# List of top-scoring protein chains for T0498.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2igdA 61 6.89e-14 d.15.7.1 37821 2ighA 61 6.89e-14 d.15.7.1 37832 1p7eA 56 7.58e-14 d.15.7.1 94221 1pgxA 83 7.84e-14 d.15.7.1 37823 1pgbA 56 8.99e-14 d.15.7.1 37824 2nmqA 55 9.21e-14 d.15.7.1 138377 1fccC 56 9.58e-14 2igd d.15.7.1 37829 2iggA 64 9.74e-14 d.15.7.1 37831 2qmtA 56 9.86e-14 1uwxA 63 9.95e-14 d.15.7.1 119765 1qkzA 64 9.99e-14 2igd d.15.7.1 37826 1ibxB 145 1.25e-13 1c9fA d.15.2.1 62232 2rmmA 56 1.34e-13 1pn5A 159 1.45e-13 a.77.1.5 94948 2i38A 150 1.58e-13 2i2yA 150 1.60e-13 2j52A 56 1.69e-13 1fd6A 57 2.26e-13 d.15.7.1 59769 2plpA 54 2.41e-13 d.15.7.1 139740 1em7A 56 4.08e-13 d.15.7.1 70131 2cwbA 108 4.09e-13 1q10A 56 9.19e-13 d.15.7.1 95526 1fclA 56 9.40e-13 d.15.7.1 59768 2onqA 56 2.03e-12 1gb4A 57 2.12e-12 d.15.7.1 37833 1mvkA 56 2.26e-12 d.15.7.1 79501 2on8A 56 2.99e-12 1zxhA 56 3.51e-12 1mi0A 65 5.49e-11 d.15.7.1 79135 1mhxA 65 1.13e-10 d.15.7.1 79134 1le3A 16 4.61e-02 k.29.1.1 73861 1zxgA 59 1.23e+00 2gh9A 386 2.11e+00 2b7eA 59 2.14e+00 1olpA 370 3.09e+00 a.124.1.1,b.12.1.3 93320,93321 2fs1A 56 3.78e+00 1qydA 313 3.94e+00 c.2.1.2 96583 1uc6A 109 4.27e+00 b.1.2.1 107766 3bfxA 296 6.02e+00 2dk5A 91 7.84e+00 2yu3A 95 7.91e+00 2rgqA 144 9.48e+00 1c0eA 157 9.97e+00 1dg9A c.44.1.1 32638 2bs3B 239 1.01e+01 a.1.2.1,d.15.4.2 129045,129046 2bs2B 241 1.02e+01 a.1.2.1,d.15.4.2 129033,129034 1ci0A 228 1.03e+01 1ci0A b.45.1.1 25750 1xzzA 246 1.27e+01 2p4uA 168 1.34e+01 1titA 98 1.67e+01 b.1.1.4 21716 2ejqA 130 1.82e+01 1eu3A 210 1.93e+01 1an8 b.40.2.2,d.15.6.1 25206,37795 3cz6A 168 1.98e+01 2pn5A 1325 2.04e+01 1vefA 395 2.25e+01 c.67.1.4 120018 1sy9B 26 2.46e+01 1waaF 93 2.65e+01 1waaA 93 2.65e+01 3bcwA 123 2.66e+01 1x13A 401 2.67e+01 1waaE 93 2.79e+01 1xctL 80 2.84e+01 1vjvA 415 2.85e+01 d.3.1.9 108632 1dg9A 157 3.21e+01 1dg9A c.44.1.1 32637 2qz2A 184 3.22e+01 1t6gC 184 3.51e+01 b.29.1.11 106569 1ae9A 179 3.52e+01 1ae9A d.163.1.1 42153 1ukrA 184 3.65e+01 1axkA b.29.1.11 24336 1k51A 72 3.70e+01 d.15.7.1 68147 1pnuM 111 3.70e+01 i.1.1.1 88210 1nwyM 113 3.74e+01 i.1.1.2 86357 2zjrL 114 3.76e+01 1hz6A 72 3.76e+01 2ptl d.15.7.1 61429 1ro5A 201 3.82e+01 d.108.1.3 105023 1lqvC 33 3.82e+01 g.32.1.1 74208 2ebsA 789 3.86e+01 1k53A 72 3.88e+01 d.15.7.1 68150 1k6xA 352 3.95e+01 c.2.1.2 68238 1sqjA 789 3.98e+01 b.69.13.1,b.69.13.1 105918,105919 1ne2A 200 4.07e+01 c.66.1.32 85586 2dibA 128 4.11e+01 b.1.18.10 131527 1nzyA 269 4.16e+01 1nzyA c.14.1.3 30903 1jxzA 269 4.19e+01 c.14.1.3 67435 1nzyB 269 4.23e+01 1nzyA c.14.1.3 30904 1cttA 294 4.31e+01 c.97.1.1,c.97.1.1 36022,36023 1xgkA 352 4.46e+01 c.2.1.2 115286 1mhhE 63 4.46e+01 d.15.7.1 79127 2r6oA 294 4.64e+01 1k3tA 359 4.72e+01 c.2.1.3,d.81.1.1 72022,72023 1hzdA 272 4.73e+01 c.14.1.3 65969 1ohoA 131 4.74e+01 d.17.4.3 118701 3bm1A 183 4.81e+01 3bm2A 185 4.85e+01 3cjsA 59 4.88e+01 2gt4A 160 5.11e+01 2pzvA 131 5.26e+01 1ryaA 160 5.27e+01 d.113.1.5 105122 2i8tA 167 5.32e+01 1uxtA 501 5.43e+01 c.82.1.1 108125 2gasA 307 5.45e+01 1uxvA 501 5.45e+01 c.82.1.1 108127 1ky8A 501 5.49e+01 c.82.1.1 77628 1cqsA 131 5.49e+01 d.17.4.3 83165 2qdeA 397 5.57e+01 5pntA 157 5.57e+01 c.44.1.1 32641 2z1cA 75 5.62e+01 2j44A 217 5.71e+01 1cmxA 236 5.80e+01 1uch d.3.1.6 37130 2o04A 399 5.82e+01 2v2kA 105 5.89e+01 1dekA 241 5.90e+01 1dekA c.37.1.1 31842 2cl8A 139 5.94e+01 2bpdA 142 5.94e+01 2bphA 140 5.96e+01 2hgaA 125 6.08e+01 1w4sA 174 6.12e+01 2p1kA 89 6.15e+01 2jt1A 77 6.17e+01 1x6hA 86 6.21e+01 g.37.1.1,g.37.1.1 121743,121744 3bf7A 255 6.22e+01 2pg1A 91 6.23e+01 d.39.1.1 139684 1xwwA 157 6.31e+01 2qklA 127 6.32e+01 2bspA 420 6.41e+01 1pcl b.80.1.1 28023 1bn8A 420 6.47e+01 1pcl b.80.1.1 28022 1ecfA 504 6.49e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 3bf8A 255 6.52e+01 1jmlA 72 6.52e+01 d.15.7.1 66887 2r3aA 300 6.55e+01 3cpnA 330 6.65e+01 1whoA 96 6.68e+01 b.7.3.1 23215 1w6yA 131 7.08e+01 d.17.4.3 120678 1mp4A 292 7.16e+01 c.68.1.6 79376 2go8A 122 7.18e+01 1ea2A 131 7.29e+01 d.17.4.3 64860 1jt6A 188 7.47e+01 a.4.1.9,a.121.1.1 67247,67248 1w02A 131 7.48e+01 d.17.4.3 108981 1k41A 131 7.51e+01 d.17.4.3 77252 2cwdA 161 7.53e+01 1rkwA 194 7.53e+01 a.4.1.9,a.121.1.1 104967,104968 1qvtA 194 7.54e+01 a.4.1.9,a.121.1.1 104602,104603 1z0nA 96 7.81e+01 1z0mA 96 7.84e+01 1p7dA 283 7.94e+01 d.163.1.1 94219 1z19A 283 7.95e+01