# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	4.89e-11	d.15.7.1	37821
2igd	61	5.21e-11		
2on8A	56	5.46e-11		
2gi9A	56	7.25e-11		
2qmtA	56	8.12e-11		
2b7eA	59	0.9447		
2q00A	129	12.26		
1vf8A	377	14.87	c.1.8.5,d.26.3.1	120029,120030
1krnA	88	16.99	g.14.1.1	44629
1ql3A	99	17.07	a.3.1.1	15822
5hpgA	84	25.87	g.14.1.1	44642
2v05A	311	27.49		
1uwcA	261	27.69	c.69.1.17	100101
2f6eA	127	32.13		
3cjsA	60	32.63		
1cxcA	124	37.35	a.3.1.1	15890
3b4sA	94	39.09		
1ic6A	279	39.30	c.41.1.1	62257
1fioA	196	40.38	a.47.2.1	17773
1iktA	120	40.98	d.106.1.1	66188
3cz6A	168	42.10		
1nl1A	147	46.08	g.14.1.1,g.32.1.1	91949,91950
1i71A	83	50.37	g.14.1.1	61864
2qzgA	94	63.56		
1z3xA	238	64.80	a.118.1.22,a.261.1.1	124416,124417
2qsbA	89	69.17		
1ptf	88	70.42		
1dw0A	112	74.20	a.3.1.1	15911
1ptfA	88	74.79	d.94.1.1	40549
3c2cA	112	75.87	a.3.1.1	15885
1eeuA	114	76.28	b.1.1.1	20546
2bh4X	134	76.29		
2qklA	127	76.52		
1x2gA	337	79.34		
2i9aA	145	79.53	g.3.11.1,g.14.1.1	137110,137111
2ffgA	87	83.49	d.317.1.1	133383
2ux9A	69	86.85		
2pwwA	127	87.41		
1xviA	275	89.50	c.108.1.10	116088