# TARGET T0503 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0503.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2115 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.010 0.007 0.006 0.111 0.087 0.780 2 H 0.016 0.008 0.007 0.562 0.046 0.362 3 T 0.009 0.005 0.013 0.802 0.056 0.116 4 A 0.007 0.003 0.033 0.843 0.073 0.042 5 L 0.008 0.002 0.066 0.844 0.058 0.023 6 I 0.010 0.002 0.090 0.826 0.053 0.020 7 N 0.005 0.001 0.049 0.869 0.043 0.032 8 H 0.006 0.002 0.053 0.777 0.067 0.095 9 I 0.013 0.012 0.060 0.681 0.130 0.104 10 R 0.025 0.006 0.109 0.561 0.168 0.131 11 K 0.026 0.004 0.199 0.529 0.121 0.121 12 F 0.049 0.014 0.332 0.330 0.201 0.074 13 I 0.063 0.011 0.264 0.243 0.268 0.151 14 F 0.050 0.016 0.065 0.057 0.397 0.415 15 L 0.059 0.051 0.004 0.019 0.280 0.586 16 T 0.021 0.010 0.001 0.014 0.069 0.884 17 D 0.001 0.001 0.038 0.944 0.011 0.006 18 E 0.001 0.001 0.066 0.920 0.011 0.002 19 D 0.001 0.001 0.061 0.925 0.010 0.003 20 A 0.002 0.001 0.009 0.975 0.006 0.006 21 G 0.002 0.001 0.008 0.980 0.006 0.004 22 T 0.002 0.001 0.011 0.969 0.011 0.006 23 L 0.002 0.001 0.012 0.956 0.017 0.012 24 S 0.004 0.001 0.027 0.921 0.029 0.018 25 A 0.006 0.001 0.038 0.872 0.049 0.033 26 F 0.017 0.001 0.023 0.768 0.076 0.115 27 F 0.145 0.004 0.020 0.468 0.141 0.222 28 Q 0.451 0.003 0.011 0.358 0.069 0.107 29 L 0.615 0.002 0.009 0.304 0.030 0.040 30 K 0.700 0.003 0.005 0.231 0.019 0.043 31 K 0.816 0.004 0.003 0.080 0.024 0.072 32 V 0.564 0.028 0.004 0.031 0.087 0.287 33 R 0.250 0.013 0.008 0.012 0.641 0.077 34 K 0.065 0.003 0.022 0.016 0.848 0.046 35 K 0.040 0.002 0.018 0.013 0.874 0.054 36 E 0.417 0.013 0.008 0.008 0.478 0.077 37 T 0.769 0.007 0.002 0.011 0.053 0.158 38 L 0.915 0.005 0.002 0.013 0.021 0.044 39 L 0.932 0.007 0.002 0.014 0.016 0.030 40 K 0.873 0.005 0.002 0.015 0.075 0.030 41 T 0.435 0.004 0.005 0.033 0.401 0.122 42 G 0.154 0.007 0.010 0.015 0.657 0.157 43 E 0.322 0.029 0.019 0.017 0.446 0.168 44 I 0.378 0.046 0.050 0.025 0.257 0.244 45 C 0.294 0.014 0.038 0.007 0.410 0.236 46 R 0.249 0.003 0.052 0.008 0.364 0.324 47 I 0.779 0.004 0.007 0.004 0.086 0.120 48 N 0.967 0.001 0.001 0.001 0.014 0.016 49 Y 0.993 0.001 0.001 0.001 0.002 0.003 50 F 0.996 0.001 0.001 0.001 0.001 0.002 51 V 0.990 0.001 0.001 0.001 0.003 0.006 52 V 0.960 0.001 0.001 0.001 0.018 0.021 53 K 0.774 0.001 0.001 0.001 0.104 0.118 54 G 0.637 0.002 0.004 0.001 0.204 0.151 55 C 0.893 0.003 0.001 0.001 0.046 0.056 56 L 0.976 0.001 0.001 0.001 0.007 0.016 57 R 0.989 0.001 0.001 0.001 0.003 0.007 58 L 0.993 0.001 0.001 0.001 0.002 0.005 59 F 0.989 0.001 0.001 0.001 0.002 0.008 60 F 0.984 0.001 0.001 0.001 0.004 0.012 61 I 0.923 0.008 0.001 0.001 0.010 0.058 62 D 0.418 0.010 0.002 0.001 0.556 0.014 63 E 0.020 0.001 0.018 0.002 0.952 0.008 64 K 0.003 0.001 0.029 0.004 0.959 0.005 65 G 0.062 0.011 0.020 0.003 0.894 0.010 66 I 0.463 0.014 0.002 0.007 0.092 0.421 67 E 0.937 0.010 0.001 0.004 0.012 0.037 68 Q 0.967 0.001 0.001 0.005 0.009 0.017 69 T 0.980 0.001 0.001 0.005 0.004 0.009 70 T 0.970 0.001 0.002 0.010 0.008 0.010 71 Q 0.922 0.001 0.003 0.038 0.013 0.023 72 F 0.913 0.002 0.004 0.028 0.017 0.036 73 A 0.710 0.021 0.004 0.031 0.050 0.184 74 I 0.367 0.022 0.011 0.054 0.478 0.068 75 E 0.069 0.004 0.010 0.090 0.766 0.060 76 N 0.023 0.004 0.019 0.105 0.794 0.055 77 W 0.183 0.059 0.015 0.107 0.589 0.047 78 W 0.298 0.050 0.019 0.283 0.133 0.218 79 L 0.316 0.029 0.033 0.396 0.121 0.106 80 S 0.270 0.007 0.074 0.307 0.176 0.165 81 D 0.154 0.008 0.098 0.514 0.108 0.119 82 Y 0.128 0.007 0.156 0.530 0.094 0.084 83 M 0.045 0.004 0.124 0.694 0.077 0.056 84 A 0.026 0.002 0.116 0.768 0.055 0.032 85 F 0.022 0.007 0.069 0.772 0.079 0.052 86 Q 0.012 0.005 0.041 0.759 0.136 0.047 87 K 0.008 0.003 0.029 0.572 0.229 0.157 88 Q 0.008 0.005 0.020 0.211 0.332 0.425 89 Q 0.012 0.008 0.007 0.018 0.360 0.595 90 P 0.024 0.009 0.013 0.008 0.316 0.630 91 A 0.093 0.020 0.031 0.015 0.373 0.468 92 D 0.280 0.011 0.031 0.014 0.286 0.378 93 F 0.652 0.008 0.024 0.016 0.133 0.168 94 Y 0.821 0.006 0.007 0.016 0.053 0.097 95 I 0.911 0.004 0.005 0.017 0.021 0.041 96 Q 0.936 0.002 0.003 0.011 0.014 0.033 97 S 0.919 0.004 0.003 0.006 0.018 0.050 98 V 0.849 0.007 0.004 0.005 0.119 0.016 99 E 0.711 0.006 0.005 0.004 0.253 0.022 100 N 0.213 0.002 0.005 0.004 0.728 0.047 101 C 0.590 0.004 0.003 0.001 0.364 0.038 102 E 0.923 0.004 0.001 0.001 0.025 0.047 103 L 0.981 0.002 0.001 0.002 0.005 0.008 104 L 0.985 0.001 0.001 0.003 0.004 0.007 105 S 0.975 0.001 0.001 0.002 0.005 0.017 106 I 0.765 0.006 0.001 0.006 0.027 0.196 107 T 0.166 0.004 0.001 0.010 0.064 0.754 108 Y 0.005 0.001 0.074 0.835 0.039 0.048 109 T 0.001 0.001 0.078 0.890 0.024 0.006 110 E 0.001 0.001 0.093 0.889 0.014 0.002 111 Q 0.001 0.001 0.020 0.970 0.006 0.003 112 E 0.001 0.001 0.010 0.982 0.005 0.002 113 N 0.001 0.001 0.008 0.983 0.005 0.003 114 L 0.001 0.001 0.016 0.963 0.012 0.008 115 F 0.001 0.001 0.039 0.913 0.032 0.015 116 E 0.001 0.001 0.030 0.900 0.042 0.026 117 R 0.001 0.001 0.008 0.872 0.036 0.082 118 I 0.001 0.001 0.003 0.269 0.105 0.621 119 P 0.001 0.001 0.024 0.949 0.017 0.010 120 A 0.001 0.001 0.041 0.939 0.015 0.004 121 L 0.001 0.001 0.019 0.978 0.003 0.001 122 E 0.001 0.001 0.003 0.995 0.001 0.001 123 R 0.001 0.001 0.001 0.998 0.001 0.001 124 Y 0.001 0.001 0.001 0.998 0.001 0.001 125 F 0.001 0.001 0.001 0.999 0.001 0.001 126 R 0.001 0.001 0.001 0.999 0.001 0.001 127 L 0.001 0.001 0.001 0.999 0.001 0.001 128 V 0.001 0.001 0.001 0.999 0.001 0.001 129 Y 0.001 0.001 0.001 0.999 0.001 0.001 130 Q 0.001 0.001 0.001 0.998 0.001 0.001 131 K 0.001 0.001 0.001 0.999 0.001 0.001 132 S 0.001 0.001 0.001 0.999 0.001 0.001 133 F 0.001 0.001 0.001 0.999 0.001 0.001 134 A 0.001 0.001 0.001 0.999 0.001 0.001 135 A 0.001 0.001 0.001 0.999 0.001 0.001 136 A 0.001 0.001 0.001 0.999 0.001 0.001 137 Q 0.001 0.001 0.001 0.998 0.001 0.001 138 L 0.001 0.001 0.001 0.996 0.001 0.001 139 R 0.001 0.001 0.001 0.994 0.002 0.003 140 S 0.001 0.001 0.002 0.990 0.003 0.003 141 K 0.001 0.001 0.005 0.979 0.008 0.006 142 F 0.002 0.001 0.009 0.961 0.015 0.013 143 Q 0.005 0.002 0.021 0.904 0.036 0.032 144 H 0.006 0.002 0.019 0.799 0.072 0.101 145 M 0.013 0.009 0.017 0.397 0.139 0.426 146 Y 0.012 0.012 0.004 0.130 0.125 0.717 147 S 0.004 0.004 0.001 0.027 0.053 0.912 148 K 0.001 0.001 0.006 0.978 0.006 0.009 149 E 0.001 0.001 0.005 0.991 0.002 0.001 150 E 0.001 0.001 0.004 0.991 0.003 0.001 151 Q 0.001 0.001 0.002 0.996 0.001 0.001 152 Y 0.001 0.001 0.001 0.999 0.001 0.001 153 H 0.001 0.001 0.001 0.998 0.001 0.001 154 N 0.001 0.001 0.001 0.997 0.001 0.001 155 F 0.001 0.001 0.004 0.992 0.003 0.001 156 S 0.001 0.001 0.011 0.976 0.010 0.002 157 S 0.001 0.001 0.012 0.955 0.019 0.013 158 R 0.001 0.002 0.015 0.797 0.050 0.136 159 F 0.002 0.007 0.055 0.249 0.266 0.421 160 P 0.001 0.002 0.425 0.228 0.240 0.105 161 E 0.003 0.003 0.475 0.177 0.301 0.042 162 F 0.002 0.003 0.309 0.377 0.262 0.047 163 I 0.005 0.007 0.090 0.490 0.237 0.170 164 Q 0.004 0.005 0.028 0.283 0.253 0.426 165 R 0.006 0.005 0.007 0.050 0.178 0.753 166 V 0.012 0.024 0.003 0.061 0.142 0.758 167 P 0.009 0.015 0.002 0.091 0.048 0.835 168 Q 0.001 0.001 0.004 0.990 0.002 0.004 169 Y 0.001 0.001 0.002 0.997 0.001 0.001 170 L 0.001 0.001 0.001 0.997 0.001 0.001 171 L 0.001 0.001 0.001 0.997 0.001 0.001 172 A 0.001 0.001 0.002 0.994 0.003 0.001 173 S 0.001 0.001 0.006 0.982 0.008 0.004 174 Y 0.001 0.001 0.011 0.961 0.016 0.010 175 L 0.002 0.003 0.022 0.827 0.055 0.091 176 G 0.002 0.002 0.010 0.031 0.098 0.857 177 F 0.004 0.010 0.004 0.025 0.096 0.861 178 T 0.002 0.003 0.001 0.029 0.042 0.923 179 P 0.001 0.001 0.006 0.969 0.008 0.017 180 E 0.001 0.001 0.004 0.991 0.003 0.002 181 Y 0.001 0.001 0.002 0.995 0.001 0.001 182 L 0.001 0.001 0.001 0.998 0.001 0.001 183 S 0.001 0.001 0.001 0.998 0.001 0.001 184 E 0.001 0.001 0.001 0.997 0.001 0.001 185 I 0.001 0.001 0.002 0.995 0.003 0.001 186 R 0.001 0.001 0.002 0.994 0.003 0.001 187 K 0.001 0.001 0.007 0.983 0.007 0.003 188 K 0.001 0.001 0.010 0.893 0.031 0.065 189 Y 0.001 0.002 0.006 0.065 0.089 0.836 190 I 0.008 0.018 0.003 0.015 0.083 0.873 191 S 0.019 0.009 0.001 0.009 0.079 0.882