# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.22e-27 c.107.1.1 68027 1i74A 309 1.98e-26 c.107.1.1 61867 2eb0A 307 1.37e-19 1wpnA 188 7.42e-19 c.107.1.1 114826 1ir6A 424 8.88e-11 c.107.1.2 71342 2qb7A 397 3.56e-07 2oq1A 254 0.6054 d.93.1.1,d.93.1.1 139220,139221 1a81A 254 2.407 d.93.1.1,d.93.1.1 40507,40508 2ez9A 603 4.749 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1yt8A 539 4.996 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2uz1A 563 7.574 1mtzA 293 8.721 c.69.1.7 79467 1xqwA 293 8.777 2psdA 318 9.004 2i3dA 249 9.937 1iz7A 295 10.18 c.69.1.8 76982 1d2mA 665 11.11 c.37.1.19,c.37.1.19 32417,32418 2o2iA 300 11.83 1o0sA 605 12.38 c.2.1.7,c.58.1.3 86540,86541 1qr6A 584 13.13 c.2.1.7,c.58.1.3 30293,33941 2djiA 590 13.33 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 8abp 306 13.93 1cv2A 296 14.11 c.69.1.8 34680 1ozhA 566 14.52 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1pjqA 457 17.98 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1vmeA 410 19.39 c.23.5.1,d.157.1.3 108893,108894 8abpA 306 20.54 c.93.1.1 35647 2c31A 568 21.60 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1poxA 585 21.74 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1uirA 314 21.78 c.66.1.17 99429 2bm8A 236 22.05 c.66.1.50 128771 1gq2A 555 22.44 c.2.1.7,c.58.1.3 70308,70309 1w5fA 353 24.52 c.32.1.1,d.79.2.1 114247,114248 1ykwA 435 29.61 c.1.14.1,d.58.9.1 123565,123566 2qvbA 297 30.95 1mj5A 302 32.36 c.69.1.8 91285 1r8eA 278 33.44 a.6.1.3,d.60.1.1 104843,104844 2q28A 564 33.69 1c1dA 355 34.44 c.2.1.7,c.58.1.1 30270,33918 3bchA 253 36.14 1jpkA 388 38.24 c.1.22.1 67026 2h3hA 313 40.76 2qvcA 313 41.68 1ifcA 132 42.20 b.60.1.2 27173 1ybhA 590 42.35 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2q71A 356 43.55 2dstA 131 45.19 1icmA 131 46.85 b.60.1.2 27174 3ctpA 330 48.46 1ra0A 430 48.47 b.92.1.2,c.1.9.5 111756,111757 1uxoA 192 48.63 c.69.1.31 108121 2aw5A 541 49.92 3brsA 289 50.67 1bn6A 294 50.98 c.69.1.8 34678 3c6qA 311 51.12 2qnkA 286 51.66 1gehA 444 53.25 c.1.14.1,d.58.9.1 65181,65182 2p97A 201 53.34 2a3nA 355 55.32 2yxeA 215 56.89 1p9eA 331 57.50 d.157.1.5 104088 1uswA 260 57.52 c.69.1.17 99895 2og1A 286 58.89 1azwA 313 59.39 c.69.1.7 34658 1wm1A 317 62.14 c.69.1.7 109405 2h1qA 270 62.30 2i2wA 212 65.38 2h6eA 344 65.99 1csyA 112 68.47 d.93.1.1 40519 2eggA 297 68.99 1uwcA 261 74.97 c.69.1.17 100101 1cqwA 295 75.43 c.69.1.8 34679 2driA 271 77.13 c.93.1.1 35637 1bxkA 355 78.73 c.2.1.2 29803 1bmbA 123 79.60 d.93.1.1 40466 1tlfA 301 81.09 c.93.1.1 35687 1xwfA 431 83.05 c.2.1.4,c.23.12.3 122392,122393 1jyeA 349 84.52 c.93.1.1 67455 3d02A 303 86.28 1oc7A 364 87.59 c.6.1.1 86794 1x8gA 227 87.60 d.157.1.1 114960 2yyyA 343 87.61 2z5bA 151 87.75 1ml4A 308 88.07 c.78.1.1,c.78.1.1 79255,79256 1ii7A 333 89.70 d.159.1.4 62415 1vimA 200 89.88 c.80.1.3 100758