# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.55e-26 c.107.1.1 68027 1i74A 309 3.28e-26 c.107.1.1 61867 2eb0A 307 1.64e-19 1wpnA 188 2.58e-19 c.107.1.1 114826 1ir6A 424 5.94e-10 c.107.1.2 71342 2qb7A 397 1.01e-06 2oq1A 254 1.532 d.93.1.1,d.93.1.1 139220,139221 1yt8A 539 1.773 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1vmeA 410 2.774 c.23.5.1,d.157.1.3 108893,108894 1d2mA 665 5.271 c.37.1.19,c.37.1.19 32417,32418 2ez9A 603 5.337 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1th8B 116 6.737 c.13.2.1 106909 1tib 269 8.073 1a81A 254 8.353 d.93.1.1,d.93.1.1 40507,40508 1r8eA 278 9.322 a.6.1.3,d.60.1.1 104843,104844 2bm8A 236 9.359 c.66.1.50 128771 1b8oA 284 11.19 c.56.2.1 33762 2fz4A 237 11.45 c.37.1.19 134419 1xqwA 293 13.11 1qhhA 167 16.54 c.37.1.19 32393 2d5cA 263 16.92 1yksA 440 17.57 c.37.1.14,c.37.1.14 123561,123562 2q71A 356 18.98 1zejA 293 19.05 1uwcA 261 20.15 c.69.1.17 100101 1p4kA 295 22.63 d.153.1.5 87772 1ybhA 590 24.21 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1j6uA 469 25.03 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2vlbA 251 26.48 1jpkA 388 26.51 c.1.22.1 67026 1zcjA 463 27.14 2psdA 318 27.78 1m6iA 493 31.55 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1ny1A 240 32.20 c.6.2.3 86395 2djiA 590 38.13 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1mtzA 293 38.37 c.69.1.7 79467 1dosA 358 38.39 c.1.10.2 29175 1zuwA 272 39.63 1c1dA 355 39.69 c.2.1.7,c.58.1.1 30270,33918 1r6uA 437 39.81 c.26.1.1 97163 2ipxA 233 39.86 3be7A 408 40.03 1gm5A 780 41.71 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 8abp 306 43.13 2pwyA 258 45.08 1p3wA 404 45.73 c.67.1.3 87752 1gpjA 404 49.01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1kjqA 391 49.53 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2zatA 260 50.08 3nul 130 51.13 1ra0A 430 54.74 b.92.1.2,c.1.9.5 111756,111757 2yxeA 215 55.08 2juiA 33 56.13 1fc4A 401 56.85 c.67.1.4 59760 2o2iA 300 58.13 1qg6A 261 58.33 c.2.1.2 29919 1jkoC 52 58.83 a.4.1.2 66809 1lssA 140 59.53 c.2.1.9 74246 1xm3A 264 59.54 c.1.31.1 115461 1uswA 260 60.55 c.69.1.17 99895 2r6r1 338 60.95 1c4xA 285 61.29 c.69.1.10 34684 1gcoA 261 61.74 c.2.1.2 29884 2gcgA 330 65.29 2rjoA 332 66.73 1qpbA 563 66.95 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 3bzyB 83 68.28 1zckA 154 69.85 1c4oA 664 70.02 c.37.1.19,c.37.1.19 32415,32416 2hk9A 275 70.09 1z7yA 322 70.15 c.79.1.1 124679 1cv2A 296 70.20 c.69.1.8 34680 1je0A 236 70.23 c.56.2.1 66581 1tlfA 301 70.33 c.93.1.1 35687 1rq2A 382 70.77 c.32.1.1,d.79.2.1 105048,105049 1gt6A 269 71.09 c.69.1.17 76342 1xwfA 431 71.72 c.2.1.4,c.23.12.3 122392,122393 3bzwA 274 71.92 3dahA 319 72.15 2gufA 594 72.45 f.4.3.3 135736 2on8A 56 72.91 1wdyA 285 73.84 d.211.1.1 114541 1fmcA 255 75.57 c.2.1.2 29856 2qvbA 297 77.63 2aqpA 164 77.91 2o35A 105 78.41 3cz6A 168 78.60 2zhgA 154 81.12 1p77A 272 81.13 c.2.1.7,c.58.1.5 94214,94215 1c14A 262 85.12 c.2.1.2 29927 1qe5A 266 85.98 c.56.2.1 33784 1dkuA 317 88.23 c.61.1.2,c.61.1.2 34118,34119 1bw9A 356 89.63 c.2.1.7,c.58.1.1 30274,33922