# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.56e-24 c.107.1.2 71342 1k20A 310 1.83e-23 c.107.1.1 68027 2eb0A 307 3.32e-21 2qb7A 397 6.28e-18 1wpnA 188 4.45e-15 c.107.1.1 114826 2jejA 358 1.248 d.240.1.1,e.8.1.7 138284,138285 2rgyA 290 1.631 1d2fA 390 2.118 c.67.1.3 34411 2oq2A 261 4.174 2driA 271 4.789 c.93.1.1 35637 3brsA 289 4.956 1zunA 325 5.080 c.26.2.2 125676 2gb3A 409 5.473 c.67.1.1 134903 1rrmA 386 5.935 e.22.1.2 105081 2o0rA 411 6.096 2fepA 289 6.604 1xi9A 406 7.037 c.67.1.1 115355 1jftA 340 8.064 a.35.1.5,c.93.1.1 66652,66653 1eg5A 384 9.010 c.67.1.3 34429 3bblA 287 9.236 1wxiA 275 9.272 c.26.2.1 121400 1bykA 255 9.788 c.93.1.1 35706 2fn9A 290 9.828 1q0rA 298 10.18 c.69.1.28 95508 1c7nA 399 10.19 c.67.1.3 34413 2dtvA 397 10.65 2dri 271 11.10 2z9wA 392 11.40 2ioyA 283 12.16 1bw0A 416 12.35 c.67.1.1 34385 1v2dA 381 13.52 c.67.1.1 108281 3cq5A 369 14.27 3brqA 296 15.38 8abpA 306 15.65 c.93.1.1 35647 8abp 306 15.67 2zg5A 397 18.61 2bfdA 400 18.80 2qvcA 313 19.22 2o20A 332 19.37 1j32A 388 19.52 c.67.1.1 77067 1m7yA 435 19.75 c.67.1.4 78761 1surA 215 19.79 c.26.2.2 31620 1u08A 386 20.40 c.67.1.1 107543 1pmmA 466 20.54 c.67.1.6 94901 1kmkA 406 21.41 c.67.1.3 68696 2iksA 293 22.81 2qm8A 337 23.12 3cwqA 209 23.30 2j6iA 364 23.53 2dplA 308 23.73 3dfuA 232 23.82 2fssA 365 24.64 2r60A 499 24.68 1j4aA 333 25.53 c.2.1.4,c.23.12.1 71502,71503 2z1yA 397 25.92 2z61A 370 25.92 3clkA 290 26.52 1jyeA 349 26.59 c.93.1.1 67455 1svvA 359 26.62 c.67.1.1 106054 2g50A 530 27.77 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2pv7A 298 28.22 3d02A 303 28.44 2fyfA 398 28.64 2yrrA 353 28.74 2pocA 367 29.15 1yaaA 412 29.29 c.67.1.1 34280 1qopA 268 30.15 c.1.2.4 28570 1ynuA 473 30.20 c.67.1.4 123762 1vimA 200 30.38 c.80.1.3 100758 1vpdA 299 32.31 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 33.49 1gdeA 389 34.07 c.67.1.1 60456 1p3wA 404 34.92 c.67.1.3 87752 2rjoA 332 35.25 1o4sA 389 35.37 c.67.1.1 86620 3cs3A 277 35.87 1wstA 417 36.75 c.67.1.1 121244 1wcwA 261 37.00 1m3sA 186 37.54 c.80.1.3 78573 1mx3A 347 37.66 c.2.1.4,c.23.12.1 79638,79639 2zc0A 407 38.34 2g1uA 155 38.45 2yvaA 196 39.87 1jeoA 180 39.92 c.80.1.3 66611 2z20A 432 40.37 1dxy 333 40.61 2o1sA 621 40.63 3c6qA 311 40.79 1wd7A 261 40.92 c.113.1.1 114526 1ez4A 318 41.69 c.2.1.5,d.162.1.1 64917,64918 2e18A 257 43.46 1xngA 268 44.44 c.26.2.1 122186 1va0A 239 44.73 c.90.1.1 119899 2vptA 215 47.45 2h3hA 313 47.46 1zp4A 304 48.20 1xdwA 331 48.38 1moq 368 48.38 1vpvA 300 48.71 c.119.1.1 113975 1e5kA 201 49.08 c.68.1.8 34578 1m6sA 347 49.56 c.67.1.1 78701 2pn1A 331 50.48 1lehA 364 50.71 c.2.1.7,c.58.1.1 30268,33916 2qiwA 255 51.88 3c3kA 285 51.92 1jx4A 352 51.97 d.240.1.1,e.8.1.7 90378,90379 1wrbA 253 52.41 c.37.1.19 121192 1wwkA 307 52.41 2pezA 179 52.59 2cb0A 333 53.33 2g5cA 281 53.51 a.100.1.12,c.2.1.6 134646,134647 1jf9A 408 53.99 c.67.1.3 62931 1anf 370 56.28 1udcA 338 56.44 c.2.1.2 29785 1tk9A 188 56.46 c.80.1.3 107082 1k92A 455 56.50 c.26.2.1,d.210.1.1 68325,68326 2hdyA 440 57.08 1dbqA 289 58.05 c.93.1.1 35666 2dgmA 466 59.01 c.67.1.6 131508 1rzuA 485 59.29 c.87.1.8 105140 2dr1A 386 59.77 2douA 376 60.26 1sur 215 61.61 2zhgA 154 61.92 2ahrA 259 62.99 a.100.1.10,c.2.1.6 126775,126776 1qgoA 264 63.01 c.92.1.2 35596 2hcrA 326 64.24 3caiA 406 64.59 3beoA 375 64.69 2e8bA 201 64.75 1j1nA 492 64.98 c.94.1.1 83978 2pibA 216 65.41 1dxyA 333 66.28 c.2.1.4,c.23.12.1 30094,31354 1korA 400 66.43 c.26.2.1,d.210.1.1 72824,72825 2ax4A 198 67.66 1k07A 263 67.74 d.157.1.1 77218 2qxfA 482 67.81 2csuA 457 67.87 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3borA 237 68.68 2c1xA 456 69.01 1wy5A 317 69.12 c.26.2.5,d.229.1.1 121428,121429 1tqhA 247 69.79 c.69.1.29 107225 1ixkA 315 70.53 c.66.1.38 90716 2v1pA 467 70.55 1moqA 368 71.14 c.80.1.1 35302 1ybhA 590 71.33 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1b5pA 385 71.43 c.67.1.1 90403 2gekA 406 72.99 1lc5A 364 73.59 c.67.1.1 73827 1oj7A 408 73.76 e.22.1.2 103971 1jbwA 428 74.52 c.59.1.2,c.72.2.2 62860,62861 1v93A 296 74.71 c.1.23.1 100532 1t3iA 420 75.86 c.67.1.3 106354 1m32A 366 76.92 c.67.1.3 78508 1yacA 208 77.52 c.33.1.3 31757 2amlA 373 77.65 1cbfA 285 78.57 c.90.1.1 35587 2vgiA 528 78.84 2q8pA 260 81.96 2fvyA 309 82.34 c.93.1.1 134227 2cz9A 350 83.19 2vggA 528 83.62 2ejaA 338 83.65 2dt8A 280 83.71 1pq4A 291 84.87 c.92.2.2 94995 2f7tA 227 84.99 1uj2A 252 86.10 c.37.1.6 99452 1ars 396 86.30 4uagA 437 86.55 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1w85B 324 87.33 c.36.1.7,c.48.1.2 114336,114337 1v72A 356 89.98 c.67.1.1 119860 2vgfA 528 90.00