# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.90e-26 c.107.1.1 68027 1i74A 309 1.47e-25 c.107.1.1 61867 2eb0A 307 2.13e-19 1wpnA 188 9.67e-19 c.107.1.1 114826 1ir6A 424 8.26e-10 c.107.1.2 71342 2qb7A 397 2.97e-07 1yt8A 539 0.8508 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2oq1A 254 1.022 d.93.1.1,d.93.1.1 139220,139221 1a81A 254 2.369 d.93.1.1,d.93.1.1 40507,40508 2bm8A 236 5.846 c.66.1.50 128771 2ez9A 603 6.221 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1tib 269 7.936 2q71A 356 10.07 1xqwA 293 10.12 1uwcA 261 11.06 c.69.1.17 100101 1d2mA 665 11.87 c.37.1.19,c.37.1.19 32417,32418 2psdA 318 12.09 2o2iA 300 13.69 1cv2A 296 13.83 c.69.1.8 34680 1th8B 116 15.68 c.13.2.1 106909 2qvbA 297 16.03 1jpkA 388 16.58 c.1.22.1 67026 2ihtA 573 17.93 1uswA 260 18.74 c.69.1.17 99895 1j6uA 469 19.46 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1zcjA 463 20.72 1iz7A 295 22.21 c.69.1.8 76982 1xm3A 264 24.61 c.1.31.1 115461 1ybhA 590 24.95 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2ejaA 338 25.63 1mtzA 293 25.84 c.69.1.7 79467 1uirA 314 29.50 c.66.1.17 99429 2bjhA 260 30.60 1zejA 293 30.91 1c4xA 285 34.52 c.69.1.10 34684 1r6uA 437 36.14 c.26.1.1 97163 1gpjA 404 37.63 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1ny1A 240 38.23 c.6.2.3 86395 2uz1A 563 38.24 2d5cA 263 42.27 1b8oA 284 44.71 c.56.2.1 33762 2v6oA 596 46.54 3bzwA 274 46.60 1bn6A 294 48.27 c.69.1.8 34678 1poxA 585 56.14 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1ra0A 430 58.73 b.92.1.2,c.1.9.5 111756,111757 3c01E 98 60.10 2hx1A 284 60.23 1gt6A 269 61.04 c.69.1.17 76342 2vt1B 93 61.05 1bn7A 294 61.35 c.69.1.8 34677 1cqwA 295 62.66 c.69.1.8 34679 2dkb 433 62.85 1j1iA 296 63.34 c.69.1.10 83977 1c4oA 664 63.61 c.37.1.19,c.37.1.19 32415,32416 2r55A 231 64.49 1cr6B 554 65.56 c.69.1.11,c.108.1.2 34688,43338 2djiA 590 65.98 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2bwjA 199 66.17 1r8eA 278 67.33 a.6.1.3,d.60.1.1 104843,104844 1ml4A 308 68.27 c.78.1.1,c.78.1.1 79255,79256 2yxeA 215 68.81 3bzyB 83 69.89 1m6iA 493 70.09 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2rjoA 332 71.55 2p97A 201 76.07 2fv2A 268 76.47 2pieA 138 77.40 1pjqA 457 78.31 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fz4A 237 79.27 c.37.1.19 134419 1qe5A 266 79.81 c.56.2.1 33784 2og1A 286 80.25 1vmkA 277 80.39 c.56.2.1 113680 1vmeA 410 80.96 c.23.5.1,d.157.1.3 108893,108894 1o4uA 285 81.16 c.1.17.1,d.41.2.1 86624,86625 2aqpA 164 81.70 2qrdA 137 82.03 1tlfA 301 87.26 c.93.1.1 35687 2o35A 105 88.77