# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.68e-08 a.60.1.2 100280 1b4fA 82 4.85e-07 a.60.1.2 17934 1b0xA 94 8.98e-07 a.60.1.2 17933 2f3nA 76 1.45e-06 a.60.1.2 132885 1ow5A 85 4.27e-06 a.60.1.2 93630 2e8oA 103 0.000144 3bs5B 80 0.000766 1oxjA 173 0.03645 a.60.1.2,a.118.1.13 87517,87518 2d3dA 88 0.1006 3bs5A 106 0.1043 1kw4A 89 0.1165 a.60.1.2 73077 1cokA 68 0.3861 a.60.1.2 17945 3bs7A 78 0.8323 1dxsA 80 0.9393 a.60.1.2 17944 1y7yA 74 2.078 a.35.1.3 122729 1pk1B 89 2.247 a.60.1.2 118712 2f48A 555 3.172 c.89.1.1 132915 1iu8A 206 3.371 c.56.4.1 71436 2b5aA 77 3.582 a.35.1.3 127882 1cviA 342 9.071 c.60.1.2 33989 1j7nA 776 12.29 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 3bl4A 124 12.54 1zxxA 319 12.91 1a2zA 220 14.61 c.56.4.1 33794 1e7wA 291 16.06 c.2.1.2 59373 1uouA 474 16.25 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2ekgA 327 17.91 1jipA 403 18.81 a.104.1.1 66748 2qg3A 208 19.45 1aq6A 253 20.23 c.108.1.1 43331 1b1cA 181 21.81 c.23.5.2 31212 1bg1A 722 21.91 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 2yxlA 450 22.51 1v2dA 381 22.58 c.67.1.1 108281 1wy1A 172 24.21 1bf5A 545 25.78 a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 3bqsA 93 27.63 2hpaA 342 28.36 c.60.1.2 33985 1un8A 552 28.88 c.119.1.2,a.208.1.1 103806,99661 2bh9A 489 29.63 1y7tA 327 31.44 c.2.1.5,d.162.1.1 122718,122719 1odfA 290 31.70 c.37.1.6 92782 1tiwA 602 31.74 a.176.1.1,c.1.23.2 112430,112431 1thtA 305 32.01 c.69.1.13 34711 1dgwA 178 32.23 b.82.1.2 28090 2z90A 161 34.03 2h5gA 463 36.70 1z8oA 404 36.75 a.104.1.1 124722 1h0hA 977 40.87 b.52.2.2,c.81.1.1 76435,76436 2dvkA 188 41.99 1dwkA 156 42.14 a.35.1.4,d.72.1.1 17075,39606 2phjA 251 43.60 1uurA 473 45.86 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 2fswA 107 48.92 a.4.5.69 134042 2oexA 351 49.16 1gajA 257 49.52 c.37.1.12 60416 3mdeA 385 50.28 a.29.3.1,e.6.1.1 16594,42855 1bo9A 73 50.93 a.65.1.1 18146 1zkdA 387 51.52 c.66.1.52 125184 1itwA 741 51.57 c.77.1.2 76793 1jqiA 388 51.71 a.29.3.1,e.6.1.1 67087,67088 1m3iA 471 51.97 f.9.1.1 91178 1h6hA 143 52.22 d.189.1.1 65681 2fug7 129 53.43 1kvnA 104 53.74 d.201.1.1 73066 1miwA 404 54.99 a.173.1.1,d.218.1.4 79162,79163 1j0fA 100 55.09 c.47.1.14 90739 2pfkA 320 55.25 c.89.1.1 35577 1ly1A 181 55.89 c.37.1.1 74334 1jpzA 473 56.19 a.104.1.1 67069 2ivfA 976 62.07 2cprA 124 62.72 a.60.8.4 130705 1u9lA 70 64.17 a.60.4.2 107751 1iirA 415 65.46 c.87.1.5 62453 2z2iA 191 65.53 2hztA 107 65.96 2rflA 173 66.31 1tig 94 68.66 1eupA 403 68.70 a.104.1.1 18967 2djkA 133 70.73 c.47.1.2 131548 1jeyA 609 71.34 b.131.1.1,c.62.1.3 90370,90371 3b46A 447 72.88 2fclA 169 72.99 d.218.1.11 133273 2ifeA 100 73.60 d.68.1.1 39567 1lliA 92 74.21 a.35.1.2 17025 1r69 69 74.65 104lA 166 74.91 d.2.1.3 36969 1stzA 338 74.95 a.4.5.51,d.110.2.3 106009,106010 1ck7A 631 75.92 b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 1gtmA 419 76.69 c.2.1.7,c.58.1.1 30223,33871 1vfgA 390 77.06 a.173.1.1,d.218.1.4 108570,108571 1vl2A 421 79.53 c.26.2.1,d.210.1.1 108708,108709 2icgA 160 79.88 2b0tA 738 81.33 1pfo 500 82.85 3bgeA 201 82.89 2a25A 193 83.62 1gutA 68 83.80 b.40.6.1 65576 1yarA 233 84.71 d.153.1.4 122837 2fjcA 156 85.52 a.25.1.1 133559 1y97A 238 86.71 c.55.3.5 122773 2de0X 526 87.43 1ou8A 111 87.45 b.136.1.1 93543 1xg7A 250 87.56 a.96.1.6 115281 1l0iA 78 87.91 a.28.1.1 77643 1ox8A 107 89.25 b.136.1.1 93671 2jbrA 422 89.53