# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.04e-25 c.107.1.1 68027 1i74A 309 8.49e-25 c.107.1.1 61867 2eb0A 307 1.67e-19 1wpnA 188 2.19e-18 c.107.1.1 114826 1ir6A 424 1.64e-09 c.107.1.2 71342 2qb7A 397 2.33e-07 1yt8A 539 0.5762 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2oq1A 254 4.130 d.93.1.1,d.93.1.1 139220,139221 1tib 269 6.910 1a81A 254 7.476 d.93.1.1,d.93.1.1 40507,40508 2bm8A 236 7.828 c.66.1.50 128771 1uwcA 261 9.035 c.69.1.17 100101 1cv2A 296 10.00 c.69.1.8 34680 1d2mA 665 10.67 c.37.1.19,c.37.1.19 32417,32418 1xqwA 293 10.75 2ez9A 603 11.64 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2ihtA 573 15.35 2psdA 318 15.95 2o2iA 300 16.04 1ybhA 590 16.39 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2q71A 356 16.57 2qvbA 297 17.49 1uswA 260 17.57 c.69.1.17 99895 2v6oA 596 22.22 2ejaA 338 22.28 1uirA 314 22.43 c.66.1.17 99429 1mtzA 293 23.64 c.69.1.7 79467 2bjhA 260 23.77 1jpkA 388 24.69 c.1.22.1 67026 1j6uA 469 25.83 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1iz7A 295 27.83 c.69.1.8 76982 1th8B 116 30.05 c.13.2.1 106909 1xm3A 264 30.57 c.1.31.1 115461 1c4xA 285 31.38 c.69.1.10 34684 1ny1A 240 32.01 c.6.2.3 86395 1zcjA 463 35.75 1b8oA 284 36.40 c.56.2.1 33762 1r6uA 437 37.81 c.26.1.1 97163 1gpjA 404 47.13 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1bn6A 294 47.70 c.69.1.8 34678 2uz1A 563 47.99 1gt6A 269 48.71 c.69.1.17 76342 2p97A 201 49.44 2aqpA 164 50.20 1ra0A 430 52.87 b.92.1.2,c.1.9.5 111756,111757 1cqwA 295 54.45 c.69.1.8 34679 1pjqA 457 55.79 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ml4A 308 60.48 c.78.1.1,c.78.1.1 79255,79256 2hx1A 284 60.88 1zejA 293 61.47 1yirA 408 61.88 c.1.17.2,d.41.2.2 123330,123331 2d5cA 263 62.53 1j1iA 296 63.24 c.69.1.10 83977 1c4oA 664 63.34 c.37.1.19,c.37.1.19 32415,32416 1cr6B 554 66.12 c.69.1.11,c.108.1.2 34688,43338 3bzwA 274 66.71 1poxA 585 67.45 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2r55A 231 71.94 1tksA 204 72.00 d.115.1.2 107114 2og1A 286 72.67 1bn7A 294 76.36 c.69.1.8 34677 1t5hX 504 77.61 e.23.1.1 106449 1zuwA 272 81.28 2a9fA 398 81.71 1v8aA 265 82.09 c.72.1.2 100494 1u2eA 289 84.67 1dnpA 471 85.83 a.99.1.1,c.28.1.1 18775,31630 2e3jA 356 86.38 1q6zA 528 87.45 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1tibA 269 87.99 c.69.1.17 34738 2bwjA 199 88.54 1o4uA 285 89.38 c.1.17.1,d.41.2.1 86624,86625