# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.51e-24 c.107.1.1 68027 1i74A 309 3.43e-23 c.107.1.1 61867 2eb0A 307 9.99e-19 1wpnA 188 6.75e-18 c.107.1.1 114826 1ir6A 424 2.64e-10 c.107.1.2 71342 2qb7A 397 1.00e-07 1iz7A 295 3.790 c.69.1.8 76982 2psdA 318 7.063 1mj5A 302 8.340 c.69.1.8 91285 1yt8A 539 8.566 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1x8hA 228 10.01 d.157.1.1 114961 8abp 306 10.13 1xqwA 293 10.23 1vmeA 410 12.44 c.23.5.1,d.157.1.3 108893,108894 1cv2A 296 12.88 c.69.1.8 34680 8abpA 306 13.99 c.93.1.1 35647 2bm8A 236 14.33 c.66.1.50 128771 2oq1A 254 14.38 d.93.1.1,d.93.1.1 139220,139221 1lgyA 269 16.11 c.69.1.17 34758 1uwcA 261 16.89 c.69.1.17 100101 1tib 269 17.26 1uswA 260 17.72 c.69.1.17 99895 1x8gA 227 18.08 d.157.1.1 114960 1cqwA 295 18.98 c.69.1.8 34679 2bjhA 260 19.41 1qhhA 167 22.23 c.37.1.19 32393 3c5vA 316 22.41 1ml4A 308 26.90 c.78.1.1,c.78.1.1 79255,79256 1a81A 254 26.90 d.93.1.1,d.93.1.1 40507,40508 1bn6A 294 28.53 c.69.1.8 34678 1xtpA 254 28.71 c.66.1.42 116031 1rjdA 334 28.94 c.66.1.37 97558 1vjgA 218 29.27 c.23.10.6 100810 2o2iA 300 32.15 3brsA 289 32.24 1tibA 269 34.38 c.69.1.17 34738 1mtzA 293 35.29 c.69.1.7 79467 2og1A 286 38.73 1cr6B 554 44.91 c.69.1.11,c.108.1.2 34688,43338 1bn7A 294 45.09 c.69.1.8 34677 2ohhA 404 45.51 3c6qA 311 45.80 2pujA 286 46.60 1o4uA 285 47.76 c.1.17.1,d.41.2.1 86624,86625 1jf8A 131 48.10 c.44.1.1 66621 1d2mA 665 50.21 c.37.1.19,c.37.1.19 32417,32418 2dkaA 544 52.04 1p15A 253 53.01 c.45.1.2 93894 2z5bA 151 53.08 1fztA 211 53.18 c.60.1.1 60158 1nytA 271 53.65 c.2.1.7,c.58.1.5 86417,86418 1b6gA 310 54.17 c.69.1.8 34661 1ede 310 54.66 2driA 271 55.69 c.93.1.1 35637 2yxeA 215 55.71 1oc7A 364 56.10 c.6.1.1 86794 1qr6A 584 57.55 c.2.1.7,c.58.1.3 30293,33941 2gptA 523 57.85 2q0iA 303 57.85 1pv1A 299 58.87 c.69.1.34 111639 1b6g 310 59.47 2eggA 297 60.75 1a7tA 232 60.80 d.157.1.1 42041 2bvwA 362 61.82 c.6.1.1 30666 1bvwA 360 65.64 c.6.1.1 30668 2d5cA 263 66.27 1tqhA 247 70.03 c.69.1.29 107225 1a8qA 274 72.08 c.69.1.12 34702 1y44A 320 74.45 d.157.1.7 122608 1z7yA 322 74.68 c.79.1.1 124679 2e3jA 356 75.61 1u2eA 289 77.15 2hhjA 267 77.33 c.60.1.1 136497 1gt6A 269 77.79 c.69.1.17 76342 3tglA 269 79.31 c.69.1.17 34733 1g5hA 454 80.01 c.51.1.1,d.104.1.1 60270,60271 2qvbA 297 80.87 1w5fA 353 80.98 c.32.1.1,d.79.2.1 114247,114248 2qorA 204 85.69 2v03A 303 87.76 1m2xA 223 88.04 d.157.1.1 84764