# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gi9A 56 4.68e-16 2igd 61 5.32e-16 2igd 2igdA 61 5.32e-16 d.15.7.1 37821 2qmtA 56 6.67e-16 1pgx 83 7.15e-16 2igd 1mi0A 65 1.36e-14 d.15.7.1 79135 2on8A 56 4.20e-14 1mhxA 65 2.38e-13 d.15.7.1 79134 2b7eA 59 1.04e+00 2vm6A 150 5.38e+00 2dk5A 91 5.55e+00 1f16A 192 5.65e+00 1f16A f.1.4.1 43400 1tit 98 6.39e+00 1tit 1uilA 113 7.22e+00 d.50.1.1 113255 1waaA 93 7.40e+00 2ejqA 130 7.89e+00 1ysjA 404 8.59e+00 c.56.5.4,d.58.19.1 123975,123976 1dpuA 99 1.30e+01 1dpuA a.4.5.16 16150 2iz3A 97 1.41e+01 2h7zA 75 1.58e+01 g.7.1.1 136231 3cpxA 321 1.59e+01 1wpgA 994 1.60e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 2qsbA 89 1.65e+01 2qz7A 194 1.73e+01 1uxtA 501 1.75e+01 c.82.1.1 108125 1kz1A 159 1.85e+01 c.16.1.1 73318 1z1dA 103 1.94e+01 a.4.5.16 124351 2rg4A 216 1.96e+01 1k3tA 359 2.02e+01 c.2.1.3,d.81.1.1 72022,72023 3cpnA 330 2.02e+01 1umdA 367 2.05e+01 c.36.1.11 99599 1fseA 74 2.09e+01 1fseA a.4.6.2 60000 2vofA 157 2.10e+01 2jt1A 77 2.14e+01 2dqsA 995 2.17e+01 2hyiD 77 2.24e+01 1orc 71 2.29e+01 1orc 1orcA 71 2.29e+01 a.35.1.2 17054 2rgqA 144 2.37e+01 1qvtA 194 2.38e+01 a.4.1.9,a.121.1.1 104602,104603 2doaA 104 2.40e+01 1jyhA 157 2.45e+01 d.60.1.3 71956 1jt6A 188 2.45e+01 a.4.1.9,a.121.1.1 67247,67248 2p12A 176 2.53e+01 2h7zB 77 2.63e+01 g.7.1.1 136232 2oktA 342 2.72e+01 1ufmA 84 2.86e+01 a.4.5.47 107816 3cjsA 60 2.86e+01 1aocA 175 2.86e+01 1aocA g.17.1.5 44817 2bs2B 241 2.89e+01 a.1.2.1,d.15.4.2 129033,129034 1ae9A 179 2.89e+01 1ae9A d.163.1.1 42153 1deeG 54 2.92e+01 1fc2C a.8.1.1 16343 1hz6A 72 3.14e+01 2ptl d.15.7.1 61429 1uzcA 71 3.14e+01 a.159.2.1 100222 3fruA 269 3.15e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1s99A 200 3.24e+01 d.58.48.2 112046 1vs3A 249 3.28e+01 2g7rA 117 3.34e+01 1t6aA 126 3.65e+01 d.129.8.1 106555 1t6gC 184 3.66e+01 b.29.1.11 106569 3c8wA 255 3.71e+01 2uykA 129 3.74e+01 1wpbA 172 3.95e+01 a.233.1.1 114783 2cmxA 118 4.21e+01 2vqcA 118 4.21e+01 2vg0A 227 4.26e+01 2gr8A 99 4.32e+01 d.24.1.4 135522 1d2rB 326 4.34e+01 1d2rB c.26.1.1 31573 1e0fI 57 4.39e+01 1e0fI g.3.15.2 44377 1s7hA 200 4.40e+01 d.58.48.2 105349 2bpdA 142 4.47e+01 1s9uA 207 4.48e+01 a.184.1.1 105390 1mr1C 99 4.61e+01 d.217.1.2 79420 3c8lA 122 4.84e+01 2j0sT 150 5.03e+01 1gypA 358 5.03e+01 1dssG c.2.1.3,d.81.1.1 30004,39919 2irfG 113 5.06e+01 2irfG a.4.5.23 16185 2olpA 152 5.08e+01 1zboA 210 5.10e+01 b.122.1.10 124859 2bphA 140 5.19e+01 1osyA 115 5.22e+01 b.1.21.1 93502 2okgA 255 5.26e+01 1dj8A 89 5.39e+01 1bg8A a.57.1.1 17919 1b9lA 120 5.48e+01 1b9lA d.96.1.3 40665 1uaqA 158 5.64e+01 c.97.1.2 88386 1ggwA 140 5.85e+01 1ggwA a.39.1.5 60490 1h4gA 207 5.91e+01 b.29.1.11 70863 1uwdA 103 5.93e+01 d.52.8.2 113447 2jn6A 97 5.97e+01 3bb9A 148 6.05e+01 2qv8A 159 6.07e+01 1d2rA 326 6.15e+01 1d2rB c.26.1.1 31572 5hpgA 84 6.49e+01 5hpgA g.14.1.1 44642 3bf7A 255 6.54e+01 2hoqA 241 6.60e+01 2fomB 185 6.64e+01 b.47.1.3 133884 1who 96 6.71e+01 1who 1whoA 96 6.71e+01 b.7.3.1 23215 1p6oA 161 6.72e+01 c.97.1.2 94185 1tukA 67 6.77e+01 a.52.1.1 119342 1xo3A 101 6.96e+01 d.15.3.3 115678 1dekA 241 6.96e+01 1dekA c.37.1.1 31842 2pliA 91 6.98e+01 1c3hA 137 7.16e+01 b.22.1.1 90405 2oz4A 265 7.35e+01 1s4nA 348 7.45e+01 c.68.1.16 98501 2ct0A 74 7.48e+01 2qklA 127 7.52e+01 2d42A 249 7.57e+01 3bcwA 123 7.58e+01 2ffwA 78 7.61e+01 1ydlA 79 7.65e+01 d.295.1.1 123001 1oaa 259 7.68e+01 1oaa 1oaaA 259 7.68e+01 c.2.1.2 29829 1brsD 89 7.72e+01 1ay7B c.9.1.1 30825 2ctdA 96 7.77e+01 g.37.1.1,g.37.1.1 130792,130793 1yljA 263 7.89e+01 1rp0A 284 7.91e+01 c.3.1.6 118782