# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 7.79e-27 c.107.1.2 71342 1k20A 310 3.49e-26 c.107.1.1 68027 1i74A 309 1.80e-24 c.107.1.1 61867 2eb0A 307 9.57e-24 2qb7A 397 1.28e-20 1wpnA 188 8.74e-16 c.107.1.1 114826 1tlfA 301 2.280 c.93.1.1 35687 1gudA 288 2.331 c.93.1.1 83326 2fepA 289 2.349 1jeoA 180 2.724 c.80.1.3 66611 2rgyA 290 3.567 2iksA 293 4.461 1ybhA 590 5.432 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 3c3kA 285 5.567 3cs3A 277 5.741 1pjqA 457 5.825 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 3brsA 289 6.206 3d02A 303 6.214 2dri 271 6.493 8abp 306 6.761 1wuuA 399 7.085 d.14.1.5,d.58.26.7 114900,114901 2qu7A 288 7.172 1ynuA 473 8.002 c.67.1.4 123762 1poxA 585 8.155 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1dbqA 289 8.188 c.93.1.1 35666 1jyeA 349 8.746 c.93.1.1 67455 1vimA 200 8.806 c.80.1.3 100758 1jftA 340 9.087 a.35.1.5,c.93.1.1 66652,66653 2fn9A 290 9.911 1d2fA 390 12.29 c.67.1.3 34411 2driA 271 12.38 c.93.1.1 35637 2oq2A 261 12.92 3c6qA 311 12.98 1b8gA 429 13.60 c.67.1.4 34499 1gca 309 14.14 1x92A 199 16.16 c.80.1.3 114976 2ioyA 283 16.85 1bykA 255 16.87 c.93.1.1 35706 2ejaA 338 17.14 1bfd 528 18.02 1m3sA 186 18.93 c.80.1.3 78573 2qryA 330 19.49 1efvB 255 19.83 c.26.2.3 31634 3bblA 287 20.46 8abpA 306 21.79 c.93.1.1 35647 1xngA 268 22.27 c.26.2.1 122186 3bilA 348 24.11 2dplA 308 24.61 1t3iA 420 26.55 c.67.1.3 106354 2o20A 332 27.05 1iirA 415 27.24 c.87.1.5 62453 1rzuA 485 28.08 c.87.1.8 105140 2gekA 406 28.93 2q28A 564 29.22 1q6zA 528 30.31 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1m32A 366 30.62 c.67.1.3 78508 1jx6A 342 30.83 c.93.1.1 67406 1vjoA 393 30.98 c.67.1.3 100827 1efvA 315 31.32 c.26.2.3,c.31.1.2 31633,31728 1tjyA 316 31.79 c.93.1.1 107062 2hqbA 296 33.87 1yqgA 263 33.99 1yaaA 412 35.21 c.67.1.1 34280 1nriA 306 35.31 c.80.1.3 86123 1qj5A 429 35.97 c.67.1.4 34493 2fqxA 318 36.02 1uk8A 282 36.39 c.69.1.10 107907 2ay1A 394 36.99 c.67.1.1 34357 1gdeA 389 37.12 c.67.1.1 60456 1tk9A 188 37.16 c.80.1.3 107082 2ahrA 259 37.52 a.100.1.10,c.2.1.6 126775,126776 1zclA 180 37.52 3brqA 296 37.87 2fvyA 309 38.03 c.93.1.1 134227 2c31A 568 38.29 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1mtzA 293 38.42 c.69.1.7 79467 1kqpA 271 39.05 c.26.2.1 72883 1bj4A 470 39.60 c.67.1.4 34479 1qz9A 416 40.12 c.67.1.3 96621 2pk3A 321 41.42 1c7nA 399 41.58 c.67.1.3 34413 2infA 359 42.12 1bw0A 416 42.20 c.67.1.1 34385 2qiwA 255 42.29 2ihtA 573 42.45 1a76 326 43.08 1surA 215 43.12 c.26.2.2 31620 1f74A 293 43.51 c.1.10.1 29079 1xqwA 293 43.72 1o97D 320 44.47 c.26.2.3,c.31.1.2 81233,81234 1eluA 390 44.75 c.67.1.3 34434 2df8A 325 44.99 2fyfA 398 45.32 2ghrA 302 46.04 c.23.16.8 135208 1gpjA 404 46.18 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1wd7A 261 46.81 c.113.1.1 114526 1elqA 390 46.87 c.67.1.3 34436 1vpdA 299 47.22 a.100.1.1,c.2.1.6 113951,113952 2yvaA 196 48.32 7aatA 401 48.41 c.67.1.1 34250 1ni5A 433 48.93 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2ehhA 294 49.10 1vp4A 425 50.38 c.67.1.1 113935 1x9iA 302 50.71 c.80.1.1 114997 2h3hA 313 51.32 1f6dA 376 51.45 c.87.1.3 35467 1nal1 297 51.99 2rfgA 297 53.31 2z9wA 392 54.64 1u08A 386 54.71 c.67.1.1 107543 1j5xA 342 55.94 c.80.1.1 71591 1q0qA 406 56.37 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1owlA 484 58.53 a.99.1.1,c.28.1.1 93647,93648 2e18A 257 58.54 1hl2A 297 58.63 c.1.10.1 83581 1qgoA 264 60.90 c.92.1.2 35596 1cs1A 386 61.47 c.67.1.3 34399 1wg8A 285 61.56 a.60.13.1,c.66.1.23 114605,114606 1o4sA 389 61.90 c.67.1.1 86620 2o1sA 621 61.96 1vl2A 421 62.11 c.26.2.1,d.210.1.1 108708,108709 2rjoA 332 62.23 1v4vA 376 62.64 c.87.1.3 100313 1sur 215 63.60 1us5A 314 64.43 c.94.1.1 99856 2r2nA 425 65.06 1n4aA 252 67.40 c.92.2.2 85317 1w3iA 293 67.69 c.1.10.1 109152 2pocA 367 67.85 1qg8A 255 67.97 c.68.1.1 34505 2jfuA 291 68.89 2a3nA 355 69.05 1vpvA 300 69.26 c.119.1.1 113975 1bjwA 382 69.30 c.67.1.1 34349 1umdB 324 69.39 c.36.1.7,c.48.1.2 99600,99601 2pgd 482 72.06 1km4A 247 72.47 c.1.2.3 72740 1wxiA 275 73.15 c.26.2.1 121400 1umdA 367 73.75 c.36.1.11 99599 1v2dA 381 74.31 c.67.1.1 108281 2iuyA 342 74.57 1k2wA 256 74.66 c.2.1.2 90927 1fpzA 212 74.77 c.45.1.1 59976 2r91A 286 74.87 1rxwA 336 74.91 a.60.7.1,c.120.1.2 98059,98060 1m7yA 435 75.28 c.67.1.4 78761 1lc5A 364 76.86 c.67.1.1 73827 1q52A 314 78.29 c.14.1.3 95846 1ve2A 235 79.18 c.90.1.1 120008 3cogA 403 79.27 3ctpA 330 81.31 2zc0A 407 82.00 2b2nA 344 82.83 c.37.1.19 127710 1wcwA 261 83.51 1kjqA 391 83.83 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2z20A 432 84.04 2ojpA 292 85.71 1sc6A 404 85.97 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2cstA 411 87.23 c.67.1.1 34273 1gsoA 431 87.56 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492