# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.23e-26 c.107.1.2 71342 1k20A 310 2.33e-23 c.107.1.1 68027 2eb0A 307 3.99e-21 2qb7A 397 3.85e-18 1wpnA 188 3.28e-15 c.107.1.1 114826 2rgyA 290 2.594 2oq2A 261 2.764 1w23A 360 4.074 c.67.1.4 114088 1rrmA 386 4.447 e.22.1.2 105081 2pocA 367 5.483 1k92A 455 8.553 c.26.2.1,d.210.1.1 68325,68326 1v4vA 376 9.059 c.87.1.3 100313 1wy5A 317 9.609 c.26.2.5,d.229.1.1 121428,121429 3brsA 289 10.27 1pzgA 331 10.51 c.2.1.5,d.162.1.1 95425,95426 2z1yA 397 10.64 2p1zA 180 10.73 1m3sA 186 11.86 c.80.1.3 78573 1d2fA 390 12.45 c.67.1.3 34411 3cvjA 243 12.54 1pmmA 466 12.80 c.67.1.6 94901 3beoA 375 12.91 8abpA 306 13.02 c.93.1.1 35647 2fepA 289 13.38 1eg5A 384 13.54 c.67.1.3 34429 2dr1A 386 13.88 2ahrA 259 15.15 a.100.1.10,c.2.1.6 126775,126776 2bkwA 385 15.43 c.67.1.3 128714 2o0rA 411 15.59 2fyfA 398 15.99 2fn9A 290 17.09 2dtvA 397 17.27 8abp 306 17.38 2qvcA 313 17.70 1vimA 200 17.87 c.80.1.3 100758 2fnuA 375 18.04 c.67.1.4 133831 1tk9A 188 18.12 c.80.1.3 107082 2driA 271 18.49 c.93.1.1 35637 2qs9A 194 18.84 2zg5A 397 18.85 2dri 271 19.48 1kmkA 406 19.49 c.67.1.3 68696 1yrlA 491 19.55 1hyhA 309 20.25 c.2.1.5,d.162.1.1 30150,42117 3d02A 303 20.48 3bblA 287 20.52 1x9gA 200 21.36 c.33.1.3 109527 1miwA 404 25.71 a.173.1.1,d.218.1.4 79162,79163 1i36A 264 26.05 a.100.1.8,c.2.1.6 71108,71109 3c24A 286 26.70 2e18A 257 26.97 2fvyA 309 27.35 c.93.1.1 134227 2dgmA 466 28.25 c.67.1.6 131508 1ni5A 433 28.73 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2amlA 373 29.19 2cb0A 333 29.20 1vdmA 153 29.33 c.61.1.1 119994 2ioyA 283 29.57 2rhwA 283 30.64 1nriA 306 30.87 c.80.1.3 86123 2rjoA 332 30.88 1u08A 386 31.16 c.67.1.1 107543 2uz1A 563 31.93 2h3hA 313 33.56 2r85A 334 34.53 2ozvA 260 34.84 1gca 309 35.46 3cs3A 277 35.48 2yvaA 196 36.40 1yqgA 263 37.21 3c6qA 311 37.47 2px6A 316 38.77 1brtA 277 39.11 c.69.1.12 34699 2vgiA 528 39.50 1o2dA 371 39.90 e.22.1.2 86591 2vggA 528 40.52 2ordA 397 41.17 1a8qA 274 41.19 c.69.1.12 34702 2o8nA 265 41.28 1w7lA 422 41.79 c.67.1.1 109226 3dfuA 232 41.85 1jf9A 408 42.15 c.67.1.3 62931 1bykA 255 43.17 c.93.1.1 35706 2z20A 432 43.24 2a3nA 355 43.50 1j1iA 296 44.50 c.69.1.10 83977 2jejA 358 45.08 d.240.1.1,e.8.1.7 138284,138285 1guzA 310 45.61 c.2.1.5,d.162.1.1 65586,65587 1v93A 296 46.78 c.1.23.1 100532 2o4cA 380 48.43 1gdeA 389 48.79 c.67.1.1 60456 2v1pA 467 49.15 1r1dA 247 49.81 c.69.1.29 96813 1ars 396 51.46 1vl2A 421 51.95 c.26.2.1,d.210.1.1 108708,108709 1j1nA 492 53.06 c.94.1.1 83978 2o20A 332 53.44 1lehA 364 54.19 c.2.1.7,c.58.1.1 30268,33916 1xgkA 352 54.37 c.2.1.2 115286 2i2wA 212 54.92 3brqA 296 55.74 1zunA 325 56.03 c.26.2.2 125676 1nekA 588 56.60 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2df8A 325 57.96 2zc0A 407 58.72 2cb9A 244 58.99 1qgoA 264 59.01 c.92.1.2 35596 1f0kA 364 59.61 c.87.1.2 35465 1ff9A 450 60.95 c.2.1.3,d.81.1.2 30039,39954 2vgbA 528 61.57 2r60A 499 61.86 3c4vA 426 62.19 2b34A 199 63.25 2g5cA 281 64.24 a.100.1.12,c.2.1.6 134646,134647 1pbeA 394 65.59 c.3.1.2,d.16.1.2 30338,37869 2q28A 564 65.67 1a8sA 273 65.90 c.69.1.12 34710 2axqA 467 65.95 1vp4A 425 66.12 c.67.1.1 113935 2ewdA 317 67.03 1qmgA 524 67.25 a.100.1.2,c.2.1.6 18785,30182 1o4sA 389 67.67 c.67.1.1 86620 2gb3A 409 68.30 c.67.1.1 134903 2i76A 276 69.76 2ahdA 165 69.82 d.159.1.7 126752 2vgfA 528 70.23 1jeoA 180 70.44 c.80.1.3 66611 2yrrA 353 70.64 1c4xA 285 70.65 c.69.1.10 34684 1vp8A 201 70.82 c.49.1.2 113947 1o69A 394 70.87 c.67.1.4 92560 1k07A 263 71.18 d.157.1.1 77218 1m32A 366 71.90 c.67.1.3 78508 2h0aA 276 72.29 1oj7A 408 72.43 e.22.1.2 103971 2gekA 406 72.64 1jtvA 327 74.11 c.2.1.2 84230 1hyeA 313 76.04 c.2.1.5,d.162.1.1 61400,61401 6ldhA 329 76.07 c.2.1.5,d.162.1.1 30161,42128 7odcA 424 76.40 b.49.2.3,c.1.6.1 26488,28650 1t2dA 322 77.37 c.2.1.5,d.162.1.1 99084,99085 1x3mA 415 77.41 c.55.1.2,c.55.1.2 121664,121665 2cunA 410 78.08 2c0rA 362 79.11 c.67.1.4 129604 1bg6A 359 80.65 a.100.1.5,c.2.1.6 18810,30214 1yksA 440 81.84 c.37.1.14,c.37.1.14 123561,123562 2qvbA 297 82.49 2e7jA 371 82.91 2f1kA 279 83.40 a.100.1.12,c.2.1.6 132772,132773 1khbA 625 85.42 c.91.1.1,c.109.1.1 68606,68607 1vfgA 390 86.48 a.173.1.1,d.218.1.4 108570,108571 1wstA 417 86.80 c.67.1.1 121244 1v6sA 390 86.97 c.86.1.1 100424 3clkA 290 87.29 2iksA 293 88.00 1zjaA 557 88.07 1yizA 429 88.13 c.67.1.1 123375 1drwA 273 88.28 c.2.1.3,d.81.1.3 30057,39972 1bd0A 388 88.66 b.49.2.2,c.1.6.1 26480,28642 1pjaA 302 88.76 c.69.1.13 94758 1azwA 313 88.89 c.69.1.7 34658 3ctpA 330 89.30 1zejA 293 89.69