# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozgA 396 0.4637 2a4nA 182 0.4961 d.108.1.1 126159 2i00A 406 0.7012 2ae6A 166 0.7332 d.108.1.1 126600 2hv2A 400 0.7927 2pc1A 201 0.8719 1ks9A 291 0.8956 a.100.1.7,c.2.1.6 68857,68858 2dxqA 150 0.9403 3c26A 266 1.013 2reeA 224 1.065 1i1dA 161 1.070 d.108.1.1 61526 2qecA 204 1.139 1s3zA 165 1.207 d.108.1.1 105250 1u6mA 199 1.260 d.108.1.1 113069 2q4vA 170 1.330 d.108.1.1 139878 2o28A 184 1.452 1mk4A 157 1.504 d.108.1.1 84979 1yvoA 172 1.519 d.108.1.1 124106 1yghA 164 1.551 d.108.1.1 40802 2q0yA 153 1.572 2fe7A 166 1.700 d.108.1.1 133325 2cntA 160 1.769 2oh1A 179 1.784 2fiaA 162 1.810 d.108.1.1 133514 1l0cA 207 1.813 d.108.1.1 73393 1b4fA 82 1.967 a.60.1.2 17934 2b5gA 171 2.007 d.108.1.1 127892 2j8mA 172 2.085 1yr0A 175 2.259 d.108.1.1 123905 1qstA 160 2.323 d.108.1.1 40804 1bg6 359 2.364 1gheA 177 2.584 d.108.1.1 76222 1i12A 160 2.613 d.108.1.1 61515 1qsmA 152 2.614 d.108.1.1 40808 2cy2A 174 2.903 d.108.1.1 131016 2pdoA 144 3.122 1cjwA 166 3.172 d.108.1.1 40818 1tiqA 180 3.211 d.108.1.1 107010 2fl4A 149 3.382 d.108.1.1 133706 2i6cA 160 3.512 d.108.1.1 137095 1vhsA 175 3.579 d.108.1.1 100698 1kuxA 207 3.592 d.108.1.1 73021 1b0xA 94 3.862 a.60.1.2 17933 1wwzA 159 3.909 d.108.1.1 121380 1z82A 335 4.034 1b87A 181 4.202 d.108.1.1 40797 1evyA 366 4.202 a.100.1.6,c.2.1.6 18811,30215 1z4rA 168 4.535 d.108.1.1 124444 1q2yA 140 4.746 d.108.1.1 95655 2fiwA 172 4.902 d.108.1.1 133539 1yk3A 210 4.921 d.108.1.1 123493 3blnA 143 5.124 1qsoA 149 5.547 d.108.1.1 40812 1txgA 335 6.394 a.100.1.6,c.2.1.6 112775,112776 1v38A 78 7.070 a.60.1.2 100280 3cumA 302 7.475 4crxA 322 7.704 a.60.9.1,d.163.1.1 18095,42155 1zx4A 192 8.249 1oacA 727 8.783 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1z4eA 153 9.684 d.108.1.1 124431 1nslA 184 9.757 d.108.1.1 86137 2ganA 190 9.878 d.108.1.1 134889 2atrA 138 9.890 d.108.1.1 127305 1xebA 150 10.95 d.108.1.1 115219 1f44A 324 11.00 a.60.9.1,d.163.1.1 64982,64983 2pv7A 298 11.17 2ob0A 170 11.38 1jayA 212 11.55 c.2.1.6 66478 2euiA 153 12.14 d.108.1.1 132387 1cfb 205 12.25 1on0A 158 14.05 d.108.1.1 87095 1xo0A 324 14.20 a.60.9.1,d.163.1.1 115674,115675 2f1kA 279 15.14 a.100.1.12,c.2.1.6 132772,132773 1dkzA 219 15.50 a.8.4.1,b.130.1.1 90345,90346 2culA 232 15.75 c.3.1.7 130813 2zbwA 335 15.92 1y71A 130 16.61 b.34.16.1 122677 2ahrA 259 16.90 a.100.1.10,c.2.1.6 126775,126776 1a0p 290 17.28 1a3qA 285 17.28 b.1.18.1,b.2.5.3 21932,22447 2bswA 146 19.31 d.108.1.1 129127 2v82A 212 19.56 1ne2A 200 20.62 c.66.1.32 85586 2prbA 196 20.67 2ew2A 316 22.00 1d4aA 273 22.84 c.23.5.3 31219 2zdiC 151 23.69 2opwA 291 24.78 1y9kA 157 25.85 d.108.1.1 122779 2q0lA 311 28.40 2p4qA 497 28.82 1xgyL 216 29.44 2gysA 419 29.93 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2rdqA 288 30.38 1zanL 214 30.41 1pbe 394 30.78 1wg8A 285 32.43 a.60.13.1,c.66.1.23 114605,114606 2jgoA 31 33.80 1s7kA 182 34.00 d.108.1.1 118878 1u00A 227 34.00 a.8.4.1,b.130.1.1 112900,112901 1lvfA 110 34.84 a.47.2.1 74280 3b2nA 133 35.11 1yreA 197 35.41 d.108.1.1 123919 2jdcA 146 35.45 2iepA 192 35.69 1mjuL 219 36.66 b.1.1.1,b.1.1.2 91304,91305 1q9rA 219 38.52 b.1.1.1,b.1.1.2 96305,96306 1vcbC 160 41.05 b.3.3.1 22535 1np3A 338 45.24 a.100.1.2,c.2.1.6 85946,85947 1fl2A 310 47.35 c.3.1.5,c.3.1.5 59869,59870 1cs6A 382 49.68 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1n0xL 215 51.32 b.1.1.1,b.1.1.2 91532,91533 1rurL 217 51.51 b.1.1.1,b.1.1.2 97881,97882 2ajuL 216 51.61 2r7hA 177 52.73 2pgdA 482 52.90 a.100.1.1,c.2.1.6 18778,30190 1ledA 243 54.26 b.29.1.1 24039 1okgA 373 55.23 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2a4dA 160 56.96 d.20.1.1 126152 1cosA 31 57.11 k.4.1.1 46405 1y9bA 90 57.79 a.43.1.9 122777 2pgd 482 59.01 1vpdA 299 60.03 a.100.1.1,c.2.1.6 113951,113952 1sglA 209 60.60 d.124.1.1 105536 1c5cL 214 61.71 b.1.1.1,b.1.1.2 20474,21438 2aabL 218 62.25 1ks8A 433 63.02 a.102.1.2 77519 1tetL 216 63.93 b.1.1.1,b.1.1.2 19902,20996 1h7cA 108 65.69 a.7.5.1 70914 2fctA 313 66.08 b.82.2.9 133282 2nt2A 145 67.34 1r5yA 386 68.83 c.1.20.1 97134 2nn6E 305 69.54 1k0iA 394 69.95 c.3.1.2,d.16.1.2 67942,67943 1ztxL 212 70.15 1forL 210 70.20 b.1.1.1,b.1.1.2 19988,21044 2pajA 492 70.45 1ae9A 179 70.92 d.163.1.1 42153 1mp8A 281 71.08 d.144.1.7 91384 2df8A 325 72.24 1pud 386 73.10 2bi7A 384 73.97 1yqgA 263 74.66 2oszA 93 75.99 2ewcA 126 77.63 d.79.1.1 132454 2bkdN 134 78.12 1zoyA 622 78.17 2r1iA 172 81.10 1oe4A 247 85.51 c.18.1.3 86895 1lbuA 213 85.67 a.20.1.1,d.65.1.1 16416,39549 2fjbA 643 86.11 1lm8V 160 86.40 b.3.3.1 74035 1mexL 213 87.04 b.1.1.1,b.1.1.2 91259,91260 1w4xA 542 87.22 c.3.1.5,c.3.1.5 109171,109172 1e6oL 212 87.97 b.1.1.1,b.1.1.2 20494,21452 1ogqA 313 88.95 c.10.2.8 86996