# List of top-scoring protein chains for T0500.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z43A 324 0.6308 2e8nA 88 0.6712 1tjyA 316 0.7781 c.93.1.1 107062 2eaoA 99 1.298 3c5mA 396 1.444 1b0xA 94 2.063 a.60.1.2 17933 1ks8A 433 2.752 a.102.1.2 77519 2ixdA 242 3.680 1jgvH 218 5.037 b.1.1.1,b.1.1.2 66692,66693 1jguH 217 5.065 b.1.1.1,b.1.1.2 66688,66689 2etbA 256 5.280 2etcA 274 5.877 1sggA 75 6.685 a.60.1.2 17943 1ucvA 81 7.130 a.60.1.2 99191 1ccwA 137 7.567 c.23.6.1 31238 4thiA 362 8.999 c.94.1.1 35793 1vpdA 299 9.091 a.100.1.1,c.2.1.6 113951,113952 1yhdA 100 9.255 2thiA 379 9.639 c.94.1.1 35794 3thiA 371 11.39 c.94.1.1 35792 2vouA 397 11.62 2e1mA 376 11.81 1w97L 246 13.31 c.55.1.11,c.55.1.11 114406,114407 1yf5L 254 14.20 c.55.1.11,c.55.1.11 123049,123050 2bh1A 250 14.59 c.55.1.11,c.55.1.11 128506,128507 2pxxA 215 17.10 2ie7A 318 17.16 a.65.1.1 137293 1bcwA 319 17.24 a.65.1.1 18176 1n42A 319 17.52 a.65.1.1 79979 1bc0A 319 17.70 a.65.1.1 18174 2h0mA 318 17.85 1n44A 319 18.19 a.65.1.1 79980 3b6nA 187 18.22 2ranA 316 18.51 a.65.1.1 18170 1n41A 319 18.67 a.65.1.1 79978 2h0kA 318 18.85 2h0lA 318 19.13 1iqdA 211 19.39 b.1.1.1,b.1.1.2 62644,62645 2f37A 251 19.50 2rjpA 316 19.87 1bcyA 319 24.96 a.65.1.1 18172 1bczA 319 25.04 a.65.1.1 18177 1bc3A 319 25.17 a.65.1.1 18175 1u6aL 215 26.51 b.1.1.1,b.1.1.2 119566,119567 1n3lA 372 30.13 c.26.1.1 79966 1rhhA 215 31.11 b.1.1.1,b.1.1.2 97473,97474 1bc1A 319 32.66 a.65.1.1 18173 1hvdA 319 33.61 a.65.1.1 18154 1pciA 322 33.78 d.3.1.1 37022 2z0xA 158 34.20 1twfA 1733 34.42 e.29.1.2 112725 1anxA 319 35.29 a.65.1.1 18161 1avhA 320 35.90 a.65.1.1 18159 1xs8A 91 35.91 d.279.1.1 115920 1w0rA 442 36.50 2gv9A 1193 36.72 2ismA 352 37.16 3cymA 440 38.86 2j3sA 288 38.92 2z90A 161 41.32 1hvfA 319 41.83 a.65.1.1 18155 1hveA 319 43.25 a.65.1.1 18156 1t2qL 217 43.30 2j9oA 298 44.77 1w8xP 117 45.13 i.6.1.1 114392 1cvsC 225 46.37 b.1.1.4,b.1.1.4 21726,21727 2bvaA 292 46.58 1jmyA 522 46.84 c.69.1.1 63182 1koaA 491 47.83 b.1.1.4,d.144.1.7 21712,41642 2j7vA 298 48.19 2q0nA 301 48.25 1b1aA 137 49.86 c.23.6.1 31242 1dn0A 215 51.38 b.1.1.1,b.1.1.2 19830,20934 2pfyA 301 51.95 2d03L 217 52.07 2j0iA 303 53.10 1zlgA 680 54.80 1y8qA 346 56.45 1zbhA 299 57.63 2fx7L 214 59.17 b.1.1.1,b.1.1.2 134278,134279 1ewrA 649 60.26 a.113.1.1,c.37.1.12,c.55.6.1 19073,32387,33744 1b25A 619 61.85 a.110.1.1,d.152.1.1 19044,41796 2dpoA 319 64.37 1c8m2 252 65.20 1d3e2 252 65.73 1igfL 219 65.83 b.1.1.1,b.1.1.2 19812,20922 1aym2 261 65.97 2v7yA 509 66.55 1pbyA 489 67.72 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1t3eA 421 69.27 b.85.6.1,b.103.1.1,c.57.1.2 106348,106349,106350 2noiA 325 69.78 2nofA 325 70.27 a.96.1.3,d.129.1.2 138407,138408 2imqX 282 72.29 2noeA 325 73.77 a.96.1.3,d.129.1.2 138405,138406 1aylA 541 74.49 c.91.1.1,c.109.1.1 64718,64719 2p1rA 299 75.41 2qqyA 149 75.47 2zb6A 481 75.78 2i5wA 315 76.16 a.96.1.3,d.129.1.2 137069,137070 2py7X 540 76.24 2olrA 540 76.33 c.91.1.1,c.109.1.1 139140,139141 1n3aA 317 79.39 a.96.1.3,d.129.1.2 85291,85292 1n3cA 317 79.66 a.96.1.3,d.129.1.2 85293,85294 2ffhA 425 80.28 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1plgL 215 80.55 b.1.1.1,b.1.1.2 20080,21112 1tuoA 464 80.88 1yqrA 319 80.92 a.96.1.3,d.129.1.2 123897,123898 2v17L 214 82.34 1yqkA 319 82.44 a.96.1.3,d.129.1.2 123889,123890 1uemA 117 82.63 b.1.2.1 99267 2furA 209 82.67 b.45.1.1 134185 1xxmC 165 82.77 1ebmA 317 83.23 a.96.1.3,d.129.1.2 18751,41300 2b9lA 394 83.46 2nohA 325 84.23 a.96.1.3,d.129.1.2 138409,138410 1fn7A 317 84.42 a.96.1.3,d.129.1.2 59892,59893 1lqbC 162 85.42 b.3.3.1 74186 1lm8V 160 86.13 b.3.3.1 74035 2iy3A 432 87.08 a.24.13.1,c.37.1.10 137790,137791 2fji1 399 87.13 2iy5B 785 87.22 a.6.1.1,a.6.1.1,b.40.4.4,b.153.1.1,d.58.13.1,d.104.1.1 137794,137795,137796,137797,137798,137799 1m3qA 317 87.39 a.96.1.3,d.129.1.2 91184,91185 1ji4A 144 87.77 a.25.1.1 77117 1lwyA 324 87.86 a.96.1.3,d.129.1.2 78285,78286 2rirA 300 88.41 1evtC 225 88.50 b.1.1.4,b.1.1.4 21730,21731