# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 6.11e-25 c.107.1.2 71342 1k20A 310 7.03e-23 c.107.1.1 68027 2eb0A 307 6.75e-21 2qb7A 397 5.96e-19 1wpnA 188 6.39e-15 c.107.1.1 114826 1q0rA 298 1.229 c.69.1.28 95508 2rgyA 290 2.457 2driA 271 3.269 c.93.1.1 35637 1rrmA 386 3.823 e.22.1.2 105081 2fepA 289 4.315 3brsA 289 5.006 2ioyA 283 5.081 2qvcA 313 5.374 1d2fA 390 6.182 c.67.1.3 34411 2o0rA 411 6.401 2dri 271 6.495 1jftA 340 6.682 a.35.1.5,c.93.1.1 66652,66653 2yvaA 196 7.016 2fn9A 290 7.037 8abpA 306 7.625 c.93.1.1 35647 1j32A 388 8.964 c.67.1.1 77067 1c7nA 399 9.586 c.67.1.3 34413 3d02A 303 9.775 1tk9A 188 9.834 c.80.1.3 107082 2oq2A 261 9.883 2rjoA 332 10.02 1xi9A 406 10.20 c.67.1.1 115355 1va0A 239 10.52 c.90.1.1 119899 2gb3A 409 10.63 c.67.1.1 134903 1jyeA 349 10.79 c.93.1.1 67455 2z61A 370 10.93 2i2wA 212 11.37 1v2dA 381 11.83 c.67.1.1 108281 1eg5A 384 12.09 c.67.1.3 34429 1jeoA 180 12.77 c.80.1.3 66611 1zunA 325 13.32 c.26.2.2 125676 3bblA 287 13.58 1wxiA 275 15.37 c.26.2.1 121400 8abp 306 15.39 2pocA 367 15.48 2zg5A 397 15.95 2jejA 358 16.51 d.240.1.1,e.8.1.7 138284,138285 1k07A 263 17.44 d.157.1.1 77218 3c3kA 285 17.67 2h3hA 313 17.75 1pmmA 466 17.81 c.67.1.6 94901 2yrrA 353 17.96 3c6qA 311 18.95 2cz9A 350 19.30 2fyfA 398 19.56 1bykA 255 21.87 c.93.1.1 35706 2j6iA 364 22.00 1m3sA 186 22.14 c.80.1.3 78573 1j4aA 333 22.52 c.2.1.4,c.23.12.1 71502,71503 2hdyA 440 23.33 2z20A 432 23.43 2iksA 293 23.60 2h0aA 276 23.84 1bw0A 416 24.33 c.67.1.1 34385 1p3wA 404 25.03 c.67.1.3 87752 2r60A 499 25.70 1w23A 360 26.50 c.67.1.4 114088 2bfdA 400 27.77 1gca 309 27.85 2h78A 302 28.87 2g50A 530 29.32 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2dtvA 397 29.33 1w85B 324 29.53 c.36.1.7,c.48.1.2 114336,114337 1vp8A 201 29.54 c.49.1.2 113947 3beoA 375 29.99 2fvyA 309 30.18 c.93.1.1 134227 1qopA 268 30.80 c.1.2.4 28570 3cq5A 369 31.02 2fssA 365 31.44 1cbfA 285 32.83 c.90.1.1 35587 1wrbA 253 34.00 c.37.1.19 121192 2o20A 332 34.18 1vimA 200 34.32 c.80.1.3 100758 3borA 237 34.48 1gdeA 389 34.79 c.67.1.1 60456 2z1yA 397 34.96 2v1pA 467 35.07 1xqwA 293 35.32 3brqA 296 36.04 1kqpA 271 38.09 c.26.2.1 72883 2px6A 316 38.46 1yaaA 412 39.13 c.67.1.1 34280 1mtzA 293 39.18 c.69.1.7 79467 3cs3A 277 39.25 1u08A 386 40.06 c.67.1.1 107543 1oj7A 408 40.29 e.22.1.2 103971 1v4vA 376 40.66 c.87.1.3 100313 2dwcA 433 42.78 2qm8A 337 44.09 2bw0A 329 44.31 b.46.1.1,c.65.1.1 129303,129304 2rhwA 283 45.43 2p4qA 497 45.50 1wwkA 307 47.57 2zc0A 407 48.04 1umdB 324 48.41 c.36.1.7,c.48.1.2 99600,99601 2gekA 406 50.17 1m32A 366 50.26 c.67.1.3 78508 1jxhA 288 50.75 c.72.1.2 67415 3cwqA 209 51.75 1gy8A 397 51.99 c.2.1.2 83376 1qgoA 264 52.38 c.92.1.2 35596 3dfuA 232 53.07 2p1zA 180 53.09 2ejaA 338 54.23 1xngA 268 54.26 c.26.2.1 122186 1o4sA 389 55.08 c.67.1.1 86620 1dbqA 289 55.17 c.93.1.1 35666 1qj4A 257 55.24 c.69.1.20 34796 2q28A 564 55.84 1kmkA 406 55.84 c.67.1.3 68696 3bcvA 240 56.04 2iuyA 342 56.18 1udcA 338 56.87 c.2.1.2 29785 1x9iA 302 57.73 c.80.1.1 114997 1o69A 394 58.07 c.67.1.4 92560 3bf7A 255 58.36 1mx3A 347 58.40 c.2.1.4,c.23.12.1 79638,79639 1w3iA 293 59.85 c.1.10.1 109152 1womA 271 60.97 1vpdA 299 61.27 a.100.1.1,c.2.1.6 113951,113952 1wstA 417 62.61 c.67.1.1 121244 1uk8A 282 62.79 c.69.1.10 107907 2r85A 334 63.31 2p5yA 311 65.24 1ek6A 348 65.53 c.2.1.2 29800 2f4nA 273 65.54 1ez4A 318 67.59 c.2.1.5,d.162.1.1 64917,64918 1lc5A 364 67.69 c.67.1.1 73827 2dy3A 361 68.00 2qiwA 255 68.66 2o8nA 265 68.79 1umdA 367 69.35 c.36.1.11 99599 1v93A 296 70.22 c.1.23.1 100532 2ez2A 456 71.91 1jf9A 408 72.08 c.67.1.3 62931 1kjqA 391 72.23 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1m7yA 435 73.38 c.67.1.4 78761 1b5pA 385 73.53 c.67.1.1 90403 2douA 376 73.73 2oqxA 467 73.96 1vicA 262 76.15 c.68.1.13 100756 2o1sA 621 76.50 1y37A 304 76.78 2r2nA 425 77.00 1xklA 273 77.05 c.69.1.20 115410 1uc8A 280 77.06 c.30.1.6,d.142.1.7 99165,99166 1ynuA 473 77.21 c.67.1.4 123762 1wcwA 261 77.54 2pezA 179 77.89 2vgiA 528 78.70 2gqwA 408 79.55 2vgbA 528 79.56 1p0kA 349 79.70 c.1.4.1 87648 1zp4A 304 80.17 1t2dA 322 80.28 c.2.1.5,d.162.1.1 99084,99085 1bg6A 359 80.71 a.100.1.5,c.2.1.6 18810,30214 1ars 396 80.78 1wd7A 261 81.11 c.113.1.1 114526 1svvA 359 81.23 c.67.1.1 106054 1iirA 415 81.32 c.87.1.5 62453 2qvbA 297 83.06 2vgfA 528 83.13 1t3iA 420 84.01 c.67.1.3 106354 1o97D 320 84.10 c.26.2.3,c.31.1.2 81233,81234 1uu1A 335 84.93 c.67.1.1 99993 3caiA 406 86.41 2ipxA 233 86.69 1pjaA 302 88.32 c.69.1.13 94758 1gudA 288 88.54 c.93.1.1 83326 2vggA 528 88.69