# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 6.35e-10 a.60.1.2 100280 2f3nA 76 1.46e-09 a.60.1.2 132885 1b4fA 82 5.17e-09 a.60.1.2 17934 1b0xA 94 8.28e-09 a.60.1.2 17933 1ow5A 85 2.67e-08 a.60.1.2 93630 2e8oA 103 4.49e-07 3bs5B 80 2.98e-05 1oxjA 173 0.003083 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.007336 a.60.1.2 73077 2d3dA 88 0.01637 3bs5A 106 0.04060 1cokA 68 0.05156 a.60.1.2 17945 3bs7A 78 0.05306 1dxsA 80 0.05545 a.60.1.2 17944 1pk1B 89 0.4869 a.60.1.2 118712 1t2dA 322 2.162 c.2.1.5,d.162.1.1 99084,99085 1aq6A 253 2.193 c.108.1.1 43331 2fjcA 156 3.039 a.25.1.1 133559 2fdrA 229 3.890 c.108.1.6 133319 2v7pA 310 4.315 1kmiZ 214 4.873 h.4.11.1 72752 2cprA 124 5.435 a.60.8.4 130705 1q06A 135 5.441 a.6.1.3 95493 3cs3A 277 5.838 1u6rA 380 5.931 a.83.1.1,d.128.1.2 119600,119601 1ji4A 144 5.974 a.25.1.1 77117 2d5kA 156 6.163 2ekgA 327 6.540 2dkyA 91 6.812 2zf5O 497 7.876 2z90A 161 8.307 1amoA 615 8.409 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2f48A 555 10.03 c.89.1.1 132915 2hd9A 145 10.13 1uxjA 309 10.97 c.2.1.5,d.162.1.1 108112,108113 1fnf 368 11.42 3mdeA 385 11.56 a.29.3.1,e.6.1.1 16594,42855 1u9lA 70 13.22 a.60.4.2 107751 1ou8A 111 13.26 b.136.1.1 93543 2qg3A 208 14.09 1ceqA 316 14.79 c.2.1.5,d.162.1.1 30163,42130 2c41A 158 15.12 1t4oA 117 16.61 d.50.1.1 106425 1zxxA 319 17.34 2vigA 391 17.36 1vrpA 381 17.68 a.83.1.1,d.128.1.2 120473,120474 1o6aA 96 18.00 b.139.1.1 92562 1ox8A 107 19.04 b.136.1.1 93671 2jgoA 31 19.15 1omp 370 19.34 1ldg 316 19.34 2jbrA 422 19.51 1ur5A 309 20.35 c.2.1.5,d.162.1.1 99807,99808 2yysA 286 20.62 2pw4A 188 21.28 2sli 679 21.51 2vofA 157 21.94 1azwA 313 23.84 c.69.1.7 34658 2ek5A 129 23.99 1y7tA 327 24.08 c.2.1.5,d.162.1.1 122718,122719 1jqiA 388 24.71 a.29.3.1,e.6.1.1 67087,67088 1y9bA 90 25.57 a.43.1.9 122777 2pytA 133 25.58 1knxA 312 25.66 c.98.2.1,c.91.1.2 77459,77460 1pzgA 331 25.97 c.2.1.5,d.162.1.1 95425,95426 1qtrA 317 26.13 c.69.1.7 34660 6ldhA 329 27.56 c.2.1.5,d.162.1.1 30161,42128 1iu8A 206 27.82 c.56.4.1 71436 1nqeA 594 28.19 f.4.3.3 86027 3cz6A 168 29.15 1crkA 380 29.15 a.83.1.1,d.128.1.2 18458,41193 2dvkA 188 29.16 1r7mA 235 31.16 d.95.2.1,d.95.2.1 111713,111714 1iirA 415 31.82 c.87.1.5 62453 1ez3A 127 31.82 a.47.2.1 17768 1mpxA 615 31.84 b.18.1.13,c.69.1.21 85041,85042 2phjA 251 32.22 2rflA 173 32.40 1ede 310 32.54 1b1cA 181 32.58 c.23.5.2 31212 1oxnA 140 34.64 g.52.1.1 93704 2d29A 387 34.71 a.29.3.1,e.6.1.1 131157,131158 1wm1A 317 34.73 c.69.1.7 109405 1broA 277 34.84 c.69.1.12 34700 1swvA 267 35.38 c.108.1.3 112134 1uqvA 85 35.41 a.60.1.2 99798 1htwA 158 35.69 c.37.1.18 71083 3d2lA 243 35.82 1cosA 31 36.92 k.4.1.1 46405 2pfkA 320 37.55 c.89.1.1 35577 2dxnA 274 38.19 1i12A 160 38.33 d.108.1.1 61515 1xdyA 298 38.89 d.176.1.1 115186 2h5gA 463 38.92 1f16A 192 38.93 f.1.4.1 43400 3b5nC 70 39.28 2i33A 258 40.33 1b9bA 255 41.69 c.1.1.1 28531 2gr8A 99 41.91 d.24.1.4 135522 1mtzA 293 42.18 c.69.1.7 79467 1o9rA 162 43.10 a.25.1.1 86706 1dwkA 156 43.11 a.35.1.4,d.72.1.1 17075,39606 1uouA 474 43.22 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1rovA 857 43.43 a.119.1.1,b.12.1.1 97674,97675 1vr3A 191 44.21 b.82.1.6 120431 1hyhA 309 44.37 c.2.1.5,d.162.1.1 30150,42117 1dgwA 178 44.40 b.82.1.2 28090 1ojqA 212 44.43 d.166.1.1 93146 2vm6A 150 44.89 2dgdA 223 46.36 1va4A 279 46.75 c.69.1.12 108458 1lvlA 458 48.64 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1gutA 68 49.49 b.40.6.1 65576 2rhwA 283 49.57 2hazA 105 50.23 b.1.2.1 136303 1uujA 88 52.37 a.221.1.1 108046 1vfgA 390 52.82 a.173.1.1,d.218.1.4 108570,108571 1vrbA 342 54.39 b.82.2.11 120450 3mddA 385 55.23 a.29.3.1,e.6.1.1 16592,42853 1brt 277 55.24 1fxoA 293 55.33 c.68.1.6 34524 2buwB 241 55.47 1jmsA 381 55.62 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2fug7 129 55.83 1ja1A 622 56.55 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1akoA 268 56.79 d.151.1.1 41779 2c2uA 207 56.99 2pg0A 385 57.52 2cklA 108 59.29 2f6uA 234 59.69 c.1.4.1 133061 1hkhA 279 61.49 c.69.1.12 90628 1a2zA 220 62.52 c.56.4.1 33794 2onuA 152 62.94 1ehyA 294 63.15 c.69.1.11 34693 1s3zA 165 63.49 d.108.1.1 105250 1bu5A 147 63.73 c.23.5.1 31155 2ijaA 295 63.96 2jh2A 148 64.48 1mc3A 296 64.86 c.68.1.6 78943 1neyA 247 65.46 c.1.1.1 80449 2hzbA 333 68.88 c.143.1.1 136911 2pujA 286 69.07 1sflA 238 69.31 c.1.10.1 112077 1zoiA 276 70.60 2csgA 424 70.80 b.82.2.12 130768 1csbB 205 71.21 2pibA 216 72.40 2vlbA 251 72.41 1wbeA 209 74.98 1exzA 141 75.11 a.26.1.2 16877 1e2tA 284 75.18 d.3.1.5 37121 1ez4A 318 76.06 c.2.1.5,d.162.1.1 64917,64918 2go7A 207 76.55 c.108.1.6 135434 1fl9A 161 76.63 c.37.1.18 70137 1iz7A 295 76.90 c.69.1.8 76982 1fntc 245 77.45 1lnsA 763 77.95 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1lvwA 295 78.63 c.68.1.6 84723 1z2mA 155 80.01 d.15.1.1,d.15.1.1 124387,124388 1q6uA 245 80.41 d.26.1.1 95998 2fepA 289 82.16 1pud 386 82.34 1yppA 286 82.62 b.40.5.1 25407 2vphA 100 82.66 2ocgA 254 82.75 2i6tA 303 82.95 2vbkA 514 82.97 2nn6E 305 83.41 1y8xA 160 85.07 d.20.1.1 122769 3b85A 208 85.13 1aw2A 256 85.63 c.1.1.1 28523 1b6gA 310 86.34 c.69.1.8 34661 2pq7A 220 86.52 1brtA 277 86.74 c.69.1.12 34699 1qh4A 380 86.84 a.83.1.1,d.128.1.2 18462,41197 8prkA 287 86.93 b.40.5.1 25395 2plnA 137 87.20 3bfvA 271 88.43 1fnlA 175 88.45 b.1.1.4,b.1.1.4 21783,21784 1gdeA 389 88.65 c.67.1.1 60456