# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 3.27e-27 c.107.1.2 71342 1k20A 310 5.29e-27 c.107.1.1 68027 1i74A 309 3.04e-25 c.107.1.1 61867 2eb0A 307 1.97e-24 2qb7A 397 7.04e-21 1wpnA 188 4.11e-16 c.107.1.1 114826 1tlfA 301 1.479 c.93.1.1 35687 2fepA 289 2.248 2rgyA 290 2.939 1gudA 288 3.596 c.93.1.1 83326 1jeoA 180 4.043 c.80.1.3 66611 1wuuA 399 4.642 d.14.1.5,d.58.26.7 114900,114901 1pjqA 457 5.077 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1dbqA 289 5.141 c.93.1.1 35666 3cs3A 277 5.682 2ejaA 338 5.840 2qu7A 288 6.051 1ynuA 473 6.231 c.67.1.4 123762 3c3kA 285 6.408 1b8gA 429 6.627 c.67.1.4 34499 3brsA 289 6.798 1jftA 340 7.828 a.35.1.5,c.93.1.1 66652,66653 2iksA 293 8.194 1d2fA 390 8.416 c.67.1.3 34411 1jyeA 349 8.687 c.93.1.1 67455 2dri 271 8.855 3d02A 303 8.978 1ybhA 590 9.048 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 8abp 306 9.147 1rzuA 485 10.78 c.87.1.8 105140 2fn9A 290 12.19 2oq2A 261 12.85 1bykA 255 12.91 c.93.1.1 35706 1vimA 200 14.05 c.80.1.3 100758 2o20A 332 14.86 3bblA 287 15.35 1yaaA 412 15.74 c.67.1.1 34280 1poxA 585 16.03 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2ay1A 394 16.24 c.67.1.1 34357 3bilA 348 16.40 1gca 309 18.53 1x92A 199 18.87 c.80.1.3 114976 1xngA 268 19.15 c.26.2.1 122186 2infA 359 19.23 2gekA 406 20.60 1efvB 255 20.74 c.26.2.3 31634 3c6qA 311 20.90 1m32A 366 21.16 c.67.1.3 78508 2driA 271 21.70 c.93.1.1 35637 1eluA 390 22.32 c.67.1.3 34434 2ioyA 283 23.00 8abpA 306 24.94 c.93.1.1 35647 3brqA 296 25.50 1a76 326 25.66 7aatA 401 27.06 c.67.1.1 34250 1elqA 390 27.82 c.67.1.3 34436 1bj4A 470 28.43 c.67.1.4 34479 1m3sA 186 28.51 c.80.1.3 78573 1bfd 528 29.97 1t3iA 420 30.12 c.67.1.3 106354 1bw0A 416 30.57 c.67.1.1 34385 2pocA 367 30.80 2qiwA 255 31.14 2q28A 564 31.17 1yqgA 263 31.54 2ahrA 259 32.52 a.100.1.10,c.2.1.6 126775,126776 1nriA 306 33.13 c.80.1.3 86123 1m7yA 435 33.56 c.67.1.4 78761 1vjoA 393 33.90 c.67.1.3 100827 1iirA 415 34.35 c.87.1.5 62453 2dplA 308 35.01 1tk9A 188 35.10 c.80.1.3 107082 1uk8A 282 35.21 c.69.1.10 107907 1wd7A 261 37.17 c.113.1.1 114526 1vp4A 425 37.68 c.67.1.1 113935 2ehhA 294 38.43 1qj5A 429 38.74 c.67.1.4 34493 2hqbA 296 39.24 2qryA 330 39.42 2df8A 325 39.68 1owlA 484 40.42 a.99.1.1,c.28.1.1 93647,93648 1rxwA 336 40.46 a.60.7.1,c.120.1.2 98059,98060 1vpdA 299 41.28 a.100.1.1,c.2.1.6 113951,113952 1o4sA 389 41.34 c.67.1.1 86620 1efvA 315 42.29 c.26.2.3,c.31.1.2 31633,31728 2rfgA 297 42.39 1nal1 297 42.42 2pk3A 321 42.47 1f6dA 376 43.59 c.87.1.3 35467 1f74A 293 43.91 c.1.10.1 29079 1surA 215 44.58 c.26.2.2 31620 1vpvA 300 45.29 c.119.1.1 113975 2fyfA 398 45.39 2fvyA 309 45.54 c.93.1.1 134227 1c7nA 399 45.63 c.67.1.3 34413 1gpjA 404 45.72 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1gdeA 389 47.28 c.67.1.1 60456 2c31A 568 48.11 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1td2A 287 49.84 c.72.1.5 106765 1tjyA 316 49.93 c.93.1.1 107062 2z9wA 392 49.94 2iuyA 342 50.48 3cvjA 243 51.47 1sc6A 404 52.14 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1jx6A 342 52.66 c.93.1.1 67406 1q6zA 528 53.00 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1j5xA 342 54.87 c.80.1.1 71591 2r2nA 425 54.91 1zclA 180 55.27 1x9iA 302 55.35 c.80.1.1 114997 1hl2A 297 56.28 c.1.10.1 83581 1v4vA 376 56.83 c.87.1.3 100313 2cstA 411 57.22 c.67.1.1 34273 2fqxA 318 57.27 2eggA 297 57.29 1mtzA 293 57.79 c.69.1.7 79467 2z20A 432 57.90 1bjwA 382 57.96 c.67.1.1 34349 1qz9A 416 58.11 c.67.1.3 96621 2yvaA 196 59.07 1us5A 314 59.23 c.94.1.1 99856 2jfuA 291 59.93 1ni5A 433 60.68 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1q0qA 406 61.05 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2r91A 286 61.14 1wg8A 285 61.81 a.60.13.1,c.66.1.23 114605,114606 1k2wA 256 63.73 c.2.1.2 90927 2e18A 257 64.17 1v2dA 381 64.58 c.67.1.1 108281 1m22A 503 64.84 c.117.1.1 78464 1qmgA 524 66.88 a.100.1.2,c.2.1.6 18785,30182 1o97D 320 66.94 c.26.2.3,c.31.1.2 81233,81234 1arsA 396 67.18 c.67.1.1 34287 1sur 215 67.24 1w3iA 293 67.65 c.1.10.1 109152 1m6sA 347 68.22 c.67.1.1 78701 1qgoA 264 68.96 c.92.1.2 35596 2dt8A 280 70.00 2b2nA 344 70.37 c.37.1.19 127710 1mdoA 393 71.36 c.67.1.4 79013 1wstA 417 74.29 c.67.1.1 121244 1u08A 386 74.32 c.67.1.1 107543 2h3hA 313 74.87 2f4nA 273 75.79 2q7wA 396 76.32 2ihtA 573 76.45 1cs1A 386 77.35 c.67.1.3 34399 1umdB 324 77.72 c.36.1.7,c.48.1.2 99600,99601 1xqwA 293 79.79 2ojpA 292 80.25 1ozhA 566 81.60 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1ujqA 305 81.76 c.1.12.7 99463 2cw5A 255 82.45 1lc5A 364 82.73 c.67.1.1 73827 1b5pA 385 82.98 c.67.1.1 90403 1usgA 346 84.40 c.93.1.1 99864 2pgd 482 84.66 1j0aA 325 85.06 c.79.1.1 83871 1km4A 247 86.27 c.1.2.3 72740 1pieA 419 86.29 d.14.1.5,d.58.26.7 94706,94707 1uu1A 335 86.42 c.67.1.1 99993 1wwmA 190 86.47 a.132.1.3 121363 2dtvA 397 87.36 1dhpA 292 87.47 c.1.10.1 29097 2o1sA 621 87.74 2zc0A 407 88.15 1kqpA 271 88.49 c.26.2.1 72883 1umdA 367 89.62 c.36.1.11 99599 1a04A 215 89.86 a.4.6.2,c.23.1.1 16234,31089