# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 8.76e-28 c.107.1.2 71342 1k20A 310 3.37e-24 c.107.1.1 68027 2eb0A 307 1.49e-22 2qb7A 397 4.15e-20 1wpnA 188 1.55e-16 c.107.1.1 114826 2rgyA 290 3.097 2i2wA 212 3.377 1rrmA 386 4.326 e.22.1.2 105081 2fepA 289 5.443 8abpA 306 5.711 c.93.1.1 35647 1v4vA 376 5.769 c.87.1.3 100313 2o0rA 411 5.915 3brsA 289 6.332 2oq2A 261 6.406 1m7yA 435 7.099 c.67.1.4 78761 2z1yA 397 7.796 8abp 306 7.894 2amlA 373 8.688 2dtvA 397 8.693 2yvaA 196 8.937 1eg5A 384 9.080 c.67.1.3 34429 1ars 396 9.352 2fyfA 398 10.04 3beoA 375 10.13 1vmeA 410 10.59 c.23.5.1,d.157.1.3 108893,108894 2zhgA 154 11.22 2driA 271 11.26 c.93.1.1 35637 1d2fA 390 11.51 c.67.1.3 34411 3dfuA 232 11.81 1tk9A 188 12.16 c.80.1.3 107082 1kmkA 406 12.74 c.67.1.3 68696 1pmmA 466 13.21 c.67.1.6 94901 2fn9A 290 13.52 2pocA 367 13.80 2zc0A 407 15.19 1tqhA 247 16.18 c.69.1.29 107225 1v2dA 381 16.90 c.67.1.1 108281 2dri 271 17.76 1jeoA 180 20.13 c.80.1.3 66611 2qvcA 313 20.19 2gekA 406 20.85 1bw0A 416 20.87 c.67.1.1 34385 2c81A 418 21.23 2o8nA 265 22.23 1nriA 306 25.82 c.80.1.3 86123 1o4sA 389 26.78 c.67.1.1 86620 1j32A 388 27.35 c.67.1.1 77067 2zg5A 397 27.51 2ioyA 283 27.69 2qu7A 288 27.76 3berA 249 27.97 3borA 237 28.79 1p0kA 349 28.88 c.1.4.1 87648 2e18A 257 28.89 1u08A 386 29.06 c.67.1.1 107543 1f0kA 364 29.08 c.87.1.2 35465 1vimA 200 29.20 c.80.1.3 100758 1va0A 239 29.95 c.90.1.1 119899 1wxiA 275 30.85 c.26.2.1 121400 2pljA 419 30.97 1js3A 486 31.40 c.67.1.6 67215 2rjoA 332 31.52 1wcwA 261 31.78 2jejA 358 31.98 d.240.1.1,e.8.1.7 138284,138285 2g50A 530 32.07 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 3cvjA 243 32.54 2yrrA 353 32.64 1v93A 296 34.54 c.1.23.1 100532 1xi9A 406 35.87 c.67.1.1 115355 2z61A 370 36.37 1o69A 394 37.35 c.67.1.4 92560 3d02A 303 37.91 1jftA 340 39.59 a.35.1.5,c.93.1.1 66652,66653 1g5hA 454 39.64 c.51.1.1,d.104.1.1 60270,60271 2iksA 293 39.94 3bblA 287 41.58 1nt2A 210 42.49 c.66.1.3 86149 1zunA 325 43.33 c.26.2.2 125676 1gca 309 43.34 1oj7A 408 43.65 e.22.1.2 103971 1x9iA 302 44.00 c.80.1.1 114997 1yaaA 412 44.79 c.67.1.1 34280 2epjA 434 46.18 2csuA 457 46.20 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2ekcA 262 46.44 3cq5A 369 47.37 2hf9A 226 47.69 2e7jA 371 48.15 2cz9A 350 48.25 1w23A 360 48.25 c.67.1.4 114088 3cs3A 277 49.09 1j4aA 333 49.51 c.2.1.4,c.23.12.1 71502,71503 2h3hA 313 49.72 2pl3A 236 50.87 1m3sA 186 51.97 c.80.1.3 78573 2p1zA 180 53.19 1vjoA 393 53.22 c.67.1.3 100827 1gdeA 389 53.32 c.67.1.1 60456 1bykA 255 54.16 c.93.1.1 35706 1j1nA 492 54.23 c.94.1.1 83978 1azwA 313 55.02 c.69.1.7 34658 1wy5A 317 56.73 c.26.2.5,d.229.1.1 121428,121429 2dr1A 386 56.82 2cb0A 333 57.43 2o1eA 312 58.14 1vecA 206 58.95 c.37.1.19 100575 3c6qA 311 59.73 1rrvA 416 60.18 c.87.1.5 105083 2bkwA 385 61.04 c.67.1.3 128714 1o97D 320 61.36 c.26.2.3,c.31.1.2 81233,81234 3c4vA 426 61.44 1moq 368 61.79 2dt9A 167 61.81 1vfgA 390 63.30 a.173.1.1,d.218.1.4 108570,108571 2vgiA 528 63.73 1r1dA 247 63.77 c.69.1.29 96813 2a3nA 355 66.06 2fvyA 309 67.14 c.93.1.1 134227 1u5kA 244 68.34 b.40.4.13,g.45.1.2 113038,113039 1vefA 395 68.84 c.67.1.4 120018 2e7xA 150 68.98 2vggA 528 69.15 1yqgA 263 70.20 2jisA 515 72.47 1eluA 390 72.97 c.67.1.3 34434 1wrbA 253 73.18 c.37.1.19 121192 2dy3A 361 73.33 1hyhA 309 74.36 c.2.1.5,d.162.1.1 30150,42117 2cy8A 453 75.31 2vgfA 528 75.58 2f7tA 227 76.28 2px6A 316 76.68 1k07A 263 77.27 d.157.1.1 77218 1f5nA 592 78.33 a.114.1.1,c.37.1.8 19077,32152 1mv8A 436 78.64 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1o2dA 371 78.70 e.22.1.2 86591 1ua4A 455 78.94 c.72.1.3 99128 1qdeA 224 79.23 c.37.1.19 32410 2v7bA 529 79.41 3d0rA 398 79.47 1fmtA 314 79.52 b.46.1.1,c.65.1.1 25758,34174 2ay1A 394 79.74 c.67.1.1 34357 1iugA 352 79.92 c.67.1.3 90699 2o1sA 621 80.10 1wd7A 261 80.75 c.113.1.1 114526 1jtvA 327 82.58 c.2.1.2 84230 2gqwA 408 83.14 1d6mA 653 84.05 e.10.1.1 43248 1a8qA 274 84.48 c.69.1.12 34702 2r60A 499 85.91 1ytvA 366 85.92 c.94.1.1 124016 2vgbA 528 85.96 1p3wA 404 86.85 c.67.1.3 87752 2o20A 332 87.27 1gpjA 404 87.36 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1q0rA 298 87.63 c.69.1.28 95508 2qs9A 194 87.66 1ajsA 412 87.71 c.67.1.1 34276 2d59A 144 88.31 c.2.1.8 131266