# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.35e-25 c.107.1.2 71342 1k20A 310 2.16e-23 c.107.1.1 68027 2eb0A 307 6.57e-21 2qb7A 397 1.88e-18 1wpnA 188 2.88e-14 c.107.1.1 114826 1x6vA 630 1.495 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2jejA 358 2.071 d.240.1.1,e.8.1.7 138284,138285 1q0rA 298 2.446 c.69.1.28 95508 1eg5A 384 2.587 c.67.1.3 34429 2i2wA 212 5.532 1xi9A 406 5.949 c.67.1.1 115355 1rrmA 386 7.363 e.22.1.2 105081 1bw0A 416 7.770 c.67.1.1 34385 1j4aA 333 8.119 c.2.1.4,c.23.12.1 71502,71503 2gb3A 409 8.305 c.67.1.1 134903 2e18A 257 8.698 2bfdA 400 9.779 2zg5A 397 9.945 2oq2A 261 10.26 3brsA 289 10.30 2v1pA 467 10.39 2rgyA 290 10.44 2bw0A 329 11.77 b.46.1.1,c.65.1.1 129303,129304 2driA 271 12.26 c.93.1.1 35637 2vgbA 528 12.54 2fepA 289 13.35 1v4vA 376 13.66 c.87.1.3 100313 1v2dA 381 14.15 c.67.1.1 108281 2cb0A 333 14.55 1jftA 340 14.76 a.35.1.5,c.93.1.1 66652,66653 1m3sA 186 15.04 c.80.1.3 78573 2hdyA 440 15.63 2fssA 365 15.93 2dr1A 386 16.56 3cwqA 209 16.82 2yvaA 196 17.20 3d02A 303 17.78 1k07A 263 17.83 d.157.1.1 77218 1t9bA 677 17.95 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1ni5A 433 18.10 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2dplA 308 18.21 2o0rA 411 18.30 3c6qA 311 18.32 1zunA 325 18.33 c.26.2.2 125676 2z1yA 397 18.81 1d2fA 390 19.13 c.67.1.3 34411 2fn9A 290 19.16 2v7bA 529 19.93 2dtvA 397 20.83 1jeoA 180 21.25 c.80.1.3 66611 2ioyA 283 21.49 1j32A 388 21.72 c.67.1.1 77067 1oywA 523 21.79 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1tk9A 188 22.02 c.80.1.3 107082 1jyeA 349 22.48 c.93.1.1 67455 1ozhA 566 22.91 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2qvcA 313 23.03 1uc8A 280 23.71 c.30.1.6,d.142.1.7 99165,99166 2z20A 432 24.96 3dfuA 232 25.19 2yrxA 451 25.55 2o1eA 312 26.11 1vl2A 421 26.24 c.26.2.1,d.210.1.1 108708,108709 2j6iA 364 27.10 2zc0A 407 27.14 1vimA 200 27.70 c.80.1.3 100758 2rjoA 332 27.70 2dri 271 29.35 1iugA 352 29.40 c.67.1.3 90699 1wxiA 275 29.59 c.26.2.1 121400 1m32A 366 30.85 c.67.1.3 78508 7aatA 401 31.63 c.67.1.1 34250 1pmmA 466 31.82 c.67.1.6 94901 1y5iA 1246 32.73 b.52.2.2,c.81.1.1 122639,122640 2r2nA 425 33.10 1kjqA 391 34.39 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 3brqA 296 35.60 1p3dA 475 36.55 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2douA 376 36.72 2fuvA 549 36.89 2gekA 406 38.52 2fyfA 398 39.22 2df8A 325 39.63 1u08A 386 39.84 c.67.1.1 107543 1ars 396 40.37 1ez4A 318 40.82 c.2.1.5,d.162.1.1 64917,64918 3bijA 285 41.28 1xdwA 331 43.22 2dgmA 466 43.92 c.67.1.6 131508 1vp8A 201 44.44 c.49.1.2 113947 1fmtA 314 44.93 b.46.1.1,c.65.1.1 25758,34174 2h3hA 313 45.09 1dxy 333 46.73 2blnA 305 47.23 b.46.1.1,c.65.1.1 128734,128735 1f0kA 364 47.69 c.87.1.2 35465 2j0wA 449 47.91 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2yrrA 353 48.67 2aaaA 484 49.18 b.71.1.1,c.1.8.1 27777,28764 1qj4A 257 49.41 c.69.1.20 34796 3cq5A 369 49.77 2bkwA 385 49.99 c.67.1.3 128714 1z7mA 344 51.06 d.104.1.1 124632 1pwhA 327 51.38 c.79.1.1 95224 3db2A 354 51.79 1wcwA 261 51.85 2iksA 293 52.15 2qm8A 337 52.49 2fvyA 309 52.78 c.93.1.1 134227 1wwkA 307 53.40 1mx3A 347 53.62 c.2.1.4,c.23.12.1 79638,79639 1vfsA 386 54.05 b.49.2.2,c.1.6.1 108584,108585 2g0wA 296 55.91 c.1.15.4 134503 1x9iA 302 56.27 c.80.1.1 114997 1o97D 320 56.32 c.26.2.3,c.31.1.2 81233,81234 2uz1A 563 57.18 1m7yA 435 57.59 c.67.1.4 78761 1mtzA 293 57.98 c.69.1.7 79467 1qopA 268 58.39 c.1.2.4 28570 2d1sA 548 58.57 8abpA 306 58.73 c.93.1.1 35647 1c7nA 399 58.90 c.67.1.3 34413 1v25A 541 59.02 e.23.1.1 108275 1q6zA 528 60.07 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2ixdA 242 63.45 1surA 215 63.79 c.26.2.2 31620 2pocA 367 64.70 1qmgA 524 65.81 a.100.1.2,c.2.1.6 18785,30182 2iuyA 342 66.48 1pjaA 302 66.69 c.69.1.13 94758 2h2zA 306 67.06 1p0kA 349 67.11 c.1.4.1 87648 8abp 306 67.56 1uok 558 67.72 3cs3A 277 68.30 2qiwA 255 69.73 3bk2A 562 70.29 2f4nA 273 71.58 1jbwA 428 71.72 c.59.1.2,c.72.2.2 62860,62861 2h78A 302 71.75 2vgiA 528 72.07 1w85B 324 72.37 c.36.1.7,c.48.1.2 114336,114337 1gpjA 404 72.58 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1yaaA 412 73.18 c.67.1.1 34280 2c42A 1231 73.74 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1uteA 313 74.23 d.159.1.1 42078 1t2dA 322 74.80 c.2.1.5,d.162.1.1 99084,99085 2z8fA 412 75.13 2rebA 352 75.57 c.37.1.11,d.48.1.1 32282,38767 1o4sA 389 77.22 c.67.1.1 86620 2ipxA 233 77.69 1uk8A 282 77.74 c.69.1.10 107907 1xqwA 293 78.05 1k92A 455 78.62 c.26.2.1,d.210.1.1 68325,68326 2ze0A 555 78.93 2cunA 410 79.67 1bykA 255 79.78 c.93.1.1 35706 2gqwA 408 79.83 1vzwA 244 80.61 c.1.2.1 120553 2ez9A 603 80.68 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ygyA 529 81.49 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 3cvjA 243 83.24 2gaiA 633 84.37 1n7hA 381 84.79 c.2.1.2 80250 1ys4A 354 85.24 3beoA 375 85.71 1wvgA 359 86.31 c.2.1.2 121339 1wyuA 438 87.51 c.67.1.7 121452 2dwcA 433 88.18 1fmjA 351 88.60 c.37.1.5 59879 2ejaA 338 89.26