# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.93e-27 c.107.1.1 68027 1i74A 309 4.48e-27 c.107.1.1 61867 2eb0A 307 1.74e-20 1wpnA 188 5.38e-20 c.107.1.1 114826 1ir6A 424 1.32e-10 c.107.1.2 71342 2qb7A 397 8.09e-08 2oq1A 254 1.845 d.93.1.1,d.93.1.1 139220,139221 1uwcA 261 2.301 c.69.1.17 100101 1tib 269 3.339 1yt8A 539 3.446 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1xqwA 293 4.417 1d2mA 665 5.136 c.37.1.19,c.37.1.19 32417,32418 1uirA 314 5.994 c.66.1.17 99429 1uswA 260 6.101 c.69.1.17 99895 1a81A 254 8.178 d.93.1.1,d.93.1.1 40507,40508 2ez9A 603 11.18 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2bm8A 236 12.32 c.66.1.50 128771 1th8B 116 15.79 c.13.2.1 106909 1tibA 269 16.63 c.69.1.17 34738 1iz7A 295 17.19 c.69.1.8 76982 2bjhA 260 17.62 1mtzA 293 17.83 c.69.1.7 79467 1pjqA 457 18.20 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1b8oA 284 19.07 c.56.2.1 33762 2fz4A 237 19.83 c.37.1.19 134419 1j6uA 469 20.06 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2djiA 590 20.12 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1c4oA 664 21.23 c.37.1.19,c.37.1.19 32415,32416 1ybhA 590 22.36 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1r8eA 278 25.13 a.6.1.3,d.60.1.1 104843,104844 1r6uA 437 25.90 c.26.1.1 97163 2o2iA 300 26.13 2qvbA 297 27.56 1cv2A 296 29.61 c.69.1.8 34680 1tt7A 330 32.44 b.35.1.2,c.2.1.1 112623,112624 1xwfA 431 33.17 c.2.1.4,c.23.12.3 122392,122393 2q28A 564 34.48 2psdA 318 35.39 2r55A 231 36.11 1dnpA 471 36.20 a.99.1.1,c.28.1.1 18775,31630 1zejA 293 39.20 1zcjA 463 42.64 1qhhA 167 44.30 c.37.1.19 32393 2ihtA 573 44.73 2dkb 433 46.68 2c31A 568 46.84 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1vjgA 218 47.01 c.23.10.6 100810 1ykwA 435 47.88 c.1.14.1,d.58.9.1 123565,123566 3bzwA 274 48.98 1cr6B 554 50.07 c.69.1.11,c.108.1.2 34688,43338 1vptA 348 50.41 c.66.1.25 34207 1xm3A 264 52.48 c.1.31.1 115461 2rjoA 332 52.62 2aqpA 164 56.77 1gt6A 269 58.06 c.69.1.17 76342 1j1iA 296 58.50 c.69.1.10 83977 1ra0A 430 59.78 b.92.1.2,c.1.9.5 111756,111757 2h1qA 270 60.65 1bn6A 294 60.96 c.69.1.8 34678 2eggA 297 60.97 1nbcA 155 62.04 b.2.2.2 22390 2i2wA 212 63.68 1azwA 313 63.92 c.69.1.7 34658 2r6r1 338 64.41 2dpoA 319 65.01 1rq2A 382 66.64 c.32.1.1,d.79.2.1 105048,105049 1w5fA 353 66.77 c.32.1.1,d.79.2.1 114247,114248 1gpjA 404 67.24 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2obdA 476 67.41 1v8bA 479 67.81 c.2.1.4,c.23.12.3 113564,113565 3brsA 289 67.89 1ny1A 240 69.55 c.6.2.3 86395 2v6oA 596 72.41 2i3dA 249 72.87 1m6iA 493 75.60 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1qe5A 266 79.68 c.56.2.1 33784 2fuqA 747 80.61 1poxA 585 82.61 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1wm1A 317 82.82 c.69.1.7 109405 2og1A 286 83.81 2cjsC 62 86.19 1imjA 210 87.06 c.69.1.23 71246 2e3jA 356 88.16 1d6jA 211 88.71 c.37.1.4 31940