# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.62e-27 c.107.1.2 71342 1k20A 310 1.18e-24 c.107.1.1 68027 2eb0A 307 4.29e-23 2qb7A 397 4.45e-20 1wpnA 188 1.08e-15 c.107.1.1 114826 1q0rA 298 1.644 c.69.1.28 95508 2rgyA 290 2.841 1d2fA 390 4.182 c.67.1.3 34411 1jeoA 180 4.472 c.80.1.3 66611 2oq2A 261 4.866 2gb3A 409 5.102 c.67.1.1 134903 1jftA 340 5.167 a.35.1.5,c.93.1.1 66652,66653 3brsA 289 5.386 2driA 271 5.613 c.93.1.1 35637 2fepA 289 6.181 1m3sA 186 7.160 c.80.1.3 78573 3bblA 287 8.167 1rrmA 386 8.188 e.22.1.2 105081 2ioyA 283 8.332 3clkA 290 8.857 2dri 271 9.038 1j4aA 333 9.170 c.2.1.4,c.23.12.1 71502,71503 1zunA 325 9.411 c.26.2.2 125676 2i2wA 212 9.446 2o0rA 411 9.657 3d02A 303 9.786 2fyfA 398 10.52 1xi9A 406 10.92 c.67.1.1 115355 1pmmA 466 11.30 c.67.1.6 94901 2qvcA 313 11.45 1bw0A 416 11.68 c.67.1.1 34385 1tk9A 188 11.73 c.80.1.3 107082 3c3kA 285 11.75 2yvaA 196 13.15 2fn9A 290 13.58 1u08A 386 14.35 c.67.1.1 107543 2jejA 358 14.42 d.240.1.1,e.8.1.7 138284,138285 2bfdA 400 14.55 1eg5A 384 14.60 c.67.1.3 34429 1c7nA 399 15.10 c.67.1.3 34413 2dwcA 433 17.37 2fssA 365 17.62 2j6iA 364 17.97 2iksA 293 18.85 1kmkA 406 18.97 c.67.1.3 68696 2e18A 257 18.99 1j32A 388 19.10 c.67.1.1 77067 1p3wA 404 19.11 c.67.1.3 87752 1vimA 200 19.69 c.80.1.3 100758 3c6qA 311 20.05 2z61A 370 20.07 2rjoA 332 20.58 1v2dA 381 21.20 c.67.1.1 108281 3cq5A 369 22.06 2o20A 332 22.42 2zg5A 397 23.03 1wxiA 275 23.90 c.26.2.1 121400 2ez2A 456 24.06 3brqA 296 24.73 1dxy 333 25.27 2h0aA 276 25.73 1o97D 320 27.26 c.26.2.3,c.31.1.2 81233,81234 1va0A 239 27.74 c.90.1.1 119899 2z20A 432 28.78 1iirA 415 28.99 c.87.1.5 62453 2dplA 308 29.84 1jyeA 349 30.53 c.93.1.1 67455 2hdyA 440 31.06 2dgmA 466 31.16 c.67.1.6 131508 1wrbA 253 31.64 c.37.1.19 121192 1drwA 273 33.16 c.2.1.3,d.81.1.3 30057,39972 2h3hA 313 33.61 1mx3A 347 33.71 c.2.1.4,c.23.12.1 79638,79639 2r60A 499 33.99 1gdeA 389 34.14 c.67.1.1 60456 1xngA 268 34.23 c.26.2.1 122186 2z1yA 397 35.63 2iuyA 342 36.12 2pocA 367 36.97 2h78A 302 37.29 2yrrA 353 37.66 1kjqA 391 37.70 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2bw0A 329 37.85 b.46.1.1,c.65.1.1 129303,129304 1nriA 306 37.90 c.80.1.3 86123 2o8nA 265 38.29 1bvyF 191 39.93 c.23.5.1 31207 2dtvA 397 39.97 2v1pA 467 40.67 3c4vA 426 40.68 1k92A 455 40.88 c.26.2.1,d.210.1.1 68325,68326 1cbfA 285 41.20 c.90.1.1 35587 1p0kA 349 41.23 c.1.4.1 87648 3beoA 375 41.31 1qgoA 264 41.58 c.92.1.2 35596 1t2dA 322 41.92 c.2.1.5,d.162.1.1 99084,99085 1uc8A 280 42.54 c.30.1.6,d.142.1.7 99165,99166 2cz9A 350 43.43 2qenA 350 44.25 1w85B 324 44.71 c.36.1.7,c.48.1.2 114336,114337 2p1zA 180 45.50 8abpA 306 45.56 c.93.1.1 35647 2cb0A 333 47.39 2fvyA 309 47.41 c.93.1.1 134227 2gekA 406 47.67 2zc0A 407 47.81 1wwkA 307 48.20 1sc6A 404 49.13 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2axqA 467 49.31 1m32A 366 49.32 c.67.1.3 78508 1jf9A 408 50.14 c.67.1.3 62931 1n2eA 300 50.35 c.26.1.4 85268 1dbqA 289 50.40 c.93.1.1 35666 1moq 368 52.86 3dfuA 232 53.19 1j1nA 492 53.52 c.94.1.1 83978 2dy0A 190 53.66 1m7yA 435 54.15 c.67.1.4 78761 1umdA 367 54.20 c.36.1.11 99599 1v93A 296 54.56 c.1.23.1 100532 1ni5A 433 56.19 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2px6A 316 56.20 1o4sA 389 56.52 c.67.1.1 86620 1o69A 394 56.54 c.67.1.4 92560 1qopA 268 57.69 c.1.2.4 28570 1xdwA 331 57.72 2p4qA 497 57.84 2q28A 564 58.02 1w3iA 293 58.22 c.1.10.1 109152 1gy8A 397 59.14 c.2.1.2 83376 3cs3A 277 60.13 1bykA 255 60.28 c.93.1.1 35706 2ahrA 259 60.93 a.100.1.10,c.2.1.6 126775,126776 2dy3A 361 61.45 1h1nA 305 62.90 c.1.8.3 70855 2r85A 334 63.46 1wstA 417 63.74 c.67.1.1 121244 1qj4A 257 64.39 c.69.1.20 34796 2dr1A 386 65.51 2eggA 297 65.78 3cvjA 243 66.62 2df8A 325 67.22 1ynuA 473 68.31 c.67.1.4 123762 1b5pA 385 69.85 c.67.1.1 90403 1k07A 263 69.89 d.157.1.1 77218 1mtzA 293 69.94 c.69.1.7 79467 2p7iA 250 70.49 2douA 376 71.50 1vpdA 299 71.72 a.100.1.1,c.2.1.6 113951,113952 2gaiA 633 72.73 2oatA 439 72.91 c.67.1.4 34452 3borA 237 72.96 1sur 215 73.99 2z83A 459 76.02 1iukA 140 76.67 c.2.1.8 83712 3cwqA 209 76.79 1gpjA 404 77.00 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1wd7A 261 77.91 c.113.1.1 114526 2zhgA 154 78.46 1z7mA 344 78.96 d.104.1.1 124632 1yaaA 412 79.83 c.67.1.1 34280 1cvlA 319 80.55 c.69.1.18 34786 1jx6A 342 80.93 c.93.1.1 67406 1x9iA 302 81.88 c.80.1.1 114997 3bilA 348 82.42 2g50A 530 83.54 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2qiwA 255 84.11 2oqxA 467 84.62 1i36A 264 85.26 a.100.1.8,c.2.1.6 71108,71109 1svvA 359 86.32 c.67.1.1 106054 1gca 309 87.90