# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.04e-25 c.107.1.1 68027 1i74A 309 1.43e-24 c.107.1.1 61867 2eb0A 307 4.87e-19 1wpnA 188 3.92e-18 c.107.1.1 114826 1ir6A 424 1.42e-09 c.107.1.2 71342 2qb7A 397 4.50e-07 1a81A 254 0.4860 d.93.1.1,d.93.1.1 40507,40508 1zcjA 463 0.5002 3b9jC 763 0.8406 1bn6A 294 1.189 c.69.1.8 34678 2hdhA 293 1.761 a.100.1.3,c.2.1.6 18795,30199 1yt8A 539 1.897 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2ez9A 603 2.561 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2aqpA 164 4.575 1zejA 293 4.728 2oq1A 254 4.804 d.93.1.1,d.93.1.1 139220,139221 1cv2A 296 5.188 c.69.1.8 34680 1pvvA 315 5.231 c.78.1.1,c.78.1.1 95190,95191 2fq6A 415 8.569 c.67.1.3 133939 1pjqA 457 9.503 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2nxwA 565 10.09 3db2A 354 10.64 2qddA 378 11.65 2hx1A 284 13.29 1jr1A 514 13.33 c.1.5.1,d.37.1.1,d.37.1.1 63241,63242,63243 2fnuA 375 14.55 c.67.1.4 133831 2bjhA 260 15.06 1th8B 116 16.41 c.13.2.1 106909 1tib 269 16.91 1uwcA 261 17.54 c.69.1.17 100101 2pqmA 343 17.79 1xm3A 264 18.97 c.1.31.1 115461 1f0yA 302 19.05 a.100.1.3,c.2.1.6 18793,30197 2bm8A 236 19.87 c.66.1.50 128771 1z9nA 177 20.87 2ihtA 573 20.88 1pvdA 537 21.10 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2vccA 891 21.71 1jcrB 437 22.31 a.102.4.3 66507 1gq2A 555 23.37 c.2.1.7,c.58.1.3 70308,70309 1lvlA 458 25.54 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2rjoA 332 25.58 2qcvA 332 26.26 1z45A 699 26.83 b.30.5.4,c.2.1.2 124427,124428 1gm5A 780 27.55 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1jihA 531 27.62 d.240.1.1,e.8.1.7 90374,90375 1m2kA 249 28.38 c.31.1.5 84754 1v8bA 479 28.96 c.2.1.4,c.23.12.3 113564,113565 1t9bA 677 29.13 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1qopB 396 29.19 c.79.1.1 35270 2q71A 356 30.31 1z9pA 155 31.32 1dgmA 363 32.57 c.72.1.1 34936 1zjaA 557 33.15 9gafA 295 33.85 d.153.1.5 42008 2ze0A 555 34.17 2aznA 219 34.90 c.71.1.2 127608 2q4aA 330 35.69 b.82.2.8 139839 2phzA 311 37.29 1v71A 323 37.45 c.79.1.1 119859 1womA 271 37.49 1z7yA 322 38.07 c.79.1.1 124679 1rhsA 296 39.58 c.46.1.2,c.46.1.2 32703,32704 1gc0A 398 39.97 c.67.1.3 70168 1hnjA 317 40.83 c.95.1.2,c.95.1.2 35969,35970 2ixdA 242 41.18 1suwA 249 41.40 e.52.1.1 106027 2aqqA 164 41.84 2olnA 397 42.54 1rm6A 769 43.63 d.41.1.1,d.133.1.1 111872,111873 2qm8A 337 44.55 1kijA 390 44.83 d.14.1.3,d.122.1.2 72514,72515 1qr6A 584 45.25 c.2.1.7,c.58.1.3 30293,33941 2nloA 302 45.60 2hdiA 639 47.89 2o7cA 398 48.06 1wzlA 585 48.32 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1d2mA 665 48.67 c.37.1.19,c.37.1.19 32417,32418 1jpkA 388 50.46 c.1.22.1 67026 2ejaA 338 51.27 1bheA 376 52.25 b.80.1.3 28030 1fc4A 401 53.51 c.67.1.4 59760 1fpzA 212 54.13 c.45.1.1 59976 2q28A 564 54.20 1vemA 516 54.29 b.3.1.1,c.1.8.1 120021,120022 1p5dX 463 54.32 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2q4zA 312 55.19 2fgeA 995 57.37 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2b3yA 888 58.18 c.8.2.1,c.83.1.1 127803,127804 1wqaA 455 58.29 1xqwA 293 58.62 2qezA 455 58.68 1n4qB 377 58.90 a.102.4.3 91636 1iz7A 295 59.02 c.69.1.8 76982 1xi9A 406 60.41 c.67.1.1 115355 1d4fA 431 60.48 c.2.1.4,c.23.12.3 30110,31370 2i2wA 212 62.01 1m3sA 186 62.52 c.80.1.3 78573 1eg5A 384 62.62 c.67.1.3 34429 1efpB 252 63.03 c.26.2.3 31636 3d64A 494 63.83 2auaA 224 67.32 d.166.1.6 127326 2z61A 370 67.70 1b8oA 284 67.80 c.56.2.1 33762 3c10A 423 67.96 1mioA 534 68.63 c.92.2.3 35601 1aw2A 256 69.24 c.1.1.1 28523 1k4iA 233 69.44 d.115.1.2 72056 4ubpC 570 69.98 b.92.1.1,c.1.9.2 28431,29053 1rlmA 271 70.17 c.108.1.10 111860 2z8fA 412 72.61 2f7lA 455 72.79 1x6vA 630 73.09 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1j1iA 296 73.79 c.69.1.10 83977 1lpjA 133 74.03 b.60.1.2 78123 1qycA 308 74.46 c.2.1.2 96581 1jmxA 494 74.93 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1lnqA 336 75.02 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1uohA 226 75.17 d.211.1.1 99690 7aatA 401 76.42 c.67.1.1 34250 1wkyA 464 76.90 b.18.1.31,c.1.8.3 120992,120993 1j9lA 247 77.91 c.106.1.1 62762 1kjqA 391 77.92 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2jc7A 244 78.38 1e5eA 404 79.78 c.67.1.3 59265 1yaaA 412 79.79 c.67.1.1 34280 2bwjA 199 80.27 2an1A 292 80.61 1c2pA 576 81.87 e.8.1.4 43117 3beoA 375 81.89 1nf2A 268 83.56 c.108.1.10 91849 1oywA 523 84.12 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 3c1oA 321 84.93 1ejrC 567 85.04 b.92.1.1,c.1.9.2 28420,29042 1k89 449 86.29 1k1aA 241 86.73 d.211.1.1 67992 1ppjB 439 88.39 d.185.1.1,d.185.1.1 104254,104255