# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 7.36e-24 c.107.1.2 71342 1k20A 310 2.58e-23 c.107.1.1 68027 1i74A 309 5.30e-22 c.107.1.1 61867 2eb0A 307 1.65e-21 2qb7A 397 2.99e-18 1wpnA 188 9.10e-15 c.107.1.1 114826 2rgyA 290 0.7872 1tlfA 301 1.814 c.93.1.1 35687 1pjqA 457 2.787 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fepA 289 3.023 3brqA 296 3.192 2ioyA 283 3.313 2dri 271 3.424 2fn9A 290 3.431 3c3kA 285 3.704 3cs3A 277 4.052 3bilA 348 4.093 1jftA 340 4.107 a.35.1.5,c.93.1.1 66652,66653 8abp 306 4.723 1dbqA 289 4.974 c.93.1.1 35666 1gudA 288 6.228 c.93.1.1 83326 8abpA 306 6.366 c.93.1.1 35647 1jeoA 180 6.496 c.80.1.3 66611 2driA 271 7.187 c.93.1.1 35637 2pocA 367 7.344 2o20A 332 7.882 2ejaA 338 8.152 3bblA 287 8.817 2qu7A 288 9.066 1gca 309 9.068 2iksA 293 9.819 1bykA 255 9.876 c.93.1.1 35706 1jyeA 349 10.15 c.93.1.1 67455 3brsA 289 10.37 1vimA 200 11.34 c.80.1.3 100758 1x92A 199 11.42 c.80.1.3 114976 1wuuA 399 12.62 d.14.1.5,d.58.26.7 114900,114901 3d02A 303 13.08 2fvyA 309 13.58 c.93.1.1 134227 2yvaA 196 13.79 1vpdA 299 16.29 a.100.1.1,c.2.1.6 113951,113952 2dplA 308 16.76 1x9iA 302 17.84 c.80.1.1 114997 1ynuA 473 17.88 c.67.1.4 123762 1d2fA 390 19.08 c.67.1.3 34411 1rzuA 485 19.55 c.87.1.8 105140 1rrmA 386 20.60 e.22.1.2 105081 1b8gA 429 20.88 c.67.1.4 34499 2c31A 568 21.84 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1ybhA 590 22.34 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1kyhA 276 23.33 c.72.1.4 73222 3c6qA 311 24.15 1elqA 390 24.97 c.67.1.3 34436 1poxA 585 25.56 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1jx6A 342 27.99 c.93.1.1 67406 2qryA 330 28.99 1eluA 390 29.29 c.67.1.3 34434 3ctpA 330 29.32 1iirA 415 29.34 c.87.1.5 62453 2ahrA 259 30.15 a.100.1.10,c.2.1.6 126775,126776 3cogA 403 30.66 1tk9A 188 31.04 c.80.1.3 107082 1m3sA 186 31.13 c.80.1.3 78573 2h0aA 276 31.99 1bj4A 470 32.51 c.67.1.4 34479 1m32A 366 32.56 c.67.1.3 78508 2q28A 564 32.93 1v2dA 381 33.35 c.67.1.1 108281 2fyfA 398 33.53 1bfd 528 33.62 1wd7A 261 36.13 c.113.1.1 114526 1efvB 255 36.25 c.26.2.3 31634 2fqxA 318 37.02 1zunA 325 37.45 c.26.2.2 125676 2ihtA 573 37.74 1kqpA 271 37.86 c.26.2.1 72883 2jfuA 291 37.97 2i2wA 212 38.98 1efvA 315 39.68 c.26.2.3,c.31.1.2 31633,31728 1gpjA 404 41.04 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1yqgA 263 42.53 1xngA 268 43.01 c.26.2.1 122186 2d5cA 263 44.80 1vjoA 393 45.48 c.67.1.3 100827 2gekA 406 45.81 2a3nA 355 46.04 2ay1A 394 46.74 c.67.1.1 34357 1n4aA 252 46.96 c.92.2.2 85317 3cvjA 243 47.83 2gs8A 317 48.11 2iuyA 342 49.15 2purA 292 49.65 1nytA 271 50.47 c.2.1.7,c.58.1.5 86417,86418 2ghrA 302 50.95 c.23.16.8 135208 1t3iA 420 52.08 c.67.1.3 106354 2atsA 292 52.69 c.1.10.1 127306 1surA 215 53.42 c.26.2.2 31620 1c7nA 399 53.74 c.67.1.3 34413 1rxwA 336 53.83 a.60.7.1,c.120.1.2 98059,98060 1pieA 419 54.12 d.14.1.5,d.58.26.7 94706,94707 1qj5A 429 54.79 c.67.1.4 34493 1i36A 264 55.05 a.100.1.8,c.2.1.6 71108,71109 2b61A 377 55.60 1umdB 324 55.66 c.36.1.7,c.48.1.2 99600,99601 1ve2A 235 56.39 c.90.1.1 120008 1o97D 320 57.30 c.26.2.3,c.31.1.2 81233,81234 2oq2A 261 57.78 2h3hA 313 59.57 2qiwA 255 59.62 2e7jA 371 59.81 1wxiA 275 60.31 c.26.2.1 121400 3caiA 406 61.34 2ojpA 292 61.74 2eggA 297 62.06 1gdeA 389 62.27 c.67.1.1 60456 1qmgA 524 63.66 a.100.1.2,c.2.1.6 18785,30182 1f6dA 376 63.78 c.87.1.3 35467 1nal1 297 64.19 2p1zA 180 64.70 2z9wA 392 64.95 1kkhA 317 65.03 d.14.1.5,d.58.26.3 72645,72646 2bfdA 400 65.45 1brmA 367 65.72 c.2.1.3,d.81.1.1 30030,39945 2rjoA 332 65.72 2dtvA 397 66.21 2hk9A 275 66.23 1usgA 346 66.58 c.93.1.1 99864 1mdoA 393 67.38 c.67.1.4 79013 2z20A 432 67.69 2z1yA 397 67.89 1tjyA 316 68.30 c.93.1.1 107062 1dhpA 292 68.41 c.1.10.1 29097 2o1sA 621 68.70 2infA 359 68.87 2b2nA 344 68.97 c.37.1.19 127710 1o69A 394 69.09 c.67.1.4 92560 2hqbA 296 69.83 1mtzA 293 69.90 c.69.1.7 79467 2qh8A 302 70.00 1pea 385 70.56 1q6zA 528 71.84 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2ac2A 309 71.85 2z1mA 345 72.15 1q0uA 219 74.11 c.37.1.19 95512 2aefA 234 76.57 1q0qA 406 77.23 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1npyA 271 77.89 c.2.1.7,c.58.1.5 85995,85996 1v4vA 376 79.18 c.87.1.3 100313 1w3iA 293 79.26 c.1.10.1 109152 1kl1A 419 79.46 c.67.1.4 72663 2df8A 325 79.65 1w85A 368 80.91 c.36.1.11 114335 2zg5A 397 82.11 1wg8A 285 82.13 a.60.13.1,c.66.1.23 114605,114606 1bw0A 416 82.90 c.67.1.1 34385 1umdA 367 83.26 c.36.1.11 99599 7aatA 401 84.68 c.67.1.1 34250 2uz1A 563 85.32 2ehhA 294 85.55 3beoA 375 85.88 2pk3A 321 87.41 1uk8A 282 87.79 c.69.1.10 107907 1ibjA 464 88.37 c.67.1.3 62162 1j0aA 325 88.37 c.79.1.1 83871 1zejA 293 88.92 1vl2A 421 89.10 c.26.2.1,d.210.1.1 108708,108709 1qdeA 224 89.42 c.37.1.19 32410 1q52A 314 89.55 c.14.1.3 95846