# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.11e-27 c.107.1.2 71342 1k20A 310 8.84e-27 c.107.1.1 68027 1i74A 309 4.59e-25 c.107.1.1 61867 2eb0A 307 1.73e-24 2qb7A 397 3.08e-20 1wpnA 188 2.63e-16 c.107.1.1 114826 2rgyA 290 0.9655 3cs3A 277 1.396 1tlfA 301 2.012 c.93.1.1 35687 3c3kA 285 2.701 1gudA 288 2.952 c.93.1.1 83326 2fepA 289 3.282 2iksA 293 3.964 1d2fA 390 4.202 c.67.1.3 34411 8abp 306 4.326 1dbqA 289 4.950 c.93.1.1 35666 3brsA 289 5.090 1jeoA 180 5.158 c.80.1.3 66611 2fn9A 290 5.312 1jftA 340 6.628 a.35.1.5,c.93.1.1 66652,66653 1wuuA 399 6.939 d.14.1.5,d.58.26.7 114900,114901 2dri 271 7.145 3brqA 296 8.223 2ejaA 338 8.518 2qu7A 288 8.753 8abpA 306 10.03 c.93.1.1 35647 1vpdA 299 10.33 a.100.1.1,c.2.1.6 113951,113952 1jyeA 349 10.36 c.93.1.1 67455 2driA 271 10.75 c.93.1.1 35637 2dplA 308 12.42 2oq2A 261 12.47 2ioyA 283 12.80 3bblA 287 14.23 1zclA 180 14.76 1bykA 255 14.76 c.93.1.1 35706 2qryA 330 15.85 1surA 215 15.86 c.26.2.2 31620 1gca 309 16.29 2pk3A 321 16.40 3bilA 348 16.63 2o20A 332 17.38 2pocA 367 17.80 1vimA 200 18.32 c.80.1.3 100758 3d02A 303 19.34 1xngA 268 20.96 c.26.2.1 122186 1iirA 415 21.59 c.87.1.5 62453 1ynuA 473 21.71 c.67.1.4 123762 1n4aA 252 24.81 c.92.2.2 85317 1poxA 585 26.09 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1ybhA 590 27.64 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1rzuA 485 28.11 c.87.1.8 105140 1x9iA 302 29.39 c.80.1.1 114997 1o97D 320 29.67 c.26.2.3,c.31.1.2 81233,81234 1vjoA 393 29.67 c.67.1.3 100827 1qmgA 524 29.98 a.100.1.2,c.2.1.6 18785,30182 1kl1A 419 30.19 c.67.1.4 72663 2fvyA 309 30.92 c.93.1.1 134227 1rrmA 386 31.75 e.22.1.2 105081 1b8gA 429 31.79 c.67.1.4 34499 2z9wA 392 31.79 1bj4A 470 31.85 c.67.1.4 34479 2infA 359 32.18 1gpjA 404 32.56 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1ni5A 433 34.14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2ay1A 394 34.15 c.67.1.1 34357 7aatA 401 34.71 c.67.1.1 34250 3ctpA 330 35.64 1m3sA 186 35.86 c.80.1.3 78573 1nytA 271 35.93 c.2.1.7,c.58.1.5 86417,86418 2o1sA 621 36.91 1gdeA 389 37.77 c.67.1.1 60456 1m32A 366 38.02 c.67.1.3 78508 1ibjA 464 38.43 c.67.1.3 62162 1potA 325 39.59 c.94.1.1 35807 1f6dA 376 39.80 c.87.1.3 35467 1td2A 287 40.15 c.72.1.5 106765 1elqA 390 41.14 c.67.1.3 34436 3cogA 403 41.76 2bfdA 400 41.99 1vpvA 300 44.70 c.119.1.1 113975 1efvB 255 46.73 c.26.2.3 31634 1efvA 315 46.73 c.26.2.3,c.31.1.2 31633,31728 1ve2A 235 47.39 c.90.1.1 120008 1uu1A 335 47.43 c.67.1.1 99993 1pjqA 457 48.28 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1mdoA 393 48.41 c.67.1.4 79013 2e18A 257 48.50 1t3iA 420 48.60 c.67.1.3 106354 1e5dA 402 48.91 c.23.5.1,d.157.1.3 31208,42061 2jejA 358 49.15 d.240.1.1,e.8.1.7 138284,138285 1cs1A 386 50.17 c.67.1.3 34399 1yi8A 351 50.78 2ahrA 259 50.79 a.100.1.10,c.2.1.6 126775,126776 2qiwA 255 51.26 1c7nA 399 51.73 c.67.1.3 34413 1pieA 419 52.80 d.14.1.5,d.58.26.7 94706,94707 2dpiA 420 53.46 d.240.1.1,e.8.1.7 131612,131613 1tjyA 316 54.09 c.93.1.1 107062 1pea 385 54.34 2gekA 406 54.91 1x92A 199 55.98 c.80.1.3 114976 2fyfA 398 56.30 1a76 326 57.31 3c6qA 311 57.32 2eggA 297 58.21 2gs8A 317 58.83 2h0aA 276 59.04 1jx6A 342 60.07 c.93.1.1 67406 1v2dA 381 60.41 c.67.1.1 108281 1rxwA 336 60.48 a.60.7.1,c.120.1.2 98059,98060 1o69A 394 60.52 c.67.1.4 92560 1pmmA 466 60.73 c.67.1.6 94901 1j5xA 342 61.67 c.80.1.1 71591 1wy5A 317 61.85 c.26.2.5,d.229.1.1 121428,121429 1f5nA 592 62.80 a.114.1.1,c.37.1.8 19077,32152 1bw0A 416 64.47 c.67.1.1 34385 1sc6A 404 64.79 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2ghrA 302 65.31 c.23.16.8 135208 1st9A 143 66.07 c.47.1.10 98987 1a0p 290 67.29 1vl2A 421 67.51 c.26.2.1,d.210.1.1 108708,108709 2p1zA 180 68.54 2ac2A 309 68.69 1yaaA 412 68.88 c.67.1.1 34280 1o4sA 389 68.90 c.67.1.1 86620 1b9hA 388 69.29 c.67.1.4 34488 2f1kA 279 69.31 a.100.1.12,c.2.1.6 132772,132773 2liv 344 69.52 1eluA 390 69.88 c.67.1.3 34434 1kqpA 271 69.98 c.26.2.1 72883 1qj5A 429 70.75 c.67.1.4 34493 2z20A 432 72.42 1uk8A 282 73.15 c.69.1.10 107907 2r2nA 425 73.27 1m22A 503 73.69 c.117.1.1 78464 1qdeA 224 75.49 c.37.1.19 32410 2ewsA 287 76.29 2b2nA 344 76.63 c.37.1.19 127710 1korA 400 76.75 c.26.2.1,d.210.1.1 72824,72825 1bia 321 77.11 1ujqA 305 77.71 c.1.12.7 99463 1nriA 306 78.51 c.80.1.3 86123 1qg8A 255 78.97 c.68.1.1 34505 2fqxA 318 79.03 2alzA 390 79.35 d.240.1.1,e.8.1.7 126994,126995 1q0qA 406 80.56 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1yqgA 263 81.12 2hk9A 275 82.36 1mtzA 293 82.58 c.69.1.7 79467 1xvwA 160 84.02 c.47.1.10 122387 2z1nA 260 84.68 1u08A 386 85.06 c.67.1.1 107543 1q0uA 219 85.53 c.37.1.19 95512 1m6sA 347 87.04 c.67.1.1 78701 1sur 215 88.57 1km4A 247 88.68 c.1.2.3 72740 1moqA 368 89.11 c.80.1.1 35302 1zunA 325 89.42 c.26.2.2 125676 2h1vA 310 89.91