# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2arzA 247 1.81e-33 b.45.1.1 127225 1g79A 218 9.43e-24 1ci0A b.45.1.1 25752 1dnlA 199 2.13e-23 1ci0A b.45.1.1 25753 1nrgA 261 4.57e-22 b.45.1.1 80694 1xhnA 184 1.21e-20 b.45.1.1 122007 1t9mA 214 6.70e-18 b.45.1.1 112364 2a2jA 246 7.01e-18 b.45.1.1 126033 1vl7A 157 3.14e-17 b.45.1.1 108732 1rfeA 162 5.82e-17 b.45.1.1 111796 1ci0A 228 1.13e-16 1ci0A b.45.1.1 25750 2fg9A 178 2.76e-16 b.45.1.1 133426 1ty9A 222 2.99e-16 b.45.1.1 112827 2fhqA 141 1.15e-13 b.45.1.1 133497 2hq9A 149 3.29e-13 b.45.1.1 136659 2htiA 185 4.01e-13 b.45.1.1 136744 2i02A 148 4.99e-13 b.45.1.1 136936 1w3oA 216 6.88e-12 b.45.1.1 114142 2aq6A 147 7.94e-12 b.45.1.1 127156 1w9aA 147 2.09e-11 b.45.1.1 114408 2ig6A 150 3.37e-11 2asfA 137 7.60e-11 b.45.1.1 127253 2iabA 155 2.37e-10 2hq7A 146 6.85e-10 b.45.1.1 136657 2i51A 195 1.04e-09 2re7A 134 1.53e-09 2furA 209 2.60e-09 b.45.1.1 134185 2hhzA 150 4.97e-09 2qeaA 160 1.04e-08 2htdA 140 8.42e-07 2ou5A 175 5.81e-06 2ol5A 202 9.67e-06 3cp3A 148 2.30e-04 1flmA 122 5.24e-04 1axj b.45.1.1 25747 1ejeA 192 5.89e-03 1ejeA b.45.1.2 25757 2kfnA 605 1.04e-02 1xwl c.55.3.5,e.8.1.1 33682,42975 3ba3A 145 2.36e-02 2ptfA 233 2.44e-02 3b5mA 205 6.55e-02 2q9kA 151 7.49e-02 1ko3A 230 1.14e-01 d.157.1.1 90974 1g8yA 279 3.64e-01 1g8yA c.37.1.11 32302 1nlfA 279 4.50e-01 c.37.1.11 85850 3bljA 221 4.80e-01 3bs4A 260 5.41e-01 1t5yA 190 6.81e-01 b.122.1.1,d.17.6.3 106495,106496 1ybhA 590 9.72e-01 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1sqwA 188 1.15e+00 b.122.1.1,d.17.6.3 119033,119034 2gj8A 172 1.30e+00 c.37.1.8 135270 1vpqA 273 1.31e+00 c.1.32.1 113974 3b8bA 292 1.44e+00 1pq4A 291 1.45e+00 c.92.2.2 94995 2igiA 180 1.60e+00 1khbA 625 1.73e+00 c.91.1.1,c.109.1.1 68606,68607 3bpkA 206 1.79e+00 1ornA 226 1.82e+00 a.96.1.1 87342 2yzyA 200 1.83e+00 2jhnA 295 1.91e+00 2etvA 346 2.06e+00 c.92.2.4 132372 2nr4A 213 2.15e+00 1h1wA 289 2.26e+00 d.144.1.7 83460 1ytaA 180 2.52e+00 c.55.3.5 124002 1iqyA 638 2.69e+00 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 2qf2A 624 2.81e+00 1w6gA 646 3.22e+00 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1rjoA 646 3.68e+00 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2d1wA 638 4.13e+00 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2zatA 260 4.16e+00 2nn6B 249 4.20e+00 1o89A 345 4.92e+00 b.35.1.2,c.2.1.1 92644,92645 1ui7A 638 5.14e+00 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1ui8A 638 5.38e+00 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 2f46A 156 5.49e+00 3bnwA 181 5.77e+00 1q5xA 161 5.93e+00 c.8.7.1 95947 1ujqA 305 6.26e+00 c.1.12.7 99463 2yxnA 322 6.75e+00 1c4oA 664 6.86e+00 1d2mA c.37.1.19,c.37.1.19 32415,32416 1xb2B 291 7.48e+00 a.5.2.2,d.43.1.1,d.43.1.1 115057,115058,115059 3czqA 304 7.56e+00 1w1iE 357 7.86e+00 c.1.9.1 109051 1mdoA 393 8.20e+00 c.67.1.4 79013 1wq3A 322 8.29e+00 1u3dA 509 9.23e+00 a.99.1.1,c.28.1.1 107638,107639 1zsoA 164 9.51e+00 b.166.1.1 125610 1vflA 356 9.81e+00 c.1.9.1 120041 3vub 101 1.04e+01 3vub 3vubA 101 1.04e+01 b.34.6.1 24613 1ct9A 553 1.07e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1u6eA 335 1.07e+01 c.95.1.2,c.95.1.2 119568,119569 1fkx 349 1.14e+01 1a4mA 3c0fB 91 1.14e+01 1ryaA 160 1.22e+01 d.113.1.5 105122 1i8dA 213 1.22e+01 b.43.4.3,b.43.4.3 61953,61954 1lbvA 252 1.27e+01 e.7.1.1 73813 1qqhA 144 1.30e+01 1dtoA b.91.1.1 28404 1hzpA 335 1.36e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 1a4mA 349 1.37e+01 1a4mA c.1.9.1 29014 3pvaA 335 1.42e+01 3pvaA d.153.1.3 41854 2bvfA 459 1.44e+01 2d93A 134 1.45e+01 3c1mA 473 1.45e+01 2d5mA 190 1.48e+01 1m40A 263 1.50e+01 e.3.1.1 74437 2ggtA 164 1.52e+01 c.47.1.10 135156 2ywrA 216 1.53e+01 2i8tA 167 1.53e+01 1ur1A 378 1.58e+01 c.1.8.3 99804 2bdqA 224 1.63e+01 1kvkA 395 1.68e+01 d.14.1.5,d.58.26.3 73060,73061 1ki9A 192 1.74e+01 c.37.1.1 84404 1yrbA 262 1.76e+01 c.37.1.10 123915 2yx0A 342 1.77e+01 1ermA 263 1.78e+01 1btl e.3.1.1 42690 2b61A 377 1.86e+01 2it1A 362 1.92e+01 2oyrA 258 2.01e+01 1uocA 289 2.04e+01 c.55.3.9 99686 1g0cA 364 2.06e+01 7a3hA c.1.8.3 60165 1qyiA 384 2.07e+01 c.108.1.13 96595 1rrvA 416 2.08e+01 c.87.1.5 105083 1wr8A 231 2.08e+01 c.108.1.10 114836 2nytA 190 2.16e+01 2ebuA 112 2.17e+01 2pvaA 345 2.28e+01 3pvaA d.153.1.3 41850 1a7j 290 2.29e+01 1a7j 1a7jA 290 2.29e+01 c.37.1.6 31952 1azsA 220 2.29e+01 1azsA d.58.29.1 39416 2himA 358 2.29e+01 2oklA 185 2.32e+01 1lqyA 184 2.34e+01 d.167.1.1 74212 1uu3A 310 2.36e+01 d.144.1.7 99999 2graA 277 2.38e+01 1z47A 355 2.42e+01 1g0oA 283 2.44e+01 1ybvA c.2.1.2 60181 1oxsC 353 2.49e+01 b.40.6.3,c.37.1.12 87519,87520 3boeA 210 2.56e+01 2obnA 349 2.56e+01 2vsoE 289 2.61e+01 1vcdA 126 2.62e+01 d.113.1.1 119970 1r3eA 309 2.66e+01 b.122.1.1,d.265.1.2 96907,96908 2v9lA 274 2.67e+01 1oa4A 222 2.73e+01 b.29.1.11 86731 1oxxK 353 2.88e+01 b.40.6.3,c.37.1.12 93715,93716 1s4vA 229 2.90e+01 d.3.1.1 98511 1btl 263 2.93e+01 1btl 2izzA 322 2.95e+01 1mkmA 249 2.96e+01 a.4.5.33,d.110.2.2 79242,79243 2jc4A 256 2.97e+01 2r47A 157 3.00e+01 1chmA 401 3.06e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2d0eA 407 3.28e+01 1xhlA 297 3.32e+01 c.2.1.2 109591 1mw7A 240 3.32e+01 e.39.1.1 79557 1e6wA 260 3.33e+01 1e6wA c.2.1.2 59326 1td5A 202 3.33e+01 d.110.2.2 106767 3cnhA 200 3.33e+01 2bbsA 290 3.37e+01 1mf7A 194 3.37e+01 c.62.1.1 84937 1ojrA 274 3.48e+01 c.74.1.1 93147 1fgkA 310 3.48e+01 1fgkA d.144.1.7 41693 2fb1A 226 3.58e+01 a.4.5.68,d.113.1.6 133225,133226 2ozjA 114 3.58e+01 2p0nA 172 3.61e+01 1zbdB 134 3.64e+01 1zbdB g.50.1.1 45359 1jpzA 473 3.65e+01 a.104.1.1 67069 1i0rA 169 3.68e+01 1i0rA b.45.1.2 61489 1xezA 721 3.70e+01 1b43A 340 3.71e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1q7hA 153 3.76e+01 b.122.1.1,d.17.6.2 96042,96043 1kqqA 139 3.79e+01 a.4.3.1 72885 2c1xA 456 3.79e+01 1wv2A 265 3.83e+01 c.1.31.1 114910 1cjwA 166 3.94e+01 1cjwA d.108.1.1 40818 1zymA 258 3.95e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1ax4A 467 3.97e+01 1ax4A c.67.1.2 34391 1p2hA 571 3.98e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2ffiA 288 4.02e+01 c.1.9.15 133385 2f3lA 184 4.05e+01 b.80.8.1 132872 1y0pA 571 4.10e+01 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2aa1A 144 4.22e+01 a.1.1.2 126463 2qckA 167 4.23e+01 2eayA 233 4.23e+01 1iweA 457 4.25e+01 c.37.1.10 71486 2o99A 182 4.25e+01 d.110.2.2 138952 1bn7A 294 4.27e+01 1bn6A c.69.1.8 34677 2i7pA 362 4.28e+01 1v9sA 208 4.30e+01 c.61.1.1 119894 2h0bA 184 4.30e+01 1cc1L 498 4.31e+01 1h2rL e.18.1.1 43301 2pvfA 334 4.40e+01 1js8A 394 4.40e+01 a.86.1.1,b.112.1.1 67219,67220 1dp4A 435 4.42e+01 1dp4A c.93.1.1 35710 2dr1A 386 4.42e+01 1q7bA 244 4.43e+01 c.2.1.2 96026 1eu1A 780 4.45e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1l0cA 207 4.46e+01 d.108.1.1 73393 1r3dA 264 4.46e+01 c.69.1.35 111680 1iy8A 267 4.47e+01 c.2.1.2 83774 2vlaA 285 4.48e+01 2hy7A 406 4.49e+01 1q9iA 571 4.54e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1q6hA 224 4.55e+01 d.26.1.1 95975 2q5iA 691 4.56e+01 1qyaA 307 4.63e+01 d.21.1.2,d.21.1.2 104653,104654 1spxA 278 4.70e+01 c.2.1.2 98958 2gekA 406 4.70e+01 1vz6A 393 4.71e+01 d.154.1.2 108949 1gt6A 269 4.74e+01 c.69.1.17 76342 1w8oA 601 4.75e+01 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2fvvA 194 4.81e+01 d.113.1.1 134226 2qmmA 197 4.83e+01 1okiA 210 4.86e+01 b.11.1.1,b.11.1.1 93255,93256 1oi2A 366 4.91e+01 c.119.1.2 103802 1sdjA 310 4.98e+01 d.21.1.2,d.21.1.2 98807,98808 1wcqA 601 4.98e+01 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 2cb2A 318 5.02e+01 d.58.4.17 130174 2h3hA 313 5.03e+01 2d13A 227 5.04e+01 c.26.2.1 131121 2qqiA 318 5.06e+01 2f57A 317 5.14e+01 1ualA 274 5.14e+01 c.116.1.4 88383 1o0pA 104 5.18e+01 d.58.7.1 86535 1nwaA 203 5.22e+01 d.58.28.1 86295 2c1lA 358 5.24e+01 2q01A 497 5.29e+01 2glfA 450 5.32e+01 2hufA 393 5.32e+01 2h8fA 143 5.35e+01 a.1.1.2 136239 1w6sA 599 5.38e+01 b.70.1.1 114284 1jkxA 212 5.40e+01 c.65.1.1 66813 1p9qC 256 5.55e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1bf6A 291 5.55e+01 1pscA c.1.9.3 29065 3cjnA 162 5.64e+01 1mxsA 225 5.81e+01 c.1.10.1 91494 1sgvA 316 5.81e+01 b.122.1.1,d.265.1.2 98858,98859 1jfuA 186 5.88e+01 c.47.1.10 62940 2ovrB 445 5.89e+01 1urvA 190 5.96e+01 a.1.1.2 113414 2fukA 220 6.02e+01 1tikA 213 6.04e+01 c.23.5.3 107003 1zelA 298 6.07e+01 1gybA 125 6.07e+01 d.17.4.2 70744 1lvwA 295 6.21e+01 c.68.1.6 84723 1wexA 104 6.29e+01 d.58.7.1 114568 2nuwA 288 6.30e+01 1n3lA 372 6.51e+01 c.26.1.1 79966 1bkjA 240 6.51e+01 1bkjA d.90.1.1 40243 2i5eA 211 6.53e+01 2cx4A 164 6.56e+01 c.47.1.10 130973 1xkqA 280 6.60e+01 c.2.1.2 115417 2f6kA 307 6.61e+01 c.1.9.15 133047 1ve1A 304 6.72e+01 c.79.1.1 120007 1e39A 571 6.73e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1efyA 350 6.77e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1kssA 571 6.79e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2ganA 190 6.81e+01 d.108.1.1 134889 3cvjA 243 6.83e+01 4enl 436 6.88e+01 4enl 1xtnA 120 6.91e+01 d.189.1.1 116028 1pvtA 238 6.97e+01 c.74.1.1 95189 2dtcA 126 7.02e+01 2orzA 314 7.02e+01 3bwxA 285 7.08e+01 2osxA 481 7.08e+01 2nlrA 234 7.14e+01 2nlrA b.29.1.11 24344 2g17A 337 7.18e+01 c.2.1.3,d.81.1.1 134512,134513 1kuxA 207 7.22e+01 d.108.1.1 73021 1rlr 761 7.22e+01 1rlr 1rlrA 761 7.22e+01 a.98.1.1,c.7.1.2 18753,30679 1ido 192 7.24e+01 1ido 1mba 147 7.26e+01 2fal 1eovA 487 7.27e+01 1b8aA b.40.4.1,d.104.1.1 25239,40760 1hqsA 423 7.27e+01 1iso c.77.1.1 61154 1go3E 187 7.35e+01 b.40.4.5,d.230.1.1 83054,83055 1mbaA 146 7.42e+01 a.1.1.2 15149 1mo7A 213 7.44e+01 d.220.1.1 85028 2ch4W 151 7.46e+01 b.40.7.1 130451 1g5tA 196 7.46e+01 1g5rA c.37.1.11 32366 2in0A 139 7.48e+01 1nktA 922 7.48e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1x54A 434 7.54e+01 2dm6A 333 7.62e+01 b.35.1.2,c.2.1.1 131567,131568 1wlzA 105 7.64e+01 a.39.1.7 121024 1f8eA 388 7.64e+01 2qwc b.68.1.1 59694 2qvcA 313 7.66e+01 3ddyA 186 7.72e+01 2zejA 184 7.78e+01 1gy7A 125 7.80e+01 d.17.4.2 70738 2vhlA 396 7.85e+01 2yueA 168 7.87e+01