# List of top-scoring protein chains for T0501.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 4.00e-36 c.107.1.2 71342 2hawA 309 6.07e-33 c.107.1.1 136299 1i74A 309 5.41e-32 c.107.1.1 61867 2enxA 310 1.39e-31 2iw4A 309 2.09e-31 1wppA 311 1.05e-30 c.107.1.1 114828 1k20A 310 1.72e-30 c.107.1.1 68027 2eb0A 307 2.16e-28 1wpnA 188 3.47e-27 c.107.1.1 114826 2qb7A 397 1.19e-13 2q8nA 460 0.3263 2a9gA 418 0.4223 d.126.1.4 126435 2abrA 418 0.4951 d.126.1.4 126530 2aafA 418 0.5206 d.126.1.4 126471 2aciA 418 0.8412 d.126.1.4 126551 1rxxA 421 0.9521 d.126.1.4 98061 1s1mA 545 1.299 c.23.16.1,c.37.1.10 105201,105202 2g6pA 304 4.111 2oauA 306 5.030 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2bghA 421 5.638 1nw1A 429 6.987 d.144.1.8 86286 2fn3A 528 8.815 c.31.1.3,c.36.1.5,c.36.1.9 133803,133804,133805 2v3wA 528 9.264 1ynoA 527 9.374 c.31.1.3,c.36.1.5,c.36.1.9 123747,123748,123749 2fwnA 528 9.468 c.31.1.3,c.36.1.5,c.36.1.9 134249,134250,134251 2b3hA 329 9.471 1pi3A 528 9.661 c.31.1.3,c.36.1.5,c.36.1.9 111633,111634,111635 1q6zA 528 10.10 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1k38A 254 10.10 e.3.1.1 84303 2iswA 323 10.77 2otlA 239 11.81 b.34.5.3,b.40.4.5 139345,139346 1vqoA 240 12.18 b.34.5.3,b.40.4.5 120361,120362 1p9nA 170 14.79 c.37.1.10 87997 1np6A 174 14.97 c.37.1.10 85954 1pffA 331 16.57 c.67.1.3 104143 2pn1A 331 17.94 2yy2A 333 18.31 3bilA 348 19.24 2fm4A 128 20.15 c.8.1.1 133760 3bn1A 373 21.46 2hd1A 326 21.86 a.211.1.2 136338 1jj2A 239 24.62 b.34.5.3,b.40.4.5 63084,63085 1l9xA 315 25.04 c.23.16.1 73762 1i1qA 520 25.72 d.161.1.1 61543 1nj1A 501 28.08 c.51.1.1,d.68.5.1,d.104.1.1 85755,85756,85757 1sebD 234 28.65 b.40.2.2,d.15.6.1 25194,37783 1xdiA 499 29.41 c.3.1.5,d.87.1.1 115160,115161 1hv8A 367 30.36 c.37.1.19,c.37.1.19 32405,32406 2ohgA 264 30.84 1e5mA 416 31.82 c.95.1.1,c.95.1.1 58973,58974 2f46A 156 32.58 2r0tA 390 33.00 2hoqA 241 34.86 3sebA 238 36.92 b.40.2.2,d.15.6.1 25184,37773 1wzaA 488 37.41 b.71.1.1,c.1.8.1 121489,121490 1se4A 239 38.13 b.40.2.2,d.15.6.1 25187,37776 1gozA 239 39.19 b.40.2.2,d.15.6.1 65435,65436 1c07A 95 40.26 a.39.1.6 17337 2ohoA 273 41.32 3gbpA 307 45.96 c.93.1.1 35661 1gcaA 309 47.08 c.93.1.1 35659 2gmsA 390 49.12 3c6cA 316 49.16 3b8xA 390 52.82 2adcA 229 53.55 d.58.7.1,d.58.7.1 126582,126583 2i8lA 156 53.92 1svbA 395 54.22 b.1.18.4,f.10.1.1 21814,43827 2e85A 159 54.70 2fvyA 309 55.22 c.93.1.1 134227 1uouA 474 55.58 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2epgA 487 56.63 1oqyA 368 57.88 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 3d1cA 369 58.20 1xxlA 239 58.37 c.66.1.41 116203 1jb9A 316 58.43 b.43.4.2,c.25.1.1 62840,62841 2ehoA 203 60.06 3bhnA 236 61.04 2j0fA 482 61.08 2gfoA 396 62.72 d.3.1.9 135105 1urzA 401 63.00 b.1.18.4,f.10.1.1 99838,99839 1umgA 362 66.46 d.280.1.1 107956 3cj1A 456 67.61 2i7nA 360 67.65 2e9xD 223 67.99 1pl8A 356 68.40 b.35.1.2,c.2.1.1 94878,94879 2qrvA 295 68.86 2hphA 316 73.12 c.93.1.1 136652 2oocA 113 73.30 1epsA 427 74.00 d.68.2.2 39586 2fpnA 216 76.31 d.129.10.1 133908 1sfxA 109 77.79 a.4.5.50 105505 2onhA 543 78.78 2faoA 309 80.82 2rc5A 314 81.88 2btuA 346 83.87 2i7pA 362 84.18 2fn0A 437 87.25 d.161.1.1 133799 3bg1B 442 88.50 1el6A 219 89.96 d.182.1.1 42606