# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.88e-29 c.107.1.1 68027 1i74A 309 7.36e-29 c.107.1.1 61867 2eb0A 307 1.39e-22 1wpnA 188 4.66e-21 c.107.1.1 114826 1ir6A 424 1.04e-10 c.107.1.2 71342 2qb7A 397 1.84e-08 2oq1A 254 0.3888 d.93.1.1,d.93.1.1 139220,139221 1yt8A 539 0.3931 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1a81A 254 0.5382 d.93.1.1,d.93.1.1 40507,40508 2ez9A 603 5.798 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1th8B 116 6.123 c.13.2.1 106909 1tib 269 10.57 2bm8A 236 11.30 c.66.1.50 128771 2q71A 356 11.42 1uwcA 261 13.19 c.69.1.17 100101 1xqwA 293 14.04 2ejaA 338 14.42 3bzwA 274 15.32 1zcjA 463 16.40 2q28A 564 16.70 1t5hX 504 20.04 e.23.1.1 106449 1ybhA 590 20.60 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2psdA 318 21.18 1vmeA 410 21.76 c.23.5.1,d.157.1.3 108893,108894 2d5cA 263 22.32 1cv2A 296 22.68 c.69.1.8 34680 2o2iA 300 23.58 1jpkA 388 24.25 c.1.22.1 67026 1mdbA 539 24.26 e.23.1.1 79008 2v6oA 596 25.06 1uswA 260 26.36 c.69.1.17 99895 1j6uA 469 30.01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2ihtA 573 30.17 2qvbA 297 30.25 1zejA 293 30.27 1g2oA 268 30.93 c.56.2.1 60228 1uirA 314 33.28 c.66.1.17 99429 2djiA 590 34.43 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1b8oA 284 38.90 c.56.2.1 33762 1iz7A 295 39.82 c.69.1.8 76982 1oywA 523 40.38 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1pjqA 457 41.95 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1amuA 563 42.79 e.23.1.1 43351 2dkb 433 43.18 1bn6A 294 44.22 c.69.1.8 34678 1r8eA 278 45.97 a.6.1.3,d.60.1.1 104843,104844 1mtzA 293 47.74 c.69.1.7 79467 1qe5A 266 48.96 c.56.2.1 33784 2p97A 201 51.21 2hdhA 293 52.12 a.100.1.3,c.2.1.6 18795,30199 2bjhA 260 54.22 2c31A 568 56.00 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1ra0A 430 58.57 b.92.1.2,c.1.9.5 111756,111757 1d2mA 665 58.75 c.37.1.19,c.37.1.19 32417,32418 1o4uA 285 59.96 c.1.17.1,d.41.2.1 86624,86625 2r55A 231 60.94 1vmkA 277 62.48 c.56.2.1 113680 1ozhA 566 63.78 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1ayaA 101 63.98 d.93.1.1 40460 2vlbA 251 66.05 1qhhA 167 67.90 c.37.1.19 32393 1c4xA 285 69.90 c.69.1.10 34684 2fv2A 268 70.95 1gpjA 404 71.74 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1fc4A 401 71.99 c.67.1.4 59760 1bn7A 294 72.36 c.69.1.8 34677 1r6uA 437 73.49 c.26.1.1 97163 1ny1A 240 74.47 c.6.2.3 86395 2v7bA 529 78.55 1xm3A 264 81.39 c.1.31.1 115461 1s9uA 207 81.73 a.184.1.1 105390 2fz4A 237 85.69 c.37.1.19 134419 1hgxA 183 86.66 c.61.1.1 34027 3c2bA 221 89.02 2og1A 286 89.49 1xwfA 431 89.63 c.2.1.4,c.23.12.3 122392,122393