# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k20A	310	6.22e-30	c.107.1.1	68027
1i74A	309	2.08e-29	c.107.1.1	61867
2eb0A	307	8.91e-23		
1wpnA	188	8.58e-21	c.107.1.1	114826
1ir6A	424	5.06e-11	c.107.1.2	71342
2qb7A	397	4.69e-08		
1yt8A	539	0.8783	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2oq1A	254	1.564	d.93.1.1,d.93.1.1	139220,139221
2q71A	356	4.161		
1jpkA	388	5.856	c.1.22.1	67026
1cv2A	296	9.384	c.69.1.8	34680
1a81A	254	11.18	d.93.1.1,d.93.1.1	40507,40508
2r55A	231	12.56		
1xqwA	293	12.86		
1tib	269	13.50		
1uwcA	261	16.82	c.69.1.17	100101
1pjqA	457	19.35	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2ejaA	338	21.37		
1b8oA	284	22.38	c.56.2.1	33762
1iz7A	295	22.65	c.69.1.8	76982
1d2mA	665	22.76	c.37.1.19,c.37.1.19	32417,32418
3bzwA	274	27.17		
2pv7A	298	29.25		
1tksA	204	29.26	d.115.1.2	107114
1vmeA	410	29.99	c.23.5.1,d.157.1.3	108893,108894
2d5cA	263	30.94		
1th8B	116	32.13	c.13.2.1	106909
1j1iA	296	32.90	c.69.1.10	83977
2fz4A	237	34.27	c.37.1.19	134419
1xm3A	264	38.99	c.1.31.1	115461
1dosA	358	39.94	c.1.10.2	29175
1uirA	314	42.25	c.66.1.17	99429
1zejA	293	42.96		
1ztcA	221	44.11	d.157.1.11	125635
2dkb	433	45.33		
2psdA	318	45.84		
2ez9A	603	47.61	c.31.1.3,c.36.1.5,c.36.1.9	132627,132628,132629
1r8eA	278	50.74	a.6.1.3,d.60.1.1	104843,104844
1zcjA	463	51.09		
2o2iA	300	53.70		
1bn6A	294	56.78	c.69.1.8	34678
2bjhA	260	57.52		
3b96A	587	58.25		
1vmkA	277	59.68	c.56.2.1	113680
1qhhA	167	63.38	c.37.1.19	32393
1ny1A	240	63.44	c.6.2.3	86395
1j6uA	469	64.52	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
1uswA	260	67.25	c.69.1.17	99895
1jyhA	157	69.61	d.60.1.3	71956
1k3pA	426	70.75	a.103.1.1	77237
2qvbA	297	72.19		
1c4xA	285	72.93	c.69.1.10	34684
1mtzA	293	73.98	c.69.1.7	79467
1gm5A	780	75.94	a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19	65298,65299,65300,65301
2v6oA	596	75.98		
3bioA	304	76.70		
1qe5A	266	77.07	c.56.2.1	33784
2fuqA	747	77.22		
2vlbA	251	77.26		
2fv2A	268	79.18		
2p97A	201	79.23		
2dpoA	319	79.25		
1gpjA	404	79.94	a.151.1.1,c.2.1.7,d.58.39.1	65451,65452,65453
2hx1A	284	83.05		
2aqpA	164	83.90		
2rjoA	332	83.94		
3nul	130	86.58		
1ynuA	473	86.95	c.67.1.4	123762
1o4uA	285	87.15	c.1.17.1,d.41.2.1	86624,86625
2infA	359	87.79		
2d1sA	548	88.42