25e+01 2b3oA 532 3.29e+01 2pe2A 286 3.35e+01 d.144.1.7 139666 1h1wA 289 3.48e+01 d.144.1.7 83460 2bn4A 682 3.48e+01 2atpB 115 3.61e+01 1w6gA 646 3.73e+01 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1fprA 284 3.74e+01 2shpA c.45.1.2 59949 1uu9A 286 3.75e+01 d.144.1.7 100002 1iqyA 638 3.80e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 1sqwA 188 3.92e+01 b.122.1.1,d.17.6.3 119033,119034 1w4nA 646 3.93e+01 b.30.2.1,d.17.2.1,d.17.2.1 120627,120628,120629 1cf3A 583 3.96e+01 1gpeA c.3.1.2,d.16.1.1 30385,37949 1ui7A 638 4.02e+01 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 2e2tA 638 4.02e+01 3b8bA 292 4.02e+01 2yx9A 638 4.06e+01 1a7mA 180 4.22e+01 a.26.1.1 16830 1ui8A 638 4.29e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 3ca8A 266 4.31e+01 1uu3A 310 4.42e+01 d.144.1.7 99999 2biyA 310 4.43e+01 2o1xA 629 4.44e+01 1q5xA 161 4.57e+01 c.8.7.1 95947 1l0fA 358 4.64e+01 e.3.1.1 73398 3dfhA 394 4.69e+01 2cwtA 638 4.69e+01 b.30.2.1,d.17.2.1,d.17.2.1 130934,130935,130936 2d93A 134 4.71e+01 2zatA 260 4.73e+01 2q15A 385 4.73e+01 2q11A 388 4.79e+01 1o59A 355 4.84e+01 b.18.1.22,b.18.1.22 92495,92496 1mdbA 539 5.13e+01 e.23.1.1 79008 1sg9A 282 5.15e+01 c.66.1.30 105526 2d1wA 638 5.17e+01 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1jfuA 186 5.27e+01 c.47.1.10 62940 2greA 349 5.30e+01 b.49.3.1,c.56.5.4 135528,135529 2e2uA 628 5.31e+01 1nv8A 284 5.34e+01 c.66.1.30 86224 2v8tA 302 5.34e+01 2hrfA 173 5.37e+01 1gqpA 221 5.39e+01 b.18.1.9 70372 2yxnA 322 5.39e+01 2ebdA 309 5.48e+01 2pbeA 294 5.48e+01 1wq4A 321 5.54e+01 2in9A 139 5.54e+01 2aynA 404 5.56e+01 d.3.1.9 127563 2qz7A 194 5.63e+01 1q1rA 431 5.70e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2ch1A 396 5.71e+01 c.67.1.3 130439 2ph8A 405 5.75e+01 2cwlA 302 5.75e+01 a.25.1.3 130927 2napA 723 5.76e+01 2napA b.52.2.2,c.81.1.1 26926,35334 2nvlA 250 5.76e+01 3bljA 221 5.81e+01 1zemA 262 5.82e+01 c.2.1.2 124984 2zctA 249 5.82e+01 1xp4A 379 5.86e+01 b.105.1.1,e.3.1.1 115722,115723 1t5fA 314 5.94e+01 c.42.1.1 119154 1x6vA 630 5.95e+01 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1x8xA 322 6.11e+01 1z75A 358 6.14e+01 c.2.1.2 124587 2ozjA 114 6.16e+01 1jsdA 319 6.23e+01 b.19.1.2 63258 2cv4A 250 6.23e+01 c.47.1.10 130837 2cveA 191 6.31e+01 d.14.1.11,d.58.11.2 130869,130870 2fdpA 388 6.33e+01 b.50.1.2 133316 1cpbB 217 6.33e+01 2g94A 389 6.38e+01 b.50.1.2 134790 2r41A 110 6.38e+01 2qzlA 411 6.42e+01 1fknA 391 6.45e+01 1fknA b.50.1.2 26879 2eo8A 208 6.71e+01 2in0A 139 6.72e+01 2qqiA 318 6.72e+01 1zpeA 314 6.74e+01 c.42.1.1 125459 1xm0A 147 6.75e+01 b.88.1.3 122140 1i5qA 358 6.75e+01 1gceA e.3.1.1 61820 2zc0A 407 6.91e+01 2i0rA 361 6.93e+01 1vq1A 294 6.93e+01 c.66.1.30 120067 2i0sA 360 6.94e+01 2oizA 361 6.96e+01 2q7qA 361 6.97e+01 2hkrA 362 6.99e+01 1vbnA 318 7.06e+01 3cibA 390 7.08e+01 1ioiA 208 7.21e+01 1a2zA c.56.4.1 62629 1kskA 234 7.25e+01 d.66.1.5,d.265.1.3 72920,90389 2qp8A 395 7.26e+01 2j5vA 367 7.27e+01 1ye8A 178 7.33e+01 c.37.1.11 123010 1iofA 208 7.34e+01 1a2zA c.56.4.1 62625 1z8wA 208 7.36e+01 2oinA 200 7.41e+01 1zbdB 134 7.54e+01 1zbdB g.50.1.1 45359 1x12A 208 7.62e+01 2fmdA 240 7.65e+01 2o8mA 200 7.68e+01 1z8xA 208 7.85e+01 2ot2A 90 7.85e+01 2p59A 181 7.89e+01 3bs4A 260 7.90e+01 1ovlA 271 7.91e+01 a.123.1.1 87455 1wk2A 121 7.93e+01 b.122.1.5 114720 2df5A 213 7.93e+01 1n1lA 198 7.93e+01 b.47.1.3 91544 1rtlA 200 7.94e+01 b.47.1.3 111934 2oc0A 200 7.96e+01 2in8A 139 7.96e+01 2gvfA 199 7.98e+01 2f9vA 201 7.98e+01