# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k20A	310	1.08e-28	c.107.1.1	68027
1i74A	309	2.42e-28	c.107.1.1	61867
2eb0A	307	6.15e-22		
1wpnA	188	1.42e-20	c.107.1.1	114826
1ir6A	424	4.79e-11	c.107.1.2	71342
2qb7A	397	3.83e-08		
1yt8A	539	0.4541	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2oq1A	254	1.731	d.93.1.1,d.93.1.1	139220,139221
1a81A	254	3.315	d.93.1.1,d.93.1.1	40507,40508
2q71A	356	6.529		
1d2mA	665	8.633	c.37.1.19,c.37.1.19	32417,32418
1jpkA	388	10.04	c.1.22.1	67026
1r8eA	278	10.24	a.6.1.3,d.60.1.1	104843,104844
1th8B	116	10.25	c.13.2.1	106909
2ejaA	338	15.47		
1uwcA	261	16.07	c.69.1.17	100101
2bm8A	236	16.36	c.66.1.50	128771
1tib	269	17.73		
1zejA	293	18.53		
1vmeA	410	20.36	c.23.5.1,d.157.1.3	108893,108894
2d5cA	263	21.88		
1qhhA	167	22.51	c.37.1.19	32393
2ez9A	603	23.22	c.31.1.3,c.36.1.5,c.36.1.9	132627,132628,132629
1xm3A	264	26.43	c.1.31.1	115461
1xqwA	293	27.00		
2r55A	231	29.14		
3bzwA	274	29.66		
1uirA	314	31.46	c.66.1.17	99429
1pjqA	457	33.00	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2vlbA	251	35.89		
1j6uA	469	39.10	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
1uswA	260	39.55	c.69.1.17	99895
1c4oA	664	41.07	c.37.1.19,c.37.1.19	32415,32416
2fv2A	268	41.60		
1iz7A	295	41.95	c.69.1.8	76982
1zcjA	463	42.46		
1gm5A	780	44.02	a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19	65298,65299,65300,65301
1b8oA	284	45.16	c.56.2.1	33762
1r6uA	437	46.80	c.26.1.1	97163
1cv2A	296	46.93	c.69.1.8	34680
2fz4A	237	46.99	c.37.1.19	134419
2fuqA	747	52.26		
2qorA	204	52.85		
2qvbA	297	55.04		
1ybhA	590	55.99	c.31.1.3,c.36.1.5,c.36.1.9	122891,122892,122893
2bjhA	260	57.57		
2o2iA	300	60.03		
1mtzA	293	60.91	c.69.1.7	79467
1gpjA	404	62.39	a.151.1.1,c.2.1.7,d.58.39.1	65451,65452,65453
1ra0A	430	63.56	b.92.1.2,c.1.9.5	111756,111757
1k3pA	426	65.12	a.103.1.1	77237
3nul	130	68.15		
2rjoA	332	72.00		
2bwjA	199	74.32		
1ny1A	240	74.65	c.6.2.3	86395
1qe5A	266	75.28	c.56.2.1	33784
2juiA	33	78.51		
2v6oA	596	82.26		
2afcA	168	84.84	c.50.1.2	126676
1z7wA	322	85.20	c.79.1.1	124674
1je0A	236	86.87	c.56.2.1	66581
2aqpA	164	87.14