# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhxA	65	9.12e-11	d.15.7.1	79134
2on8A	56	9.29e-11		
2qmtA	56	1.02e-10		
2igd	61	1.03e-10		
2gi9A	56	1.03e-10		
1pgx	83	1.08e-10		
1mi0A	65	1.11e-10	d.15.7.1	79135
2igdA	61	1.13e-10	d.15.7.1	37821
2b7eA	59	3.375		
2qsbA	89	14.21		
2qzgA	94	15.13		
1uzcA	71	26.11	a.159.2.1	100222
1b2iA	83	31.08	g.14.1.1	44640
1ql3A	99	37.44	a.3.1.1	15822
1h8gA	95	39.27	b.109.1.1	65735
1i71A	83	42.42	g.14.1.1	61864
1bwwA	109	46.02	b.1.1.1	20518
1qfwM	108	47.26	b.1.1.1	20436
1cd8	114	49.51		
3cjsA	60	49.75		
1krnA	88	50.90	g.14.1.1	44629
1eeuA	114	50.95	b.1.1.1	20546
2jh1A	246	53.92		
1co6A	107	54.32	a.3.1.1	15894
2f6eA	127	56.35		
1xg0A	76	58.21	d.184.1.1	115273
1i8kA	107	59.68	b.1.1.1	71130
1eeqA	114	60.29	b.1.1.1	20544
2qklA	127	60.99		
1a7nL	107	64.36	b.1.1.1	19940
1wz4A	23	68.50		
1pmlA	86	69.41	g.14.1.1	44632
1iznB	277	73.29	e.43.1.2	83848
2f15A	96	74.45		
1j1xL	107	76.10	b.1.1.1	77064
1ki0A	253	76.79	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
1gvmA	136	78.51	b.109.1.1	70612
2hu9A	130	80.10		
2v05A	311	82.40		
1axhA	37	84.15	g.3.6.2	44109
1xviA	275	84.75	c.108.1.10	116088
2cruA	118	86.89	a.5.6.1	130742