# List of top-scoring protein chains for T0501.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1i74A	309	5.47e-08	c.107.1.1	61867
1wpnA	188	1.52e-07	c.107.1.1	114826
2hawA	309	1.88e-07	c.107.1.1	136299
2enxA	310	2.01e-07		
1wppA	311	2.95e-07	c.107.1.1	114828
1k20A	310	3.75e-07	c.107.1.1	68027
2eb0A	307	4.37e-07		
2iw4A	309	8.49e-07		
1ir6A	424	0.000621	c.107.1.2	71342
2qb7A	397	0.6500		
1bisA	166	41.98	c.55.3.2	33650
1b92A	163	53.98	c.55.3.2	33654
2qtsA	438	57.08		
2fciA	105	57.37	d.93.1.1	133268
1h4pA	408	58.38	c.1.8.3	90617
3d01A	165	62.02		
1i6fA	60	62.68	g.3.7.1	61829
1hyvA	166	64.31	c.55.3.2	61424
2f7lA	455	65.57		
1bi4B	160	65.72	c.55.3.2	33667
1hv8A	367	68.00	c.37.1.19,c.37.1.19	32405,32406
1b9dA	163	73.00	c.55.3.2	33649
2b4jA	166	73.88	c.55.3.2	127833
1bizA	166	73.98	c.55.3.2	33652
1exqA	154	77.43	c.55.3.2	33646
2itgA	163	78.00	c.55.3.2	33669
2a9fA	398	78.07		
1hmcA	148	78.66	a.26.1.2	16867
1wzaA	488	80.68	b.71.1.1,c.1.8.1	121489,121490
1bl3A	160	81.09	c.55.3.2	33655
1bhlA	151	81.34	c.55.3.2	33662
2oepA	349	86.52		
1zzqA	420	86.77	d.174.1.1	125914
1p6kA	421	87.21	d.174.1.1	94177
1zzuA	420	88.45