# List of top-scoring protein chains for T0503.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g6nA 210 3.14e-24 2cgpA a.4.5.4,b.82.3.2 16100,28139 1hw5A 210 3.26e-24 2cgpA a.4.5.4,b.82.3.2 16098,28137 1i5zA 209 3.34e-24 a.4.5.4,b.82.3.2 83669,83670 1cgpA 205 3.35e-24 a.4.5.4,b.82.3.2 16096,28135 1i6xA 209 7.53e-24 a.4.5.4,b.82.3.2 83673,83674 1o3tA 200 8.08e-24 a.4.5.4,b.82.3.2 86611,86612 1ruoA 209 1.10e-23 2cgpA a.4.5.4,b.82.3.2 16105,28144 1o3sA 200 2.13e-23 a.4.5.4,b.82.3.2 86609,86610 2oz6A 207 6.05e-23 2pqqA 149 3.05e-20 2gauA 232 8.29e-20 a.4.5.4,b.82.3.2 134894,134895 1o5lA 213 5.89e-19 b.82.3.2 92506 2fmyA 220 6.43e-17 2hkxA 221 9.60e-17 2z69A 154 1.14e-16 2zcwA 202 1.90e-15 1ft9A 222 4.48e-15 1ft9A a.4.5.4,b.82.3.1 16107,28131 2h6bA 250 2.53e-14 1vp6A 138 4.69e-14 b.82.3.2 113939 3behA 355 5.37e-14 1u12A 138 7.72e-14 b.82.3.2 112946 2h6cA 232 3.40e-13 1q3eA 207 4.62e-13 b.82.3.2 95669 3bpzA 202 6.61e-13 1zybA 232 6.71e-13 a.4.5.4,b.82.3.2 125815,125816 2qvsB 310 7.45e-13 2q0aA 200 8.10e-13 b.82.3.2 139781 1rl3A 288 9.53e-13 b.82.3.2,b.82.3.2 104975,104976 1ne6A 283 1.01e-12 b.82.3.2,b.82.3.2 91831,91832 2qcsB 291 1.94e-12 1cx4A 305 2.28e-12 b.82.3.2,b.82.3.2 59099,59100 1u7eB 154 5.38e-12 2ptmA 198 9.54e-11 1o7fA 469 9.21e-10 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2byvE 999 1.33e-09 1wgpA 137 3.28e-07 b.82.3.2 114619 2bgcA 238 3.23e-06 a.4.5.4,b.82.3.3 128458,128459 2beoA 236 5.14e-06 a.4.5.4,b.82.3.3 128381,128382 1omiA 248 5.37e-06 b.82.3.3,a.4.5.4 87079,87080 2d93A 134 1.19e-04 1lccA 51 2.30e-01 1pru a.35.1.5 17110 1lqcA 56 2.48e-01 a.35.1.5 17109 1cjgA 62 2.68e-01 1pru a.35.1.5 17112 1l1mA 62 2.69e-01 a.35.1.5 73474 1yhfA 115 4.76e-01 b.82.1.9 123176 3c0dA 119 6.03e-01 1mzvA 235 6.91e-01 c.61.1.1 91502 2bjcA 62 7.54e-01 a.35.1.5 128620 2dg7A 195 1.30e+00 1mgtA 174 1.48e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 2dbbA 151 2.30e+00 2phlA 397 2.38e+00 1dgwA b.82.1.2,b.82.1.2 28082,28083 1vj2A 126 2.42e+00 b.82.1.10 100796 2g7hA 167 2.51e+00 2h09A 155 2.98e+00 2qvpA 275 3.72e+00 2qjvA 270 4.27e+00 1qb7A 236 4.55e+00 1qb7A c.61.1.1 34087 1ttyA 87 4.76e+00 a.4.13.2 112638 1jyeA 349 6.26e+00 c.93.1.1 67455 2uybA 385 6.97e+00 1efaA 333 7.14e+00 1tlfA a.35.1.5,c.93.1.1 17106,35691 2fbhA 146 7.20e+00 a.4.5.28 133245 1jyfA 349 7.24e+00 c.93.1.1 67456 1lbiA 360 7.27e+00 1tlfA c.93.1.1 35694 1bw6A 56 7.68e+00 1bw6A a.4.1.7 16052 1e3pA 757 7.74e+00 1e3hA a.4.9.1,b.40.4.5,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16258,25328,37574,37575,38811,40697,40698 1tuwA 109 7.96e+00 d.58.4.8 107346 2uy8A 385 8.01e+00 1j58A 385 8.36e+00 b.82.1.2 71531 2d1hA 109 8.61e+00 a.4.5.50 131125 1ipjA 416 8.64e+00 b.82.1.2,b.82.1.2 71258,71259 2ao9A 155 8.64e+00 a.4.1.17 127069 1uijA 416 8.66e+00 b.82.1.2,b.82.1.2 107866,107867 2pe5A 330 8.73e+00 1ipkA 416 8.78e+00 b.82.1.2,b.82.1.2 71264,71265 2uy9A 385 9.42e+00 3ctaA 230 9.93e+00 2uyaA 383 1.05e+01 1u8bA 133 1.05e+01 1utxA 66 1.06e+01 a.35.1.3 108034 1zgwA 139 1.15e+01 2v09A 385 1.19e+01 1wj9A 211 1.22e+01 d.58.53.1,d.58.53.1 114694,114695 1ku3A 73 1.40e+01 a.4.13.2 73000 2o36A 674 1.49e+01 2vcgA 375 1.51e+01 1zz1A 369 1.51e+01 1s4bP 674 1.52e+01 d.92.1.5 105252 1wpkA 146 1.55e+01 3deuA 166 1.73e+01 1rioH 73 1.80e+01 a.4.13.2 97515 1qgpA 77 1.88e+01 1qbjA a.4.5.19 16158 1u7zA 226 1.90e+01 c.72.3.1 113107 2jn6A 97 2.01e+01 1dllA 441 2.05e+01 1a8d b.29.1.6,b.42.4.2 24263,25608 1diwA 441 2.07e+01 1a8d b.29.1.6,b.42.4.2 24264,25609 1dfqA 444 2.07e+01 1a8d b.29.1.6,b.42.4.2 24267,25612 1a8dA 452 2.19e+01 b.29.1.6,b.42.4.2 24262,25607 2bkkA 264 2.27e+01 2uu7A 381 2.28e+01 1d0hA 469 2.35e+01 1a8d b.29.1.6,b.42.4.2 24265,25610 2fug2 181 2.36e+01 1iq7A 345 2.36e+01 c.94.1.2 66261 1k7jA 206 2.43e+01 d.115.1.1 72103 2g7gA 213 2.44e+01 a.4.1.9,a.121.1.1 134732,134733 1fv3A 472 2.46e+01 b.29.1.6,b.42.4.2 60038,60039 2d3iA 686 2.47e+01 c.94.1.2,c.94.1.2 131208,131209 1ovtA 686 2.47e+01 c.94.1.2,c.94.1.2 35882,35883 1l8tA 263 2.47e+01 d.144.1.6 73702 1j7lA 264 2.48e+01 d.144.1.6 62697 1kk9A 221 2.52e+01 d.115.1.1 77432 1hlvA 131 2.57e+01 a.4.1.7,a.4.1.7 65854,65855 1nykA 165 2.57e+01 b.33.1.1 86408 1yudA 170 2.61e+01 b.82.1.16 124046 2b5aA 77 2.64e+01 a.35.1.3 127882 1qbjA 81 2.67e+01 1qbjA a.4.5.19 16155 2jdiH 146 3.05e+01 a.2.10.1,b.93.1.1 138273,138274 1s7oA 113 3.09e+01 a.4.13.3 105354 2auwA 170 3.21e+01 a.35.1.10,d.331.1.1 127339,127340 1dotA 686 3.29e+01 c.94.1.2,c.94.1.2 35876,35877 1l1jA 239 3.37e+01 b.47.1.1 84516 1dwuA 213 3.37e+01 1cjsA e.24.1.1 43355 1uxcA 65 3.44e+01 a.35.1.5 17119 2g7uA 257 3.48e+01 1nj8A 459 3.51e+01 c.51.1.1,d.68.5.1,d.104.1.1 85769,85770,85771 1f2tB 148 3.71e+01 1f2tB 2p11A 231 3.77e+01 1ii8B 174 3.98e+01 1f2tB 1ckiA 317 4.00e+01 1csn d.144.1.7 41660 2o38A 120 4.01e+01 1j4aA 333 4.03e+01 c.2.1.4,c.23.12.1 71502,71503 2q6oA 283 4.03e+01 2ew0A 192 4.03e+01 d.310.1.1 132445 2q6kA 283 4.05e+01 2q6lA 285 4.07e+01 2gxbA 66 4.10e+01 a.4.5.19 135830 2va8A 715 4.17e+01 1yioA 208 4.18e+01 a.4.6.2,c.23.1.1 123326,123327 1z3eA 132 4.22e+01 c.47.1.12 124400 2rn7A 108 4.22e+01 1o65A 246 4.42e+01 b.58.1.2 92544 1l0oC 243 4.55e+01 a.4.13.2 73405 1jjgA 102 4.56e+01 b.40.4.5 71696 2r2yA 153 4.58e+01 2eobA 124 4.70e+01 2o57A 297 4.75e+01 1n40A 396 4.79e+01 a.104.1.1 79977 1us8B 144 4.86e+01 3b8cA 885 4.98e+01 1n6cA 297 5.04e+01 b.76.2.1,b.85.7.1 80123,80124 2g7sA 194 5.07e+01 a.4.1.9,a.121.1.1 134737,134738 2opkA 112 5.07e+01 2qc7A 240 5.23e+01 1mufA 257 5.24e+01 b.76.2.1,b.85.7.1 79483,79484 1mt5A 537 5.40e+01 c.117.1.1 79430 2q2eB 621 5.48e+01 1j49A 333 5.54e+01 c.2.1.4,c.23.12.1 71498,71499 2ogtA 498 5.61e+01 2ogsA 498 5.64e+01 2z59A 109 5.67e+01 1sbyA 254 5.69e+01 c.2.1.2 118930 1mt6A 280 5.73e+01 b.76.2.1,b.85.7.1 79446,79447 2ffhA 425 5.75e+01 1ng1 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1h3iA 293 5.83e+01 b.76.2.1,b.85.7.1 76635,76636 1kolA 398 5.87e+01 b.35.1.2,c.2.1.1 77474,77475 1kdkA 177 5.89e+01 b.29.1.4 72351 1lhwA 189 5.91e+01 b.29.1.4 77966 2bnmA 198 5.95e+01 a.35.1.3,b.82.1.10 128835,128836 1gv3A 248 6.00e+01 a.2.11.1,d.44.1.1 70585,70586 1vpbA 451 6.00e+01 d.283.1.1 113950 3bboO 135 6.02e+01 2aalA 131 6.04e+01 d.80.1.6 126483 2zodA 345 6.22e+01 1faiL 214 6.24e+01 8fabA b.1.1.1,b.1.1.2 19844,20948 1tejB 64 6.31e+01 g.20.1.1 106816 2gs5A 198 6.40e+01 d.310.1.1 135577 1f5fA 205 6.42e+01 1d2sA b.29.1.4 24222 1z7mE 208 6.45e+01 c.94.1.1 124636 2hrxA 207 6.45e+01 d.310.1.1 136703 1ibqA 325 6.75e+01 2er7E b.50.1.2 62229 2ojwA 384 6.83e+01 2aagA 130 6.94e+01 d.80.1.6 126475 1rp3A 239 7.03e+01 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1ltzA 297 7.08e+01 d.178.1.1 74254 2oyrA 258 7.13e+01 1ak6A 174 7.18e+01 d.109.1.2 40865 2eccA 76 7.18e+01 a.4.1.1 132104 2ozjA 114 7.25e+01 2ch6A 344 7.30e+01 c.55.1.5,c.55.1.5 130461,130462 2r0qC 209 7.34e+01 2o3fA 111 7.35e+01 2ch5A 347 7.36e+01 c.55.1.5,c.55.1.5 130453,130454 2pgxA 258 7.40e+01 1bwdA 348 7.41e+01 1jdw d.126.1.2 41140 2aajA 130 7.41e+01 d.80.1.6 126481 1xe7A 203 7.66e+01 b.82.1.16 115213 2jt1A 77 7.95e+01