# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	6.30e-13		
2qmtA	56	6.42e-13		
1pgx	83	6.61e-13		
2on8A	56	6.72e-13		
1mhxA	65	6.89e-13	d.15.7.1	79134
2igdA	61	7.19e-13	d.15.7.1	37821
2gi9A	56	7.46e-13		
1mi0A	65	7.72e-13	d.15.7.1	79135
2b7eA	59	0.8255		
1ql3A	99	5.274	a.3.1.1	15822
1uzcA	71	7.431	a.159.2.1	100222
3cjsA	60	10.62		
1b2iA	83	13.33	g.14.1.1	44640
2f15A	96	14.10		
1h8gA	95	14.57	b.109.1.1	65735
2i7hA	189	19.14		
1krnA	88	20.30	g.14.1.1	44629
2qsbA	89	22.61		
1i71A	83	24.46	g.14.1.1	61864
1pmlA	86	25.57	g.14.1.1	44632
2qzgA	94	25.66		
2f6eA	127	27.88		
1gvmA	136	28.70	b.109.1.1	70612
3bm1A	183	33.71		
1f5vA	240	33.88	d.90.1.1	40255
1xg0A	76	34.04	d.184.1.1	115273
1z0nA	96	34.23		
1co6A	107	34.37	a.3.1.1	15894
2jh1A	246	38.83		
1bkjA	240	39.81	d.90.1.1	40243
2v05A	311	40.03		
1lrzA	426	48.70	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1ay0A	680	49.05	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
1ki0A	253	49.55	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
1zgkA	308	49.64		
1a0hA	159	52.34	b.47.1.2,g.14.1.1	26229,44655
1nijA	318	53.41	c.37.1.10,d.237.1.1	85741,85742
2cruA	118	54.12	a.5.6.1	130742
2pbqA	178	56.92		
1bwwA	109	58.42	b.1.1.1	20518
1wzcA	249	60.22	c.108.1.10	121491
2hppP	79	64.77	g.14.1.1	44654
1z0mA	96	65.08		
1hcxA	127	66.67	b.109.1.1	65800
1y6iA	233	67.08	a.118.1.22,a.261.1.1	122660,122661
1qn2A	100	68.49	a.3.1.1	15882
5hpgA	84	69.83	g.14.1.1	44642
2hy5B	136	73.12	c.114.1.1	136866
1eeuA	114	73.43	b.1.1.1	20546
2pwwA	127	77.80		
2nx9A	464	79.46		
2jt1A	77	82.27		
1c2rA	116	84.07	a.3.1.1	15887
1iznB	277	85.22	e.43.1.2	83848
1cqmA	101	85.40	d.58.14.1	39321
2dskA	311	85.97		
1ghhA	81	86.09	d.57.1.1	38940
2if6A	186	86.61