# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.85e-10 c.107.1.2 71342 1i74A 309 1.14e-07 c.107.1.1 61867 1k20A 310 2.57e-07 c.107.1.1 68027 2eb0A 307 2.25e-05 1wpnA 188 3.26e-05 c.107.1.1 114826 2qb7A 397 0.000137 2hufA 393 2.193 1ihoA 283 4.212 c.26.1.4 62390 1ygyA 529 5.231 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 3cogA 403 5.764 2axqA 467 7.638 1uc8A 280 7.860 c.30.1.6,d.142.1.7 99165,99166 1vjoA 393 8.691 c.67.1.3 100827 1ff9A 450 8.889 c.2.1.3,d.81.1.2 30039,39954 1qmgA 524 9.149 a.100.1.2,c.2.1.6 18785,30182 1iow 306 9.757 1pswA 348 9.801 c.87.1.7 88287 1dv1A 449 9.806 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2z9wA 392 10.26 1dv2A 452 10.74 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2imfA 203 12.54 2dplA 308 13.56 1y8qB 640 13.61 1fmtA 314 13.68 b.46.1.1,c.65.1.1 25758,34174 1m32A 366 13.95 c.67.1.3 78508 2blnA 305 14.69 b.46.1.1,c.65.1.1 128734,128735 1gdeA 389 15.63 c.67.1.1 60456 2b4rO 345 16.01 c.2.1.3,d.81.1.1 127845,127846 1n2eA 300 16.78 c.26.1.4 85268 2dr1A 386 17.67 1v8fA 276 18.09 c.26.1.4 100503 1y4iA 398 18.73 c.67.1.3 122619 2in3A 216 18.89 1h3fA 432 18.96 c.26.1.1,d.66.1.4 76631,76632 2b69A 343 19.34 c.2.1.2 127974 1fmjA 351 20.48 c.37.1.5 59879 2c5aA 379 21.07 c.2.1.2 129894 1sxjC 340 21.88 a.80.1.1,c.37.1.20 106085,106086 1u8fO 335 22.53 c.2.1.3,d.81.1.1 119626,119627 1ti6A 875 22.80 b.52.2.2,c.81.1.1 106974,106975 3bh1A 507 22.83 1eyzA 392 23.36 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2dtvA 397 24.25 1mb4A 370 24.45 c.2.1.3,d.81.1.1 78908,78909 1up7A 417 25.04 c.2.1.5,d.162.1.2 113374,113375 1kjqA 391 25.05 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1w7lA 422 25.55 c.67.1.1 109226 3cmcO 334 26.25 2yrrA 353 26.88 2z1yA 397 27.13 1ituA 369 27.85 c.1.9.7 71423 1gd1O 334 28.90 c.2.1.3,d.81.1.1 29962,39877 1yqzA 438 29.08 2bw0A 329 29.58 b.46.1.1,c.65.1.1 129303,129304 2z1mA 345 29.62 1gadO 330 31.29 c.2.1.3,d.81.1.1 29950,39865 1cs1A 386 32.13 c.67.1.3 34399 2douA 376 32.44 2yrxA 451 34.23 1rm4A 337 34.56 c.2.1.3,d.81.1.1 105000,105001 3cklA 298 34.64 1c7gA 456 35.44 c.67.1.2 90415 2cmdA 312 35.64 c.2.1.5,d.162.1.1 30135,42102 1b7gO 340 36.07 c.2.1.3,d.81.1.1 29992,39907 1k3tA 359 37.15 c.2.1.3,d.81.1.1 72022,72023 1js3A 486 40.05 c.67.1.6 67215 2ewdA 317 41.34 2g82A 331 42.05 c.2.1.3,d.81.1.1 134746,134747 2iv2X 715 42.60 b.52.2.2,c.81.1.1 137714,137715 2pn1A 331 42.71 1ni5A 433 42.91 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2zc0A 407 43.33 1t4bA 367 43.84 c.2.1.3,d.81.1.1 106406,106407 1q1rA 431 44.37 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1s3iA 310 47.75 b.46.1.1,c.65.1.1 98435,98436 2cmd 312 48.04 2gwhA 298 48.83 2czcA 334 48.89 d.81.1.1 131044 2vpzA 765 49.15 1wstA 417 49.32 c.67.1.1 121244 2p4hX 322 49.76 2exxA 306 50.25 1in6A 334 51.00 a.4.5.11,c.37.1.20 62601,62602 4uagA 437 52.03 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1korA 400 53.15 c.26.2.1,d.210.1.1 72824,72825 1bg6A 359 53.57 a.100.1.5,c.2.1.6 18810,30214 2fuvA 549 53.70 1vl2A 421 53.97 c.26.2.1,d.210.1.1 108708,108709 2dwcA 433 55.21 1obfO 335 57.87 c.2.1.3,d.81.1.1 86768,86769 1ez4A 318 58.32 c.2.1.5,d.162.1.1 64917,64918 1oatA 439 59.38 c.67.1.4 34461 2ag6A 314 59.81 2nqtA 352 59.90 3caiA 406 59.94 1dssG 333 60.00 c.2.1.3,d.81.1.1 30022,39937 1zud1 251 60.20 1z45A 699 60.79 b.30.5.4,c.2.1.2 124427,124428 1ynuA 473 61.02 c.67.1.4 123762 1aquA 297 61.29 c.37.1.5 31942 2e7jA 371 61.68 1r4wA 226 62.63 c.47.1.13 97050 2ejwA 332 62.76 1bg6 359 63.24 2b9wA 424 63.57 1o1yA 239 63.99 c.23.16.1 86554 2f7lA 455 64.01 1irxA 523 64.24 a.97.1.2,c.26.1.1 71378,71379 2e18A 257 64.65 2zg5A 397 64.89 2oatA 439 65.24 c.67.1.4 34452 1k92A 455 65.85 c.26.2.1,d.210.1.1 68325,68326 2gagA 965 66.14 1q9iA 571 67.74 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 2fyfA 398 68.12 2ordA 397 70.13 1eg5A 384 70.36 c.67.1.3 34429 1g3mA 294 71.61 c.37.1.5 83268 2vapA 364 72.06 1t2aA 375 73.32 c.2.1.2 99078 1o4sA 389 73.87 c.67.1.1 86620 1in4A 334 74.28 a.4.5.11,c.37.1.20 62597,62598 2pzmA 330 75.30 1ktbA 405 75.62 b.71.1.1,c.1.8.1 72960,72961 2qytA 317 75.80 2nvaA 372 78.12 1iowA 306 78.42 c.30.1.2,d.142.1.1 31713,41481 1ebfA 358 78.45 c.2.1.3,d.81.1.2 30033,39948 1w5dA 462 78.66 e.3.1.3 120642 1p5dX 463 79.41 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2hp1A 432 79.52 2rgyA 290 79.67 1cf2O 337 79.87 c.2.1.3,d.81.1.1 29994,39909 2o3jA 481 80.46 2dvzA 314 81.30 1ru8A 232 81.98 c.26.2.1 97849 1k2yX 463 82.08 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1iugA 352 83.55 c.67.1.3 90699 2o7cA 398 85.32 1f0kA 364 85.47 c.87.1.2 35465 2bcgG 453 86.45 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 1dfoA 417 87.05 c.67.1.4 34480 2q0zX 339 87.07 2ddmA 283 87.69 2ragA 417 88.34 1sznA 417 88.46 b.71.1.1,c.1.8.1 106162,106163 2ivfA 976 88.68 2i0kA 561 88.88 2aefA 234 89.42 1oc2A 348 89.78 c.2.1.2 92765 1e5eA 404 89.80 c.67.1.3 59265 1p3wA 404 89.84 c.67.1.3 87752