# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.43e-25 c.107.1.2 71342 1k20A 310 1.83e-24 c.107.1.1 68027 1i74A 309 1.78e-22 c.107.1.1 61867 2eb0A 307 1.35e-21 2qb7A 397 1.26e-18 1wpnA 188 2.38e-14 c.107.1.1 114826 1tlfA 301 3.951 c.93.1.1 35687 1gsoA 431 4.017 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2fepA 289 4.509 8abp 306 5.308 1gudA 288 5.668 c.93.1.1 83326 1v4vA 376 7.770 c.87.1.3 100313 1b8gA 429 8.266 c.67.1.4 34499 1f6dA 376 9.246 c.87.1.3 35467 1jeoA 180 9.495 c.80.1.3 66611 1t9bA 677 10.11 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 3d02A 303 10.19 2ihtA 573 11.98 2qu7A 288 12.52 2ejaA 338 12.56 3cs3A 277 13.44 2iksA 293 14.01 1jyeA 349 14.58 c.93.1.1 67455 1d2fA 390 14.69 c.67.1.3 34411 1q6zA 528 14.97 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 7aatA 401 15.46 c.67.1.1 34250 3c3kA 285 15.46 2bfdA 400 15.88 1ynuA 473 16.07 c.67.1.4 123762 2qryA 330 17.03 1jftA 340 17.68 a.35.1.5,c.93.1.1 66652,66653 8abpA 306 17.85 c.93.1.1 35647 1wuuA 399 18.05 d.14.1.5,d.58.26.7 114900,114901 2dri 271 18.41 1wqaA 455 19.28 2fn9A 290 19.48 3brsA 289 19.81 1pjqA 457 20.05 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fuvA 549 20.11 1qo8A 566 21.38 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1dbqA 289 21.57 c.93.1.1 35666 2oq2A 261 22.07 1ht6A 405 22.23 b.71.1.1,c.1.8.1 83629,83630 2o1sA 621 23.15 2aaa 484 24.02 2rjoA 332 24.04 1w79A 489 25.25 e.3.1.3 120680 1vp4A 425 26.71 c.67.1.1 113935 1vimA 200 26.73 c.80.1.3 100758 2dr1A 386 27.12 2driA 271 27.94 c.93.1.1 35637 1ru8A 232 28.97 c.26.2.1 97849 2z20A 432 29.27 1o97D 320 29.67 c.26.2.3,c.31.1.2 81233,81234 1x92A 199 29.69 c.80.1.3 114976 3c6qA 311 30.25 1v2dA 381 30.69 c.67.1.1 108281 1gca 309 30.79 1m32A 366 30.90 c.67.1.3 78508 1rxwA 336 31.89 a.60.7.1,c.120.1.2 98059,98060 1fmtA 314 32.11 b.46.1.1,c.65.1.1 25758,34174 1efvB 255 32.87 c.26.2.3 31634 2c42A 1231 33.01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2uz1A 563 33.03 1iirA 415 33.25 c.87.1.5 62453 2rgyA 290 33.63 1o4sA 389 34.09 c.67.1.1 86620 1vl2A 421 34.49 c.26.2.1,d.210.1.1 108708,108709 2ioyA 283 35.31 1bfd 528 35.45 2ojpA 292 36.16 1s0aA 429 36.18 c.67.1.4 98263 2dplA 308 36.61 2nxwA 565 36.89 2cunA 410 37.35 1vljA 407 37.45 e.22.1.2 108832 1x6vA 630 37.48 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1w5dA 462 38.47 e.3.1.3 120642 3cogA 403 39.76 1qmgA 524 40.09 a.100.1.2,c.2.1.6 18785,30182 1owlA 484 41.06 a.99.1.1,c.28.1.1 93647,93648 1u08A 386 41.18 c.67.1.1 107543 2aaaA 484 41.27 b.71.1.1,c.1.8.1 27777,28764 1qg8A 255 41.31 c.68.1.1 34505 2pocA 367 41.44 2o20A 332 42.08 1db3A 372 43.09 c.2.1.2 29813 2zg5A 397 43.10 2qiwA 255 43.75 2hqbA 296 43.88 1uk8A 282 44.31 c.69.1.10 107907 3bilA 348 45.77 1gdeA 389 45.90 c.67.1.1 60456 1arsA 396 47.13 c.67.1.1 34287 1jx6A 342 47.55 c.93.1.1 67406 2h2zA 306 48.67 2jejA 358 48.95 d.240.1.1,e.8.1.7 138284,138285 1m3sA 186 49.90 c.80.1.3 78573 1xi9A 406 50.28 c.67.1.1 115355 1bw0A 416 52.89 c.67.1.1 34385 1ni5A 433 53.25 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2q28A 564 54.26 1qj5A 429 54.67 c.67.1.4 34493 2yweA 600 55.07 2v5xA 388 55.14 1np7A 489 56.08 a.99.1.1,c.28.1.1 80677,80678 2b61A 377 56.41 2z9wA 392 57.46 1ozhA 566 58.10 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1vjoA 393 58.40 c.67.1.3 100827 2ixtA 310 59.55 1vpdA 299 59.59 a.100.1.1,c.2.1.6 113951,113952 1j32A 388 59.95 c.67.1.1 77067 1x9iA 302 60.38 c.80.1.1 114997 1yqgA 263 60.93 1xngA 268 61.61 c.26.2.1 122186 1elqA 390 62.00 c.67.1.3 34436 1ytvA 366 62.01 c.94.1.1 124016 3brqA 296 63.01 1eg5A 384 63.78 c.67.1.3 34429 1surA 215 64.74 c.26.2.2 31620 1bykA 255 65.12 c.93.1.1 35706 2cstA 411 65.13 c.67.1.1 34273 2g1iA 563 65.75 1k2wA 256 65.91 c.2.1.2 90927 1zejA 293 66.15 2z1mA 345 66.42 2pyxA 526 66.66 1t3iA 420 66.85 c.67.1.3 106354 1tk9A 188 66.93 c.80.1.3 107082 1q16A 1247 67.08 b.52.2.2,c.81.1.1 95546,95547 1v25A 541 68.30 e.23.1.1 108275 1p5dX 463 68.31 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1zpdA 568 68.63 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2ac2A 309 69.10 1tjyA 316 69.20 c.93.1.1 107062 1nofA 383 69.63 b.71.1.2,c.1.8.3 92020,92021 1hl2A 297 69.70 c.1.10.1 83581 1f0yA 302 69.73 a.100.1.3,c.2.1.6 18793,30197 1kqpA 271 70.30 c.26.2.1 72883 1x1nA 524 70.50 c.1.8.1 121593 2df8A 325 72.27 2yvaA 196 72.46 2e18A 257 73.16 2infA 359 73.34 1mtzA 293 73.38 c.69.1.7 79467 2ahrA 259 74.42 a.100.1.10,c.2.1.6 126775,126776 1v1rA 400 75.77 c.36.1.11 108272 2nacA 393 76.43 c.2.1.4,c.23.12.1 30088,31348 2ax3A 502 77.31 c.72.1.4,c.104.1.1 127477,127478 2pk3A 321 78.02 1bif 469 78.26 1o69A 394 79.45 c.67.1.4 92560 1qz9A 416 80.88 c.67.1.3 96621 2bw0A 329 81.03 b.46.1.1,c.65.1.1 129303,129304 1zclA 180 81.08 1kjqA 391 82.45 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2a3nA 355 83.86 1zq1A 438 84.28 b.38.3.1,c.88.1.1 125489,125490 2o8bA 934 84.97 1pwhA 327 85.20 c.79.1.1 95224 1wyuA 438 85.34 c.67.1.7 121452 2fqxA 318 85.56 1f74A 293 86.23 c.1.10.1 29079 2ixdA 242 86.41 1wd7A 261 87.06 c.113.1.1 114526 1qs0B 338 87.08 c.36.1.7,c.48.1.2 31830,33103 2h3hA 313 87.52 1wv2A 265 88.37 c.1.31.1 114910 2pqpA 421 88.54 2atsA 292 89.16 c.1.10.1 127306 1vfsA 386 89.71 b.49.2.2,c.1.6.1 108584,108585