# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.66e-27 c.107.1.2 71342 1k20A 310 1.92e-25 c.107.1.1 68027 2eb0A 307 1.56e-23 2qb7A 397 8.55e-21 1wpnA 188 2.36e-16 c.107.1.1 114826 2oq2A 261 0.8658 2jejA 358 1.666 d.240.1.1,e.8.1.7 138284,138285 2rgyA 290 1.772 1d2fA 390 2.175 c.67.1.3 34411 2driA 271 2.701 c.93.1.1 35637 2o0rA 411 3.182 3brsA 289 3.399 1rrmA 386 3.533 e.22.1.2 105081 2fepA 289 4.695 2z61A 370 6.802 2dri 271 7.251 2gb3A 409 7.343 c.67.1.1 134903 1jftA 340 8.057 a.35.1.5,c.93.1.1 66652,66653 3cq5A 369 8.347 1c7nA 399 8.397 c.67.1.3 34413 2ioyA 283 9.014 1xi9A 406 9.450 c.67.1.1 115355 1v2dA 381 9.600 c.67.1.1 108281 1yaaA 412 10.01 c.67.1.1 34280 3bblA 287 10.39 1bw0A 416 10.75 c.67.1.1 34385 1u08A 386 10.93 c.67.1.1 107543 1jyeA 349 10.94 c.93.1.1 67455 1zunA 325 11.10 c.26.2.2 125676 1eg5A 384 12.01 c.67.1.3 34429 2fn9A 290 12.09 2zg5A 397 12.23 2fssA 365 12.65 2qvcA 313 13.75 2fyfA 398 14.72 1q0rA 298 14.74 c.69.1.28 95508 1pmmA 466 15.06 c.67.1.6 94901 2j6iA 364 15.49 2z1yA 397 15.78 1j32A 388 16.35 c.67.1.1 77067 3d02A 303 17.05 1m3sA 186 17.37 c.80.1.3 78573 1bykA 255 18.12 c.93.1.1 35706 3cwqA 209 18.88 2hdyA 440 19.29 1oj7A 408 19.56 e.22.1.2 103971 2g50A 530 20.48 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 3brqA 296 20.87 2zc0A 407 21.52 1mx3A 347 22.76 c.2.1.4,c.23.12.1 79638,79639 1kmkA 406 22.92 c.67.1.3 68696 2iksA 293 23.06 3c6qA 311 23.34 1j4aA 333 24.42 c.2.1.4,c.23.12.1 71502,71503 2yvaA 196 24.47 3clkA 290 25.12 2dtvA 397 25.97 1wxiA 275 26.06 c.26.2.1 121400 1jeoA 180 26.47 c.80.1.3 66611 2z20A 432 26.87 2qxfA 482 27.08 2o20A 332 27.69 1gdeA 389 28.17 c.67.1.1 60456 1vimA 200 29.01 c.80.1.3 100758 1m32A 366 29.27 c.67.1.3 78508 2h0aA 276 29.95 2rjoA 332 30.20 1wrbA 253 30.46 c.37.1.19 121192 1gpjA 404 30.99 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 8abpA 306 31.29 c.93.1.1 35647 1p3wA 404 31.77 c.67.1.3 87752 1w85B 324 33.87 c.36.1.7,c.48.1.2 114336,114337 1wstA 417 34.00 c.67.1.1 121244 1cvlA 319 34.03 c.69.1.18 34786 1wwkA 307 34.07 2bfdA 400 34.69 3cs3A 277 35.05 1tk9A 188 35.30 c.80.1.3 107082 1dxy 333 35.65 2yrrA 353 36.03 3c3kA 285 37.96 3borA 237 38.22 2qm8A 337 41.38 2h3hA 313 41.50 2o1eA 312 41.80 2o1sA 621 42.00 1qopA 268 42.07 c.1.2.4 28570 2dwcA 433 42.26 2bw0A 329 42.53 b.46.1.1,c.65.1.1 129303,129304 2r60A 499 42.68 1ars 396 43.12 2cz9A 350 44.12 1qj4A 257 44.14 c.69.1.20 34796 2ipxA 233 44.20 1iirA 415 44.53 c.87.1.5 62453 1j1nA 492 44.79 c.94.1.1 83978 2r85A 334 46.66 2i3dA 249 46.82 1surA 215 47.01 c.26.2.2 31620 1qdeA 224 48.03 c.37.1.19 32410 1korA 400 48.62 c.26.2.1,d.210.1.1 72824,72825 1w23A 360 49.06 c.67.1.4 114088 1o97D 320 50.67 c.26.2.3,c.31.1.2 81233,81234 1anf 370 50.71 2v1pA 467 51.36 2e18A 257 52.94 2dr1A 386 53.49 2f4nA 273 55.06 2oatA 439 55.62 c.67.1.4 34452 2p7iA 250 55.66 2fvyA 309 55.67 c.93.1.1 134227 2i2wA 212 55.88 2vgiA 528 56.74 1svvA 359 57.00 c.67.1.1 106054 1o4sA 389 59.12 c.67.1.1 86620 2gekA 406 59.13 1k92A 455 60.28 c.26.2.1,d.210.1.1 68325,68326 2px6A 316 60.86 2dplA 308 61.14 2h78A 302 62.19 2douA 376 64.54 2zhgA 154 64.85 2c1xA 456 66.46 1qgoA 264 66.67 c.92.1.2 35596 2vggA 528 67.33 1w36C 1122 67.67 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1vp8A 201 67.86 c.49.1.2 113947 2h2zA 306 67.91 1pjaA 302 68.00 c.69.1.13 94758 1vefA 395 68.08 c.67.1.4 120018 1xngA 268 68.58 c.26.2.1 122186 1lc5A 364 69.09 c.67.1.1 73827 1w7lA 422 69.43 c.67.1.1 109226 1umdB 324 70.79 c.36.1.7,c.48.1.2 99600,99601 3caiA 406 70.88 2r2nA 425 71.50 1jf9A 408 72.17 c.67.1.3 62931 1fmtA 314 74.37 b.46.1.1,c.65.1.1 25758,34174 1xdwA 331 75.44 1sc6A 404 75.53 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2pocA 367 75.69 1m6sA 347 76.82 c.67.1.1 78701 2pv7A 298 77.03 1a0p 290 77.84 1vp4A 425 78.18 c.67.1.1 113935 2gaiA 633 78.21 2dgmA 466 78.41 c.67.1.6 131508 1a99A 344 79.03 c.94.1.1 35812 2iuyA 342 81.12 2gmsA 390 81.13 1zp4A 304 82.43 1fmjA 351 83.02 c.37.1.5 59879 2e7jA 371 83.57 2cstA 411 84.55 c.67.1.1 34273 1bvyF 191 85.08 c.23.5.1 31207 1ynuA 473 86.91 c.67.1.4 123762 1gca 309 86.97 1v72A 356 88.07 c.67.1.1 119860 1uu1A 335 89.33 c.67.1.1 99993 1umdA 367 89.39 c.36.1.11 99599 2vgfA 528 89.48