# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 4.16e-25 c.107.1.2 71342 1k20A 310 6.67e-25 c.107.1.1 68027 1i74A 309 1.65e-23 c.107.1.1 61867 2eb0A 307 6.24e-23 2qb7A 397 3.48e-19 1wpnA 188 1.40e-15 c.107.1.1 114826 2rgyA 290 0.6356 1tlfA 301 1.879 c.93.1.1 35687 3brqA 296 2.377 2fepA 289 2.750 1pjqA 457 3.050 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fn9A 290 3.608 3c3kA 285 3.721 3cs3A 277 4.295 8abp 306 4.435 2ioyA 283 4.533 2dri 271 4.574 1jftA 340 4.590 a.35.1.5,c.93.1.1 66652,66653 3bilA 348 4.651 1dbqA 289 4.769 c.93.1.1 35666 2o20A 332 4.961 2qu7A 288 5.135 1gudA 288 5.332 c.93.1.1 83326 8abpA 306 6.298 c.93.1.1 35647 3bblA 287 6.469 2ejaA 338 6.784 1gca 309 7.912 1jeoA 180 8.001 c.80.1.3 66611 2pocA 367 8.317 2iksA 293 8.681 3d02A 303 9.408 1bykA 255 9.456 c.93.1.1 35706 2driA 271 10.53 c.93.1.1 35637 3brsA 289 10.80 1jyeA 349 11.59 c.93.1.1 67455 2fvyA 309 11.80 c.93.1.1 134227 1x92A 199 13.58 c.80.1.3 114976 1vpdA 299 13.79 a.100.1.1,c.2.1.6 113951,113952 1wuuA 399 14.26 d.14.1.5,d.58.26.7 114900,114901 1vimA 200 15.46 c.80.1.3 100758 2dplA 308 16.23 1elqA 390 16.32 c.67.1.3 34436 2yvaA 196 16.98 1b8gA 429 17.61 c.67.1.4 34499 1ynuA 473 20.12 c.67.1.4 123762 1eluA 390 20.25 c.67.1.3 34434 1tk9A 188 20.40 c.80.1.3 107082 1xngA 268 21.41 c.26.2.1 122186 3c6qA 311 22.08 1iirA 415 23.32 c.87.1.5 62453 1rxwA 336 24.42 a.60.7.1,c.120.1.2 98059,98060 1ybhA 590 26.48 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2h0aA 276 27.04 3cogA 403 28.75 1bj4A 470 29.33 c.67.1.4 34479 1efvB 255 32.00 c.26.2.3 31634 2ay1A 394 32.09 c.67.1.1 34357 2fyfA 398 32.38 1t3iA 420 32.45 c.67.1.3 106354 1jx6A 342 32.68 c.93.1.1 67406 1m32A 366 32.76 c.67.1.3 78508 1x9iA 302 33.01 c.80.1.1 114997 2iuyA 342 33.02 1rzuA 485 33.80 c.87.1.8 105140 2dtvA 397 33.83 2ahrA 259 34.01 a.100.1.10,c.2.1.6 126775,126776 1zunA 325 35.59 c.26.2.2 125676 1gpjA 404 35.71 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1wd7A 261 35.80 c.113.1.1 114526 1ve2A 235 35.84 c.90.1.1 120008 2a3nA 355 35.89 1rrmA 386 36.03 e.22.1.2 105081 1kqpA 271 36.84 c.26.2.1 72883 3ctpA 330 37.29 2infA 359 38.03 1v2dA 381 38.40 c.67.1.1 108281 1m3sA 186 38.88 c.80.1.3 78573 2aefA 234 39.16 1gdeA 389 40.07 c.67.1.1 60456 1surA 215 40.34 c.26.2.2 31620 1d2fA 390 40.66 c.67.1.3 34411 1f6dA 376 41.09 c.87.1.3 35467 1owlA 484 41.95 a.99.1.1,c.28.1.1 93647,93648 1nal1 297 42.79 1poxA 585 43.26 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2jfuA 291 44.20 2d5cA 263 44.51 1c7nA 399 45.26 c.67.1.3 34413 2z20A 432 46.56 2z1yA 397 47.22 2qiwA 255 48.52 2zg5A 397 49.06 1kyhA 276 49.18 c.72.1.4 73222 1kkhA 317 49.88 d.14.1.5,d.58.26.3 72645,72646 2atsA 292 50.05 c.1.10.1 127306 2qryA 330 50.70 1usgA 346 50.76 c.93.1.1 99864 3cvjA 243 50.79 2i2wA 212 50.81 2purA 292 51.38 1bw0A 416 53.89 c.67.1.1 34385 1vjoA 393 54.01 c.67.1.3 100827 1nytA 271 54.13 c.2.1.7,c.58.1.5 86417,86418 1yqgA 263 54.20 7aatA 401 54.27 c.67.1.1 34250 1i36A 264 54.52 a.100.1.8,c.2.1.6 71108,71109 2fqxA 318 54.56 2ehhA 294 54.71 1vl2A 421 54.85 c.26.2.1,d.210.1.1 108708,108709 1wstA 417 54.90 c.67.1.1 121244 2rjoA 332 55.25 1u5kA 244 56.24 b.40.4.13,g.45.1.2 113038,113039 1umdB 324 57.25 c.36.1.7,c.48.1.2 99600,99601 2oq2A 261 57.82 1wxiA 275 58.09 c.26.2.1 121400 1v4vA 376 58.45 c.87.1.3 100313 1e5dA 402 58.90 c.23.5.1,d.157.1.3 31208,42061 1dhpA 292 58.95 c.1.10.1 29097 2bfdA 400 59.43 1mdoA 393 59.46 c.67.1.4 79013 2rfgA 297 59.70 1qj5A 429 60.93 c.67.1.4 34493 2e7jA 371 61.65 1tjyA 316 61.87 c.93.1.1 107062 1kl1A 419 62.21 c.67.1.4 72663 1efvA 315 62.50 c.26.2.3,c.31.1.2 31633,31728 1qgoA 264 62.59 c.92.1.2 35596 1gsoA 431 63.32 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2gekA 406 63.35 2pk3A 321 63.53 2tpt 440 65.10 1npyA 271 65.39 c.2.1.7,c.58.1.5 85995,85996 1bfd 528 66.17 1mtzA 293 66.53 c.69.1.7 79467 2ihtA 573 67.06 2zc0A 407 67.10 2eggA 297 67.38 1wg8A 285 68.28 a.60.13.1,c.66.1.23 114605,114606 1q0uA 219 68.60 c.37.1.19 95512 3beoA 375 70.02 1uk8A 282 70.68 c.69.1.10 107907 1uu1A 335 70.68 c.67.1.1 99993 2c31A 568 70.72 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2gs8A 317 70.90 1j0aA 325 71.00 c.79.1.1 83871 2z9wA 392 71.21 2ax4A 198 71.31 1o4sA 389 71.76 c.67.1.1 86620 1a0p 290 72.24 2ojpA 292 72.34 3caiA 406 72.37 2ac2A 309 72.52 1k77A 260 72.85 c.1.15.5 72096 1o69A 394 74.13 c.67.1.4 92560 1korA 400 74.74 c.26.2.1,d.210.1.1 72824,72825 2h3hA 313 75.49 1umdA 367 77.21 c.36.1.11 99599 1w3iA 293 77.77 c.1.10.1 109152 1n4aA 252 79.23 c.92.2.2 85317 1p5dX 463 79.47 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2dejA 350 80.12 1w85A 368 80.50 c.36.1.11 114335 2o1sA 621 80.89 1vljA 407 81.22 e.22.1.2 108832 2p1zA 180 81.37 2c3zA 222 82.35 2b2nA 344 84.23 c.37.1.19 127710 1o97D 320 86.00 c.26.2.3,c.31.1.2 81233,81234 1bjwA 382 86.02 c.67.1.1 34349 1eg5A 384 86.58 c.67.1.3 34429 1vp4A 425 86.65 c.67.1.1 113935 1wy5A 317 87.31 c.26.2.5,d.229.1.1 121428,121429 1pea 385 89.84 2a19B 284 89.98