# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 6.17e-11 c.107.1.2 71342 1k20A 310 2.68e-07 c.107.1.1 68027 2eb0A 307 4.09e-06 1wpnA 188 2.46e-05 c.107.1.1 114826 2qb7A 397 4.67e-05 2axqA 467 1.106 1ff9A 450 4.243 c.2.1.3,d.81.1.2 30039,39954 1iowA 306 4.289 c.30.1.2,d.142.1.1 31713,41481 1yqzA 438 4.485 1ygyA 529 5.496 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 3bh1A 507 5.869 1dv2A 452 6.834 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1uc8A 280 7.252 c.30.1.6,d.142.1.7 99165,99166 1ehiA 377 7.932 c.30.1.2,d.142.1.1 31716,41484 2dr1A 386 8.664 2yrxA 451 9.088 2dplA 308 11.42 1cs1A 386 13.64 c.67.1.3 34399 2e7jA 371 13.67 1jf9A 408 14.19 c.67.1.3 62931 2ordA 397 14.85 1iow 306 15.10 1n2eA 300 15.39 c.26.1.4 85268 2iv2X 715 15.72 b.52.2.2,c.81.1.1 137714,137715 2fb9A 322 16.40 1v8fA 276 16.70 c.26.1.4 100503 2v7bA 529 16.95 1qmgA 524 17.01 a.100.1.2,c.2.1.6 18785,30182 2ivfA 976 17.26 2hufA 393 17.41 1ituA 369 18.63 c.1.9.7 71423 1ni5A 433 19.09 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1yb4A 295 19.61 1sxjC 340 20.96 a.80.1.1,c.37.1.20 106085,106086 1kmkA 406 21.42 c.67.1.3 68696 1ta9A 450 22.41 1oi7A 288 22.75 c.2.1.8,c.23.4.1 87049,87050 1dv1A 449 23.53 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1ihoA 283 24.16 c.26.1.4 62390 1v2dA 381 24.89 c.67.1.1 108281 1ti6A 875 25.55 b.52.2.2,c.81.1.1 106974,106975 2r7aA 256 25.97 1kjqA 391 28.03 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2ez2A 456 28.46 1gadO 330 28.62 c.2.1.3,d.81.1.1 29950,39865 1vl2A 421 28.69 c.26.2.1,d.210.1.1 108708,108709 1pswA 348 30.53 c.87.1.7 88287 2ahrA 259 31.41 a.100.1.10,c.2.1.6 126775,126776 1rm4A 337 31.60 c.2.1.3,d.81.1.1 105000,105001 2vapA 364 32.64 2cy8A 453 34.02 3cmcO 334 34.42 1oc2A 348 34.56 c.2.1.2 92765 2c5aA 379 34.80 c.2.1.2 129894 2vpzA 765 35.83 2z4sA 440 36.34 1q7gA 359 36.54 c.2.1.3,d.81.1.2 96038,96039 2cmdA 312 36.58 c.2.1.5,d.162.1.1 30135,42102 2fuvA 549 37.06 1y4iA 398 37.16 c.67.1.3 122619 1w5fA 353 37.33 c.32.1.1,d.79.2.1 114247,114248 1aquA 297 38.31 c.37.1.5 31942 1y8qB 640 38.51 2yw2A 424 39.20 1sffA 426 39.73 c.67.1.4 105482 1ez4A 318 40.05 c.2.1.5,d.162.1.1 64917,64918 1e5eA 404 40.34 c.67.1.3 59265 1w5dA 462 40.59 e.3.1.3 120642 1zud1 251 40.64 1obfO 335 40.85 c.2.1.3,d.81.1.1 86768,86769 1j32A 388 41.59 c.67.1.1 77067 1m32A 366 41.71 c.67.1.3 78508 2pn1A 331 41.89 1y8qA 346 42.03 1gdeA 389 42.74 c.67.1.1 60456 2g7zA 282 43.68 1t0bA 252 43.91 c.23.16.6 106199 2p10A 286 44.09 2ejwA 332 44.18 2e18A 257 44.36 1u8fO 335 44.62 c.2.1.3,d.81.1.1 119626,119627 1rrvA 416 44.70 c.87.1.5 105083 2o7cA 398 45.56 2epjA 434 45.87 2yrrA 353 45.91 2zc0A 407 47.44 1up7A 417 47.77 c.2.1.5,d.162.1.2 113374,113375 1t3iA 420 47.82 c.67.1.3 106354 1qz9A 416 47.84 c.67.1.3 96621 2z1yA 397 49.98 1bg6A 359 50.21 a.100.1.5,c.2.1.6 18810,30214 2gwhA 298 50.57 2dtvA 397 50.60 1hyhA 309 50.62 c.2.1.5,d.162.1.1 30150,42117 1vhvA 268 51.90 c.90.1.1 100704 1p5dX 463 52.03 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3b8xA 390 52.24 2cmd 312 52.54 1g3mA 294 53.00 c.37.1.5 83268 1vjoA 393 53.49 c.67.1.3 100827 1iugA 352 54.97 c.67.1.3 90699 1gd1O 334 55.46 c.2.1.3,d.81.1.1 29962,39877 1h3fA 432 56.22 c.26.1.1,d.66.1.4 76631,76632 1vjtA 483 56.87 c.2.1.5,d.162.1.2 100833,100834 3cklA 298 57.02 1yizA 429 57.04 c.67.1.1 123375 2iidA 498 58.41 c.3.1.2,d.16.1.5 137426,137427 2dwcA 433 58.51 2rghA 571 59.93 1qdlB 195 60.51 c.23.16.1 31437 1jq5A 370 60.73 e.22.1.2 67084 2napA 723 63.09 b.52.2.2,c.81.1.1 26926,35334 2zdhA 319 63.57 1ynuA 473 64.09 c.67.1.4 123762 2oatA 439 64.37 c.67.1.4 34452 2r6r1 338 64.40 1ibjA 464 65.38 c.67.1.3 62162 2qbuA 232 66.26 2in3A 216 66.49 1d7uA 433 66.59 c.67.1.4 34439 1d2nA 272 66.90 c.37.1.20 32428 1m6sA 347 67.14 c.67.1.1 78701 1t4bA 367 68.19 c.2.1.3,d.81.1.1 106406,106407 2o3iA 405 69.32 1bg6 359 69.45 1fmjA 351 69.74 c.37.1.5 59879 1rq2A 382 70.32 c.32.1.1,d.79.2.1 105048,105049 2g82A 331 70.99 c.2.1.3,d.81.1.1 134746,134747 2pb2A 420 71.63 1u8xX 472 71.78 c.2.1.5,d.162.1.2 107741,107742 1ebfA 358 71.87 c.2.1.3,d.81.1.2 30033,39948 2nx9A 464 74.29 1guzA 310 74.54 c.2.1.5,d.162.1.1 65586,65587 2z9wA 392 74.62 1i7nA 309 74.75 c.30.1.5,d.142.1.3 83681,83682 1ktbA 405 74.97 b.71.1.1,c.1.8.1 72960,72961 1vknA 351 75.33 c.2.1.3,d.81.1.1 108676,108677 1wqaA 455 75.39 2iyfA 430 76.25 1h0hA 977 76.32 b.52.2.2,c.81.1.1 76435,76436 1jxhA 288 76.98 c.72.1.2 67415 1cjcA 460 77.72 c.3.1.1,c.4.1.1 30319,30604 1eg5A 384 77.75 c.67.1.3 34429 2amlA 373 77.86 4uagA 437 78.54 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2cduA 452 79.73 2r2nA 425 80.28 2v3vA 723 80.34 2czcA 334 80.49 d.81.1.1 131044 1lc5A 364 80.70 c.67.1.1 73827 1w7lA 422 81.29 c.67.1.1 109226 2ex2A 458 81.31 e.3.1.3 132497 2hp1A 432 81.34 1r0kA 388 82.12 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1k3tA 359 84.40 c.2.1.3,d.81.1.1 72022,72023 2yyyA 343 84.73 2i87A 364 84.74 1mldA 314 85.38 c.2.1.5,d.162.1.1 30122,42089 1uxjA 309 85.43 c.2.1.5,d.162.1.1 108112,108113 2hmaA 376 85.65 1yzxA 226 86.89 2z0jA 237 87.80 1f0kA 364 87.83 c.87.1.2 35465 2vktA 289 88.26 1kgsA 225 88.31 a.4.6.1,c.23.1.1 68596,68597 1b7gO 340 89.34 c.2.1.3,d.81.1.1 29992,39907