# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 7.39e-26 c.107.1.1 68027 1ir6A 424 2.16e-25 c.107.1.2 71342 1i74A 309 3.02e-24 c.107.1.1 61867 2eb0A 307 8.44e-23 2qb7A 397 2.38e-18 1wpnA 188 7.82e-16 c.107.1.1 114826 2rgyA 290 0.4874 3brqA 296 2.212 1tlfA 301 2.233 c.93.1.1 35687 2fepA 289 2.541 2o20A 332 2.632 1d2fA 390 2.759 c.67.1.3 34411 3cs3A 277 4.426 2iksA 293 5.045 3c3kA 285 5.870 3bblA 287 6.103 1dbqA 289 6.132 c.93.1.1 35666 2qu7A 288 6.328 1jftA 340 7.465 a.35.1.5,c.93.1.1 66652,66653 8abp 306 7.632 1rzuA 485 7.812 c.87.1.8 105140 1bykA 255 7.972 c.93.1.1 35706 1gudA 288 8.285 c.93.1.1 83326 2dri 271 8.541 3brsA 289 8.576 2jejA 358 8.880 d.240.1.1,e.8.1.7 138284,138285 2fn9A 290 9.251 8abpA 306 9.336 c.93.1.1 35647 1bw0A 416 9.456 c.67.1.1 34385 1ybhA 590 9.491 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 3bilA 348 10.61 1a76 326 10.98 1xngA 268 12.28 c.26.2.1 122186 1jeoA 180 13.58 c.80.1.3 66611 2oq2A 261 13.93 1jyeA 349 13.99 c.93.1.1 67455 2ioyA 283 14.02 1surA 215 14.37 c.26.2.2 31620 1rxwA 336 14.48 a.60.7.1,c.120.1.2 98059,98060 2driA 271 14.67 c.93.1.1 35637 2pocA 367 14.90 2ejaA 338 15.26 3c6qA 311 16.34 1vpdA 299 17.54 a.100.1.1,c.2.1.6 113951,113952 1b8gA 429 17.81 c.67.1.4 34499 1ynuA 473 18.06 c.67.1.4 123762 1pjqA 457 18.31 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1zclA 180 19.61 2e18A 257 19.63 3cogA 403 19.75 1td2A 287 20.89 c.72.1.5 106765 2qiwA 255 21.13 1pea 385 21.81 1gdeA 389 21.99 c.67.1.1 60456 1m32A 366 24.60 c.67.1.3 78508 2o1sA 621 25.07 1iirA 415 26.51 c.87.1.5 62453 1wd7A 261 27.03 c.113.1.1 114526 2fqxA 318 28.33 1o4sA 389 28.46 c.67.1.1 86620 3ce9A 354 29.99 1v1rA 400 31.25 c.36.1.11 108272 1usgA 346 33.00 c.93.1.1 99864 2a3nA 355 33.78 1gca 309 33.95 1bj4A 470 34.02 c.67.1.4 34479 2dplA 308 34.10 1vimA 200 34.25 c.80.1.3 100758 2ewsA 287 34.37 1m6sA 347 34.54 c.67.1.1 78701 1vjoA 393 34.81 c.67.1.3 100827 1zunA 325 36.66 c.26.2.2 125676 1n4aA 252 36.72 c.92.2.2 85317 3d02A 303 36.87 2jfuA 291 38.70 1vpvA 300 38.96 c.119.1.1 113975 1efvA 315 39.20 c.26.2.3,c.31.1.2 31633,31728 2yvtA 260 39.47 2ahrA 259 39.61 a.100.1.10,c.2.1.6 126775,126776 1qmgA 524 39.82 a.100.1.2,c.2.1.6 18785,30182 1v4vA 376 40.24 c.87.1.3 100313 2bfdA 400 41.79 2c3zA 222 41.84 1poxA 585 42.25 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1tjyA 316 45.23 c.93.1.1 107062 1ujqA 305 45.61 c.1.12.7 99463 1y7lA 316 47.02 c.79.1.1 122695 1k77A 260 49.35 c.1.15.5 72096 1pmmA 466 49.50 c.67.1.6 94901 1efvB 255 49.77 c.26.2.3 31634 1sc6A 404 50.57 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2fvyA 309 50.58 c.93.1.1 134227 1xqwA 293 51.27 2c31A 568 51.58 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1m22A 503 51.84 c.117.1.1 78464 1potA 325 51.84 c.94.1.1 35807 2hk9A 275 52.13 1x9iA 302 52.39 c.80.1.1 114997 1f6dA 376 54.47 c.87.1.3 35467 1c7nA 399 54.63 c.67.1.3 34413 1v7zA 260 54.89 c.125.1.1 100488 1nriA 306 54.93 c.80.1.3 86123 1o97D 320 55.27 c.26.2.3,c.31.1.2 81233,81234 2gekA 406 55.58 1j0aA 325 56.04 c.79.1.1 83871 1x92A 199 56.52 c.80.1.3 114976 1wxiA 275 56.64 c.26.2.1 121400 1jg8A 347 56.65 c.67.1.1 62946 2pq6A 482 56.68 1m3sA 186 56.73 c.80.1.3 78573 1v2dA 381 57.28 c.67.1.1 108281 2ay1A 394 57.53 c.67.1.1 34357 1bjwA 382 57.79 c.67.1.1 34349 1nytA 271 58.06 c.2.1.7,c.58.1.5 86417,86418 1v7cA 351 59.34 c.79.1.1 100446 2h0aA 276 59.64 1q0qA 406 60.21 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1s3iA 310 60.66 b.46.1.1,c.65.1.1 98435,98436 2q28A 564 60.71 1kqpA 271 60.89 c.26.2.1 72883 1wy5A 317 61.06 c.26.2.5,d.229.1.1 121428,121429 1sur 215 61.68 1wuuA 399 63.35 d.14.1.5,d.58.26.7 114900,114901 1ni5A 433 64.36 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2ihtA 573 64.91 1lsuA 147 66.20 c.2.1.9 74250 3b5vA 248 66.69 1moq 368 67.43 3ctpA 330 67.62 2dt8A 280 68.09 1b5pA 385 68.54 c.67.1.1 90403 1xvwA 160 69.79 c.47.1.10 122387 1w85A 368 71.14 c.36.1.11 114335 1h1yA 228 71.36 c.1.2.2 76506 1kl1A 419 71.43 c.67.1.4 72663 1fmtA 314 72.21 b.46.1.1,c.65.1.1 25758,34174 1ru8A 232 72.70 c.26.2.1 97849 2iyaA 424 72.72 1ve2A 235 73.41 c.90.1.1 120008 2gzmA 267 74.11 1jx4A 352 75.31 d.240.1.1,e.8.1.7 90378,90379 1np7A 489 75.57 a.99.1.1,c.28.1.1 80677,80678 1vl2A 421 75.71 c.26.2.1,d.210.1.1 108708,108709 2iswA 323 75.73 1okrA 123 75.89 a.4.5.39 93269 2z9wA 392 76.12 1vzwA 244 77.38 c.1.2.1 120553 1bfd 528 77.97 1b43A 340 79.02 a.60.7.1,c.120.1.2 18092,33362 2df8A 325 79.38 1ibjA 464 80.69 c.67.1.3 62162 1m7yA 435 81.59 c.67.1.4 78761 1n2eA 300 81.87 c.26.1.4 85268 2liv 344 83.80 2infA 359 84.61 2z20A 432 84.71 2ehhA 294 84.86 2rjoA 332 84.91 2h3hA 313 85.01 1qz9A 416 85.65 c.67.1.3 96621 1dxy 333 85.80 2dwuA 276 86.06 1z7wA 322 86.53 c.79.1.1 124674 2rfgA 297 86.76 1fkx 349 86.81 1us5A 314 87.77 c.94.1.1 99856 3clkA 290 88.06 1v71A 323 88.31 c.79.1.1 119859 1e5kA 201 88.38 c.68.1.8 34578 1wstA 417 88.64 c.67.1.1 121244 1eluA 390 88.64 c.67.1.3 34434 2hqbA 296 88.97 1qj5A 429 89.11 c.67.1.4 34493 1u5kA 244 89.61 b.40.4.13,g.45.1.2 113038,113039