# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.90e-26 c.107.1.2 71342 1k20A 310 6.41e-26 c.107.1.1 68027 1i74A 309 1.97e-24 c.107.1.1 61867 2eb0A 307 1.03e-23 2qb7A 397 7.54e-20 1wpnA 188 6.26e-16 c.107.1.1 114826 2rgyA 290 0.6896 2fepA 289 2.076 1d2fA 390 2.336 c.67.1.3 34411 3cs3A 277 2.590 2iksA 293 2.658 1tlfA 301 2.892 c.93.1.1 35687 3c3kA 285 3.431 2dri 271 5.423 2oq2A 261 5.885 3brsA 289 5.935 1gudA 288 6.296 c.93.1.1 83326 1dbqA 289 6.504 c.93.1.1 35666 1jeoA 180 6.975 c.80.1.3 66611 1jyeA 349 7.486 c.93.1.1 67455 3brqA 296 7.674 1jftA 340 8.466 a.35.1.5,c.93.1.1 66652,66653 2driA 271 8.983 c.93.1.1 35637 2fn9A 290 9.320 1wuuA 399 9.434 d.14.1.5,d.58.26.7 114900,114901 1b8gA 429 9.537 c.67.1.4 34499 2qu7A 288 9.96 8abp 306 10.22 1rzuA 485 10.71 c.87.1.8 105140 1bykA 255 10.82 c.93.1.1 35706 2ioyA 283 11.58 1zclA 180 12.49 2o20A 332 13.02 3bilA 348 13.44 2ejaA 338 13.58 1ynuA 473 13.68 c.67.1.4 123762 2z9wA 392 14.04 3bblA 287 16.28 1iirA 415 16.30 c.87.1.5 62453 2dplA 308 17.94 2pocA 367 18.01 2o1sA 621 18.13 1gca 309 19.46 1ybhA 590 19.73 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1bj4A 470 20.64 c.67.1.4 34479 1vimA 200 20.66 c.80.1.3 100758 1c7nA 399 20.76 c.67.1.3 34413 1vpdA 299 20.80 a.100.1.1,c.2.1.6 113951,113952 1surA 215 21.03 c.26.2.2 31620 2infA 359 23.06 1gdeA 389 23.44 c.67.1.1 60456 8abpA 306 23.76 c.93.1.1 35647 1n4aA 252 23.78 c.92.2.2 85317 2qryA 330 23.94 2ay1A 394 27.03 c.67.1.1 34357 1xngA 268 27.86 c.26.2.1 122186 1o97D 320 28.70 c.26.2.3,c.31.1.2 81233,81234 1bw0A 416 28.82 c.67.1.1 34385 3ctpA 330 29.35 1gpjA 404 29.79 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1poxA 585 30.40 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1rrmA 386 31.36 e.22.1.2 105081 1m32A 366 31.47 c.67.1.3 78508 1uu1A 335 32.23 c.67.1.1 99993 1wy5A 317 33.67 c.26.2.5,d.229.1.1 121428,121429 3d02A 303 34.17 2gs8A 317 34.24 1efvB 255 34.38 c.26.2.3 31634 1ibjA 464 34.73 c.67.1.3 62162 1qmgA 524 34.77 a.100.1.2,c.2.1.6 18785,30182 2fyfA 398 35.14 1vl2A 421 35.69 c.26.2.1,d.210.1.1 108708,108709 2r2nA 425 36.07 1t3iA 420 36.54 c.67.1.3 106354 1a76 326 37.43 2qiwA 255 37.93 1pea 385 39.32 1elqA 390 39.33 c.67.1.3 34436 1korA 400 39.44 c.26.2.1,d.210.1.1 72824,72825 1m3sA 186 39.64 c.80.1.3 78573 3cogA 403 40.25 1e5dA 402 41.01 c.23.5.1,d.157.1.3 31208,42061 1td2A 287 41.08 c.72.1.5 106765 1yaaA 412 41.89 c.67.1.1 34280 3c6qA 311 41.99 1pmmA 466 42.33 c.67.1.6 94901 1potA 325 43.62 c.94.1.1 35807 2jejA 358 43.93 d.240.1.1,e.8.1.7 138284,138285 1m6sA 347 44.18 c.67.1.1 78701 2fvyA 309 44.84 c.93.1.1 134227 2pk3A 321 45.62 1vjoA 393 45.80 c.67.1.3 100827 1xvwA 160 45.85 c.47.1.10 122387 1u08A 386 47.00 c.67.1.1 107543 1efvA 315 47.87 c.26.2.3,c.31.1.2 31633,31728 1vpvA 300 48.11 c.119.1.1 113975 1kl1A 419 48.51 c.67.1.4 72663 2gekA 406 50.20 1qj5A 429 50.85 c.67.1.4 34493 1v2dA 381 52.59 c.67.1.1 108281 1o4sA 389 52.73 c.67.1.1 86620 1usgA 346 53.37 c.93.1.1 99864 1k2wA 256 54.83 c.2.1.2 90927 1st9A 143 55.16 c.47.1.10 98987 2fqxA 318 55.80 1mtzA 293 56.38 c.69.1.7 79467 1f5nA 592 57.33 a.114.1.1,c.37.1.8 19077,32152 1km4A 247 57.41 c.1.2.3 72740 1eluA 390 57.52 c.67.1.3 34434 1x9iA 302 57.66 c.80.1.1 114997 7aatA 401 60.07 c.67.1.1 34250 3ce9A 354 65.04 2qs9A 194 65.86 1x92A 199 65.99 c.80.1.3 114976 2ahrA 259 66.68 a.100.1.10,c.2.1.6 126775,126776 1pjqA 457 68.62 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1cs1A 386 71.59 c.67.1.3 34399 1yi8A 351 71.77 1m7yA 435 71.92 c.67.1.4 78761 2liv 344 72.68 2e18A 257 73.22 1jg8A 347 73.35 c.67.1.1 62946 1vicA 262 73.40 c.68.1.13 100756 1rxwA 336 73.54 a.60.7.1,c.120.1.2 98059,98060 1qdeA 224 73.97 c.37.1.19 32410 1j5xA 342 74.26 c.80.1.1 71591 2iuyA 342 74.45 3caiA 406 74.85 2yvaA 196 75.16 1y7lA 316 76.23 c.79.1.1 122695 1m22A 503 76.26 c.117.1.1 78464 1jx6A 342 78.49 c.93.1.1 67406 1ni5A 433 79.32 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1s0aA 429 80.49 c.67.1.4 98263 1yqgA 263 80.94 1sc6A 404 81.43 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2h0aA 276 83.18 1o69A 394 84.89 c.67.1.4 92560 1wxiA 275 85.27 c.26.2.1 121400 1a0p 290 85.54 1kqpA 271 85.57 c.26.2.1 72883 2a3nA 355 85.62 2h2zA 306 87.87 2z1yA 397 87.88 1nriA 306 88.84 c.80.1.3 86123 2e9xC 219 89.30