# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1i74A 309 8.05e-13 c.107.1.1 61867 1k20A 310 8.25e-12 c.107.1.1 68027 1wpnA 188 2.17e-09 c.107.1.1 114826 2eb0A 307 5.87e-07 1ir6A 424 3.40e-06 c.107.1.2 71342 2qb7A 397 0.006065 1k2yX 463 4.126 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1gtrA 553 4.181 b.53.1.2,c.26.1.1 26939,31578 1w5fA 353 5.417 c.32.1.1,d.79.2.1 114247,114248 1qtqA 553 5.593 b.53.1.2,c.26.1.1 26940,31579 2f7lA 455 7.030 1e5eA 404 7.181 c.67.1.3 59265 1bif 469 8.277 1bifA 469 8.536 c.37.1.7,c.60.1.4 31961,34003 2ddmA 283 8.856 2v3vA 723 9.269 1dgmA 363 10.62 c.72.1.1 34936 2yxtA 312 10.90 1rq2A 382 11.22 c.32.1.1,d.79.2.1 105048,105049 1psdA 409 11.48 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1lhpA 312 11.92 c.72.1.5 77960 2iv2X 715 12.89 b.52.2.2,c.81.1.1 137714,137715 1ub0A 258 13.52 c.72.1.2 88394 3cogA 403 13.86 2bifA 469 16.01 c.37.1.7,c.60.1.4 31963,34009 1fmjA 351 16.46 c.37.1.5 59879 2qenA 350 16.78 1jxhA 288 17.46 c.72.1.2 67415 1n2eA 300 17.47 c.26.1.4 85268 1bjwA 382 17.59 c.67.1.1 34349 2r6r1 338 17.69 1efaA 333 18.52 a.35.1.5,c.93.1.1 17106,35691 2f7kA 327 18.93 1sxjC 340 19.08 a.80.1.1,c.37.1.20 106085,106086 1tf5A 844 21.14 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1gdeA 389 21.55 c.67.1.1 60456 2e7zA 727 21.73 1ebfA 358 22.21 c.2.1.3,d.81.1.2 30033,39948 1vhvA 268 22.42 c.90.1.1 100704 1yizA 429 22.84 c.67.1.1 123375 1d7uA 433 22.86 c.67.1.4 34439 3bifA 468 22.97 c.37.1.7,c.60.1.4 31962,34008 2dkb 433 23.46 3cb2A 475 24.96 2g5cA 281 25.06 a.100.1.12,c.2.1.6 134646,134647 1x31B 404 25.13 1td2A 287 25.64 c.72.1.5 106765 1jyeA 349 28.49 c.93.1.1 67455 2axqA 467 29.72 1ihoA 283 30.68 c.26.1.4 62390 2napA 723 31.09 b.52.2.2,c.81.1.1 26926,35334 1gpmA 525 31.18 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1mrzA 293 31.35 b.43.5.1,c.26.1.3 91452,91453 1v8fA 276 31.65 c.26.1.4 100503 3bilA 348 31.89 2z4sA 440 32.76 1korA 400 32.91 c.26.2.1,d.210.1.1 72824,72825 2gagB 405 33.28 2qhpA 296 34.36 1dv2A 452 34.42 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2o0mA 345 35.29 1t2dA 322 35.42 c.2.1.5,d.162.1.1 99084,99085 2nvaA 372 36.15 1ldg 316 38.47 1el5A 389 39.31 c.3.1.2,d.16.1.3 30369,37937 2nsyA 271 41.13 c.26.2.1 31612 2in3A 216 41.32 1a76 326 41.54 1vl2A 421 41.71 c.26.2.1,d.210.1.1 108708,108709 1yqzA 438 42.66 1qmgA 524 43.36 a.100.1.2,c.2.1.6 18785,30182 1f0kA 364 43.67 c.87.1.2 35465 2a84A 300 43.96 c.26.1.4 126389 2yrxA 451 44.13 2q0lA 311 44.53 1ofuA 320 44.59 c.32.1.1,d.79.2.1 86972,86973 1nrwA 288 44.61 c.108.1.10 86128 2fq6A 415 47.06 c.67.1.3 133939 1ff9A 450 47.93 c.2.1.3,d.81.1.2 30039,39954 2zbwA 335 48.23 1qj5A 429 49.20 c.67.1.4 34493 2pkfA 334 49.29 3bh1A 507 49.94 1sffA 426 50.10 c.67.1.4 105482 1fp4A 492 50.36 c.92.2.3 76187 1b5pA 385 50.52 c.67.1.1 90403 1sc6A 404 51.14 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lc5A 364 51.14 c.67.1.1 73827 1ryiA 382 51.57 c.3.1.2,d.16.1.3 118813,118814 1aquA 297 51.83 c.37.1.5 31942 1vm7A 311 52.02 c.72.1.1 108884 1xngA 268 52.34 c.26.2.1 122186 1q7gA 359 53.78 c.2.1.3,d.81.1.2 96038,96039 1v2dA 381 56.55 c.67.1.1 108281 1wqaA 455 56.72 1dtyA 429 57.87 c.67.1.4 34495 3be7A 408 58.06 2po3A 424 58.20 1ehiA 377 58.63 c.30.1.2,d.142.1.1 31716,41484 2jg1A 330 59.92 1ceqA 316 61.01 c.2.1.5,d.162.1.1 30163,42130 1lldA 319 61.52 c.2.1.5,d.162.1.1 30177,42144 1mb4A 370 62.48 c.2.1.3,d.81.1.1 78908,78909 2v7pA 310 63.29 1w7lA 422 63.46 c.67.1.1 109226 1xwwA 157 63.99 1vhqA 232 65.14 c.23.16.2 100696 1uc8A 280 66.26 c.30.1.6,d.142.1.7 99165,99166 1rkd 309 67.38 1pswA 348 67.75 c.87.1.7 88287 2btoA 473 69.10 1vi9A 299 69.21 c.72.1.5 100750 2yw2A 424 69.21 1iqpA 327 69.39 a.80.1.1,c.37.1.20 62649,62650 1q1rA 431 69.80 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2qcvA 332 71.94 1ng4A 390 72.00 c.3.1.2,d.16.1.3 85666,85667 1wxiA 275 74.18 c.26.2.1 121400 1sb8A 352 74.70 c.2.1.2 105410 1tlfA 301 74.99 c.93.1.1 35687 2c31A 568 75.28 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1zejA 293 75.92 1c3oA 1073 76.54 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18562,31491,31681,31682,41526,41527 2dekA 265 77.86 c.90.1.1 131430 1p5dX 463 78.46 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1tufA 434 78.72 b.49.2.3,c.1.6.1 107335,107336 2i6tA 303 79.35 2yyyA 343 79.48 1kjqA 391 80.83 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1jg8A 347 80.96 c.67.1.1 62946 1cs1A 386 81.17 c.67.1.3 34399 1tkjA 284 81.19 c.56.5.4 119296 2pb2A 420 82.84 1iow 306 84.63 2imfA 203 84.67 2ahrA 259 85.56 a.100.1.10,c.2.1.6 126775,126776 1m6sA 347 85.75 c.67.1.1 78701 2ez2A 456 87.82 1hqcA 324 88.16 a.4.5.11,c.37.1.20 16127,32424 1r6dA 337 88.20 c.2.1.2 97148 1kssA 571 89.16 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1fsz 372 89.63