# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.83e-26 c.107.1.2 71342 1k20A 310 2.42e-24 c.107.1.1 68027 1i74A 309 1.59e-23 c.107.1.1 61867 2eb0A 307 8.45e-22 2qb7A 397 9.13e-19 1wpnA 188 3.82e-16 c.107.1.1 114826 8abpA 306 1.328 c.93.1.1 35647 2fepA 289 1.833 2fn9A 290 2.433 2rgyA 290 2.581 8abp 306 2.701 2hufA 393 3.678 1d2fA 390 4.108 c.67.1.3 34411 1gudA 288 4.332 c.93.1.1 83326 3c6qA 311 4.483 1jeoA 180 4.913 c.80.1.3 66611 3cs3A 277 5.077 3brsA 289 5.787 1korA 400 5.995 c.26.2.1,d.210.1.1 72824,72825 2dri 271 6.298 2iksA 293 6.861 2driA 271 7.245 c.93.1.1 35637 1v2dA 381 7.838 c.67.1.1 108281 2o20A 332 7.847 1gca 309 10.16 2qu7A 288 10.34 2oq2A 261 10.62 1x92A 199 10.93 c.80.1.3 114976 1gdeA 389 11.07 c.67.1.1 60456 1x9iA 302 11.54 c.80.1.1 114997 1b8gA 429 11.55 c.67.1.4 34499 2yvaA 196 11.93 2e7jA 371 12.42 1nriA 306 12.77 c.80.1.3 86123 1rzuA 485 13.46 c.87.1.8 105140 1wd7A 261 13.54 c.113.1.1 114526 2h3hA 313 13.74 2qvcA 313 14.09 2gekA 406 14.29 3brqA 296 14.30 1eg5A 384 14.52 c.67.1.3 34429 1tlfA 301 14.61 c.93.1.1 35687 2p6pA 384 15.19 2zc0A 407 15.90 2fvyA 309 16.22 c.93.1.1 134227 1wuuA 399 17.34 d.14.1.5,d.58.26.7 114900,114901 1bykA 255 17.36 c.93.1.1 35706 2ioyA 283 17.36 1vimA 200 19.36 c.80.1.3 100758 1tk9A 188 19.64 c.80.1.3 107082 1u5kA 244 20.21 b.40.4.13,g.45.1.2 113038,113039 3d02A 303 20.44 1okrA 123 20.53 a.4.5.39 93269 1iirA 415 20.55 c.87.1.5 62453 2df8A 325 22.39 1pieA 419 25.01 d.14.1.5,d.58.26.7 94706,94707 1vjoA 393 25.07 c.67.1.3 100827 1ynuA 473 27.05 c.67.1.4 123762 1vmeA 410 29.50 c.23.5.1,d.157.1.3 108893,108894 1dbqA 289 30.43 c.93.1.1 35666 2a3nA 355 30.53 2dtvA 397 30.87 2pocA 367 32.76 1up7A 417 33.25 c.2.1.5,d.162.1.2 113374,113375 2i2wA 212 34.21 1tjyA 316 34.64 c.93.1.1 107062 2amlA 373 34.94 3beoA 375 35.17 1wcwA 261 36.23 3c3kA 285 37.41 1sd4A 126 37.73 a.4.5.39 105428 2dplA 308 39.07 2qryA 330 39.62 3bilA 348 40.25 2gs8A 317 40.45 1wstA 417 41.21 c.67.1.1 121244 1lc5A 364 41.32 c.67.1.1 73827 2cb0A 333 41.81 1nytA 271 42.67 c.2.1.7,c.58.1.5 86417,86418 2ahrA 259 43.25 a.100.1.10,c.2.1.6 126775,126776 1vl2A 421 43.28 c.26.2.1,d.210.1.1 108708,108709 1j5xA 342 44.24 c.80.1.1 71591 1m3sA 186 44.83 c.80.1.3 78573 2ay1A 394 44.85 c.67.1.1 34357 1yqgA 263 44.97 1bfd 528 45.89 2o8nA 265 46.34 1moq 368 47.85 1ytvA 366 49.79 c.94.1.1 124016 1vecA 206 50.64 c.37.1.19 100575 1jyeA 349 52.96 c.93.1.1 67455 1c7nA 399 53.03 c.67.1.3 34413 2z43A 324 53.52 1uk8A 282 54.31 c.69.1.10 107907 2hnhA 910 54.54 1ja1A 622 55.30 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2z1yA 397 55.88 1t3iA 420 55.91 c.67.1.3 106354 2cyyA 151 55.99 a.4.5.32,d.58.4.2 131028,131029 1yzyA 413 57.05 c.146.1.1 124292 2oocA 113 57.50 1poxA 585 57.77 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2vd8A 391 58.71 1qtwA 285 60.84 c.1.15.1 29392 1gdhA 320 60.96 c.2.1.4,c.23.12.1 30095,31355 2zg5A 397 61.50 2qz8A 149 61.55 3bfxA 296 61.89 1pswA 348 62.16 c.87.1.7 88287 1v4vA 376 63.58 c.87.1.3 100313 3c1mA 473 63.73 1p3wA 404 63.83 c.67.1.3 87752 2e5fA 325 64.57 1va0A 239 64.85 c.90.1.1 119899 1f6dA 376 65.19 c.87.1.3 35467 1kgsA 225 65.43 a.4.6.1,c.23.1.1 68596,68597 2rjoA 332 66.92 1w85A 368 67.00 c.36.1.11 114335 2c3zA 222 67.21 1o69A 394 67.61 c.67.1.4 92560 1xp3A 307 67.84 c.1.15.1 122210 7aatA 401 68.16 c.67.1.1 34250 2iw1A 374 69.36 c.87.1.8 137738 1l2lA 457 69.67 c.72.1.3 77656 2gsaA 432 70.51 c.67.1.4 34446 1k47A 337 71.33 d.14.1.5,d.58.26.4 72040,72041 2gzxA 265 71.82 1s0aA 429 72.92 c.67.1.4 98263 1jftA 340 73.15 a.35.1.5,c.93.1.1 66652,66653 1o4sA 389 73.85 c.67.1.1 86620 1o97D 320 74.30 c.26.2.3,c.31.1.2 81233,81234 1vljA 407 75.28 e.22.1.2 108832 3ctpA 330 76.12 1rrmA 386 76.77 e.22.1.2 105081 1k77A 260 77.63 c.1.15.5 72096 1umdA 367 78.78 c.36.1.11 99599 1vpvA 300 79.12 c.119.1.1 113975 2afhE 289 79.57 c.37.1.10 126683 1k92A 455 80.18 c.26.2.1,d.210.1.1 68325,68326 2hd1A 326 80.43 a.211.1.2 136338 1m32A 366 81.38 c.67.1.3 78508 1pea 385 82.26 3b9oA 440 82.97 1wy5A 317 83.01 c.26.2.5,d.229.1.1 121428,121429 1y7lA 316 83.96 c.79.1.1 122695 1ri7A 171 84.90 a.4.5.32,d.58.4.2 97504,97505 2jhnA 295 85.36 1m7yA 435 85.64 c.67.1.4 78761 2q14A 410 85.90 1u16A 472 85.92 a.127.1.1 112952 1vqrA 297 88.65 a.211.1.3 114015 1vjtA 483 88.96 c.2.1.5,d.162.1.2 100833,100834 2nogA 173 89.32